AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040100.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040100.01.T01 MTR_2g078580 53.448 116 53 1 380 495 122 236 7.82e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040100.01.T01 AT5G13920 23.094 459 243 18 12 454 49 413 1.13e-15 79.7
MsG0780040100.01.T01 AT5G13920 37.755 98 53 3 12 101 49 146 2.51e-13 72.4

Find 105 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTCCTCCCATAGTTATT+TGG 0.187096 7:+73054076 None:intergenic
TTCACTTCCTGGTGATCTAT+TGG 0.189914 7:+73051761 None:intergenic
TCCTTTAGCTGTTCACTTCC+TGG 0.216962 7:+73051750 None:intergenic
TTGTCGACAGAGCGTATTTC+AGG 0.217309 7:-73052593 MsG0780040100.01.T01:CDS
AAAACATCATACCTGTTTAA+TGG 0.218571 7:+73053796 None:intergenic
TCACTTCCTGGTGATCTATT+GGG 0.222828 7:+73051762 None:intergenic
TCATACTCAAACTGAATATC+TGG 0.288502 7:+73052694 None:intergenic
GCTCATACTCCAAATAACTA+TGG 0.290254 7:-73054085 MsG0780040100.01.T01:CDS
TGAAGAGTACTCGTTTGTTT+TGG 0.318646 7:+73051860 None:intergenic
TCTCAATGATCTAGAGGGTT+TGG 0.330384 7:-73051685 MsG0780040100.01.T01:CDS
CCTGAGTGTCAATGTCTTGC+TGG 0.341031 7:-73053866 MsG0780040100.01.T01:CDS
GTTTCAATCATTTGATCCTA+TGG 0.343262 7:-73051888 MsG0780040100.01.T01:CDS
AAACATCATACCTGTTTAAT+GGG 0.343581 7:+73053797 None:intergenic
GAGAGATCTGCTTGCTTTGT+CGG 0.351865 7:+73052929 None:intergenic
ATTTCTGCTGATGCATCATT+TGG 0.366884 7:-73052562 MsG0780040100.01.T01:intron
CATCAATCATGCCAAGTCTA+TGG 0.378809 7:-73051556 MsG0780040100.01.T01:CDS
ATCCTGTGGTTACCGTGTTT+CGG 0.379808 7:-73053016 MsG0780040100.01.T01:CDS
AGCCTTCTCCAGTGCTGTCT+TGG 0.381438 7:+73051173 None:intergenic
CTCCATCTTCTCCAGTTCAC+AGG 0.397942 7:+73051323 None:intergenic
TGAAGAAGTCGCTAATCTTC+AGG 0.402805 7:-73051379 MsG0780040100.01.T01:CDS
TCTTGTCCAATGGGTTGGTT+AGG 0.417836 7:-73052072 MsG0780040100.01.T01:CDS
ATTGCAGGTTCTTGTCCAAT+GGG 0.422632 7:-73052081 MsG0780040100.01.T01:intron
AGAGTTGAAATCCTGTGAAC+TGG 0.422824 7:-73051334 MsG0780040100.01.T01:CDS
GGAGCACATTAAATTCTTAG+AGG 0.431027 7:-73051493 MsG0780040100.01.T01:CDS
ATCTGCTTGCTTTGTCGGTA+AGG 0.434008 7:+73052934 None:intergenic
CTGTCGACAACTGGTCTTTG+AGG 0.436550 7:+73052606 None:intergenic
TATTGCAGGTTCTTGTCCAA+TGG 0.439287 7:-73052082 MsG0780040100.01.T01:intron
GTCAATTTCTGCCATAGACT+TGG 0.447175 7:+73051545 None:intergenic
TAAACAATTTAACACTGAAA+AGG 0.453558 7:+73051620 None:intergenic
CATGGAAAATTCGCCTACTC+TGG 0.455767 7:-73051517 MsG0780040100.01.T01:CDS
CAGGTTCTTGTCCAATGGGT+TGG 0.456800 7:-73052077 MsG0780040100.01.T01:CDS
AGCGGTGATATTTATGCAGC+AGG 0.459863 7:-73051712 MsG0780040100.01.T01:CDS
ATGAGATGATAGAGAAGCTT+CGG 0.460418 7:+73052639 None:intergenic
CACTTCCTGGTGATCTATTG+GGG 0.464562 7:+73051763 None:intergenic
AAATACGCTCTGTCGACAAC+TGG 0.468375 7:+73052597 None:intergenic
CTTTACATGTCCCATCAGAT+TGG 0.471970 7:-73054053 MsG0780040100.01.T01:intron
CTCTCTCAATGAATATATTG+AGG 0.476634 7:-73052911 MsG0780040100.01.T01:CDS
AGAGGTGGAGAAAGTGAGAT+TGG 0.481512 7:-73051475 MsG0780040100.01.T01:CDS
AAGTGAGATTGGCTAACATC+CGG 0.482030 7:-73051464 MsG0780040100.01.T01:CDS
TGTCGACAACTGGTCTTTGA+GGG 0.487261 7:+73052607 None:intergenic
AGTTGCAGCCAAGACAGCAC+TGG 0.488091 7:-73051181 MsG0780040100.01.T01:CDS
TGTGAATTATCTTCCTCTGT+TGG 0.489986 7:+73052730 None:intergenic
TGAATATCTGGAAAACCGTC+AGG 0.499648 7:+73052706 None:intergenic
GATAGACTTAGTTGCAATTG+AGG 0.502431 7:-73052662 MsG0780040100.01.T01:CDS
ATATGGTGTCCTTGCGGTCA+TGG 0.508748 7:-73054126 MsG0780040100.01.T01:CDS
ACCAGGAAGTGAACAGCTAA+AGG 0.511344 7:-73051751 MsG0780040100.01.T01:CDS
TCTCTCAATGAATATATTGA+GGG 0.517423 7:-73052910 MsG0780040100.01.T01:CDS
GACGTTGCAAATCAGTCTCA+TGG 0.521285 7:+73053903 None:intergenic
ATCCTGTGAACTGGAGAAGA+TGG 0.523213 7:-73051325 MsG0780040100.01.T01:CDS
AGTGAGATTGGCTAACATCC+GGG 0.531581 7:-73051463 MsG0780040100.01.T01:CDS
CCTCAGCGAAGTCATTAGTC+AGG 0.536242 7:+73052860 None:intergenic
ACGATGCTTGTGTTATCGAC+TGG 0.536824 7:+73052958 None:intergenic
ATTGATATCAAACAGGGTCA+TGG 0.537624 7:-73053039 MsG0780040100.01.T01:intron
CGTTGCCAGCTGTATCAACT+TGG 0.539514 7:+73052884 None:intergenic
GCACATTAAATTCTTAGAGG+TGG 0.539719 7:-73051490 MsG0780040100.01.T01:CDS
CTCATACTCCAAATAACTAT+GGG 0.546444 7:-73054084 MsG0780040100.01.T01:CDS
CAATCTTCACACAGTCATCC+CGG 0.546682 7:+73051445 None:intergenic
TGTCTCTCATAGACTCGTGC+TGG 0.547080 7:+73051655 None:intergenic
TGTCGACAGAGCGTATTTCA+GGG 0.547872 7:-73052592 MsG0780040100.01.T01:CDS
GGCAGAAATTGACAAGTCCA+TGG 0.550972 7:-73051535 MsG0780040100.01.T01:CDS
CTAGTAACATACCAATCTGA+TGG 0.551204 7:+73054042 None:intergenic
GGAGACCAAGTTGATACAGC+TGG 0.551737 7:-73052889 MsG0780040100.01.T01:CDS
TCAGATACAGCCACAGGTGA+AGG 0.551842 7:+73052781 None:intergenic
GGAGAAGGCTAAACGTGCGT+TGG 0.565325 7:-73051160 MsG0780040100.01.T01:CDS
AGCCAAGACAGCACTGGAGA+AGG 0.568562 7:-73051175 MsG0780040100.01.T01:CDS
CTCGACAAGCAGAAGCGGCA+AGG 0.570546 7:-73051233 MsG0780040100.01.T01:CDS
TTCCGAAACACGGTAACCAC+AGG 0.572644 7:+73053014 None:intergenic
GGGACTTCTCAATGATCTAG+AGG 0.573353 7:-73051691 MsG0780040100.01.T01:CDS
AGGCGACCTAACCAACCCAT+TGG 0.580465 7:+73052066 None:intergenic
GTAAGCCCCAATAGATCACC+AGG 0.584261 7:-73051768 MsG0780040100.01.T01:CDS
ACAATTTAACACTGAAAAGG+CGG 0.584452 7:+73051623 None:intergenic
CGATATGAAAAGAAGGATGT+CGG 0.589160 7:-73051283 MsG0780040100.01.T01:CDS
GGCTTGACGATATGAAAAGA+AGG 0.596025 7:-73051290 MsG0780040100.01.T01:CDS
TTCTGAGAATCCTTCACCTG+TGG 0.597324 7:-73052791 MsG0780040100.01.T01:CDS
GGAAAATTCGCCTACTCTGG+AGG 0.597939 7:-73051514 MsG0780040100.01.T01:CDS
TAAAACTCGACAAGCAGAAG+CGG 0.600390 7:-73051238 MsG0780040100.01.T01:CDS
CCAGCAAGACATTGACACTC+AGG 0.603118 7:+73053866 None:intergenic
AGAAGATGGAGGAAGAGACC+CGG 0.604595 7:-73051311 MsG0780040100.01.T01:CDS
GGAATCTCAGATACAGCCAC+AGG 0.604606 7:+73052775 None:intergenic
TAGTAACATACCAATCTGAT+GGG 0.607557 7:+73054043 None:intergenic
AGACAGACACCATGACCGCA+AGG 0.613283 7:+73054117 None:intergenic
TTAATGTGCTCCTCCAGAGT+AGG 0.616939 7:+73051504 None:intergenic
GAAGTTCATCTTCCGAAACA+CGG 0.621723 7:+73053004 None:intergenic
ATAGTTATTTGGAGTATGAG+CGG 0.622038 7:+73054087 None:intergenic
GTCGACAGAGCGTATTTCAG+GGG 0.622969 7:-73052591 MsG0780040100.01.T01:CDS
ATACTCCAAATAACTATGGG+AGG 0.623595 7:-73054081 MsG0780040100.01.T01:CDS
CTGACTAATGACTTCGCTGA+GGG 0.625887 7:-73052859 MsG0780040100.01.T01:CDS
AACGTGCGTTGGAAAAGTAG+TGG 0.626649 7:-73051149 None:intergenic
GGCTGTATCTGAGATTCCTG+AGG 0.627996 7:-73052770 MsG0780040100.01.T01:CDS
GGACTTCTCAATGATCTAGA+GGG 0.629522 7:-73051690 MsG0780040100.01.T01:CDS
TTGCAAATCAGTCTCATGGA+TGG 0.636503 7:+73053907 None:intergenic
AAACAGGGTCATGGATCCTG+TGG 0.637813 7:-73053030 MsG0780040100.01.T01:intron
GCGGTGATATTTATGCAGCA+GGG 0.640685 7:-73051711 MsG0780040100.01.T01:CDS
CTGTGAACTGGAGAAGATGG+AGG 0.646229 7:-73051322 MsG0780040100.01.T01:CDS
AAGCAGAGGATCACCAACAG+AGG 0.648823 7:-73052743 MsG0780040100.01.T01:CDS
AAAATAGCTTAGGTGTGTAG+GGG 0.650871 7:+73052011 None:intergenic
GAAGATAATTCACAACCTGA+CGG 0.651055 7:-73052721 MsG0780040100.01.T01:CDS
CACTCAGGATAAGTAAACAA+AGG 0.659044 7:+73053881 None:intergenic
GGAACGAAAACAAAGAGAAG+CGG 0.669686 7:-73051730 MsG0780040100.01.T01:CDS
TCGACAGAGCGTATTTCAGG+GGG 0.670022 7:-73052590 MsG0780040100.01.T01:CDS
ATGCAGATATGGTGTCCTTG+CGG 0.677815 7:-73054132 None:intergenic
GCTGTATCTGAGATTCCTGA+GGG 0.692469 7:-73052769 MsG0780040100.01.T01:CDS
CCTGACTAATGACTTCGCTG+AGG 0.704482 7:-73052860 MsG0780040100.01.T01:CDS
AAAAGGATGAGAATAACAGA+CGG 0.712163 7:-73052814 MsG0780040100.01.T01:CDS
TATGAAAAGAAGGATGTCGG+AGG 0.720927 7:-73051280 MsG0780040100.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTATGTTTTTTTG+TGG - Chr7:73051323-73051342 MsG0780040100.01.T01:CDS 10.0%
!! AAAATGAGAAAAATAAAACA+TGG + Chr7:73051300-73051319 None:intergenic 15.0%
!! AATCTTATTGATATCAAACA+GGG - Chr7:73052231-73052250 MsG0780040100.01.T01:intron 20.0%
!! ACATAAACAAAGTAGTTTAA+TGG + Chr7:73051603-73051622 None:intergenic 20.0%
!! TAAACAATTTAACACTGAAA+AGG + Chr7:73053659-73053678 None:intergenic 20.0%
!! TAATCTTATTGATATCAAAC+AGG - Chr7:73052230-73052249 MsG0780040100.01.T01:intron 20.0%
!! TATGAAAAATCGAAACTTTA+AGG + Chr7:73051271-73051290 None:intergenic 20.0%
!!! ATCAAATTAATTTGAACCTA+AGG - Chr7:73053036-73053055 MsG0780040100.01.T01:intron 20.0%
!!! TGAAGAGTAATTTATTTTTG+TGG - Chr7:73052075-73052094 MsG0780040100.01.T01:CDS 20.0%
!!! TTTTTTGTGGTAATTTTAAG+TGG - Chr7:73051336-73051355 MsG0780040100.01.T01:CDS 20.0%
! AAAACATCATACCTGTTTAA+TGG + Chr7:73051483-73051502 None:intergenic 25.0%
! AAACATCATACCTGTTTAAT+GGG + Chr7:73051482-73051501 None:intergenic 25.0%
! AAGTTGAACATTGCAAATAA+AGG + Chr7:73051941-73051960 None:intergenic 25.0%
! ATTCAAAATGACATAACTTG+CGG + Chr7:73052822-73052841 None:intergenic 25.0%
! GAGTTGGATGAAAAAAAATA+AGG + Chr7:73053233-73053252 None:intergenic 25.0%
! GTTTGTAAAAAATTGATGGA+AGG - Chr7:73051434-73051453 MsG0780040100.01.T01:CDS 25.0%
! GTTTGTTTAGTACCAAATAA+GGG - Chr7:73051565-73051584 MsG0780040100.01.T01:CDS 25.0%
! TAATTTGAACCTAAGGAATT+TGG - Chr7:73053043-73053062 MsG0780040100.01.T01:intron 25.0%
! TACTAAGTAAAGCAATTGAT+TGG + Chr7:73052883-73052902 None:intergenic 25.0%
! TCTCTCAATGAATATATTGA+GGG - Chr7:73052366-73052385 MsG0780040100.01.T01:intron 25.0%
! TGGAGTTTGTAAAAAATTGA+TGG - Chr7:73051430-73051449 MsG0780040100.01.T01:CDS 25.0%
! TGTTTGTTTAGTACCAAATA+AGG - Chr7:73051564-73051583 MsG0780040100.01.T01:CDS 25.0%
!! AACAATTTTCTGACTATGTA+TGG - Chr7:73053692-73053711 MsG0780040100.01.T01:intron 25.0%
!! ACAATTTTCTGACTATGTAT+GGG - Chr7:73053693-73053712 MsG0780040100.01.T01:intron 25.0%
!! CTACTTTGTTTATGTATTGT+TGG - Chr7:73051608-73051627 MsG0780040100.01.T01:CDS 25.0%
!! TAATTTTACCAATCGCATTT+TGG + Chr7:73051764-73051783 None:intergenic 25.0%
!! TACCAAATAAGGGTTTATTT+TGG - Chr7:73051575-73051594 MsG0780040100.01.T01:CDS 25.0%
!! TAGTCACAAGTTTTTACAAA+AGG + Chr7:73051839-73051858 None:intergenic 25.0%
!!! TGGTACTATTTTCTTTTTTG+TGG - Chr7:73052734-73052753 MsG0780040100.01.T01:CDS 25.0%
!!! TTGTCGAGTTTTATCTTTTA+AGG + Chr7:73054031-73054050 None:intergenic 25.0%
!!! TTTTATTTGTCCCATTAAAC+AGG - Chr7:73051469-73051488 MsG0780040100.01.T01:CDS 25.0%
AAAAATAGCTTAGGTGTGTA+GGG + Chr7:73053269-73053288 None:intergenic 30.0%
AAAAGGATGAGAATAACAGA+CGG - Chr7:73052462-73052481 MsG0780040100.01.T01:intron 30.0%
AATTCTCTTGATCTTATTGC+AGG - Chr7:73053180-73053199 MsG0780040100.01.T01:intron 30.0%
ACAATTTAACACTGAAAAGG+CGG + Chr7:73053656-73053675 None:intergenic 30.0%
AGAATAATTAAACGTGAGGT+GGG - Chr7:73051965-73051984 MsG0780040100.01.T01:intron 30.0%
ATAACACAACCAAATTCCTT+AGG + Chr7:73053055-73053074 None:intergenic 30.0%
ATCAAGAGAATTTCCACATA+TGG + Chr7:73053172-73053191 None:intergenic 30.0%
ATGTTCAGCTATAATGACTT+TGG + Chr7:73052932-73052951 None:intergenic 30.0%
ATTGTGATCACTGATCAATA+GGG - Chr7:73052026-73052045 MsG0780040100.01.T01:CDS 30.0%
CACACAAACAAATGATATCA+AGG + Chr7:73053310-73053329 None:intergenic 30.0%
CACCAAAATAAACCCTTATT+TGG + Chr7:73051580-73051599 None:intergenic 30.0%
CTCATACTCCAAATAACTAT+GGG - Chr7:73051192-73051211 MsG0780040100.01.T01:CDS 30.0%
CTCTCTCAATGAATATATTG+AGG - Chr7:73052365-73052384 MsG0780040100.01.T01:intron 30.0%
GTCATTATAGCTGAACATAT+AGG - Chr7:73052934-73052953 MsG0780040100.01.T01:CDS 30.0%
GTTGAGAATAATTAAACGTG+AGG - Chr7:73051961-73051980 MsG0780040100.01.T01:intron 30.0%
GTTTCAATCATTTGATCCTA+TGG - Chr7:73053388-73053407 MsG0780040100.01.T01:intron 30.0%
TAACAGCAGAAAAATAGCTT+AGG + Chr7:73053278-73053297 None:intergenic 30.0%
TAGTAACATACCAATCTGAT+GGG + Chr7:73051236-73051255 None:intergenic 30.0%
TATTATGACCAAAATGCGAT+TGG - Chr7:73051753-73051772 MsG0780040100.01.T01:CDS 30.0%
TCATACTCAAACTGAATATC+TGG + Chr7:73052585-73052604 None:intergenic 30.0%
TGAAACATACCTGTAATGAT+GGG + Chr7:73053374-73053393 None:intergenic 30.0%
TGTAAAAAATTGATGGAAGG+AGG - Chr7:73051437-73051456 MsG0780040100.01.T01:CDS 30.0%
TTGAAACATACCTGTAATGA+TGG + Chr7:73053375-73053394 None:intergenic 30.0%
! ATAGTTATTTGGAGTATGAG+CGG + Chr7:73051192-73051211 None:intergenic 30.0%
! ATTTTTGTGGCAATTGTAGT+TGG - Chr7:73052088-73052107 MsG0780040100.01.T01:intron 30.0%
! GAAAAATCGAAACTTTAAGG+TGG + Chr7:73051268-73051287 None:intergenic 30.0%
! GATTTAAAACCTTGGTTAGT+GGG + Chr7:73051668-73051687 None:intergenic 30.0%
! GTGTTACATAGTTGTTATTG+CGG - Chr7:73051709-73051728 MsG0780040100.01.T01:CDS 30.0%
! TTTTTGTGGCAATTGTAGTT+GGG - Chr7:73052089-73052108 MsG0780040100.01.T01:intron 30.0%
!! CTATTTTTCTGCTGTTAGTA+TGG - Chr7:73053281-73053300 MsG0780040100.01.T01:intron 30.0%
!! TTTTGCTATCAACGAACAAA+AGG - Chr7:73052445-73052464 MsG0780040100.01.T01:intron 30.0%
AAAATAGCTTAGGTGTGTAG+GGG + Chr7:73053268-73053287 None:intergenic 35.0%
AACTTCCTCCCATAGTTATT+TGG + Chr7:73051203-73051222 None:intergenic 35.0%
AATAATTAAACGTGAGGTGG+GGG - Chr7:73051967-73051986 MsG0780040100.01.T01:intron 35.0%
ATAACAACTATGTAACACCG+AGG + Chr7:73051707-73051726 None:intergenic 35.0%
ATACTCCAAATAACTATGGG+AGG - Chr7:73051195-73051214 MsG0780040100.01.T01:CDS 35.0%
ATGAGATGATAGAGAAGCTT+CGG + Chr7:73052640-73052659 None:intergenic 35.0%
ATTGATATCAAACAGGGTCA+TGG - Chr7:73052237-73052256 MsG0780040100.01.T01:intron 35.0%
ATTTCTGCTGATGCATCATT+TGG - Chr7:73052714-73052733 MsG0780040100.01.T01:CDS 35.0%
CACTCAGGATAAGTAAACAA+AGG + Chr7:73051398-73051417 None:intergenic 35.0%
CGATATGAAAAGAAGGATGT+CGG - Chr7:73053993-73054012 MsG0780040100.01.T01:intron 35.0%
CTAGTAACATACCAATCTGA+TGG + Chr7:73051237-73051256 None:intergenic 35.0%
GAAAAATAGCTTAGGTGTGT+AGG + Chr7:73053270-73053289 None:intergenic 35.0%
GAAGATAATTCACAACCTGA+CGG - Chr7:73052555-73052574 MsG0780040100.01.T01:intron 35.0%
GAATAATTAAACGTGAGGTG+GGG - Chr7:73051966-73051985 MsG0780040100.01.T01:intron 35.0%
GAGAATAATTAAACGTGAGG+TGG - Chr7:73051964-73051983 MsG0780040100.01.T01:intron 35.0%
GATAGACTTAGTTGCAATTG+AGG - Chr7:73052614-73052633 MsG0780040100.01.T01:CDS 35.0%
GATTGGATGTATAGAGAGAA+GGG + Chr7:73052850-73052869 None:intergenic 35.0%
GATTGTGATCACTGATCAAT+AGG - Chr7:73052025-73052044 MsG0780040100.01.T01:CDS 35.0%
GCACATTAAATTCTTAGAGG+TGG - Chr7:73053786-73053805 MsG0780040100.01.T01:intron 35.0%
GCTCATACTCCAAATAACTA+TGG - Chr7:73051191-73051210 MsG0780040100.01.T01:CDS 35.0%
GGAGCACATTAAATTCTTAG+AGG - Chr7:73053783-73053802 MsG0780040100.01.T01:intron 35.0%
GTAACTCGAAATGACGTTTA+AGG + Chr7:73053015-73053034 None:intergenic 35.0%
TACGCATAATGAATAGATCC+TGG + Chr7:73052206-73052225 None:intergenic 35.0%
TACTACATTTGTGGAAAGCT+GGG + Chr7:73053491-73053510 None:intergenic 35.0%
TGAATAATGCAAAGCCAAAG+AGG + Chr7:73053337-73053356 None:intergenic 35.0%
TGCAAATAAAGGACTAAGCT+TGG + Chr7:73051930-73051949 None:intergenic 35.0%
TGTGAATTATCTTCCTCTGT+TGG + Chr7:73052549-73052568 None:intergenic 35.0%
TTACTACATTTGTGGAAAGC+TGG + Chr7:73053492-73053511 None:intergenic 35.0%
TTTAGTAGAGAAGCCATATG+TGG - Chr7:73053156-73053175 MsG0780040100.01.T01:intron 35.0%
! CGATTTAAAACCTTGGTTAG+TGG + Chr7:73051669-73051688 None:intergenic 35.0%
! TAGAATTTGTTTGGTCTACC+AGG - Chr7:73052185-73052204 MsG0780040100.01.T01:intron 35.0%
! TTCTTTTCATATCGTCAAGC+CGG + Chr7:73053987-73054006 None:intergenic 35.0%
! TTTTTGTCTCCCATCATTAC+AGG - Chr7:73053362-73053381 MsG0780040100.01.T01:intron 35.0%
!! GGGGATTTCAAATTTTGAGT+TGG + Chr7:73053249-73053268 None:intergenic 35.0%
!! GTGAATGGATTTTCTGTTGA+TGG - Chr7:73051989-73052008 MsG0780040100.01.T01:intron 35.0%
!!! CTAACCAAGGTTTTAAATCG+CGG - Chr7:73051669-73051688 MsG0780040100.01.T01:CDS 35.0%
!!! GTTTGTTTTGGAACATCCAT+AGG + Chr7:73053407-73053426 None:intergenic 35.0%
!!! TGAAGAGTACTCGTTTGTTT+TGG + Chr7:73053419-73053438 None:intergenic 35.0%
!!! TTTTTGTTTTCGAATGAGCG+CGG + Chr7:73053923-73053942 None:intergenic 35.0%
AGAGTTGAAATCCTGTGAAC+TGG - Chr7:73053942-73053961 MsG0780040100.01.T01:intron 40.0%
AGCAATTGATTGGAAAGACC+TGG + Chr7:73052873-73052892 None:intergenic 40.0%
ATTGCAGGTTCTTGTCCAAT+GGG - Chr7:73053195-73053214 MsG0780040100.01.T01:intron 40.0%
ATTGGGGCTTACTACATTTG+TGG + Chr7:73053500-73053519 None:intergenic 40.0%
CATCAATCATGCCAAGTCTA+TGG - Chr7:73053720-73053739 MsG0780040100.01.T01:intron 40.0%
CCAAACAAATTCTACAGAGC+AGG + Chr7:73052179-73052198 None:intergenic 40.0%
CTTTACATGTCCCATCAGAT+TGG - Chr7:73051223-73051242 MsG0780040100.01.T01:CDS 40.0%
GAAGTTCATCTTCCGAAACA+CGG + Chr7:73052275-73052294 None:intergenic 40.0%
GACAGTAGTATAAGCACATG+TGG - Chr7:73053120-73053139 MsG0780040100.01.T01:intron 40.0%
GCAATTGATTGGAAAGACCT+GGG + Chr7:73052872-73052891 None:intergenic 40.0%
GGAACGAAAACAAAGAGAAG+CGG - Chr7:73053546-73053565 MsG0780040100.01.T01:intron 40.0%
GGACTTCTCAATGATCTAGA+GGG - Chr7:73053586-73053605 MsG0780040100.01.T01:intron 40.0%
GGATTGGATGTATAGAGAGA+AGG + Chr7:73052851-73052870 None:intergenic 40.0%
GGCTTGACGATATGAAAAGA+AGG - Chr7:73053986-73054005 MsG0780040100.01.T01:intron 40.0%
GTCAATTTCTGCCATAGACT+TGG + Chr7:73053734-73053753 None:intergenic 40.0%
TAAAACTCGACAAGCAGAAG+CGG - Chr7:73054038-73054057 MsG0780040100.01.T01:intron 40.0%
TATGAAAAGAAGGATGTCGG+AGG - Chr7:73053996-73054015 MsG0780040100.01.T01:intron 40.0%
TATTGCAGGTTCTTGTCCAA+TGG - Chr7:73053194-73053213 MsG0780040100.01.T01:intron 40.0%
TCACAATGTCGCAATCTAGA+CGG - Chr7:73051803-73051822 MsG0780040100.01.T01:intron 40.0%
TCACTTCCTGGTGATCTATT+GGG + Chr7:73053517-73053536 None:intergenic 40.0%
TCTCAATGATCTAGAGGGTT+TGG - Chr7:73053591-73053610 MsG0780040100.01.T01:intron 40.0%
TGAAGAAGTCGCTAATCTTC+AGG - Chr7:73053897-73053916 MsG0780040100.01.T01:CDS 40.0%
TGAATATCTGGAAAACCGTC+AGG + Chr7:73052573-73052592 None:intergenic 40.0%
TGTTTGTGTGATGTCCTCTT+TGG - Chr7:73053320-73053339 MsG0780040100.01.T01:intron 40.0%
TTCACTTCCTGGTGATCTAT+TGG + Chr7:73053518-73053537 None:intergenic 40.0%
TTGCAAATCAGTCTCATGGA+TGG + Chr7:73051372-73051391 None:intergenic 40.0%
! AAGTGAGATTGGCTAACATC+CGG - Chr7:73053812-73053831 MsG0780040100.01.T01:CDS 40.0%
! ATGACCGCGATTTAAAACCT+TGG + Chr7:73051676-73051695 None:intergenic 40.0%
! CCTGCTCTGTAGAATTTGTT+TGG - Chr7:73052176-73052195 MsG0780040100.01.T01:intron 40.0%
! GTTGTTATTGCGGAGAATTC+TGG - Chr7:73051719-73051738 MsG0780040100.01.T01:CDS 40.0%
! TCTTTTCATATCGTCAAGCC+GGG + Chr7:73053986-73054005 None:intergenic 40.0%
!! TCGAAACTTTAAGGTGGTAC+TGG + Chr7:73051262-73051281 None:intergenic 40.0%
!! TTTTTAGCACCCACTAACCA+AGG - Chr7:73051656-73051675 MsG0780040100.01.T01:CDS 40.0%
AAATACGCTCTGTCGACAAC+TGG + Chr7:73052682-73052701 None:intergenic 45.0%
ACCAGGAAGTGAACAGCTAA+AGG - Chr7:73053525-73053544 MsG0780040100.01.T01:intron 45.0%
ACGATGCTTGTGTTATCGAC+TGG + Chr7:73052321-73052340 None:intergenic 45.0%
ACTAAGCTTGGCATGTGTCT+AGG + Chr7:73051918-73051937 None:intergenic 45.0%
AGAGGTGGAGAAAGTGAGAT+TGG - Chr7:73053801-73053820 MsG0780040100.01.T01:intron 45.0%
AGCGGTGATATTTATGCAGC+AGG - Chr7:73053564-73053583 MsG0780040100.01.T01:intron 45.0%
ATCCTGTGAACTGGAGAAGA+TGG - Chr7:73053951-73053970 MsG0780040100.01.T01:intron 45.0%
ATCCTGTGGTTACCGTGTTT+CGG - Chr7:73052260-73052279 MsG0780040100.01.T01:intron 45.0%
ATCTGCTTGCTTTGTCGGTA+AGG + Chr7:73052345-73052364 None:intergenic 45.0%
ATTCCTGAGGGAAAAAGCAG+AGG - Chr7:73052519-73052538 MsG0780040100.01.T01:intron 45.0%
CAATCTTCACACAGTCATCC+CGG + Chr7:73053834-73053853 None:intergenic 45.0%
CACTTCCTGGTGATCTATTG+GGG + Chr7:73053516-73053535 None:intergenic 45.0%
CATGGAAAATTCGCCTACTC+TGG - Chr7:73053759-73053778 MsG0780040100.01.T01:intron 45.0%
CTAAGCTTGGCATGTGTCTA+GGG + Chr7:73051917-73051936 None:intergenic 45.0%
CTCTCTATACATCCAATCCC+AGG - Chr7:73052852-73052871 MsG0780040100.01.T01:CDS 45.0%
CTGACTAATGACTTCGCTGA+GGG - Chr7:73052417-73052436 MsG0780040100.01.T01:intron 45.0%
GACGTTGCAAATCAGTCTCA+TGG + Chr7:73051376-73051395 None:intergenic 45.0%
GAGAGATCTGCTTGCTTTGT+CGG + Chr7:73052350-73052369 None:intergenic 45.0%
GCGGTGATATTTATGCAGCA+GGG - Chr7:73053565-73053584 MsG0780040100.01.T01:intron 45.0%
GGCAGAAATTGACAAGTCCA+TGG - Chr7:73053741-73053760 MsG0780040100.01.T01:intron 45.0%
GGGACTTCTCAATGATCTAG+AGG - Chr7:73053585-73053604 MsG0780040100.01.T01:intron 45.0%
TCCTTTAGCTGTTCACTTCC+TGG + Chr7:73053529-73053548 None:intergenic 45.0%
TGATTGGAAAGACCTGGGAT+TGG + Chr7:73052867-73052886 None:intergenic 45.0%
TGTCGACAGAGCGTATTTCA+GGG - Chr7:73052684-73052703 MsG0780040100.01.T01:CDS 45.0%
TTAATGTGCTCCTCCAGAGT+AGG + Chr7:73053775-73053794 None:intergenic 45.0%
TTGTCGACAGAGCGTATTTC+AGG - Chr7:73052683-73052702 MsG0780040100.01.T01:CDS 45.0%
! AGTGAGATTGGCTAACATCC+GGG - Chr7:73053813-73053832 MsG0780040100.01.T01:CDS 45.0%
! CAGAGTAGGCGAATTTTCCA+TGG + Chr7:73053761-73053780 None:intergenic 45.0%
! GCTGTATCTGAGATTCCTGA+GGG - Chr7:73052507-73052526 MsG0780040100.01.T01:intron 45.0%
! TTCTGAGAATCCTTCACCTG+TGG - Chr7:73052485-73052504 MsG0780040100.01.T01:intron 45.0%
!! GAAAGCTGGGTGCATTGATT+AGG + Chr7:73053478-73053497 None:intergenic 45.0%
!! TCTTGTCCAATGGGTTGGTT+AGG - Chr7:73053204-73053223 MsG0780040100.01.T01:intron 45.0%
!! TGTCGACAACTGGTCTTTGA+GGG + Chr7:73052672-73052691 None:intergenic 45.0%
AAACAGGGTCATGGATCCTG+TGG - Chr7:73052246-73052265 MsG0780040100.01.T01:intron 50.0%
AAGCAGAGGATCACCAACAG+AGG - Chr7:73052533-73052552 MsG0780040100.01.T01:intron 50.0%
AGAAGATGGAGGAAGAGACC+CGG - Chr7:73053965-73053984 MsG0780040100.01.T01:intron 50.0%
CAATGTCGCAATCTAGACGG+CGG - Chr7:73051806-73051825 MsG0780040100.01.T01:intron 50.0%
CAGGTTCTTGTCCAATGGGT+TGG - Chr7:73053199-73053218 MsG0780040100.01.T01:intron 50.0%
CCAGCAAGACATTGACACTC+AGG + Chr7:73051413-73051432 None:intergenic 50.0%
CCTCAGCGAAGTCATTAGTC+AGG + Chr7:73052419-73052438 None:intergenic 50.0%
CCTGACTAATGACTTCGCTG+AGG - Chr7:73052416-73052435 MsG0780040100.01.T01:intron 50.0%
CCTGAGTGTCAATGTCTTGC+TGG - Chr7:73051410-73051429 MsG0780040100.01.T01:CDS 50.0%
CGTTGCCAGCTGTATCAACT+TGG + Chr7:73052395-73052414 None:intergenic 50.0%
CTCCATCTTCTCCAGTTCAC+AGG + Chr7:73053956-73053975 None:intergenic 50.0%
CTGTGAACTGGAGAAGATGG+AGG - Chr7:73053954-73053973 MsG0780040100.01.T01:intron 50.0%
CTTGCGGTGAAAGTAGAAGC+AGG + Chr7:73052806-73052825 None:intergenic 50.0%
GGAAAATTCGCCTACTCTGG+AGG - Chr7:73053762-73053781 MsG0780040100.01.T01:intron 50.0%
GGAATCTCAGATACAGCCAC+AGG + Chr7:73052504-73052523 None:intergenic 50.0%
GTAAGCCCCAATAGATCACC+AGG - Chr7:73053508-73053527 MsG0780040100.01.T01:intron 50.0%
GTCGACAGAGCGTATTTCAG+GGG - Chr7:73052685-73052704 MsG0780040100.01.T01:CDS 50.0%
TCAGATACAGCCACAGGTGA+AGG + Chr7:73052498-73052517 None:intergenic 50.0%
TCGACAGAGCGTATTTCAGG+GGG - Chr7:73052686-73052705 MsG0780040100.01.T01:CDS 50.0%
TGTCTCTCATAGACTCGTGC+TGG + Chr7:73053624-73053643 None:intergenic 50.0%
TTCCGAAACACGGTAACCAC+AGG + Chr7:73052265-73052284 None:intergenic 50.0%
! GGCTGTATCTGAGATTCCTG+AGG - Chr7:73052506-73052525 MsG0780040100.01.T01:intron 50.0%
!! CTGTCGACAACTGGTCTTTG+AGG + Chr7:73052673-73052692 None:intergenic 50.0%
!! GGAGACCAAGTTGATACAGC+TGG - Chr7:73052387-73052406 MsG0780040100.01.T01:intron 50.0%
!!! GATCCTCTGCTTTTTCCCTC+AGG + Chr7:73052525-73052544 None:intergenic 50.0%
AAACGTGAGGTGGGGGTGAA+TGG - Chr7:73051974-73051993 MsG0780040100.01.T01:intron 55.0%
AGACAGACACCATGACCGCA+AGG + Chr7:73051162-73051181 None:intergenic 55.0%
AGCCTTCTCCAGTGCTGTCT+TGG + Chr7:73054106-73054125 None:intergenic 55.0%
AGGCGACCTAACCAACCCAT+TGG + Chr7:73053213-73053232 None:intergenic 55.0%
AGTTGCAGCCAAGACAGCAC+TGG - Chr7:73054095-73054114 MsG0780040100.01.T01:CDS 55.0%
CGCGGTCATGTTGAGATCCT+CGG - Chr7:73051687-73051706 MsG0780040100.01.T01:CDS 55.0%
GGAGAAGGCTAAACGTGCGT+TGG - Chr7:73054116-73054135 MsG0780040100.01.T01:CDS 55.0%
! AGCCAAGACAGCACTGGAGA+AGG - Chr7:73054101-73054120 MsG0780040100.01.T01:CDS 55.0%
CGCAATCTAGACGGCGGTTC+TGG - Chr7:73051812-73051831 MsG0780040100.01.T01:intron 60.0%
CTCGACAAGCAGAAGCGGCA+AGG - Chr7:73054043-73054062 MsG0780040100.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 73051152 73054146 73051152 ID=MsG0780040100.01;Name=MsG0780040100.01
Chr7 mRNA 73051152 73054146 73051152 ID=MsG0780040100.01.T01;Parent=MsG0780040100.01;Name=MsG0780040100.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|496
Chr7 exon 73054054 73054146 73054054 ID=MsG0780040100.01.T01:exon:7535;Parent=MsG0780040100.01.T01
Chr7 exon 73053808 73053942 73053808 ID=MsG0780040100.01.T01:exon:7536;Parent=MsG0780040100.01.T01
Chr7 exon 73052563 73053046 73052563 ID=MsG0780040100.01.T01:exon:7537;Parent=MsG0780040100.01.T01
Chr7 exon 73052001 73052096 73052001 ID=MsG0780040100.01.T01:exon:7538;Parent=MsG0780040100.01.T01
Chr7 exon 73051870 73051914 73051870 ID=MsG0780040100.01.T01:exon:7539;Parent=MsG0780040100.01.T01
Chr7 exon 73051152 73051789 73051152 ID=MsG0780040100.01.T01:exon:7540;Parent=MsG0780040100.01.T01
Chr7 CDS 73054054 73054146 73054054 ID=MsG0780040100.01.T01:cds;Parent=MsG0780040100.01.T01
Chr7 CDS 73053808 73053942 73053808 ID=MsG0780040100.01.T01:cds;Parent=MsG0780040100.01.T01
Chr7 CDS 73052563 73053046 73052563 ID=MsG0780040100.01.T01:cds;Parent=MsG0780040100.01.T01
Chr7 CDS 73052001 73052096 73052001 ID=MsG0780040100.01.T01:cds;Parent=MsG0780040100.01.T01
Chr7 CDS 73051870 73051914 73051870 ID=MsG0780040100.01.T01:cds;Parent=MsG0780040100.01.T01
Chr7 CDS 73051152 73051789 73051152 ID=MsG0780040100.01.T01:cds;Parent=MsG0780040100.01.T01
Gene Sequence

>MsG0780040100.01.T01

ATGGTGTCCTTGCGGTCATGGTGTCTGTCTTCTCAAACCGCTCATACTCCAAATAACTATGGGAGGAAGTTCTTTACATGTCCCATCAGATTGTGGTGTGATGCTACCATCCATGAGACTGATTTGCAACGTCCTTTGTTTACTTATCCTGAGTGTCAATGTCTTGCTGGAGTTTGTAAAAAATTGATGGAAGGAGGAAAGAGCTATTTTATTTGTCCCATTAAACAGGGTCATGGATCCTGTGGTTACCGTGTTTCGGAAGATGAACTTCTCAATAATGCAAGCATTGATGAACCAGTCGATAACACAAGCATCGTACCTTACCGACAAAGCAAGCAGATCTCTCTCAATGAATATATTGAGGGAGACCAAGTTGATACAGCTGGCAACGACCTGACTAATGACTTCGCTGAGGGCAGTGTTTTGCTATCAACGAACAAAAGGATGAGAATAACAGACGGTTCTGAGAATCCTTCACCTGTGGCTGTATCTGAGATTCCTGAGGGAAAAAGCAGAGGATCACCAACAGAGGAAGATAATTCACAACCTGACGGTTTTCCAGATATTCAGTTTGAGTATGATCTAGAATCGATAGACTTAGTTGCAATTGAGGCCGAAGCTTCTCTATCATCTCATTTTTCAACACCCTCAAAGACCAGTTGTCGACAGAGCGTATTTCAGGGGGACATTATTTCTGCTGATGCATCATTTGGTTCTTGTCCAATGGGTTGGTTAGGTCGCCTTATTTTTTTTCATCCAACTCAAAATTTGAAATCCCCTACACACCTAAGCTATTTTTCTGCTGTTAGTATGTTTCAATCATTTGATCCTATGGATGTTCCAAAACAAACGATAAGCCCCAATAGATCACCAGGAAGTGAACAGCTAAAGGAACGAAAACAAAGAGAAGCGGTGATATTTATGCAGCAGGGACTTCTCAATGATCTAGAGGGTTTGGATTTTCACCAGCACGAGTCTATGAGAGACACAGCAGAAGCCGCCTTTTCAGTGTTAAATTGTTTAAGATTTGATTATAAACAATTTTCTGACTATGTATGGGAGTTCATCAATCATGCCAAGTCTATGGCAGAAATTGACAAGTCCATGGAAAATTCGCCTACTCTGGAGGAGCACATTAAATTCTTAGAGGTGGAGAAAGTGAGATTGGCTAACATCCGGGATGACTGTGTGAAGATTGAGACTTCGCTCGCAGTATTTGATGAGAAAAGAAATTTGCTTAGTGAAGAAGTCGCTAATCTTCAGGCCGCGCTCATTCGAAAACAAAAAGAGTTGAAATCCTGTGAACTGGAGAAGATGGAGGAAGAGACCCGGCTTGACGATATGAAAAGAAGGATGTCGGAGGTTGATTCATCCTTAAAAGATAAAACTCGACAAGCAGAAGCGGCAAGGAAAAAAAGTGTAGAGAGAGAGAGAAAGCAAGTTGCAGCCAAGACAGCACTGGAGAAGGCTAAACGTGCGTTGGAAAAGTAG
Protein sequence

>MsG0780040100.01.T01

MVSLRSWCLSSQTAHTPNNYGRKFFTCPIRLWCDATIHETDLQRPLFTYPECQCLAGVCKKLMEGGKSYFICPIKQGHGSCGYRVSEDELLNNASIDEPVDNTSIVPYRQSKQISLNEYIEGDQVDTAGNDLTNDFAEGSVLLSTNKRMRITDGSENPSPVAVSEIPEGKSRGSPTEEDNSQPDGFPDIQFEYDLESIDLVAIEAEASLSSHFSTPSKTSCRQSVFQGDIISADASFGSCPMGWLGRLIFFHPTQNLKSPTHLSYFSAVSMFQSFDPMDVPKQTISPNRSPGSEQLKERKQREAVIFMQQGLLNDLEGLDFHQHESMRDTAEAAFSVLNCLRFDYKQFSDYVWEFINHAKSMAEIDKSMENSPTLEEHIKFLEVEKVRLANIRDDCVKIETSLAVFDEKRNLLSEEVANLQAALIRKQKELKSCELEKMEEETRLDDMKRRMSEVDSSLKDKTRQAEAARKKSVERERKQVAAKTALEKAKRALEK*