AlfalfaGEDB | MsG0380016201.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016201.01

KEGG: K02880
GO: GO:0003735 GO:0005622 GO:0005787 GO:0005840 GO:0006412 GO:0006465 GO:0008233 GO:0015934 GO:0016021
PFAM: PF00237 PF06645

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016201.01.T01	KAF7813616.1	81.625	283	23	1	1	283	1	254	6.93E-157	447

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016201.01.T01	O48557	76.562	192	16	1	1	192	1	163	1.37E-100	294

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016201.01.T01	A0A834T3M4	81.625	283	23	1	1	283	1	254	3.31e-157	447

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000097.01	MsG0380016201.01	0.899512	1.842280e-77	2.285836e-73
MsG0180000125.01	MsG0380016201.01	-0.807317	5.362360e-50	2.977445e-47
MsG0180003623.01	MsG0380016201.01	0.814872	1.234529e-51	8.380714e-49
MsG0180003991.01	MsG0380016201.01	0.852413	4.692475e-61	9.796890e-58
MsG0180004503.01	MsG0380016201.01	0.874590	5.998806e-68	2.715456e-64
MsG0180005772.01	MsG0380016201.01	0.840447	8.648433e-58	1.232275e-54
MsG0180006054.01	MsG0380016201.01	-0.805595	1.237247e-49	6.572097e-47
MsG0280010253.01	MsG0380016201.01	-0.800330	1.516368e-48	7.041473e-46
MsG0280011309.01	MsG0380016201.01	-0.814504	1.490029e-51	1.001646e-48
MsG0380012356.01	MsG0380016201.01	-0.804528	2.069228e-49	1.069327e-46

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PPI

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Gene1	Gene2	Type
MsG0180004014.01	MsG0380016201.01	PPI
MsG0180004015.01	MsG0380016201.01	PPI
MsG0280009716.01	MsG0380016201.01	PPI
MsG0380016201.01	MsG0380017788.01	PPI
MsG0380016201.01	MsG0280007578.01	PPI
MsG0380016201.01	MsG0380018077.01	PPI
MsG0380016201.01	MsG0280007563.01	PPI
MsG0380016201.01	MsG0280010235.01	PPI
MsG0380016201.01	MsG0180006082.01	PPI
MsG0480019373.01	MsG0380016201.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016201.01.T01	MTR_8g080460	83.505	194	3	1	1	194	1	165	1.17e-112	322
MsG0380016201.01.T01	MTR_3g085490	81.959	194	6	1	1	194	1	165	8.36e-112	320
MsG0380016201.01.T01	MTR_3g085490	82.723	191	4	1	1	191	1	162	1.14e-110	317
MsG0380016201.01.T01	MTR_3g085510	98.925	93	1	0	191	283	1	93	3.73e-63	194
MsG0380016201.01.T01	MTR_8g080380	77.660	94	21	0	190	283	91	184	4.10e-50	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016201.01.T01	AT1G27400	75.258	194	19	1	1	194	1	165	5.98e-101	293
MsG0380016201.01.T01	AT1G67430	74.742	194	20	1	1	194	1	165	1.04e-100	292
MsG0380016201.01.T01	AT1G67430	69.403	134	12	1	1	134	1	105	9.08e-59	184
MsG0380016201.01.T01	AT4G40042	79.747	79	16	0	191	269	1	79	3.03e-41	138
MsG0380016201.01.T01	AT2G22425	71.591	88	25	0	191	278	1	88	2.11e-39	133
MsG0380016201.01.T01	AT2G22425	71.591	88	25	0	191	278	1	88	2.11e-39	133

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Find 102 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATGAAATTTCAACTC+AGG	0.476370	3:-80379526	None:intergenic
AACAGACACTCTAATGGGCA+AGG	0.616551	3:+80373917	MsG0380016201.01.T01:CDS
AACATCTTCTAAGTATCTTT+TGG	0.263817	3:-80373825	None:intergenic
AACCCTAAGGTCAGCACCTC+TGG	0.343663	3:-80372823	None:intergenic
AAGAAACCCATTAAGAAGTA+GGG	0.531311	3:+80379475	MsG0380016201.01.T01:CDS
AAGATACTTAGAAGATGTTT+TGG	0.295183	3:+80373829	MsG0380016201.01.T01:CDS
AAGCATGAAATTTCAACTCA+GGG	0.549473	3:-80379525	None:intergenic
AAGGTCAGCACCTCTGGCCT+TGG	0.384955	3:-80372817	None:intergenic
AATAACGCAATACCTCTTTC+TGG	0.302719	3:-80374386	None:intergenic
AATCAAACCTAAAACGAAAA+TGG	0.290194	3:-80379651	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATAAGCCAAACCAAAA+GGG	-	Chr3:80372989-80373008	None:intergenic	30.0%
AAAGCATGAAATTTCAACTC+AGG	-	Chr3:80379529-80379548	None:intergenic	30.0%
AAATAAAGGGTCTCAACTAT+TGG	-	Chr3:80374561-80374580	None:intergenic	30.0%
AAGAAACCCATTAAGAAGTA+GGG	+	Chr3:80379475-80379494	MsG0380016201.01.T01:CDS	30.0%
AAGAACAAAAACAACTACAG+GGG	-	Chr3:80373711-80373730	None:intergenic	30.0%
AAGAATAGTATATAGCTCCT+TGG	+	Chr3:80378969-80378988	MsG0380016201.01.T01:intron	30.0%
AAGCATGAAATTTCAACTCA+GGG	-	Chr3:80379528-80379547	None:intergenic	30.0%
AAGTCATAAGTTCTCACTAA+CGG	-	Chr3:80373106-80373125	None:intergenic	30.0%
AATATACTCGTGTAAAGATG+AGG	-	Chr3:80378586-80378605	None:intergenic	30.0%
ACAGATCAAAACCACAAATT+AGG	-	Chr3:80372786-80372805	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	80372585	80379661	80372585	ID=MsG0380016201.01;Name=MsG0380016201.01
Chr3	mRNA	80372585	80379661	80372585	ID=MsG0380016201.01.T01;Parent=MsG0380016201.01;Name=MsG0380016201.01.T01;_AED=0.40;_eAED=0.43;_QI=83\|0.5\|0.71\|1\|1\|1\|7\|166\|283
Chr3	exon	80372585	80372707	80372585	ID=MsG0380016201.01.T01:exon:11395;Parent=MsG0380016201.01.T01
Chr3	exon	80372814	80372854	80372814	ID=MsG0380016201.01.T01:exon:11396;Parent=MsG0380016201.01.T01
Chr3	exon	80373592	80373648	80373592	ID=MsG0380016201.01.T01:exon:11397;Parent=MsG0380016201.01.T01
Chr3	exon	80373746	80374006	80373746	ID=MsG0380016201.01.T01:exon:11398;Parent=MsG0380016201.01.T01
Chr3	exon	80374132	80374234	80374132	ID=MsG0380016201.01.T01:exon:11399;Parent=MsG0380016201.01.T01
Chr3	exon	80374328	80374395	80374328	ID=MsG0380016201.01.T01:exon:11400;Parent=MsG0380016201.01.T01
Chr3	exon	80379214	80379661	80379214	ID=MsG0380016201.01.T01:exon:11401;Parent=MsG0380016201.01.T01
Chr3	five_prime_UTR	80372585	80372667	80372585	ID=MsG0380016201.01.T01:five_prime_utr;Parent=MsG0380016201.01.T01
Chr3	CDS	80372668	80372707	80372668	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	CDS	80372814	80372854	80372814	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	CDS	80373592	80373648	80373592	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	CDS	80373746	80374006	80373746	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	CDS	80374132	80374234	80374132	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	CDS	80374328	80374395	80374328	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	CDS	80379214	80379495	80379214	ID=MsG0380016201.01.T01:cds;Parent=MsG0380016201.01.T01
Chr3	three_prime_UTR	80379496	80379661	80379496	ID=MsG0380016201.01.T01:three_prime_utr;Parent=MsG0380016201.01.T01

Gene Sequence

>MsG0380016201.01.T01

ATGGTGAAGTACTCCAAAGAGCCCGACAATCCCACCAAATCAACCAAGGCCAGAGGTGCTGACCTTAGGGTTCATTTCAAGTTGATTTGCCATGATGGTGTTGACTTGGGGCCTTGGAGAGTGCTCCAAAGGTCTCAGACTTACGATTGTCTCTATTTTACTGTGCAGAACACCAGGGAAACAGCGTTTGCCATCAGGAAGTTGCCCCTGACCAAAGCCAAAAGATACTTAGAAGATGTTTTGGCCCACAAACAGGCCATTCCTTTCAGACGTTTCTGTCGTGGTGTTGGGAGGACTGCCCAAGCTAAGAACAGACACTCTAATGGGCAAGGACGCTGGCCTGTCAAGTCAGCTAAATTCATTCTTGACTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTCTACGTGTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGAAGACGTACCTACAGGGCTCATGGAAGAATCAATCCCTACATGTCATCTCCTTGCCACATCGAACTGATACTATCTGAGAAGGAAGAGGCTGTCCAGAAAGAGATGGATTGGCAAGGGCAAAACCTAGCAGAGAAGCTAATGCAGATAATGTTGCTTGCATTTGCTGTGGTTGCATTTGGAACGGGATATCTTACAGCTTCTTTCAAGACGATGATGCTCATATATGCTGGTGGTGTTGTTCTCACCACATTGGTGACTGTCCCAAATTGGCCCTTTTTCAACCGCCATCCTCTCAAGTGGTTGGATCCAAGTGAGGTAGAAAAGCATCCGAAGCCACAGCTATCTCCTATTGTGAATTCAAAGAAGAAACCCATTAAGAAGTAG

Protein sequence

>MsG0380016201.01.T01

MVKYSKEPDNPTKSTKARGADLRVHFKLICHDGVDLGPWRVLQRSQTYDCLYFTVQNTRETAFAIRKLPLTKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEMDWQGQNLAEKLMQIMLLAFAVVAFGTGYLTASFKTMMLIYAGGVVLTTLVTVPNWPFFNRHPLKWLDPSEVEKHPKPQLSPIVNSKKKPIKK*