AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039668.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039668.01.T01 MTR_7g076940 100.000 259 0 0 1 259 1 259 0.0 528
MsG0780039668.01.T01 MTR_5g021800 95.736 258 11 0 1 258 1 258 0.0 508
MsG0780039668.01.T01 MTR_2g015360 41.026 117 63 3 98 214 51 161 7.81e-19 82.0
MsG0780039668.01.T01 MTR_3g035710 40.741 108 57 3 107 214 1 101 3.24e-16 73.9
MsG0780039668.01.T01 MTR_0002s0800 39.048 105 49 3 115 215 3 96 7.50e-14 68.9
MsG0780039668.01.T01 MTR_0002s0360 39.048 105 49 3 115 215 3 96 7.50e-14 68.9
MsG0780039668.01.T01 MTR_3g037420 38.144 97 53 3 119 215 8 97 2.23e-11 60.5
MsG0780039668.01.T01 MTR_4g051430 25.592 211 100 5 29 214 163 341 7.29e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039668.01.T01 AT4G36130 93.023 258 18 0 1 258 1 258 0.0 498
MsG0780039668.01.T01 AT2G18020 92.636 258 19 0 1 258 1 258 4.16e-175 483
MsG0780039668.01.T01 AT3G51190 84.519 239 36 1 1 238 1 239 3.59e-153 427
MsG0780039668.01.T01 ATCG00830 32.632 190 108 4 29 214 60 233 1.49e-25 102
MsG0780039668.01.T01 ATCG01310 32.632 190 108 4 29 214 60 233 1.49e-25 102
MsG0780039668.01.T01 AT2G44065 36.691 139 80 3 97 234 58 189 9.44e-17 77.0
MsG0780039668.01.T01 AT2G44065 36.691 139 80 3 97 234 58 189 9.44e-17 77.0
MsG0780039668.01.T01 AT2G44065 36.691 139 80 3 97 234 58 189 9.44e-17 77.0

Find 97 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGAGGACTGGTCGTCTT+AGG 0.241658 7:+67397675 MsG0780039668.01.T01:CDS
AATCTAAACTGCTTATTTAT+CGG 0.245431 7:-67397726 None:intergenic
GTCACTTGGCACAATCTTCT+TGG 0.305373 7:-67397417 None:intergenic
GAACTTGTGGTAAGCATTAC+CGG 0.310318 7:-67397501 None:intergenic
GTTTATTTACTGCGGTAAAA+AGG 0.324875 7:+67396487 MsG0780039668.01.T01:CDS
CCTCCGTGGGGATGCTCAAC+AGG 0.334759 7:-67397572 None:intergenic
GCCATGATTGGGCAAGTTGC+TGG 0.355007 7:+67397446 MsG0780039668.01.T01:CDS
GAAGTCGAGGGAACGGAAAC+GGG 0.358567 7:-67396309 None:intergenic
CAAGAGGACTGGTCGTCTTA+GGG 0.368154 7:+67397676 MsG0780039668.01.T01:CDS
AGTGACTGCAGGGCCATGAT+TGG 0.371357 7:+67397434 MsG0780039668.01.T01:CDS
GGAAACGGGCGGGGCCTTTG+CGG 0.378068 7:-67396295 None:intergenic
TACCTAGAGGTATCATTATC+GGG 0.400292 7:-67396650 None:intergenic
GCTCCTTCTGTTTCTGATAA+CGG 0.408848 7:-67396430 None:intergenic
ATACCTAGAGGTATCATTAT+CGG 0.410207 7:-67396651 None:intergenic
GGCCTTTGCGGTGGTGTGTG+TGG 0.413149 7:-67396283 None:intergenic
GCCTTTGCGGTGGTGTGTGT+GGG 0.415084 7:-67396282 None:intergenic
TTACAAATCACAGCACCTTC+AGG 0.419108 7:-67396551 None:intergenic
GCTGCTGAGGGTTTGTATAC+CGG 0.439273 7:+67396461 MsG0780039668.01.T01:CDS
ACCAGCAACTTGCCCAATCA+TGG 0.440792 7:-67397447 None:intergenic
CGAGGGAACGGAAACGGGCG+GGG 0.441434 7:-67396304 None:intergenic
AACTGAGAAGCCAATGTTGA+AGG 0.451466 7:+67397478 MsG0780039668.01.T01:CDS
CGTCGGTGACGACTCCTTTG+AGG 0.452604 7:-67396349 None:intergenic
GGAGGTAATCACCAACATAT+TGG 0.453068 7:+67397593 MsG0780039668.01.T01:CDS
TCGAGGGAACGGAAACGGGC+GGG 0.454887 7:-67396305 None:intergenic
CTCATTGCTGCCAAGAGGAC+TGG 0.455821 7:+67397665 MsG0780039668.01.T01:CDS
GTCAGACGTGATGCTCCTCC+TGG 0.456100 7:+67397629 MsG0780039668.01.T01:CDS
CGAAGTCGAGGGAACGGAAA+CGG 0.463299 7:-67396310 None:intergenic
GCATTACCGGCCTTCAACAT+TGG 0.473847 7:-67397488 None:intergenic
TACAGGATCAAGCTTCCATC+TGG 0.475040 7:+67397392 MsG0780039668.01.T01:intron
AGATTGTGCCAAGTGACTGC+AGG 0.475752 7:+67397423 MsG0780039668.01.T01:CDS
CCTCTTAGATCTATTCCTGA+AGG 0.484222 7:+67396536 MsG0780039668.01.T01:CDS
AACTGTTGGCCTAAGGTTCG+TGG 0.487779 7:+67397536 MsG0780039668.01.T01:CDS
TGTCATCCGTGCCCAACGTA+AGG 0.492175 7:+67396238 MsG0780039668.01.T01:CDS
CGTTTCCGTTCCCTCGACTT+CGG 0.496555 7:+67396311 MsG0780039668.01.T01:CDS
TCCCACACACACCACCGCAA+AGG 0.498632 7:+67396281 MsG0780039668.01.T01:CDS
GTGACTGCAGGGCCATGATT+GGG 0.501153 7:+67397435 MsG0780039668.01.T01:CDS
GCTCCTCCTGGACAGAAGGT+TGG 0.508354 7:+67397641 MsG0780039668.01.T01:CDS
GGAACCTGCTCCCTTACGTT+GGG 0.510705 7:-67396249 None:intergenic
CGTGCCCAACGTAAGGGAGC+AGG 0.512987 7:+67396245 MsG0780039668.01.T01:CDS
TCCTCTTCACTCTGAACTTG+TGG 0.513229 7:-67397514 None:intergenic
CCTAAGACGACCAGTCCTCT+TGG 0.514272 7:-67397675 None:intergenic
ATTGGGCAAGTTGCTGGTGG+TGG 0.517875 7:+67397452 MsG0780039668.01.T01:CDS
ATGAGACCAACCTTCTGTCC+AGG 0.521573 7:-67397647 None:intergenic
AACGGGCGGGGCCTTTGCGG+TGG 0.529015 7:-67396292 None:intergenic
ATCATGGCCCTGCAGTCACT+TGG 0.530422 7:-67397431 None:intergenic
GCAAGAGGAGCACCACGACC+TGG 0.531863 7:-67396383 None:intergenic
TGCTGTGATTTGTAATGTTG+AGG 0.534385 7:+67396559 MsG0780039668.01.T01:CDS
ACCGACGTCATCCACGATCC+AGG 0.536026 7:+67396365 MsG0780039668.01.T01:CDS
AGCATCACGTCTGACAGTAC+TGG 0.537912 7:-67397621 None:intergenic
TTGGTGATTACCTCCTCCGT+GGG 0.541006 7:-67397585 None:intergenic
GTTGAGCATCCCCACGGAGG+AGG 0.543276 7:+67397575 MsG0780039668.01.T01:CDS
GTCATCCACGATCCAGGTCG+TGG 0.543374 7:+67396371 MsG0780039668.01.T01:CDS
CGTTGCGTTCGCCGAAGTCG+AGG 0.545445 7:-67396322 None:intergenic
GAAGAGGAACTGTTGGCCTA+AGG 0.546745 7:+67397529 MsG0780039668.01.T01:CDS
TGTAATGTTGAGGGTCATGT+TGG 0.553570 7:+67396569 MsG0780039668.01.T01:CDS
TCGTGGTGCTCCTCTTGCTA+AGG 0.557816 7:+67396388 MsG0780039668.01.T01:CDS
ATGATTGGGCAAGTTGCTGG+TGG 0.561494 7:+67397449 MsG0780039668.01.T01:CDS
CTTCTGTTTCTGATAACGGA+AGG 0.563357 7:-67396426 None:intergenic
TGATGCTCCTCCTGGACAGA+AGG 0.566122 7:+67397637 MsG0780039668.01.T01:CDS
CGGAACCTGCTCCCTTACGT+TGG 0.568166 7:-67396250 None:intergenic
TCTGATAACGGAAGGGATGA+CGG 0.568851 7:-67396418 None:intergenic
GCTGTGATTTGTAATGTTGA+GGG 0.572615 7:+67396560 MsG0780039668.01.T01:CDS
TTCTGTTTCTGATAACGGAA+GGG 0.573577 7:-67396425 None:intergenic
GAACGCAACGGTTACCTCAA+AGG 0.574638 7:+67396335 MsG0780039668.01.T01:CDS
GTCGAGGGAACGGAAACGGG+CGG 0.575776 7:-67396306 None:intergenic
GTTCGCCGAAGTCGAGGGAA+CGG 0.578749 7:-67396316 None:intergenic
CTGCTCCCTTACGTTGGGCA+CGG 0.579845 7:-67396244 None:intergenic
GAGAAGCCAATGTTGAAGGC+CGG 0.581735 7:+67397482 MsG0780039668.01.T01:CDS
TCAGAGTGAAGAGGAACTGT+TGG 0.582492 7:+67397522 MsG0780039668.01.T01:CDS
GTCATCCGTGCCCAACGTAA+GGG 0.585900 7:+67396239 MsG0780039668.01.T01:CDS
GTGTGTGTGGGATTTGAAAA+CGG 0.586676 7:-67396270 None:intergenic
CCTTCAGGAATAGATCTAAG+AGG 0.588316 7:-67396536 None:intergenic
ACCGCAGTAAATAAACTGAC+CGG 0.589138 7:-67396480 None:intergenic
GAGCACCACGACCTGGATCG+TGG 0.593947 7:-67396376 None:intergenic
ATAGCAACACCACGAACCTT+AGG 0.594313 7:-67397545 None:intergenic
ACCGGTCAGTTTATTTACTG+CGG 0.597635 7:+67396479 MsG0780039668.01.T01:CDS
ACAATCTTCTTGGCACCAGA+TGG 0.597976 7:-67397407 None:intergenic
GATTGTGCCAAGTGACTGCA+GGG 0.598947 7:+67397424 MsG0780039668.01.T01:CDS
CTCGACTTCGGCGAACGCAA+CGG 0.608500 7:+67396323 MsG0780039668.01.T01:CDS
GTTGCGTTCGCCGAAGTCGA+GGG 0.613842 7:-67396321 None:intergenic
AAGAGGACTGGTCGTCTTAG+GGG 0.622786 7:+67397677 MsG0780039668.01.T01:CDS
CGGAAAGTCACCTTAGCAAG+AGG 0.624941 7:-67396398 None:intergenic
GTTGGTGATTACCTCCTCCG+TGG 0.630355 7:-67397586 None:intergenic
ACCCCGATAATGATACCTCT+AGG 0.637049 7:+67396648 MsG0780039668.01.T01:CDS
TTGGTCTCATTGCTGCCAAG+AGG 0.653221 7:+67397660 MsG0780039668.01.T01:CDS
TACTGGCATGACCAATATGT+TGG 0.654768 7:-67397604 None:intergenic
ACCACAAGTTCAGAGTGAAG+AGG 0.655234 7:+67397513 MsG0780039668.01.T01:CDS
AATCCTGTTGAGCATCCCCA+CGG 0.655918 7:+67397569 MsG0780039668.01.T01:CDS
ACCTAGAGGTATCATTATCG+GGG 0.665372 7:-67396649 None:intergenic
CTTCCGTTATCAGAAACAGA+AGG 0.665450 7:+67396427 MsG0780039668.01.T01:CDS
GCAAAACATTACCAACAACA+AGG 0.667504 7:-67396514 None:intergenic
GAGGGTCATGTTGGTGACCG+TGG 0.688077 7:+67396578 MsG0780039668.01.T01:CDS
AGACCAACCTTCTGTCCAGG+AGG 0.695738 7:-67397644 None:intergenic
CAAAACATTACCAACAACAA+GGG 0.700199 7:-67396513 None:intergenic
ACCTGGATCGTGGATGACGT+CGG 0.724990 7:-67396366 None:intergenic
CCTGTTGAGCATCCCCACGG+AGG 0.744930 7:+67397572 MsG0780039668.01.T01:CDS
TGGTGATTACCTCCTCCGTG+GGG 0.779827 7:-67397584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCGATTAATATTAATTTA+AGG + Chr7:67397270-67397289 MsG0780039668.01.T01:intron 10.0%
!!! AAATTTTTAATCAGATTTTA+AGG - Chr7:67397164-67397183 None:intergenic 10.0%
!!! CAATATAATACTTTTTTATT+AGG + Chr7:67397305-67397324 MsG0780039668.01.T01:intron 10.0%
!!! TTAAAAATTTATACCTTTTT+TGG + Chr7:67397174-67397193 MsG0780039668.01.T01:intron 10.0%
!!! TTATTTGATGTTATTTTTAA+TGG + Chr7:67396699-67396718 MsG0780039668.01.T01:intron 10.0%
!!! AAATTTGTTTTGTAAATTCA+TGG + Chr7:67397053-67397072 MsG0780039668.01.T01:intron 15.0%
!!! GTTTGATTATATTATGATTT+TGG + Chr7:67396723-67396742 MsG0780039668.01.T01:intron 15.0%
!!! TATCATTTAAAATCCAAAAA+AGG - Chr7:67397190-67397209 None:intergenic 15.0%
!!! TATGATTTTGGAATTAAATT+TGG + Chr7:67396735-67396754 MsG0780039668.01.T01:intron 15.0%
!!! TTATATTTTTGGATTGATTT+TGG + Chr7:67396911-67396930 MsG0780039668.01.T01:intron 15.0%
!! AAGAATAAAAATATACCTAG+AGG - Chr7:67396666-67396685 None:intergenic 20.0%
!! AATTAAATTTGGTATTTGAG+TGG + Chr7:67396746-67396765 MsG0780039668.01.T01:intron 20.0%
!! TCAATAGAAATATTTGATCT+GGG + Chr7:67396779-67396798 MsG0780039668.01.T01:intron 20.0%
!! TTCAATAGAAATATTTGATC+TGG + Chr7:67396778-67396797 MsG0780039668.01.T01:intron 20.0%
!!! AAAATACTCTGAAAACTAAT+TGG - Chr7:67397218-67397237 None:intergenic 20.0%
!!! GTATTTTTAGTAGATTGAAT+TGG + Chr7:67396933-67396952 MsG0780039668.01.T01:intron 20.0%
! CTAGCACAATATAAACAAAT+CGG - Chr7:67397108-67397127 None:intergenic 25.0%
! TAGCACAATATAAACAAATC+GGG - Chr7:67397107-67397126 None:intergenic 25.0%
! TGATTTCAATGCAGAAAATT+GGG + Chr7:67397133-67397152 MsG0780039668.01.T01:intron 25.0%
! TTGATTTCAATGCAGAAAAT+TGG + Chr7:67397132-67397151 MsG0780039668.01.T01:intron 25.0%
! TTTAGGTGTATACTTGATTT+AGG + Chr7:67397342-67397361 MsG0780039668.01.T01:intron 25.0%
!! GAATTGATGTTAGTGTTTTT+CGG + Chr7:67396867-67396886 MsG0780039668.01.T01:intron 25.0%
!!! AGGGTTTTGTTTGATTATTT+AGG + Chr7:67397325-67397344 MsG0780039668.01.T01:intron 25.0%
!!! CAAATTTGATTTGTTTAAGC+TGG + Chr7:67396983-67397002 MsG0780039668.01.T01:intron 25.0%
!!! TGAAATGAGTTTTGTTATAC+AGG + Chr7:67397375-67397394 MsG0780039668.01.T01:intron 25.0%
AGATTGAATTGGAATTGAGT+GGG + Chr7:67396944-67396963 MsG0780039668.01.T01:intron 30.0%
CAAAACATTACCAACAACAA+GGG - Chr7:67396516-67396535 None:intergenic 30.0%
GTTTATTTACTGCGGTAAAA+AGG + Chr7:67396487-67396506 MsG0780039668.01.T01:CDS 30.0%
TAGATTGAATTGGAATTGAG+TGG + Chr7:67396943-67396962 MsG0780039668.01.T01:intron 30.0%
! ATACTCTGAAAACTAATTGG+AGG - Chr7:67397215-67397234 None:intergenic 30.0%
!! ATACCTAGAGGTATCATTAT+CGG - Chr7:67396654-67396673 None:intergenic 30.0%
!! ATGTTAGTGTTTTTCGGTTA+TGG + Chr7:67396873-67396892 MsG0780039668.01.T01:intron 30.0%
ATCGGGTTCAAAATTCATCT+TGG - Chr7:67397090-67397109 None:intergenic 35.0%
GCAAAACATTACCAACAACA+AGG - Chr7:67396517-67396536 None:intergenic 35.0%
TGAAGTGAAGTCATGGATAT+AGG + Chr7:67397245-67397264 MsG0780039668.01.T01:intron 35.0%
! GCTGTGATTTGTAATGTTGA+GGG + Chr7:67396560-67396579 MsG0780039668.01.T01:CDS 35.0%
! TGCTGTGATTTGTAATGTTG+AGG + Chr7:67396559-67396578 MsG0780039668.01.T01:CDS 35.0%
!! TACCTAGAGGTATCATTATC+GGG - Chr7:67396653-67396672 None:intergenic 35.0%
!! TTCTGTTTCTGATAACGGAA+GGG - Chr7:67396428-67396447 None:intergenic 35.0%
AACTGAGAAGCCAATGTTGA+AGG + Chr7:67397478-67397497 MsG0780039668.01.T01:CDS 40.0%
ACCGCAGTAAATAAACTGAC+CGG - Chr7:67396483-67396502 None:intergenic 40.0%
ACCGGTCAGTTTATTTACTG+CGG + Chr7:67396479-67396498 MsG0780039668.01.T01:CDS 40.0%
CCTCTTAGATCTATTCCTGA+AGG + Chr7:67396536-67396555 MsG0780039668.01.T01:CDS 40.0%
CCTTCAGGAATAGATCTAAG+AGG - Chr7:67396539-67396558 None:intergenic 40.0%
CTTCCGTTATCAGAAACAGA+AGG + Chr7:67396427-67396446 MsG0780039668.01.T01:CDS 40.0%
GAACTTGTGGTAAGCATTAC+CGG - Chr7:67397504-67397523 None:intergenic 40.0%
GGAGGTAATCACCAACATAT+TGG + Chr7:67397593-67397612 MsG0780039668.01.T01:CDS 40.0%
GTGTGTGTGGGATTTGAAAA+CGG - Chr7:67396273-67396292 None:intergenic 40.0%
TACTGGCATGACCAATATGT+TGG - Chr7:67397607-67397626 None:intergenic 40.0%
TCATGACTGAAGTGAAGTCA+TGG + Chr7:67397238-67397257 MsG0780039668.01.T01:intron 40.0%
TGTAATGTTGAGGGTCATGT+TGG + Chr7:67396569-67396588 MsG0780039668.01.T01:CDS 40.0%
TTACAAATCACAGCACCTTC+AGG - Chr7:67396554-67396573 None:intergenic 40.0%
! AAAAAGGCTACCCTTGTTGT+TGG + Chr7:67396503-67396522 MsG0780039668.01.T01:CDS 40.0%
! AAGCTCTAGCAAAAACACCA+CGG - Chr7:67396598-67396617 None:intergenic 40.0%
!! ACCTAGAGGTATCATTATCG+GGG - Chr7:67396652-67396671 None:intergenic 40.0%
!! CTTCTGTTTCTGATAACGGA+AGG - Chr7:67396429-67396448 None:intergenic 40.0%
!! GCTCCTTCTGTTTCTGATAA+CGG - Chr7:67396433-67396452 None:intergenic 40.0%
ACAATCTTCTTGGCACCAGA+TGG - Chr7:67397410-67397429 None:intergenic 45.0%
ACCACAAGTTCAGAGTGAAG+AGG + Chr7:67397513-67397532 MsG0780039668.01.T01:CDS 45.0%
ACCCCGATAATGATACCTCT+AGG + Chr7:67396648-67396667 MsG0780039668.01.T01:CDS 45.0%
ATAGCAACACCACGAACCTT+AGG - Chr7:67397548-67397567 None:intergenic 45.0%
GTCACTTGGCACAATCTTCT+TGG - Chr7:67397420-67397439 None:intergenic 45.0%
TACAGGATCAAGCTTCCATC+TGG + Chr7:67397392-67397411 MsG0780039668.01.T01:intron 45.0%
TCAGAGTGAAGAGGAACTGT+TGG + Chr7:67397522-67397541 MsG0780039668.01.T01:CDS 45.0%
TCCTCTTCACTCTGAACTTG+TGG - Chr7:67397517-67397536 None:intergenic 45.0%
!! GGTGTTTTTGCTAGAGCTTC+TGG + Chr7:67396599-67396618 MsG0780039668.01.T01:CDS 45.0%
!! TCTGATAACGGAAGGGATGA+CGG - Chr7:67396421-67396440 None:intergenic 45.0%
!!! AATATAATACTTTTTTATTA+GGG + Chr7:67397306-67397325 MsG0780039668.01.T01:intron 5.0%
!!! TTATTATTTGATTATATTTT+TGG + Chr7:67396900-67396919 MsG0780039668.01.T01:intron 5.0%
AATCCTGTTGAGCATCCCCA+CGG + Chr7:67397569-67397588 MsG0780039668.01.T01:CDS 50.0%
ACCAGCAACTTGCCCAATCA+TGG - Chr7:67397450-67397469 None:intergenic 50.0%
AGATTGTGCCAAGTGACTGC+AGG + Chr7:67397423-67397442 MsG0780039668.01.T01:CDS 50.0%
AGCATCACGTCTGACAGTAC+TGG - Chr7:67397624-67397643 None:intergenic 50.0%
ATGAGACCAACCTTCTGTCC+AGG - Chr7:67397650-67397669 None:intergenic 50.0%
ATGATTGGGCAAGTTGCTGG+TGG + Chr7:67397449-67397468 MsG0780039668.01.T01:CDS 50.0%
CGGAAAGTCACCTTAGCAAG+AGG - Chr7:67396401-67396420 None:intergenic 50.0%
GAACGCAACGGTTACCTCAA+AGG + Chr7:67396335-67396354 MsG0780039668.01.T01:CDS 50.0%
GAGAAGCCAATGTTGAAGGC+CGG + Chr7:67397482-67397501 MsG0780039668.01.T01:CDS 50.0%
GATTGTGCCAAGTGACTGCA+GGG + Chr7:67397424-67397443 MsG0780039668.01.T01:CDS 50.0%
GCATTACCGGCCTTCAACAT+TGG - Chr7:67397491-67397510 None:intergenic 50.0%
GCTGCTGAGGGTTTGTATAC+CGG + Chr7:67396461-67396480 MsG0780039668.01.T01:CDS 50.0%
TTGGTCTCATTGCTGCCAAG+AGG + Chr7:67397660-67397679 MsG0780039668.01.T01:CDS 50.0%
! AACTGTTGGCCTAAGGTTCG+TGG + Chr7:67397536-67397555 MsG0780039668.01.T01:CDS 50.0%
! GAAGAGGAACTGTTGGCCTA+AGG + Chr7:67397529-67397548 MsG0780039668.01.T01:CDS 50.0%
! GAGCTTTTCGTTGCTGCTGA+GGG + Chr7:67396449-67396468 MsG0780039668.01.T01:CDS 50.0%
! TTGGTGATTACCTCCTCCGT+GGG - Chr7:67397588-67397607 None:intergenic 50.0%
!! AAGAGGACTGGTCGTCTTAG+GGG + Chr7:67397677-67397696 MsG0780039668.01.T01:CDS 50.0%
!! CAAGAGGACTGGTCGTCTTA+GGG + Chr7:67397676-67397695 MsG0780039668.01.T01:CDS 50.0%
ACCTGGATCGTGGATGACGT+CGG - Chr7:67396369-67396388 None:intergenic 55.0%
AGACCAACCTTCTGTCCAGG+AGG - Chr7:67397647-67397666 None:intergenic 55.0%
AGTGACTGCAGGGCCATGAT+TGG + Chr7:67397434-67397453 MsG0780039668.01.T01:CDS 55.0%
ATCATGGCCCTGCAGTCACT+TGG - Chr7:67397434-67397453 None:intergenic 55.0%
ATTGGGCAAGTTGCTGGTGG+TGG + Chr7:67397452-67397471 MsG0780039668.01.T01:CDS 55.0%
CCTAAGACGACCAGTCCTCT+TGG - Chr7:67397678-67397697 None:intergenic 55.0%
CGAAGTCGAGGGAACGGAAA+CGG - Chr7:67396313-67396332 None:intergenic 55.0%
CGTTTCCGTTCCCTCGACTT+CGG + Chr7:67396311-67396330 MsG0780039668.01.T01:CDS 55.0%
CTCATTGCTGCCAAGAGGAC+TGG + Chr7:67397665-67397684 MsG0780039668.01.T01:CDS 55.0%
GAAGTCGAGGGAACGGAAAC+GGG - Chr7:67396312-67396331 None:intergenic 55.0%
GCCATGATTGGGCAAGTTGC+TGG + Chr7:67397446-67397465 MsG0780039668.01.T01:CDS 55.0%
GGAACCTGCTCCCTTACGTT+GGG - Chr7:67396252-67396271 None:intergenic 55.0%
GTCATCCGTGCCCAACGTAA+GGG + Chr7:67396239-67396258 MsG0780039668.01.T01:CDS 55.0%
GTGACTGCAGGGCCATGATT+GGG + Chr7:67397435-67397454 MsG0780039668.01.T01:CDS 55.0%
TCGTGGTGCTCCTCTTGCTA+AGG + Chr7:67396388-67396407 MsG0780039668.01.T01:CDS 55.0%
TGATGCTCCTCCTGGACAGA+AGG + Chr7:67397637-67397656 MsG0780039668.01.T01:CDS 55.0%
TGGTGATTACCTCCTCCGTG+GGG - Chr7:67397587-67397606 None:intergenic 55.0%
TGTCATCCGTGCCCAACGTA+AGG + Chr7:67396238-67396257 MsG0780039668.01.T01:CDS 55.0%
! GGAGCTTTTCGTTGCTGCTG+AGG + Chr7:67396448-67396467 MsG0780039668.01.T01:CDS 55.0%
!! CCAAGAGGACTGGTCGTCTT+AGG + Chr7:67397675-67397694 MsG0780039668.01.T01:CDS 55.0%
!! GTTGGTGATTACCTCCTCCG+TGG - Chr7:67397589-67397608 None:intergenic 55.0%
ACCGACGTCATCCACGATCC+AGG + Chr7:67396365-67396384 MsG0780039668.01.T01:CDS 60.0%
CGGAACCTGCTCCCTTACGT+TGG - Chr7:67396253-67396272 None:intergenic 60.0%
CGTCGGTGACGACTCCTTTG+AGG - Chr7:67396352-67396371 None:intergenic 60.0%
CTCGACTTCGGCGAACGCAA+CGG + Chr7:67396323-67396342 MsG0780039668.01.T01:CDS 60.0%
CTGCTCCCTTACGTTGGGCA+CGG - Chr7:67396247-67396266 None:intergenic 60.0%
GCCTTTGCGGTGGTGTGTGT+GGG - Chr7:67396285-67396304 None:intergenic 60.0%
GCTCCTCCTGGACAGAAGGT+TGG + Chr7:67397641-67397660 MsG0780039668.01.T01:CDS 60.0%
GTCAGACGTGATGCTCCTCC+TGG + Chr7:67397629-67397648 MsG0780039668.01.T01:CDS 60.0%
GTCATCCACGATCCAGGTCG+TGG + Chr7:67396371-67396390 MsG0780039668.01.T01:CDS 60.0%
GTTCGCCGAAGTCGAGGGAA+CGG - Chr7:67396319-67396338 None:intergenic 60.0%
GTTGCGTTCGCCGAAGTCGA+GGG - Chr7:67396324-67396343 None:intergenic 60.0%
TCCCACACACACCACCGCAA+AGG + Chr7:67396281-67396300 MsG0780039668.01.T01:CDS 60.0%
!! GAGGGTCATGTTGGTGACCG+TGG + Chr7:67396578-67396597 MsG0780039668.01.T01:CDS 60.0%
CCTCCGTGGGGATGCTCAAC+AGG - Chr7:67397575-67397594 None:intergenic 65.0%
CCTGTTGAGCATCCCCACGG+AGG + Chr7:67397572-67397591 MsG0780039668.01.T01:CDS 65.0%
CGTGCCCAACGTAAGGGAGC+AGG + Chr7:67396245-67396264 MsG0780039668.01.T01:CDS 65.0%
CGTTGCGTTCGCCGAAGTCG+AGG - Chr7:67396325-67396344 None:intergenic 65.0%
GAGCACCACGACCTGGATCG+TGG - Chr7:67396379-67396398 None:intergenic 65.0%
GGCCTTTGCGGTGGTGTGTG+TGG - Chr7:67396286-67396305 None:intergenic 65.0%
GTCGAGGGAACGGAAACGGG+CGG - Chr7:67396309-67396328 None:intergenic 65.0%
GTTGAGCATCCCCACGGAGG+AGG + Chr7:67397575-67397594 MsG0780039668.01.T01:CDS 65.0%
TCGAGGGAACGGAAACGGGC+GGG - Chr7:67396308-67396327 None:intergenic 65.0%
!! GCAAGAGGAGCACCACGACC+TGG - Chr7:67396386-67396405 None:intergenic 65.0%
CGAGGGAACGGAAACGGGCG+GGG - Chr7:67396307-67396326 None:intergenic 70.0%
GGAAACGGGCGGGGCCTTTG+CGG - Chr7:67396298-67396317 None:intergenic 70.0%
AACGGGCGGGGCCTTTGCGG+TGG - Chr7:67396295-67396314 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 67396230 67397736 67396230 ID=MsG0780039668.01;Name=MsG0780039668.01
Chr7 mRNA 67396230 67397736 67396230 ID=MsG0780039668.01.T01;Parent=MsG0780039668.01;Name=MsG0780039668.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|1|1|2|0|259
Chr7 exon 67396230 67396669 67396230 ID=MsG0780039668.01.T01:exon:13601;Parent=MsG0780039668.01.T01
Chr7 exon 67397397 67397736 67397397 ID=MsG0780039668.01.T01:exon:13602;Parent=MsG0780039668.01.T01
Chr7 CDS 67396230 67396669 67396230 ID=MsG0780039668.01.T01:cds;Parent=MsG0780039668.01.T01
Chr7 CDS 67397397 67397736 67397397 ID=MsG0780039668.01.T01:cds;Parent=MsG0780039668.01.T01
Gene Sequence

>MsG0780039668.01.T01

ATGGGTCGTGTCATCCGTGCCCAACGTAAGGGAGCAGGTTCCGTTTTCAAATCCCACACACACCACCGCAAAGGCCCCGCCCGTTTCCGTTCCCTCGACTTCGGCGAACGCAACGGTTACCTCAAAGGAGTCGTCACCGACGTCATCCACGATCCAGGTCGTGGTGCTCCTCTTGCTAAGGTGACTTTCCGTCATCCCTTCCGTTATCAGAAACAGAAGGAGCTTTTCGTTGCTGCTGAGGGTTTGTATACCGGTCAGTTTATTTACTGCGGTAAAAAGGCTACCCTTGTTGTTGGTAATGTTTTGCCTCTTAGATCTATTCCTGAAGGTGCTGTGATTTGTAATGTTGAGGGTCATGTTGGTGACCGTGGTGTTTTTGCTAGAGCTTCTGGTGATTATGCTATTGTTATCAGTCACAACCCCGATAATGATACCTCTAGGATCAAGCTTCCATCTGGTGCCAAGAAGATTGTGCCAAGTGACTGCAGGGCCATGATTGGGCAAGTTGCTGGTGGTGGAAGAACTGAGAAGCCAATGTTGAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGTTGGCCTAAGGTTCGTGGTGTTGCTATGAATCCTGTTGAGCATCCCCACGGAGGAGGTAATCACCAACATATTGGTCATGCCAGTACTGTCAGACGTGATGCTCCTCCTGGACAGAAGGTTGGTCTCATTGCTGCCAAGAGGACTGGTCGTCTTAGGGGTCAAGCTGCTGCAAGTGCTGCTAAAGCCGATAAATAA
Protein sequence

>MsG0780039668.01.T01

MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYQKQKELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAASAAKADK*