AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031377.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031377.01.T01 MTR_6g021800 100.000 447 0 0 1 447 1 447 0.0 918
MsG0680031377.01.T01 MTR_6g021805 100.000 447 0 0 1 447 1 447 0.0 918
MsG0680031377.01.T01 MTR_1g495705 96.652 448 14 1 1 447 1 448 0.0 895
MsG0680031377.01.T01 MTR_1g095650 96.652 448 14 1 1 447 1 448 0.0 895
MsG0680031377.01.T01 MTR_1g095703 96.429 448 15 1 1 447 1 448 0.0 895
MsG0680031377.01.T01 MTR_4g014810 95.302 447 21 0 1 447 1 447 0.0 891
MsG0680031377.01.T01 MTR_1g013680 95.227 440 18 1 1 437 1 440 0.0 865
MsG0680031377.01.T01 MTR_1g085410 81.336 434 81 0 1 434 1 434 0.0 739
MsG0680031377.01.T01 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 726
MsG0680031377.01.T01 MTR_1g101870 80.182 439 82 3 1 439 1 434 0.0 724
MsG0680031377.01.T01 MTR_1g024175 78.802 434 92 0 1 434 1 434 0.0 724
MsG0680031377.01.T01 MTR_8g014590 77.951 449 96 2 1 446 1 449 0.0 713
MsG0680031377.01.T01 MTR_1g095650 95.965 347 13 1 102 447 1 347 0.0 688
MsG0680031377.01.T01 MTR_2g082730 70.682 440 112 2 1 438 1 425 0.0 639
MsG0680031377.01.T01 MTR_5g037350 66.383 470 121 1 3 435 13 482 0.0 629
MsG0680031377.01.T01 MTR_1g089520 69.406 438 116 3 4 440 5 425 0.0 623
MsG0680031377.01.T01 MTR_2g082665 65.682 440 108 2 1 438 1 399 0.0 581
MsG0680031377.01.T01 MTR_2g037420 63.053 452 121 4 1 447 1 411 0.0 558
MsG0680031377.01.T01 MTR_2g080210 64.368 435 119 4 1 432 1 402 0.0 549
MsG0680031377.01.T01 MTR_8g013910 63.029 449 131 5 1 433 1 430 0.0 546
MsG0680031377.01.T01 MTR_8g008740 78.154 325 70 1 1 324 1 325 0.0 538
MsG0680031377.01.T01 MTR_1g112460 64.094 298 65 4 155 446 1 262 4.06e-124 362
MsG0680031377.01.T01 MTR_1g495735 74.129 201 42 1 240 430 106 306 3.45e-99 299
MsG0680031377.01.T01 MTR_1g495735 71.698 53 15 0 21 73 2 54 4.83e-17 82.0
MsG0680031377.01.T01 MTR_6g080420 37.731 432 255 6 5 428 89 514 1.25e-96 300
MsG0680031377.01.T01 MTR_8g106700 37.731 432 259 6 4 429 49 476 1.50e-93 291
MsG0680031377.01.T01 MTR_8g106700 37.731 432 259 6 4 429 43 470 2.25e-93 290
MsG0680031377.01.T01 MTR_8g106700 37.731 432 259 6 4 429 70 497 4.16e-93 290
MsG0680031377.01.T01 MTR_8g087950 35.566 433 270 6 7 433 275 704 2.11e-90 289
MsG0680031377.01.T01 MTR_8g087950 35.566 433 270 6 7 433 348 777 1.13e-89 289
MsG0680031377.01.T01 MTR_1g101880 86.364 154 21 0 1 154 1 154 1.22e-89 273
MsG0680031377.01.T01 MTR_4g054970 55.372 242 79 4 193 431 50 265 2.09e-79 248
MsG0680031377.01.T01 MTR_4g054970 77.273 44 10 0 1 44 1 44 4.59e-13 69.7
MsG0680031377.01.T01 MTR_1g024165 81.884 138 25 0 8 145 12 149 2.00e-78 240
MsG0680031377.01.T01 MTR_8g014950 75.490 102 25 0 3 104 4 105 2.62e-47 158
MsG0680031377.01.T01 MTR_7g094460 30.227 440 243 14 3 429 59 447 1.71e-45 164
MsG0680031377.01.T01 MTR_7g098190 53.892 167 51 5 56 220 10 152 1.19e-42 149
MsG0680031377.01.T01 MTR_3g076660 30.631 444 247 15 3 429 88 487 5.34e-42 155
MsG0680031377.01.T01 MTR_2g021300 29.385 439 248 12 3 429 46 434 1.11e-41 153
MsG0680031377.01.T01 MTR_8g014960 62.195 82 31 0 213 294 2 83 2.91e-27 107
MsG0680031377.01.T01 MTR_3g097250 26.103 272 144 9 9 272 85 307 2.93e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031377.01.T01 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT5G60390 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07920 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07940 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07930 95.516 446 20 0 1 446 1 446 0.0 890
MsG0680031377.01.T01 AT1G07930 98.824 255 3 0 1 255 1 255 0.0 530
MsG0680031377.01.T01 AT1G07930 90.517 116 11 0 331 446 254 369 1.84e-68 223
MsG0680031377.01.T01 AT1G18070 37.412 425 258 5 5 424 99 520 6.80e-94 293
MsG0680031377.01.T01 AT1G18070 37.412 425 258 5 5 424 99 520 6.80e-94 293
MsG0680031377.01.T01 AT1G18070 36.697 436 257 6 5 424 99 531 1.07e-90 285
MsG0680031377.01.T01 AT5G10630 35.765 425 265 5 7 426 239 660 1.89e-90 288
MsG0680031377.01.T01 AT5G10630 35.765 425 265 5 7 426 240 661 1.94e-90 288
MsG0680031377.01.T01 AT5G10630 35.765 425 265 5 7 426 240 661 1.94e-90 288
MsG0680031377.01.T01 AT5G10630 35.765 425 265 5 7 426 310 731 1.01e-89 288
MsG0680031377.01.T01 AT5G10630 35.765 425 265 5 7 426 315 736 1.14e-89 288
MsG0680031377.01.T01 AT1G35550 77.885 104 23 0 335 438 1 104 5.73e-54 176
MsG0680031377.01.T01 AT4G20360 30.594 438 255 10 3 429 75 474 1.30e-44 162
MsG0680031377.01.T01 AT4G20360 30.594 438 255 10 3 429 75 474 1.30e-44 162
MsG0680031377.01.T01 AT4G02930 29.977 437 249 13 3 429 63 452 2.06e-44 161
MsG0680031377.01.T01 AT2G31060 25.000 264 160 8 9 263 61 295 1.61e-12 70.1
MsG0680031377.01.T01 AT2G31060 24.615 260 162 7 9 263 61 291 2.26e-11 66.6
MsG0680031377.01.T01 AT5G08650 27.037 270 144 10 9 272 88 310 2.47e-11 66.2
MsG0680031377.01.T01 AT5G08650 27.037 270 144 10 9 272 88 310 2.74e-11 66.2

Find 158 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGGTATGGTTGTGACTTT+TGG 0.190241 6:+19369167 MsG0680031377.01.T01:CDS
GGCTTGTCTGTGGGTCTCTT+TGG 0.228629 6:-19369059 None:intergenic
TTTCTAAAGGCAGCTATATA+AGG 0.279265 6:+19369948 MsG0680031377.01.T01:three_prime_UTR
GGTTTGATAATTTATGTCTA+TGG 0.286823 6:+19370064 MsG0680031377.01.T01:three_prime_UTR
GTTCTGACATCACTTCTTCT+TGG 0.300532 6:-19369714 None:intergenic
CTTCTTCTTGGCAGCAGCCT+TGG 0.330252 6:-19369702 None:intergenic
GCTCTCACTGAAGCTCTTCC+AGG 0.343392 6:+19369239 MsG0680031377.01.T01:CDS
GTCTCTTTGGCTCGTTGATC+TGG 0.343863 6:-19369046 None:intergenic
TTGCAAGATGTTTACAAGAT+TGG 0.346171 6:+19369095 MsG0680031377.01.T01:CDS
GCTCTTCTTGCCTTTACTCT+TGG 0.350552 6:+19368530 MsG0680031377.01.T01:CDS
TTCATCAAGAACATGATTAC+TGG 0.350652 6:+19368413 MsG0680031377.01.T01:CDS
CATATCAACATTGTCGTCAT+TGG 0.354281 6:+19368140 MsG0680031377.01.T01:CDS
TGCAGCTAAACTTACAGAAC+TGG 0.361784 6:+19369834 MsG0680031377.01.T01:three_prime_UTR
GTTTACAAGATTGGTGGTAT+TGG 0.363154 6:+19369104 MsG0680031377.01.T01:CDS
ATCACCGTTCTTCAAGAACT+TGG 0.370922 6:-19369519 None:intergenic
GGCAGCAGCCTTGGTGACCT+TGG 0.371301 6:-19369693 None:intergenic
AGAGAGAGACTGAGTGATAA+AGG 0.376933 6:-19366850 None:intergenic
ACCAGATCGCCTGTCGATCT+TGG 0.401564 6:-19369477 None:intergenic
AAGTTGGCAGCTTCCTTAGC+AGG 0.412392 6:-19369344 None:intergenic
ACCTGGCCTTCGAGTACTTA+GGG 0.418829 6:-19368860 None:intergenic
AGCAATTTGGCTTATCAAGT+TGG 0.423571 6:+19370103 MsG0680031377.01.T01:three_prime_UTR
ATACCTCAGCTGAAACGAAA+TGG 0.429887 6:-19366904 None:intergenic
ATGGGTTCTTGACAAGCTTA+AGG 0.430277 6:+19368292 MsG0680031377.01.T01:CDS
GTTCCCATCTCCGGATTTGA+AGG 0.431146 6:+19368954 MsG0680031377.01.T01:CDS
AAGCCTGAGGGGCTTGTCTG+TGG 0.432212 6:-19369069 None:intergenic
TCTGGAAAATCAACAACAAC+TGG 0.436226 6:+19368173 MsG0680031377.01.T01:CDS
AGCCTGAGGGGCTTGTCTGT+GGG 0.440652 6:-19369068 None:intergenic
CATGTTGTCACCTTCAAATC+CGG 0.442623 6:-19368964 None:intergenic
ATTCCCTTCGTTCCCATCTC+CGG 0.450165 6:+19368945 MsG0680031377.01.T01:CDS
ATGAACCACCCTGGTCAGAT+TGG 0.454810 6:+19369386 MsG0680031377.01.T01:CDS
TTCCTTAGCAGGGTCATCCT+TGG 0.456277 6:-19369333 None:intergenic
GGTCTCAACCACCATGGGCT+TGG 0.458699 6:-19369567 None:intergenic
CTTATCATTGACTCCACCAC+TGG 0.461752 6:+19368461 MsG0680031377.01.T01:CDS
ATGGAAGGTTGTTACTCGTT+CGG 0.464368 6:-19366885 None:intergenic
CTCAACCACCATGGGCTTGG+TGG 0.468734 6:-19369564 None:intergenic
AGCAGGGTCATCCTTGGAGT+TGG 0.470015 6:-19369327 None:intergenic
ACCAAGATCGACAGGCGATC+TGG 0.474000 6:+19369476 MsG0680031377.01.T01:CDS
CAAGATGTTTACAAGATTGG+TGG 0.475647 6:+19369098 MsG0680031377.01.T01:CDS
TAAGAACAGCACAATCAGCC+TGG 0.478298 6:-19368442 None:intergenic
TGCACAGTCATTGATGCTCC+TGG 0.479590 6:+19368380 MsG0680031377.01.T01:CDS
CTTCACGATTTCATCGTACC+TGG 0.484982 6:-19368877 None:intergenic
AGCCTTGGTGACCTTGGCTC+CGG 0.485376 6:-19369687 None:intergenic
TTCTTGAAGAACGGTGATGC+TGG 0.487044 6:+19369524 MsG0680031377.01.T01:CDS
GTCATTGGACATGTCGACTC+TGG 0.490675 6:+19368155 MsG0680031377.01.T01:CDS
TCAGTCTCTCTCTGCGGCTG+AGG 0.491965 6:+19366860 MsG0680031377.01.T01:five_prime_UTR
GTCACCTTCAAATCCGGAGA+TGG 0.495769 6:-19368958 None:intergenic
AGTTTCATCCTACTTGAAGA+AGG 0.496964 6:+19368902 MsG0680031377.01.T01:CDS
AGGAAATTATTAAATTGCAC+AGG 0.497709 6:-19370172 None:intergenic
TCCAAAAGTCACAACCATAC+CGG 0.497778 6:-19369168 None:intergenic
CTTAAGGCTGAGCGTGAAAG+AGG 0.501131 6:+19368308 MsG0680031377.01.T01:CDS
CATCAAGGCTGTGGAGAAGA+AGG 0.501366 6:+19369658 MsG0680031377.01.T01:CDS
CACCAACCTTGACTGGTACA+AGG 0.502465 6:+19368998 MsG0680031377.01.T01:CDS
TCATCCTACTTGAAGAAGGT+TGG 0.505639 6:+19368906 MsG0680031377.01.T01:CDS
GATCGACAGGCGATCTGGTA+AGG 0.506331 6:+19369481 MsG0680031377.01.T01:CDS
CACCCTGGTCAGATTGGAAA+CGG 0.512174 6:+19369392 MsG0680031377.01.T01:CDS
GACCCACAGACAAGCCCCTC+AGG 0.515484 6:+19369066 MsG0680031377.01.T01:CDS
TACAGAACTGGGTTCTTGAT+CGG 0.517099 6:+19369846 MsG0680031377.01.T01:three_prime_UTR
CTTGTACCAGTCAAGGTTGG+TGG 0.518944 6:-19368997 None:intergenic
TACCTGGCCTTCGAGTACTT+AGG 0.520657 6:-19368861 None:intergenic
ATCATTGACTCCACCACTGG+TGG 0.521304 6:+19368464 MsG0680031377.01.T01:CDS
AGAGGTCCACCAACCTTGAC+TGG 0.523105 6:+19368991 MsG0680031377.01.T01:CDS
CCGGTCTCAACACGTCCGAC+TGG 0.523632 6:-19369134 None:intergenic
TTTCCACAAGGCAATATCAA+TGG 0.524796 6:-19368336 None:intergenic
TTGAATCCGACATTGTCTCC+TGG 0.526013 6:-19369257 None:intergenic
TCAACCACCATGGGCTTGGT+GGG 0.529820 6:-19369563 None:intergenic
CAAATATAAATGATCATGAC+AGG 0.531759 6:+19370138 MsG0680031377.01.T01:three_prime_UTR
CTGCTTCACTCCAAGAGTAA+AGG 0.533157 6:-19368540 None:intergenic
CTTCCATTTCGTTTCAGCTG+AGG 0.534419 6:+19366901 MsG0680031377.01.T01:five_prime_UTR
AGCGTTCATTCAAGTACGCA+TGG 0.534658 6:+19368273 MsG0680031377.01.T01:CDS
CCAAAAGTCACAACCATACC+GGG 0.540748 6:-19369167 None:intergenic
ACTGGGTTCTTGATCGGCGA+TGG 0.543939 6:+19369852 MsG0680031377.01.T01:three_prime_UTR
GATGACTTGGGAAGTGAAGT+TGG 0.546093 6:-19369360 None:intergenic
TCCCTTGTACCAGTCAAGGT+TGG 0.546130 6:-19369000 None:intergenic
TATCCGTTTCCAATCTGACC+AGG 0.548901 6:-19369395 None:intergenic
AGGCAAGAAGAGCGTGCTCA+CGG 0.549857 6:-19368520 None:intergenic
CGGTATTGTGAAGCCCGGTA+TGG 0.551104 6:+19369154 MsG0680031377.01.T01:CDS
CCCCTAAGTACTCGAAGGCC+AGG 0.553487 6:+19368859 MsG0680031377.01.T01:CDS
CTTCGAGTACTTAGGGGTGG+TGG 0.553707 6:-19368853 None:intergenic
TTGATGAAATCACGATGTCC+AGG 0.556820 6:-19368398 None:intergenic
ATCTTGCAATGGAAGCCTGA+GGG 0.556985 6:-19369081 None:intergenic
TGTTGCTGTTGGTGTCATCA+AGG 0.557300 6:+19369643 MsG0680031377.01.T01:CDS
TCACCTTCAAATCCGGAGAT+GGG 0.557788 6:-19368957 None:intergenic
CATACCGGGCTTCACAATAC+CGG 0.558131 6:-19369153 None:intergenic
ACCAACCTTGACTGGTACAA+GGG 0.559612 6:+19368999 MsG0680031377.01.T01:CDS
GTAACCAACCTTCTTCAAGT+AGG 0.562921 6:-19368910 None:intergenic
GCAAAGGTCTCAACCACCAT+GGG 0.563446 6:-19369572 None:intergenic
TCACCGTTCTTCAAGAACTT+GGG 0.564250 6:-19369518 None:intergenic
CTCCAAGGATGACCCTGCTA+AGG 0.568950 6:+19369331 MsG0680031377.01.T01:CDS
TGATGCTGGTATCATTAAGA+TGG 0.569011 6:+19369538 MsG0680031377.01.T01:CDS
GGTGGTTCATGATGATGACT+TGG 0.569890 6:-19369373 None:intergenic
AACTTGTTACCAAGATCGAC+AGG 0.569913 6:+19369468 MsG0680031377.01.T01:CDS
AGCTTCAAAACCACCAGTGG+TGG 0.571917 6:-19368474 None:intergenic
TTGGTCCCTTGTACCAGTCA+AGG 0.575920 6:-19369004 None:intergenic
GACTGTGCAGTAGTACTTGG+TGG 0.578462 6:-19368366 None:intergenic
CCAGTCGGACGTGTTGAGAC+CGG 0.578770 6:+19369134 MsG0680031377.01.T01:CDS
GGCAAGAAGAGCGTGCTCAC+GGG 0.579779 6:-19368519 None:intergenic
TGTTAAGAATGTTGCTGTGA+AGG 0.579878 6:+19369280 MsG0680031377.01.T01:CDS
CATGATTACTGGAACCTCCC+AGG 0.581850 6:+19368424 MsG0680031377.01.T01:CDS
TCAAGAGCCTCAAGAAGAGT+TGG 0.584894 6:-19369023 None:intergenic
GAAGGATCCTACCGGAGCCA+AGG 0.587221 6:+19369676 MsG0680031377.01.T01:CDS
AACTTCAGTTGTCAAACCAG+TGG 0.589445 6:-19369192 None:intergenic
AATGACTGTGCAGTAGTACT+TGG 0.591989 6:-19368369 None:intergenic
GAAGCTGGTATCTCTAAGGA+TGG 0.592030 6:+19368491 MsG0680031377.01.T01:CDS
ATCTTGTAAACATCTTGCAA+TGG 0.592677 6:-19369092 None:intergenic
GAGGTGTGGCAATCGAGCAC+TGG 0.595189 6:-19369422 None:intergenic
TTTGCTGAATATCCTCCACT+TGG 0.598309 6:+19369590 MsG0680031377.01.T01:CDS
GGTCACTTGATCTACAAGCT+AGG 0.604596 6:+19368194 MsG0680031377.01.T01:CDS
AAGAACAGCACAATCAGCCT+GGG 0.607202 6:-19368441 None:intergenic
TGTTGGTGTCATCAAGGCTG+TGG 0.608422 6:+19369649 MsG0680031377.01.T01:CDS
AAATCCGGAGATGGGAACGA+AGG 0.610633 6:-19368949 None:intergenic
GATGGTTCCCACCAAGCCCA+TGG 0.611182 6:+19369556 MsG0680031377.01.T01:CDS
AATCCGGAGATGGGAACGAA+GGG 0.611560 6:-19368948 None:intergenic
GAGCCCAAGTTCTTGAAGAA+CGG 0.613464 6:+19369515 MsG0680031377.01.T01:CDS
GCGTTCATTCAAGTACGCAT+GGG 0.615188 6:+19368274 MsG0680031377.01.T01:CDS
ACTTCAGTTGTCAAACCAGT+GGG 0.615673 6:-19369191 None:intergenic
AGCAAAGGTCTCAACCACCA+TGG 0.617611 6:-19369573 None:intergenic
TTTCGTTGCATCCAACTCCA+AGG 0.619372 6:+19369316 MsG0680031377.01.T01:CDS
ATGCGTCAAACTGTTGCTGT+TGG 0.619748 6:+19369632 MsG0680031377.01.T01:CDS
GTGGAGAAGAAGGATCCTAC+CGG 0.623203 6:+19369668 MsG0680031377.01.T01:CDS
AAGGTGACAACATGATTGAG+AGG 0.624581 6:+19368973 MsG0680031377.01.T01:CDS
GAGACCGGTATTGTGAAGCC+CGG 0.625104 6:+19369149 MsG0680031377.01.T01:CDS
AGTTGGCAGCTTCCTTAGCA+GGG 0.628525 6:-19369343 None:intergenic
GGCCTTCGAGTACTTAGGGG+TGG 0.628555 6:-19368856 None:intergenic
TTACCATTGATATTGCCTTG+TGG 0.628909 6:+19368333 MsG0680031377.01.T01:CDS
CTCAGCTGAAACGAAATGGA+AGG 0.630534 6:-19366900 None:intergenic
TCTTGCAATGGAAGCCTGAG+GGG 0.631058 6:-19369080 None:intergenic
CAAGGGACCAACTCTTCTTG+AGG 0.634066 6:+19369016 MsG0680031377.01.T01:CDS
ATCTGGTAAGGAGATTGAGA+AGG 0.634092 6:+19369493 MsG0680031377.01.T01:CDS
GATGATCTGTTGTTGTAACA+AGG 0.635291 6:+19368562 MsG0680031377.01.T01:CDS
TGTGATCGAGAGATTCGAGA+AGG 0.638590 6:+19368232 MsG0680031377.01.T01:CDS
GCAGCTAAACTTACAGAACT+GGG 0.640637 6:+19369835 MsG0680031377.01.T01:three_prime_UTR
GAAGAAGTGATGTCAGAACA+TGG 0.641153 6:+19369718 MsG0680031377.01.T01:exon
CCTGGCCTTCGAGTACTTAG+GGG 0.644615 6:-19368859 None:intergenic
CACTTGATCTACAAGCTAGG+AGG 0.645428 6:+19368197 MsG0680031377.01.T01:CDS
TTGGTGACCTTGGCTCCGGT+AGG 0.648938 6:-19369683 None:intergenic
GTCATCATCATGAACCACCC+TGG 0.650188 6:+19369377 MsG0680031377.01.T01:CDS
GCTCTTCCAGGAGACAATGT+CGG 0.651488 6:+19369251 MsG0680031377.01.T01:CDS
CACCACCCCTAAGTACTCGA+AGG 0.652068 6:+19368854 MsG0680031377.01.T01:CDS
AAACTTCACAGCAATGTGAG+AGG 0.653594 6:-19369441 None:intergenic
AACAGCACAATCAGCCTGGG+AGG 0.653730 6:-19368438 None:intergenic
CATCTTGCAATGGAAGCCTG+AGG 0.654491 6:-19369082 None:intergenic
ACAGCAAAACGTCCAAGTGG+AGG 0.656142 6:-19369602 None:intergenic
CAGGTACGATGAAATCGTGA+AGG 0.661162 6:+19368878 MsG0680031377.01.T01:CDS
ACCAGCTTCAAAACCACCAG+TGG 0.669846 6:-19368477 None:intergenic
TCACAGCAATGTGAGAGGTG+TGG 0.670228 6:-19369436 None:intergenic
AAGTGGAGGATATTCAGCAA+AGG 0.671437 6:-19369588 None:intergenic
TACCGGAGCCAAGGTCACCA+AGG 0.673582 6:+19369685 MsG0680031377.01.T01:CDS
CGTTTCCAATCTGACCAGGG+TGG 0.687081 6:-19369391 None:intergenic
ATCCGTTTCCAATCTGACCA+GGG 0.688739 6:-19369394 None:intergenic
CTGACAGCAAAACGTCCAAG+TGG 0.689307 6:-19369605 None:intergenic
GTGGTTCATGATGATGACTT+GGG 0.690284 6:-19369372 None:intergenic
GGTGGTCTCAAATTTCCACA+AGG 0.697133 6:-19368348 None:intergenic
GGTATTGGAACTGTGCCAGT+CGG 0.702004 6:+19369119 MsG0680031377.01.T01:CDS
GTCTGTTGAGATGCACCACG+AGG 0.705830 6:+19369217 MsG0680031377.01.T01:CDS
GCTGTGAAGGATCTCAAGCG+TGG 0.706441 6:+19369293 MsG0680031377.01.T01:CDS
GGTTCCCACCAAGCCCATGG+TGG 0.716413 6:+19369559 MsG0680031377.01.T01:CDS
TATCACTCAGTCTCTCTCTG+CGG 0.724565 6:+19366854 MsG0680031377.01.T01:five_prime_UTR
GAGCTTCAGTGAGAGCCTCG+TGG 0.728674 6:-19369232 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATCAATTATTATTATTT+GGG + Chr6:19367979-19367998 MsG0680031377.01.T01:intron 10.0%
!! TTTGATCAATTATTATTATT+TGG + Chr6:19367978-19367997 MsG0680031377.01.T01:intron 10.0%
!!! TCTTATTTGATTATTTTTCT+TGG + Chr6:19367907-19367926 MsG0680031377.01.T01:intron 15.0%
!!! TTTCTGTCATTTTTATAATT+TGG + Chr6:19370043-19370062 MsG0680031377.01.T01:three_prime_UTR 15.0%
!! ATTATAAAAATGACAGAAAC+AGG - Chr6:19370042-19370061 None:intergenic 20.0%
!! CAAAAACTTGAAAATAAAAC+TGG - Chr6:19369805-19369824 None:intergenic 20.0%
!! TAATGAGCAAGAAATTAATT+AGG - Chr6:19368066-19368085 None:intergenic 20.0%
!! TCAGTTTAACAATACATTAA+TGG - Chr6:19367605-19367624 None:intergenic 20.0%
!! TCATGAAGTTGTTTATTAAT+TGG + Chr6:19367160-19367179 MsG0680031377.01.T01:intron 20.0%
!!! TGATTTTTAACTTGTTGATT+TGG + Chr6:19367381-19367400 MsG0680031377.01.T01:intron 20.0%
!!! TGCTTTTTTATGATTTTGTT+CGG + Chr6:19366996-19367015 MsG0680031377.01.T01:intron 20.0%
!!! TTTATGATGATGTTAGAAAT+TGG + Chr6:19367249-19367268 MsG0680031377.01.T01:intron 20.0%
!!! TTTCAATATTTTGTTTCAGA+TGG + Chr6:19368827-19368846 MsG0680031377.01.T01:intron 20.0%
!!! TTTGTTGACTATATCTTAAT+TGG + Chr6:19367273-19367292 MsG0680031377.01.T01:intron 20.0%
! CAAAATATTGAAACCAAAGT+CGG - Chr6:19368820-19368839 None:intergenic 25.0%
! CAAATATAAATGATCATGAC+AGG + Chr6:19370138-19370157 MsG0680031377.01.T01:three_prime_UTR 25.0%
! CTGATTTATTAGATCTTACA+TGG - Chr6:19367580-19367599 None:intergenic 25.0%
! CTGTTTGATTAGATCTTAAT+TGG + Chr6:19367409-19367428 MsG0680031377.01.T01:intron 25.0%
! CTGTTTGATTGTATCTTAAT+TGG + Chr6:19367322-19367341 MsG0680031377.01.T01:intron 25.0%
! GTGTTTGATTGTATCTTAAT+TGG + Chr6:19367352-19367371 MsG0680031377.01.T01:intron 25.0%
! TGTTAAATATGTTTCGTTGT+AGG + Chr6:19368630-19368649 MsG0680031377.01.T01:intron 25.0%
!! GGTTTGATAATTTATGTCTA+TGG + Chr6:19370064-19370083 MsG0680031377.01.T01:three_prime_UTR 25.0%
!! TTATTTTCTGATTCTGACTT+TGG + Chr6:19368715-19368734 MsG0680031377.01.T01:intron 25.0%
!! TTCAGAACTTCATTTTCTAA+AGG + Chr6:19369935-19369954 MsG0680031377.01.T01:three_prime_UTR 25.0%
!!! ACTTTTCTGTTTGATTTTGA+TGG + Chr6:19369882-19369901 MsG0680031377.01.T01:three_prime_UTR 25.0%
!!! ATCTGGTTTGATTATTTTCT+TGG + Chr6:19367930-19367949 MsG0680031377.01.T01:intron 25.0%
!!! TACTTTTTGATTAACTGTTC+TGG + Chr6:19368016-19368035 MsG0680031377.01.T01:intron 25.0%
!!! TTGATTATTTTTCTTGGATC+TGG + Chr6:19367913-19367932 MsG0680031377.01.T01:intron 25.0%
AAATATGTTTCGTTGTAGGT+TGG + Chr6:19368634-19368653 MsG0680031377.01.T01:intron 30.0%
AATATGTTTCGTTGTAGGTT+GGG + Chr6:19368635-19368654 MsG0680031377.01.T01:intron 30.0%
ATCATCAAGATACTGTTTGA+AGG - Chr6:19367139-19367158 None:intergenic 30.0%
ATCTTGTAAACATCTTGCAA+TGG - Chr6:19369095-19369114 None:intergenic 30.0%
ATGGTTCAACAATACAGTAA+TGG - Chr6:19367519-19367538 None:intergenic 30.0%
GTTCGATTCTTTGGTTAAAA+GGG + Chr6:19367067-19367086 MsG0680031377.01.T01:intron 30.0%
TGTTCGATTCTTTGGTTAAA+AGG + Chr6:19367066-19367085 MsG0680031377.01.T01:intron 30.0%
TTCATCAAGAACATGATTAC+TGG + Chr6:19368413-19368432 MsG0680031377.01.T01:CDS 30.0%
TTGCAAGATGTTTACAAGAT+TGG + Chr6:19369095-19369114 MsG0680031377.01.T01:CDS 30.0%
! TTTCTAAAGGCAGCTATATA+AGG + Chr6:19369948-19369967 MsG0680031377.01.T01:three_prime_UTR 30.0%
!! CTGATTTGTTGTTTGCTTAA+TGG + Chr6:19367955-19367974 MsG0680031377.01.T01:intron 30.0%
!! TTTGTTGTTGTTCGATTCTT+TGG + Chr6:19367058-19367077 MsG0680031377.01.T01:intron 30.0%
!! TTTTGATGGCACTGTTATTT+TGG + Chr6:19369896-19369915 MsG0680031377.01.T01:three_prime_UTR 30.0%
!!! ACTGATTTTGAGATTGATGT+TGG + Chr6:19367827-19367846 MsG0680031377.01.T01:intron 30.0%
!!! ATTGCAGTTTTAAGACAACA+TGG + Chr6:19368103-19368122 MsG0680031377.01.T01:intron 30.0%
!!! TTGCAGTTTTAAGACAACAT+GGG + Chr6:19368104-19368123 MsG0680031377.01.T01:intron 30.0%
AGTTTCATCCTACTTGAAGA+AGG + Chr6:19368902-19368921 MsG0680031377.01.T01:CDS 35.0%
CAAGATGTTTACAAGATTGG+TGG + Chr6:19369098-19369117 MsG0680031377.01.T01:CDS 35.0%
CATATCAACATTGTCGTCAT+TGG + Chr6:19368140-19368159 MsG0680031377.01.T01:CDS 35.0%
GATGATCTGTTGTTGTAACA+AGG + Chr6:19368562-19368581 MsG0680031377.01.T01:CDS 35.0%
GATGTTGTTAACCACATCAA+TGG - Chr6:19367538-19367557 None:intergenic 35.0%
GTAGATCGAAACAAAGAGAA+AGG - Chr6:19366942-19366961 None:intergenic 35.0%
GTATTGTTGAACCATTGATG+TGG + Chr6:19367524-19367543 MsG0680031377.01.T01:intron 35.0%
TCTGGAAAATCAACAACAAC+TGG + Chr6:19368173-19368192 MsG0680031377.01.T01:CDS 35.0%
TGATGCTGGTATCATTAAGA+TGG + Chr6:19369538-19369557 MsG0680031377.01.T01:CDS 35.0%
TGTTAAGAATGTTGCTGTGA+AGG + Chr6:19369280-19369299 MsG0680031377.01.T01:CDS 35.0%
TTACCATTGATATTGCCTTG+TGG + Chr6:19368333-19368352 MsG0680031377.01.T01:CDS 35.0%
TTCTGATTCTGACTTTGGTA+TGG + Chr6:19368720-19368739 MsG0680031377.01.T01:intron 35.0%
TTTCCACAAGGCAATATCAA+TGG - Chr6:19368339-19368358 None:intergenic 35.0%
TTTCTGAGCTTGATGTTGTT+AGG + Chr6:19367784-19367803 MsG0680031377.01.T01:intron 35.0%
! AGCAATTTGGCTTATCAAGT+TGG + Chr6:19370103-19370122 MsG0680031377.01.T01:three_prime_UTR 35.0%
! GTTGTTAACTTTTGAGCTTG+AGG + Chr6:19367729-19367748 MsG0680031377.01.T01:intron 35.0%
! GTTTACAAGATTGGTGGTAT+TGG + Chr6:19369104-19369123 MsG0680031377.01.T01:CDS 35.0%
!! AGCTGATTTTGAACTTGATG+TGG + Chr6:19367435-19367454 MsG0680031377.01.T01:intron 35.0%
!! GGTTAAGCTGATTTTGAACT+TGG + Chr6:19367294-19367313 MsG0680031377.01.T01:intron 35.0%
!!! TTTTGAAGCTGGTATCTCTA+AGG + Chr6:19368487-19368506 MsG0680031377.01.T01:CDS 35.0%
AAACTTCACAGCAATGTGAG+AGG - Chr6:19369444-19369463 None:intergenic 40.0%
AACTTCAGTTGTCAAACCAG+TGG - Chr6:19369195-19369214 None:intergenic 40.0%
AAGGTGACAACATGATTGAG+AGG + Chr6:19368973-19368992 MsG0680031377.01.T01:CDS 40.0%
AAGTGGAGGATATTCAGCAA+AGG - Chr6:19369591-19369610 None:intergenic 40.0%
AATGACTGTGCAGTAGTACT+TGG - Chr6:19368372-19368391 None:intergenic 40.0%
ACTTCAGTTGTCAAACCAGT+GGG - Chr6:19369194-19369213 None:intergenic 40.0%
AGAGAGAGACTGAGTGATAA+AGG - Chr6:19366853-19366872 None:intergenic 40.0%
ATACCTCAGCTGAAACGAAA+TGG - Chr6:19366907-19366926 None:intergenic 40.0%
ATCACCGTTCTTCAAGAACT+TGG - Chr6:19369522-19369541 None:intergenic 40.0%
ATCTGGTAAGGAGATTGAGA+AGG + Chr6:19369493-19369512 MsG0680031377.01.T01:CDS 40.0%
ATGGAAGGTTGTTACTCGTT+CGG - Chr6:19366888-19366907 None:intergenic 40.0%
ATGGGTTCTTGACAAGCTTA+AGG + Chr6:19368292-19368311 MsG0680031377.01.T01:CDS 40.0%
CATGTTGTCACCTTCAAATC+CGG - Chr6:19368967-19368986 None:intergenic 40.0%
GAAGAAGTGATGTCAGAACA+TGG + Chr6:19369718-19369737 MsG0680031377.01.T01:exon 40.0%
GCAGCTAAACTTACAGAACT+GGG + Chr6:19369835-19369854 MsG0680031377.01.T01:three_prime_UTR 40.0%
GTAACCAACCTTCTTCAAGT+AGG - Chr6:19368913-19368932 None:intergenic 40.0%
GTTCTGACATCACTTCTTCT+TGG - Chr6:19369717-19369736 None:intergenic 40.0%
TACAGAACTGGGTTCTTGAT+CGG + Chr6:19369846-19369865 MsG0680031377.01.T01:three_prime_UTR 40.0%
TCACCGTTCTTCAAGAACTT+GGG - Chr6:19369521-19369540 None:intergenic 40.0%
TCATCCTACTTGAAGAAGGT+TGG + Chr6:19368906-19368925 MsG0680031377.01.T01:CDS 40.0%
TCCAAAAGTCACAACCATAC+CGG - Chr6:19369171-19369190 None:intergenic 40.0%
TGAGTTGTAGATTCCGACTT+TGG + Chr6:19368804-19368823 MsG0680031377.01.T01:intron 40.0%
TGCAGCTAAACTTACAGAAC+TGG + Chr6:19369834-19369853 MsG0680031377.01.T01:three_prime_UTR 40.0%
TTGATGAAATCACGATGTCC+AGG - Chr6:19368401-19368420 None:intergenic 40.0%
TTTGCTGAATATCCTCCACT+TGG + Chr6:19369590-19369609 MsG0680031377.01.T01:CDS 40.0%
! GAACGAAGGGAATTTTGTCT+GGG - Chr6:19368938-19368957 None:intergenic 40.0%
! GTGGTTCATGATGATGACTT+GGG - Chr6:19369375-19369394 None:intergenic 40.0%
! TAGCTTCATTTTGCTGCTGA+TGG + Chr6:19369975-19369994 MsG0680031377.01.T01:three_prime_UTR 40.0%
!! AACTTGTTACCAAGATCGAC+AGG + Chr6:19369468-19369487 MsG0680031377.01.T01:CDS 40.0%
!! AGCTTTTGCTGTGAGCAATT+TGG + Chr6:19370090-19370109 MsG0680031377.01.T01:three_prime_UTR 40.0%
AAGAACAGCACAATCAGCCT+GGG - Chr6:19368444-19368463 None:intergenic 45.0%
ACCAACCTTGACTGGTACAA+GGG + Chr6:19368999-19369018 MsG0680031377.01.T01:CDS 45.0%
AGCGTTCATTCAAGTACGCA+TGG + Chr6:19368273-19368292 MsG0680031377.01.T01:CDS 45.0%
ATCCGTTTCCAATCTGACCA+GGG - Chr6:19369397-19369416 None:intergenic 45.0%
ATCTTGCAATGGAAGCCTGA+GGG - Chr6:19369084-19369103 None:intergenic 45.0%
ATGCGTCAAACTGTTGCTGT+TGG + Chr6:19369632-19369651 MsG0680031377.01.T01:CDS 45.0%
CACTTGATCTACAAGCTAGG+AGG + Chr6:19368197-19368216 MsG0680031377.01.T01:CDS 45.0%
CAGGTACGATGAAATCGTGA+AGG + Chr6:19368878-19368897 MsG0680031377.01.T01:CDS 45.0%
CCAAAAGTCACAACCATACC+GGG - Chr6:19369170-19369189 None:intergenic 45.0%
CTCAGCTGAAACGAAATGGA+AGG - Chr6:19366903-19366922 None:intergenic 45.0%
CTGCTTCACTCCAAGAGTAA+AGG - Chr6:19368543-19368562 None:intergenic 45.0%
CTTCACGATTTCATCGTACC+TGG - Chr6:19368880-19368899 None:intergenic 45.0%
CTTCCATTTCGTTTCAGCTG+AGG + Chr6:19366901-19366920 MsG0680031377.01.T01:five_prime_UTR 45.0%
GAGCCCAAGTTCTTGAAGAA+CGG + Chr6:19369515-19369534 MsG0680031377.01.T01:CDS 45.0%
GCGTTCATTCAAGTACGCAT+GGG + Chr6:19368274-19368293 MsG0680031377.01.T01:CDS 45.0%
GCTCTTCTTGCCTTTACTCT+TGG + Chr6:19368530-19368549 MsG0680031377.01.T01:CDS 45.0%
GGTCACTTGATCTACAAGCT+AGG + Chr6:19368194-19368213 MsG0680031377.01.T01:CDS 45.0%
GGTGGTCTCAAATTTCCACA+AGG - Chr6:19368351-19368370 None:intergenic 45.0%
TAAGAACAGCACAATCAGCC+TGG - Chr6:19368445-19368464 None:intergenic 45.0%
TATCACTCAGTCTCTCTCTG+CGG + Chr6:19366854-19366873 MsG0680031377.01.T01:five_prime_UTR 45.0%
TATCCGTTTCCAATCTGACC+AGG - Chr6:19369398-19369417 None:intergenic 45.0%
TCAAGAGCCTCAAGAAGAGT+TGG - Chr6:19369026-19369045 None:intergenic 45.0%
TCACCTTCAAATCCGGAGAT+GGG - Chr6:19368960-19368979 None:intergenic 45.0%
TGTGATCGAGAGATTCGAGA+AGG + Chr6:19368232-19368251 MsG0680031377.01.T01:CDS 45.0%
TTCTTGAAGAACGGTGATGC+TGG + Chr6:19369524-19369543 MsG0680031377.01.T01:CDS 45.0%
TTGAATCCGACATTGTCTCC+TGG - Chr6:19369260-19369279 None:intergenic 45.0%
TTTCGTTGCATCCAACTCCA+AGG + Chr6:19369316-19369335 MsG0680031377.01.T01:CDS 45.0%
! GAAGCTGGTATCTCTAAGGA+TGG + Chr6:19368491-19368510 MsG0680031377.01.T01:CDS 45.0%
! GATGACTTGGGAAGTGAAGT+TGG - Chr6:19369363-19369382 None:intergenic 45.0%
! GGAACGAAGGGAATTTTGTC+TGG - Chr6:19368939-19368958 None:intergenic 45.0%
! GGTGGTTCATGATGATGACT+TGG - Chr6:19369376-19369395 None:intergenic 45.0%
!! ACTTGGACGTTTTGCTGTCA+GGG + Chr6:19369607-19369626 MsG0680031377.01.T01:CDS 45.0%
!! CTTATCATTGACTCCACCAC+TGG + Chr6:19368461-19368480 MsG0680031377.01.T01:CDS 45.0%
!! TGTTGCTGTTGGTGTCATCA+AGG + Chr6:19369643-19369662 MsG0680031377.01.T01:CDS 45.0%
AAATCCGGAGATGGGAACGA+AGG - Chr6:19368952-19368971 None:intergenic 50.0%
AAGTTGGCAGCTTCCTTAGC+AGG - Chr6:19369347-19369366 None:intergenic 50.0%
AATCCGGAGATGGGAACGAA+GGG - Chr6:19368951-19368970 None:intergenic 50.0%
ACAGCAAAACGTCCAAGTGG+AGG - Chr6:19369605-19369624 None:intergenic 50.0%
ACCAGCTTCAAAACCACCAG+TGG - Chr6:19368480-19368499 None:intergenic 50.0%
AGCAAAGGTCTCAACCACCA+TGG - Chr6:19369576-19369595 None:intergenic 50.0%
AGCTTCAAAACCACCAGTGG+TGG - Chr6:19368477-19368496 None:intergenic 50.0%
AGTTGGCAGCTTCCTTAGCA+GGG - Chr6:19369346-19369365 None:intergenic 50.0%
ATGAACCACCCTGGTCAGAT+TGG + Chr6:19369386-19369405 MsG0680031377.01.T01:CDS 50.0%
ATTCCCTTCGTTCCCATCTC+CGG + Chr6:19368945-19368964 MsG0680031377.01.T01:CDS 50.0%
CAAGGGACCAACTCTTCTTG+AGG + Chr6:19369016-19369035 MsG0680031377.01.T01:CDS 50.0%
CACCAACCTTGACTGGTACA+AGG + Chr6:19368998-19369017 MsG0680031377.01.T01:CDS 50.0%
CACCCTGGTCAGATTGGAAA+CGG + Chr6:19369392-19369411 MsG0680031377.01.T01:CDS 50.0%
CATACCGGGCTTCACAATAC+CGG - Chr6:19369156-19369175 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG + Chr6:19369658-19369677 MsG0680031377.01.T01:CDS 50.0%
CATCTTGCAATGGAAGCCTG+AGG - Chr6:19369085-19369104 None:intergenic 50.0%
CATGATTACTGGAACCTCCC+AGG + Chr6:19368424-19368443 MsG0680031377.01.T01:CDS 50.0%
CTGACAGCAAAACGTCCAAG+TGG - Chr6:19369608-19369627 None:intergenic 50.0%
CTTAAGGCTGAGCGTGAAAG+AGG + Chr6:19368308-19368327 MsG0680031377.01.T01:CDS 50.0%
CTTGTACCAGTCAAGGTTGG+TGG - Chr6:19369000-19369019 None:intergenic 50.0%
GACTGTGCAGTAGTACTTGG+TGG - Chr6:19368369-19368388 None:intergenic 50.0%
GCAAAGGTCTCAACCACCAT+GGG - Chr6:19369575-19369594 None:intergenic 50.0%
GCTCTTCCAGGAGACAATGT+CGG + Chr6:19369251-19369270 MsG0680031377.01.T01:CDS 50.0%
GTCACCTTCAAATCCGGAGA+TGG - Chr6:19368961-19368980 None:intergenic 50.0%
GTCATCATCATGAACCACCC+TGG + Chr6:19369377-19369396 MsG0680031377.01.T01:CDS 50.0%
GTGGAGAAGAAGGATCCTAC+CGG + Chr6:19369668-19369687 MsG0680031377.01.T01:CDS 50.0%
GTTCCCATCTCCGGATTTGA+AGG + Chr6:19368954-19368973 MsG0680031377.01.T01:CDS 50.0%
TCACAGCAATGTGAGAGGTG+TGG - Chr6:19369439-19369458 None:intergenic 50.0%
TCCCTTGTACCAGTCAAGGT+TGG - Chr6:19369003-19369022 None:intergenic 50.0%
TCTTGCAATGGAAGCCTGAG+GGG - Chr6:19369083-19369102 None:intergenic 50.0%
TGCACAGTCATTGATGCTCC+TGG + Chr6:19368380-19368399 MsG0680031377.01.T01:CDS 50.0%
TTCCTTAGCAGGGTCATCCT+TGG - Chr6:19369336-19369355 None:intergenic 50.0%
TTGGTCCCTTGTACCAGTCA+AGG - Chr6:19369007-19369026 None:intergenic 50.0%
! ACCTGGCCTTCGAGTACTTA+GGG - Chr6:19368863-19368882 None:intergenic 50.0%
! CCCGGTATGGTTGTGACTTT+TGG + Chr6:19369167-19369186 MsG0680031377.01.T01:CDS 50.0%
! GGTATTGGAACTGTGCCAGT+CGG + Chr6:19369119-19369138 MsG0680031377.01.T01:CDS 50.0%
! GTCTCTTTGGCTCGTTGATC+TGG - Chr6:19369049-19369068 None:intergenic 50.0%
! GTTGTGACTTTTGGACCCAC+TGG + Chr6:19369176-19369195 MsG0680031377.01.T01:CDS 50.0%
! TACCTGGCCTTCGAGTACTT+AGG - Chr6:19368864-19368883 None:intergenic 50.0%
!! ATCATTGACTCCACCACTGG+TGG + Chr6:19368464-19368483 MsG0680031377.01.T01:CDS 50.0%
!! CACTTGGACGTTTTGCTGTC+AGG + Chr6:19369606-19369625 MsG0680031377.01.T01:CDS 50.0%
!! GTCATTGGACATGTCGACTC+TGG + Chr6:19368155-19368174 MsG0680031377.01.T01:CDS 50.0%
!! TGTTGGTGTCATCAAGGCTG+TGG + Chr6:19369649-19369668 MsG0680031377.01.T01:CDS 50.0%
!!! ACCACTGGTGGTTTTGAAGC+TGG + Chr6:19368476-19368495 MsG0680031377.01.T01:CDS 50.0%
AACAGCACAATCAGCCTGGG+AGG - Chr6:19368441-19368460 None:intergenic 55.0%
ACCAAGATCGACAGGCGATC+TGG + Chr6:19369476-19369495 MsG0680031377.01.T01:CDS 55.0%
ACCAGATCGCCTGTCGATCT+TGG - Chr6:19369480-19369499 None:intergenic 55.0%
ACTGGGTTCTTGATCGGCGA+TGG + Chr6:19369852-19369871 MsG0680031377.01.T01:three_prime_UTR 55.0%
AGAGGTCCACCAACCTTGAC+TGG + Chr6:19368991-19369010 MsG0680031377.01.T01:CDS 55.0%
AGCAGGGTCATCCTTGGAGT+TGG - Chr6:19369330-19369349 None:intergenic 55.0%
CACCACCCCTAAGTACTCGA+AGG + Chr6:19368854-19368873 MsG0680031377.01.T01:CDS 55.0%
CGGTATTGTGAAGCCCGGTA+TGG + Chr6:19369154-19369173 MsG0680031377.01.T01:CDS 55.0%
CGTTTCCAATCTGACCAGGG+TGG - Chr6:19369394-19369413 None:intergenic 55.0%
CTCCAAGGATGACCCTGCTA+AGG + Chr6:19369331-19369350 MsG0680031377.01.T01:CDS 55.0%
CTTCGAGTACTTAGGGGTGG+TGG - Chr6:19368856-19368875 None:intergenic 55.0%
CTTCTTCTTGGCAGCAGCCT+TGG - Chr6:19369705-19369724 None:intergenic 55.0%
GAGACCGGTATTGTGAAGCC+CGG + Chr6:19369149-19369168 MsG0680031377.01.T01:CDS 55.0%
GATCGACAGGCGATCTGGTA+AGG + Chr6:19369481-19369500 MsG0680031377.01.T01:CDS 55.0%
GCTCTCACTGAAGCTCTTCC+AGG + Chr6:19369239-19369258 MsG0680031377.01.T01:CDS 55.0%
GCTGTGAAGGATCTCAAGCG+TGG + Chr6:19369293-19369312 MsG0680031377.01.T01:CDS 55.0%
GGCTTGTCTGTGGGTCTCTT+TGG - Chr6:19369062-19369081 None:intergenic 55.0%
GTCTGTTGAGATGCACCACG+AGG + Chr6:19369217-19369236 MsG0680031377.01.T01:CDS 55.0%
! AGGCAAGAAGAGCGTGCTCA+CGG - Chr6:19368523-19368542 None:intergenic 55.0%
! CCTGGCCTTCGAGTACTTAG+GGG - Chr6:19368862-19368881 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG - Chr6:19369566-19369585 None:intergenic 55.0%
AAGCCTGAGGGGCTTGTCTG+TGG - Chr6:19369072-19369091 None:intergenic 60.0%
AGCCTGAGGGGCTTGTCTGT+GGG - Chr6:19369071-19369090 None:intergenic 60.0%
CCAGTCGGACGTGTTGAGAC+CGG + Chr6:19369134-19369153 MsG0680031377.01.T01:CDS 60.0%
CCCCTAAGTACTCGAAGGCC+AGG + Chr6:19368859-19368878 MsG0680031377.01.T01:CDS 60.0%
CTCAACCACCATGGGCTTGG+TGG - Chr6:19369567-19369586 None:intergenic 60.0%
GAAGGATCCTACCGGAGCCA+AGG + Chr6:19369676-19369695 MsG0680031377.01.T01:CDS 60.0%
GAGCTTCAGTGAGAGCCTCG+TGG - Chr6:19369235-19369254 None:intergenic 60.0%
GAGGTGTGGCAATCGAGCAC+TGG - Chr6:19369425-19369444 None:intergenic 60.0%
GATGGTTCCCACCAAGCCCA+TGG + Chr6:19369556-19369575 MsG0680031377.01.T01:CDS 60.0%
GGCCTTCGAGTACTTAGGGG+TGG - Chr6:19368859-19368878 None:intergenic 60.0%
GGTCTCAACCACCATGGGCT+TGG - Chr6:19369570-19369589 None:intergenic 60.0%
TACCGGAGCCAAGGTCACCA+AGG + Chr6:19369685-19369704 MsG0680031377.01.T01:CDS 60.0%
TCAGTCTCTCTCTGCGGCTG+AGG + Chr6:19366860-19366879 MsG0680031377.01.T01:five_prime_UTR 60.0%
! AGCCTTGGTGACCTTGGCTC+CGG - Chr6:19369690-19369709 None:intergenic 60.0%
! GGCAAGAAGAGCGTGCTCAC+GGG - Chr6:19368522-19368541 None:intergenic 60.0%
! TTGGTGACCTTGGCTCCGGT+AGG - Chr6:19369686-19369705 None:intergenic 60.0%
CCGGTCTCAACACGTCCGAC+TGG - Chr6:19369137-19369156 None:intergenic 65.0%
GACCCACAGACAAGCCCCTC+AGG + Chr6:19369066-19369085 MsG0680031377.01.T01:CDS 65.0%
GGTTCCCACCAAGCCCATGG+TGG + Chr6:19369559-19369578 MsG0680031377.01.T01:CDS 65.0%
! GGCAGCAGCCTTGGTGACCT+TGG - Chr6:19369696-19369715 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 19366831 19370185 19366831 ID=MsG0680031377.01;Name=MsG0680031377.01
Chr6 mRNA 19366831 19370185 19366831 ID=MsG0680031377.01.T01;Parent=MsG0680031377.01;Name=MsG0680031377.01.T01;_AED=0.42;_eAED=0.42;_QI=104|1|1|1|0.5|0.33|3|458|447
Chr6 exon 19366831 19366922 19366831 ID=MsG0680031377.01.T01:exon:12722;Parent=MsG0680031377.01.T01
Chr6 exon 19368110 19368583 19368110 ID=MsG0680031377.01.T01:exon:12723;Parent=MsG0680031377.01.T01
Chr6 exon 19368846 19370185 19368846 ID=MsG0680031377.01.T01:exon:12724;Parent=MsG0680031377.01.T01
Chr6 five_prime_UTR 19366831 19366922 19366831 ID=MsG0680031377.01.T01:five_prime_utr;Parent=MsG0680031377.01.T01
Chr6 five_prime_UTR 19368110 19368121 19368110 ID=MsG0680031377.01.T01:five_prime_utr;Parent=MsG0680031377.01.T01
Chr6 CDS 19368122 19368583 19368122 ID=MsG0680031377.01.T01:cds;Parent=MsG0680031377.01.T01
Chr6 CDS 19368846 19369727 19368846 ID=MsG0680031377.01.T01:cds;Parent=MsG0680031377.01.T01
Chr6 three_prime_UTR 19369728 19370185 19369728 ID=MsG0680031377.01.T01:three_prime_utr;Parent=MsG0680031377.01.T01
Gene Sequence

>MsG0680031377.01.T01

ATGGGAAAAGAAAAGATTCATATCAACATTGTCGTCATTGGACATGTCGACTCTGGAAAATCAACAACAACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAAATGAACAAGCGTTCATTCAAGTACGCATGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATTACCATTGATATTGCCTTGTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCTGGACATCGTGATTTCATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTTCTTATCATTGACTCCACCACTGGTGGTTTTGAAGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCACGCTCTTCTTGCCTTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGATGGATGCCACCACCCCTAAGTACTCGAAGGCCAGGTACGATGAAATCGTGAAGGAAGTTTCATCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCCTTCGTTCCCATCTCCGGATTTGAAGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTTCTTGAGGCTCTTGACCAGATCAACGAGCCAAAGAGACCCACAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTCGGACGTGTTGAGACCGGTATTGTGAAGCCCGGTATGGTTGTGACTTTTGGACCCACTGGTTTGACAACTGAAGTTAAGTCTGTTGAGATGCACCACGAGGCTCTCACTGAAGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCTGTGAAGGATCTCAAGCGTGGTTTCGTTGCATCCAACTCCAAGGATGACCCTGCTAAGGAAGCTGCCAACTTCACTTCCCAAGTCATCATCATGAACCACCCTGGTCAGATTGGAAACGGATATGCACCAGTGCTCGATTGCCACACCTCTCACATTGCTGTGAAGTTTGCTGAACTTGTTACCAAGATCGACAGGCGATCTGGTAAGGAGATTGAGAAGGAGCCCAAGTTCTTGAAGAACGGTGATGCTGGTATCATTAAGATGGTTCCCACCAAGCCCATGGTGGTTGAGACCTTTGCTGAATATCCTCCACTTGGACGTTTTGCTGTCAGGGACATGCGTCAAACTGTTGCTGTTGGTGTCATCAAGGCTGTGGAGAAGAAGGATCCTACCGGAGCCAAGGTCACCAAGGCTGCTGCCAAGAAGAAGTGA

Protein sequence

>MsG0680031377.01.T01

MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIVKPGMVVTFGPTGLTTEVKSVEMHHEALTEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKEIEKEPKFLKNGDAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAKKK*