AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036941.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036941.01.T01 MTR_7g024090 89.590 317 22 3 1 308 1 315 0.0 570
MsG0780036941.01.T01 MTR_4g063557 63.636 88 32 0 76 163 94 181 3.99e-34 125
MsG0780036941.01.T01 MTR_7g024150 65.060 83 28 1 78 159 11 93 4.84e-29 107
MsG0780036941.01.T01 MTR_3g065490 56.989 93 40 0 76 168 109 201 3.97e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036941.01.T01 AT5G02530 41.294 201 84 3 1 168 1 200 5.88e-35 128
MsG0780036941.01.T01 AT5G02530 41.294 201 84 3 1 168 1 200 6.35e-35 128
MsG0780036941.01.T01 AT5G59950 42.781 187 74 6 1 165 1 176 1.78e-33 122
MsG0780036941.01.T01 AT5G59950 43.243 185 74 6 1 165 1 174 1.86e-33 123
MsG0780036941.01.T01 AT5G59950 42.781 187 74 6 1 165 1 176 3.35e-33 122
MsG0780036941.01.T01 AT5G59950 42.781 187 74 6 1 165 1 176 3.87e-33 122
MsG0780036941.01.T01 AT5G59950 62.222 90 33 1 76 165 22 110 2.71e-32 118
MsG0780036941.01.T01 AT5G37720 53.409 88 39 1 76 163 93 178 6.98e-24 99.0
MsG0780036941.01.T01 AT5G37720 53.409 88 39 1 76 163 93 178 8.03e-24 99.0
MsG0780036941.01.T01 AT1G66260 45.361 97 52 1 76 171 107 203 1.00e-22 95.9
MsG0780036941.01.T01 AT1G66260 45.361 97 52 1 76 171 107 203 1.00e-22 95.9

Find 82 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTCATTATGATCAATT+TGG 0.135951 7:+16841865 MsG0780036941.01.T01:CDS
ATTTGTCTAACTTGGATTAT+AGG 0.156847 7:+16839223 MsG0780036941.01.T01:CDS
TACAGGGAAGAAAGAAAATT+TGG 0.190188 7:+16842495 MsG0780036941.01.T01:intron
CGTGTATGGTCCTGCTTTCT+TGG 0.233960 7:-16842564 None:intergenic
TATGAGCTCTGGAACAAATT+TGG 0.244923 7:+16842107 MsG0780036941.01.T01:CDS
TTTGTCTAACTTGGATTATA+GGG 0.308983 7:+16839224 MsG0780036941.01.T01:CDS
CACCTTGCAAAGACATCATT+TGG 0.314256 7:-16842063 None:intergenic
CCATTCATTATGATCAATTT+GGG 0.320300 7:+16841866 MsG0780036941.01.T01:CDS
CACCTTGCAAAGACATCATT+TGG 0.323688 7:-16842177 None:intergenic
ACTCCTGCTGCTGCGCCTCT+TGG 0.343069 7:+16842018 MsG0780036941.01.T01:CDS
TGTTCCTCAAGAAATGGTTT+TGG 0.343432 7:+16839164 MsG0780036941.01.T01:CDS
CAAACTCTATTTGTCTAACT+TGG 0.346622 7:+16839215 MsG0780036941.01.T01:CDS
TGAGCTTGTTGGAGCAAGTT+TGG 0.346832 7:+16841993 MsG0780036941.01.T01:CDS
CACCTTACAAAGACATCATT+TGG 0.348640 7:-16842252 None:intergenic
CAAGTTAGACAAATAGAGTT+TGG 0.352453 7:-16839214 None:intergenic
CATGAGCTATGGAACAAGTT+TGG 0.358886 7:+16842221 MsG0780036941.01.T01:CDS
TCTTGGTCGAAGTAGCTTAC+TGG 0.368386 7:+16842149 MsG0780036941.01.T01:CDS
TCGCAGACACCGTTGGAATC+TGG 0.370912 7:-16842599 None:intergenic
CTTGGACAAAGTAGCTTACT+AGG 0.389224 7:+16842036 MsG0780036941.01.T01:CDS
TACAACAATATGAAGCTTGA+TGG 0.409513 7:+16841955 MsG0780036941.01.T01:CDS
ACAGCTGTTGTTCTCGGAAG+AGG 0.419689 7:+16841825 MsG0780036941.01.T01:intron
GATCAATTTGGGAGATCAAA+AGG 0.422082 7:+16841877 MsG0780036941.01.T01:CDS
ACATTGCAAATTGAGCTTGT+TGG 0.429062 7:+16841982 MsG0780036941.01.T01:CDS
GACAAATAGAGTTTGGTGAT+AGG 0.440244 7:-16839207 None:intergenic
CCCAAATTGATCATAATGAA+TGG 0.454862 7:-16841866 None:intergenic
TGTCCAAGAGGCGCAGCAGC+AGG 0.466031 7:-16842021 None:intergenic
CAGCAGAAGTTGTCTTTACA+AGG 0.468637 7:+16841902 MsG0780036941.01.T01:CDS
AGTCCTGGTCTTATGAGCTC+TGG 0.470269 7:+16842096 MsG0780036941.01.T01:CDS
ATGAAGGAAAACAAAGGAAA+AGG 0.471066 7:+16842663 MsG0780036941.01.T01:CDS
AAGTACCTGAGAGTGAGAAA+TGG 0.473990 7:-16839018 None:intergenic
GAAAACAAAGGAAAAGGAAA+GGG 0.476925 7:+16842669 MsG0780036941.01.T01:CDS
AGGTGTCAAATTCCGACTCC+TGG 0.478241 7:+16842195 MsG0780036941.01.T01:CDS
GTGGCGAGTTGGTCTGTGGT+TGG 0.480813 7:-16838955 None:intergenic
ACTCCTGCTGATATGCCTCT+TGG 0.494809 7:+16842132 MsG0780036941.01.T01:CDS
TGATGATGTTCCTCAAGAAA+TGG 0.502259 7:+16839158 MsG0780036941.01.T01:CDS
GTACTCCATTTCTCACTCTC+AGG 0.503892 7:+16839013 MsG0780036941.01.T01:CDS
TAATACATGAATGTCTTCGT+TGG 0.505479 7:-16839250 None:intergenic
AAAGAAAATTTGGAGGTAGC+AGG 0.508686 7:+16842505 MsG0780036941.01.T01:CDS
AGGTGCAAAATTCCAAGTCC+TGG 0.511611 7:+16842081 MsG0780036941.01.T01:CDS
GTTGGAGGTGCGGCGGTGAG+TGG 0.513530 7:-16838937 None:intergenic
GAGCTCATAAGACCAGGACT+TGG 0.514703 7:-16842093 None:intergenic
AGGGAAGAAAGAAAATTTGG+AGG 0.515320 7:+16842498 MsG0780036941.01.T01:intron
GACCAAATGATGTCTTTGTA+AGG 0.515429 7:+16842250 MsG0780036941.01.T01:CDS
GTATCGCTCAGAGGCTATGA+AGG 0.516903 7:+16842647 MsG0780036941.01.T01:CDS
CTTGGTCGAAGTAGCTTACT+GGG 0.517273 7:+16842150 MsG0780036941.01.T01:CDS
CAGCTGTTGTTCTCGGAAGA+GGG 0.519739 7:+16841826 MsG0780036941.01.T01:intron
AGTGACATGTCTAGGCCGGC+TGG 0.531260 7:-16838903 None:intergenic
ACTCCTGGTTTCATGAGCTA+TGG 0.536177 7:+16842210 MsG0780036941.01.T01:CDS
GGAAAACAAAGGAAAAGGAA+AGG 0.536187 7:+16842668 MsG0780036941.01.T01:CDS
CGACCAAGAGGCATATCAGC+AGG 0.536972 7:-16842135 None:intergenic
GTCTGTGGTTGGAGGTGCGG+CGG 0.537574 7:-16838944 None:intergenic
CTTGGAAGATAGCCATGTGT+TGG 0.550084 7:-16842546 None:intergenic
AGATCTTTCGCAGACACCGT+TGG 0.563012 7:-16842606 None:intergenic
TTTCGTCGAGTGACATGTCT+AGG 0.564360 7:-16838911 None:intergenic
TGATCCAAAACCATTTCTTG+AGG 0.565878 7:-16839168 None:intergenic
GTTCTCGGAAGAGGGTGAGT+TGG 0.566196 7:+16841834 MsG0780036941.01.T01:CDS
GCGAGTTGGTCTGTGGTTGG+AGG 0.570792 7:-16838952 None:intergenic
TGGCTATCTTCCAAGAAAGC+AGG 0.572819 7:+16842554 MsG0780036941.01.T01:CDS
GTCGAGTGACATGTCTAGGC+CGG 0.574701 7:-16838907 None:intergenic
TTGGTCTGTGGTTGGAGGTG+CGG 0.578364 7:-16838947 None:intergenic
TTCTCCTCCAAAATGCCAGC+CGG 0.579942 7:+16838888 None:intergenic
TGAGAGTGAGAAATGGAGTA+CGG 0.588394 7:-16839011 None:intergenic
TGTCTTTACAAGGCAGTCTG+AGG 0.591733 7:+16841912 MsG0780036941.01.T01:CDS
CACAGACCAACTCGCCACCT+CGG 0.593169 7:+16838960 MsG0780036941.01.T01:CDS
CGAACGCCGAGGTGGCGAGT+TGG 0.593959 7:-16838966 None:intergenic
GTTCCATAGCTCATGAAACC+AGG 0.598365 7:-16842213 None:intergenic
GAAAGATCTTGATGAAGACT+TGG 0.606384 7:+16842620 MsG0780036941.01.T01:CDS
AACCAAATGATGTCTTTGCA+AGG 0.608753 7:+16842061 MsG0780036941.01.T01:CDS
GTTCCAGAGCTCATAAGACC+AGG 0.611855 7:-16842099 None:intergenic
AGCCAAATGATGTCTTTGCA+AGG 0.612404 7:+16842175 MsG0780036941.01.T01:CDS
AGGCTTTAGCAGCTCTCAAG+AGG 0.614864 7:+16841932 MsG0780036941.01.T01:CDS
ATCTTGATGAAGACTTGGAG+AGG 0.624037 7:+16842625 MsG0780036941.01.T01:CDS
AGTAAGCTACTTTGTCCAAG+AGG 0.629482 7:-16842033 None:intergenic
AGCAAAACGCCAGATTCCAA+CGG 0.644000 7:+16842590 MsG0780036941.01.T01:CDS
AATAGCTCTGCACCAACACA+TGG 0.647051 7:+16842534 MsG0780036941.01.T01:CDS
TAGCTCATGAAACCAGGAGT+CGG 0.649403 7:-16842207 None:intergenic
GAGGCTATGAAGGAAAACAA+AGG 0.656184 7:+16842657 MsG0780036941.01.T01:CDS
CTTGGAGAGGTATCGCTCAG+AGG 0.658554 7:+16842638 MsG0780036941.01.T01:CDS
AGTAAGCTACTTCGACCAAG+AGG 0.658801 7:-16842147 None:intergenic
CGAGGTGGCGAGTTGGTCTG+TGG 0.663681 7:-16838959 None:intergenic
AGTTGCTGCGAACGCCGAGG+TGG 0.671552 7:-16838974 None:intergenic
TTGAGTTGCTGCGAACGCCG+AGG 0.690843 7:-16838977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTCATATTATATTGA+TGG + Chr7:16840692-16840711 MsG0780036941.01.T01:intron 10.0%
!!! TTTTTTACAACAAAATAAAA+AGG - Chr7:16841745-16841764 None:intergenic 10.0%
!! AATAGATGAAATAAAAATAG+AGG - Chr7:16840141-16840160 None:intergenic 15.0%
!! GATGAAAATAATAAAAATAG+AGG - Chr7:16840911-16840930 None:intergenic 15.0%
!!! CAAATTTATATGAAATTTTG+TGG - Chr7:16839912-16839931 None:intergenic 15.0%
!!! CTTATTTATATCTGTAATTT+TGG + Chr7:16839510-16839529 MsG0780036941.01.T01:intron 15.0%
!!! TATTTTCCATATTATATTGA+TGG + Chr7:16839880-16839899 MsG0780036941.01.T01:intron 15.0%
!!! TGATACTATTTTTTTTTACA+GGG + Chr7:16842479-16842498 MsG0780036941.01.T01:intron 15.0%
!!! TTGATACTATTTTTTTTTAC+AGG + Chr7:16842478-16842497 MsG0780036941.01.T01:intron 15.0%
!! ACTACTAAAATCTTATTAAG+TGG - Chr7:16840807-16840826 None:intergenic 20.0%
!! CTAAATAAAATCTTATCAAG+TGG - Chr7:16840032-16840051 None:intergenic 20.0%
!! TGATGTATGAATCTTAATTT+GGG + Chr7:16841539-16841558 MsG0780036941.01.T01:intron 20.0%
!!! ACAACAAGTCATTTTTTTAA+TGG - Chr7:16839425-16839444 None:intergenic 20.0%
!!! ATAAGATTTTATTTAGTAGC+TGG + Chr7:16840036-16840055 MsG0780036941.01.T01:intron 20.0%
!!! ATAGTTTTTATTATGTGAGA+GGG + Chr7:16840589-16840608 MsG0780036941.01.T01:intron 20.0%
!!! CTAATAGATTTTCTTTCATA+AGG + Chr7:16841123-16841142 MsG0780036941.01.T01:intron 20.0%
!!! CTTAATAAGATTTTAGTAGT+TGG + Chr7:16840807-16840826 MsG0780036941.01.T01:intron 20.0%
!!! GCAAATTATATGAAATTTTG+TGG - Chr7:16840724-16840743 None:intergenic 20.0%
!!! TATAGTTTTTATTATGTGAG+AGG + Chr7:16840588-16840607 MsG0780036941.01.T01:intron 20.0%
!!! TCTAATAGTTTTCTTTCATA+AGG + Chr7:16840351-16840370 MsG0780036941.01.T01:intron 20.0%
! AATCTATCATCTATGATACA+CGG - Chr7:16839746-16839765 None:intergenic 25.0%
! AATTAAGTAGTAGTACATCA+GGG + Chr7:16840286-16840305 MsG0780036941.01.T01:intron 25.0%
! ACTTGACCATCAATATAATA+TGG - Chr7:16839889-16839908 None:intergenic 25.0%
! AGTTTATTAGATGTTACACA+AGG - Chr7:16842357-16842376 None:intergenic 25.0%
! ATTCATACATCAGATTGATA+TGG - Chr7:16841531-16841550 None:intergenic 25.0%
! ATTTGTCTAACTTGGATTAT+AGG + Chr7:16839223-16839242 MsG0780036941.01.T01:CDS 25.0%
! CCATTCATTATGATCAATTT+GGG + Chr7:16841866-16841885 MsG0780036941.01.T01:CDS 25.0%
! CTGATGTATGAATCTTAATT+TGG + Chr7:16841538-16841557 MsG0780036941.01.T01:intron 25.0%
! GATATGACTTATGAGAAATT+TGG - Chr7:16840951-16840970 None:intergenic 25.0%
! TCCATTCATTATGATCAATT+TGG + Chr7:16841865-16841884 MsG0780036941.01.T01:CDS 25.0%
! TCTACAACTAAGTAATATTG+TGG + Chr7:16839935-16839954 MsG0780036941.01.T01:intron 25.0%
! TTCATACATCAGATTGATAT+GGG - Chr7:16841530-16841549 None:intergenic 25.0%
! TTGTTAAATAGCATCTATAG+CGG - Chr7:16840665-16840684 None:intergenic 25.0%
! TTTGTCTAACTTGGATTATA+GGG + Chr7:16839224-16839243 MsG0780036941.01.T01:CDS 25.0%
!! AGAAGCTTATGATACATTTT+TGG + Chr7:16839985-16840004 MsG0780036941.01.T01:intron 25.0%
!! CTTTGATTTACCTTTAAAAG+AGG - Chr7:16841594-16841613 None:intergenic 25.0%
!! TAGTTTTTATTATGTGAGAG+GGG + Chr7:16840590-16840609 MsG0780036941.01.T01:intron 25.0%
!! TCTTTTATGTCCTCTTTTAA+AGG + Chr7:16841581-16841600 MsG0780036941.01.T01:intron 25.0%
!!! AAAAAGGTTCTGAAAAGAAA+GGG - Chr7:16841729-16841748 None:intergenic 25.0%
!!! ATCGTTTGTTTTGAAGATAT+TGG + Chr7:16841438-16841457 MsG0780036941.01.T01:intron 25.0%
!!! ATTGTTGTTATTTTGTGAGA+GGG + Chr7:16839777-16839796 MsG0780036941.01.T01:intron 25.0%
!!! GAAGCATATGATACATTTTT+TGG + Chr7:16840761-16840780 MsG0780036941.01.T01:intron 25.0%
!!! TAAAAAGGTTCTGAAAAGAA+AGG - Chr7:16841730-16841749 None:intergenic 25.0%
!!! TAAGATTTTAGTAGTTGGAT+TGG + Chr7:16840812-16840831 MsG0780036941.01.T01:intron 25.0%
!!! TATTGTTGTTATTTTGTGAG+AGG + Chr7:16839776-16839795 MsG0780036941.01.T01:intron 25.0%
!!! TTTTAGTTTCTCTGCATTAT+TGG + Chr7:16841382-16841401 MsG0780036941.01.T01:intron 25.0%
ACAAAATATACCAGAGTATG+TGG - Chr7:16841154-16841173 None:intergenic 30.0%
ATCTTGATGAATGAAGTACA+CGG + Chr7:16840248-16840267 MsG0780036941.01.T01:intron 30.0%
ATGAAGGAAAACAAAGGAAA+AGG + Chr7:16842663-16842682 MsG0780036941.01.T01:CDS 30.0%
CAAACTCTATTTGTCTAACT+TGG + Chr7:16839215-16839234 MsG0780036941.01.T01:CDS 30.0%
CAAGTTAGACAAATAGAGTT+TGG - Chr7:16839217-16839236 None:intergenic 30.0%
CAATTAAGTAGTAGTACATC+AGG + Chr7:16840285-16840304 MsG0780036941.01.T01:intron 30.0%
CCCAAATTGATCATAATGAA+TGG - Chr7:16841869-16841888 None:intergenic 30.0%
GAAAACAAAGGAAAAGGAAA+GGG + Chr7:16842669-16842688 MsG0780036941.01.T01:CDS 30.0%
GAGTCATTATTGCAATTAGA+AGG + Chr7:16841613-16841632 MsG0780036941.01.T01:intron 30.0%
GATGAAGATGAAGATCAATT+GGG - Chr7:16841687-16841706 None:intergenic 30.0%
GGTATGACTTATGAGAAATT+TGG - Chr7:16840177-16840196 None:intergenic 30.0%
GTTATTGAGCCAAAATAACT+TGG + Chr7:16840855-16840874 MsG0780036941.01.T01:intron 30.0%
TAATACATGAATGTCTTCGT+TGG - Chr7:16839253-16839272 None:intergenic 30.0%
TACAACAATATGAAGCTTGA+TGG + Chr7:16841955-16841974 MsG0780036941.01.T01:CDS 30.0%
TACAGGGAAGAAAGAAAATT+TGG + Chr7:16842495-16842514 MsG0780036941.01.T01:intron 30.0%
TCATAAGTCATATCAGTCTT+TGG + Chr7:16840957-16840976 MsG0780036941.01.T01:intron 30.0%
TCATACATCAGATTGATATG+GGG - Chr7:16841529-16841548 None:intergenic 30.0%
TGATGAAGATGAAGATCAAT+TGG - Chr7:16841688-16841707 None:intergenic 30.0%
TTGTTAAATAGCATCCATAG+CGG - Chr7:16839853-16839872 None:intergenic 30.0%
! ACCTTTAAGCCAAGTTATTT+TGG - Chr7:16840867-16840886 None:intergenic 30.0%
! TAGATGCTATTTAACAACAC+TGG + Chr7:16840668-16840687 MsG0780036941.01.T01:intron 30.0%
! TATTTTACAGCTGTTGTTCT+CGG + Chr7:16841819-16841838 MsG0780036941.01.T01:intron 30.0%
!! AAAAGGTTCTGAAAAGAAAG+GGG - Chr7:16841728-16841747 None:intergenic 30.0%
!! ATTTTATTTAGTAGCTGGAC+TGG + Chr7:16840041-16840060 MsG0780036941.01.T01:intron 30.0%
!!! AGTTTGGTGATAGGATTTTT+TGG - Chr7:16839201-16839220 None:intergenic 30.0%
!!! CATATCAGTCTTTGGTTTTA+TGG + Chr7:16840965-16840984 MsG0780036941.01.T01:intron 30.0%
!!! TTTTAGCTTCTCTGCATTAT+TGG + Chr7:16841284-16841303 MsG0780036941.01.T01:intron 30.0%
AAAGAAAATTTGGAGGTAGC+AGG + Chr7:16842505-16842524 MsG0780036941.01.T01:CDS 35.0%
AACCAAATGATGTCTTTGCA+AGG + Chr7:16842061-16842080 MsG0780036941.01.T01:CDS 35.0%
ACATTGCAAATTGAGCTTGT+TGG + Chr7:16841982-16842001 MsG0780036941.01.T01:CDS 35.0%
AGCAAATTGTTGCAGTAACA+AGG - Chr7:16841226-16841245 None:intergenic 35.0%
AGCTAAGTAACTTGGCTTAA+AGG + Chr7:16840093-16840112 MsG0780036941.01.T01:intron 35.0%
AGGGAAGAAAGAAAATTTGG+AGG + Chr7:16842498-16842517 MsG0780036941.01.T01:intron 35.0%
ATCATGTGTCAATGTCATGT+CGG - Chr7:16839631-16839650 None:intergenic 35.0%
ATTCATGAAAATGCAGATGC+TGG + Chr7:16839107-16839126 MsG0780036941.01.T01:intron 35.0%
CAATAGCAATCTATGATGCA+CGG - Chr7:16840565-16840584 None:intergenic 35.0%
CACCTTACAAAGACATCATT+TGG - Chr7:16842255-16842274 None:intergenic 35.0%
GAAAGATCTTGATGAAGACT+TGG + Chr7:16842620-16842639 MsG0780036941.01.T01:CDS 35.0%
GAACAGAACTTGAGATTTCA+TGG - Chr7:16842403-16842422 None:intergenic 35.0%
GACCAAATGATGTCTTTGTA+AGG + Chr7:16842250-16842269 MsG0780036941.01.T01:CDS 35.0%
GACTTATGAGAAATTTGGAC+TGG - Chr7:16840172-16840191 None:intergenic 35.0%
GATCAATTTGGGAGATCAAA+AGG + Chr7:16841877-16841896 MsG0780036941.01.T01:CDS 35.0%
GCAAATTGTTGCAGTAACAA+GGG - Chr7:16841225-16841244 None:intergenic 35.0%
GCCAAAATAACTTGGCTTAA+AGG + Chr7:16840863-16840882 MsG0780036941.01.T01:intron 35.0%
GGAAAACAAAGGAAAAGGAA+AGG + Chr7:16842668-16842687 MsG0780036941.01.T01:CDS 35.0%
TCATAAGTCATACCAGTCTT+TGG + Chr7:16840183-16840202 MsG0780036941.01.T01:intron 35.0%
TGACAAGTAGTAGTACATCA+GGG + Chr7:16841057-16841076 MsG0780036941.01.T01:intron 35.0%
TGATCCAAAACCATTTCTTG+AGG - Chr7:16839171-16839190 None:intergenic 35.0%
TTGACAAGTAGTAGTACATC+AGG + Chr7:16841056-16841075 MsG0780036941.01.T01:intron 35.0%
! GACAAATAGAGTTTGGTGAT+AGG - Chr7:16839210-16839229 None:intergenic 35.0%
! GATAAGGTGTTACATACATG+TGG + Chr7:16842437-16842456 MsG0780036941.01.T01:intron 35.0%
! TGATGATGTTCCTCAAGAAA+TGG + Chr7:16839158-16839177 MsG0780036941.01.T01:CDS 35.0%
! TGTTCCTCAAGAAATGGTTT+TGG + Chr7:16839164-16839183 MsG0780036941.01.T01:CDS 35.0%
!! CACTATCGGTTTCACATTAT+CGG + Chr7:16840504-16840523 MsG0780036941.01.T01:intron 35.0%
!! TATGAGCTCTGGAACAAATT+TGG + Chr7:16842107-16842126 MsG0780036941.01.T01:CDS 35.0%
!!! CATACCAGTCTTTGGTTTTA+TGG + Chr7:16840191-16840210 MsG0780036941.01.T01:intron 35.0%
!!! GTGATAGGATTTTTTGGTTG+AGG - Chr7:16839195-16839214 None:intergenic 35.0%
AACGCCATAAAACCAAAGAC+TGG - Chr7:16840198-16840217 None:intergenic 40.0%
AAGCCAAGTTACTTAGCTCA+AGG - Chr7:16840091-16840110 None:intergenic 40.0%
AAGTACCTGAGAGTGAGAAA+TGG - Chr7:16839021-16839040 None:intergenic 40.0%
AGCCAAATGATGTCTTTGCA+AGG + Chr7:16842175-16842194 MsG0780036941.01.T01:CDS 40.0%
AGCTAAGAGCTCATAAGATC+AGG - Chr7:16842291-16842310 None:intergenic 40.0%
AGTCCTTGAGCTAAGTAACT+TGG + Chr7:16840085-16840104 MsG0780036941.01.T01:intron 40.0%
ATCTTGATGAAGACTTGGAG+AGG + Chr7:16842625-16842644 MsG0780036941.01.T01:CDS 40.0%
ATTAGTGGTAGGGGTGAATT+TGG - Chr7:16841658-16841677 None:intergenic 40.0%
CACCTTGCAAAGACATCATT+TGG - Chr7:16842066-16842085 None:intergenic 40.0%
CAGCAGAAGTTGTCTTTACA+AGG + Chr7:16841902-16841921 MsG0780036941.01.T01:CDS 40.0%
CATGAGCTATGGAACAAGTT+TGG + Chr7:16842221-16842240 MsG0780036941.01.T01:CDS 40.0%
CTAGCTCATCATGTAAAACG+TGG + Chr7:16840219-16840238 MsG0780036941.01.T01:intron 40.0%
CTTGGACAAAGTAGCTTACT+AGG + Chr7:16842036-16842055 MsG0780036941.01.T01:CDS 40.0%
GAGGCTATGAAGGAAAACAA+AGG + Chr7:16842657-16842676 MsG0780036941.01.T01:CDS 40.0%
TAAGGACAATCCACATACTC+TGG + Chr7:16841141-16841160 MsG0780036941.01.T01:intron 40.0%
TCAATTGGGCGTAACATTAG+TGG - Chr7:16841673-16841692 None:intergenic 40.0%
TCATGTGTGTGTCATGGATA+AGG + Chr7:16842421-16842440 MsG0780036941.01.T01:intron 40.0%
TGAGAGTGAGAAATGGAGTA+CGG - Chr7:16839014-16839033 None:intergenic 40.0%
TTCTGTTCATGTGTGTGTCA+TGG + Chr7:16842415-16842434 MsG0780036941.01.T01:intron 40.0%
! AGTAAGCTACTTTGTCCAAG+AGG - Chr7:16842036-16842055 None:intergenic 40.0%
! CTTTTGTGAGCGTACACTAT+CGG + Chr7:16840490-16840509 MsG0780036941.01.T01:intron 40.0%
! TGTTGATGCTTGCTACTGTT+TGG + Chr7:16841470-16841489 MsG0780036941.01.T01:intron 40.0%
!! TAGGGGTGAATTTGGTGTTT+GGG - Chr7:16841650-16841669 None:intergenic 40.0%
ACTCCTGGTTTCATGAGCTA+TGG + Chr7:16842210-16842229 MsG0780036941.01.T01:CDS 45.0%
AGCAAAACGCCAGATTCCAA+CGG + Chr7:16842590-16842609 MsG0780036941.01.T01:CDS 45.0%
AGGTGCAAAATTCCAAGTCC+TGG + Chr7:16842081-16842100 MsG0780036941.01.T01:CDS 45.0%
AGTAAGCTACTTCGACCAAG+AGG - Chr7:16842150-16842169 None:intergenic 45.0%
AGTAGTAGTACATCAGGGCA+TGG + Chr7:16840291-16840310 MsG0780036941.01.T01:intron 45.0%
AGTGTACGCTCACAAAAGCT+TGG - Chr7:16840488-16840507 None:intergenic 45.0%
ATGTGTCAATGTCATGTCGG+TGG - Chr7:16839628-16839647 None:intergenic 45.0%
CAGACACAAACACACTGAGA+CGG + Chr7:16839388-16839407 MsG0780036941.01.T01:intron 45.0%
CTTGGAAGATAGCCATGTGT+TGG - Chr7:16842549-16842568 None:intergenic 45.0%
CTTGGTCGAAGTAGCTTACT+GGG + Chr7:16842150-16842169 MsG0780036941.01.T01:CDS 45.0%
GCACAGACACTTCTGATTGA+AGG + Chr7:16839576-16839595 MsG0780036941.01.T01:intron 45.0%
GTACTCCATTTCTCACTCTC+AGG + Chr7:16839013-16839032 MsG0780036941.01.T01:CDS 45.0%
GTCAATGTCCATGTCGTGTA+TGG + Chr7:16839717-16839736 MsG0780036941.01.T01:intron 45.0%
GTCAATGTCCATGTCGTGTT+TGG + Chr7:16840536-16840555 MsG0780036941.01.T01:intron 45.0%
GTTCCATAGCTCATGAAACC+AGG - Chr7:16842216-16842235 None:intergenic 45.0%
TAGCTCATGAAACCAGGAGT+CGG - Chr7:16842210-16842229 None:intergenic 45.0%
TCTTGGTCGAAGTAGCTTAC+TGG + Chr7:16842149-16842168 MsG0780036941.01.T01:CDS 45.0%
TGGCTATCTTCCAAGAAAGC+AGG + Chr7:16842554-16842573 MsG0780036941.01.T01:CDS 45.0%
TGGGCGTAACATTAGTGGTA+GGG - Chr7:16841668-16841687 None:intergenic 45.0%
TGTCTTTACAAGGCAGTCTG+AGG + Chr7:16841912-16841931 MsG0780036941.01.T01:CDS 45.0%
TTGGGCGTAACATTAGTGGT+AGG - Chr7:16841669-16841688 None:intergenic 45.0%
TTTCGTCGAGTGACATGTCT+AGG - Chr7:16838914-16838933 None:intergenic 45.0%
TTTGTGTCTGGTGTCTGTGT+TGG - Chr7:16839378-16839397 None:intergenic 45.0%
! AATAGCTCTGCACCAACACA+TGG + Chr7:16842534-16842553 MsG0780036941.01.T01:CDS 45.0%
!! CAGAAGTGTCAGTGCTACAA+AGG + Chr7:16839473-16839492 MsG0780036941.01.T01:intron 45.0%
!! GGCGTTTTGCTTTTCGTGTA+TGG - Chr7:16842581-16842600 None:intergenic 45.0%
!! GTAGGGGTGAATTTGGTGTT+TGG - Chr7:16841651-16841670 None:intergenic 45.0%
!! GTTCTGAAAAGAAAGGGGTG+AGG - Chr7:16841723-16841742 None:intergenic 45.0%
!! TGAGCTTGTTGGAGCAAGTT+TGG + Chr7:16841993-16842012 MsG0780036941.01.T01:CDS 45.0%
ACAGCTGTTGTTCTCGGAAG+AGG + Chr7:16841825-16841844 MsG0780036941.01.T01:intron 50.0%
ACTCCTGCTGATATGCCTCT+TGG + Chr7:16842132-16842151 MsG0780036941.01.T01:CDS 50.0%
ACTTACCTATTGCGCCGCTA+TGG + Chr7:16839836-16839855 MsG0780036941.01.T01:intron 50.0%
AGATCTTTCGCAGACACCGT+TGG - Chr7:16842609-16842628 None:intergenic 50.0%
AGCATCTATAGCGGCACAGT+AGG - Chr7:16840656-16840675 None:intergenic 50.0%
AGGTGTCAAATTCCGACTCC+TGG + Chr7:16842195-16842214 MsG0780036941.01.T01:CDS 50.0%
CAGCTGTTGTTCTCGGAAGA+GGG + Chr7:16841826-16841845 MsG0780036941.01.T01:intron 50.0%
CGTCTCAGTGTGTTTGTGTC+TGG - Chr7:16839390-16839409 None:intergenic 50.0%
CGTGTATGGTCCTGCTTTCT+TGG - Chr7:16842567-16842586 None:intergenic 50.0%
GAGCTCATAAGACCAGGACT+TGG - Chr7:16842096-16842115 None:intergenic 50.0%
GCTCACAAAAGCTTGACAGC+AGG - Chr7:16840481-16840500 None:intergenic 50.0%
GGGCGTAACATTAGTGGTAG+GGG - Chr7:16841667-16841686 None:intergenic 50.0%
GTATCGCTCAGAGGCTATGA+AGG + Chr7:16842647-16842666 MsG0780036941.01.T01:CDS 50.0%
GTTCCAGAGCTCATAAGACC+AGG - Chr7:16842102-16842121 None:intergenic 50.0%
TGTCAATGTCATGTCGGTGG+CGG - Chr7:16839625-16839644 None:intergenic 50.0%
! AGGCTTTAGCAGCTCTCAAG+AGG + Chr7:16841932-16841951 MsG0780036941.01.T01:CDS 50.0%
!! AGTCCTGGTCTTATGAGCTC+TGG + Chr7:16842096-16842115 MsG0780036941.01.T01:CDS 50.0%
AGCATCCATAGCGGCGCAAT+AGG - Chr7:16839844-16839863 None:intergenic 55.0%
CACGGACACCAAACACGACA+TGG - Chr7:16840547-16840566 None:intergenic 55.0%
CACGGACACCATACACGACA+TGG - Chr7:16839728-16839747 None:intergenic 55.0%
CGCTCACAAAAGCTTGGCAG+CGG - Chr7:16841250-16841269 None:intergenic 55.0%
GCTCACAAAAGCTTGGCAGC+GGG - Chr7:16841249-16841268 None:intergenic 55.0%
GTCGAGTGACATGTCTAGGC+CGG - Chr7:16838910-16838929 None:intergenic 55.0%
GTTCTCGGAAGAGGGTGAGT+TGG + Chr7:16841834-16841853 MsG0780036941.01.T01:CDS 55.0%
TCGCAGACACCGTTGGAATC+TGG - Chr7:16842602-16842621 None:intergenic 55.0%
TTGGTCTGTGGTTGGAGGTG+CGG - Chr7:16838950-16838969 None:intergenic 55.0%
! CGACCAAGAGGCATATCAGC+AGG - Chr7:16842138-16842157 None:intergenic 55.0%
!! CTTGGAGAGGTATCGCTCAG+AGG + Chr7:16842638-16842657 MsG0780036941.01.T01:CDS 55.0%
AGTGACATGTCTAGGCCGGC+TGG - Chr7:16838906-16838925 None:intergenic 60.0%
CACAGACCAACTCGCCACCT+CGG + Chr7:16838960-16838979 MsG0780036941.01.T01:CDS 60.0%
! TTGAGTTGCTGCGAACGCCG+AGG - Chr7:16838980-16838999 None:intergenic 60.0%
!! GCGAGTTGGTCTGTGGTTGG+AGG - Chr7:16838955-16838974 None:intergenic 60.0%
!! GTGGCGAGTTGGTCTGTGGT+TGG - Chr7:16838958-16838977 None:intergenic 60.0%
ACTCCTGCTGCTGCGCCTCT+TGG + Chr7:16842018-16842037 MsG0780036941.01.T01:CDS 65.0%
AGTTGCTGCGAACGCCGAGG+TGG - Chr7:16838977-16838996 None:intergenic 65.0%
! GTCTGTGGTTGGAGGTGCGG+CGG - Chr7:16838947-16838966 None:intergenic 65.0%
! TGTCCAAGAGGCGCAGCAGC+AGG - Chr7:16842024-16842043 None:intergenic 65.0%
!! CGAGGTGGCGAGTTGGTCTG+TGG - Chr7:16838962-16838981 None:intergenic 65.0%
CGAACGCCGAGGTGGCGAGT+TGG - Chr7:16838969-16838988 None:intergenic 70.0%
! GTTGGAGGTGCGGCGGTGAG+TGG - Chr7:16838940-16838959 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 16838900 16842704 16838900 ID=MsG0780036941.01;Name=MsG0780036941.01
Chr7 mRNA 16838900 16842704 16838900 ID=MsG0780036941.01.T01;Parent=MsG0780036941.01;Name=MsG0780036941.01.T01;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|1|1|4|0|308
Chr7 exon 16838900 16839034 16838900 ID=MsG0780036941.01.T01:exon:11494;Parent=MsG0780036941.01.T01
Chr7 exon 16839123 16839266 16839123 ID=MsG0780036941.01.T01:exon:11495;Parent=MsG0780036941.01.T01
Chr7 exon 16841829 16842271 16841829 ID=MsG0780036941.01.T01:exon:11496;Parent=MsG0780036941.01.T01
Chr7 exon 16842500 16842704 16842500 ID=MsG0780036941.01.T01:exon:11497;Parent=MsG0780036941.01.T01
Chr7 CDS 16838900 16839034 16838900 ID=MsG0780036941.01.T01:cds;Parent=MsG0780036941.01.T01
Chr7 CDS 16839123 16839266 16839123 ID=MsG0780036941.01.T01:cds;Parent=MsG0780036941.01.T01
Chr7 CDS 16841829 16842271 16841829 ID=MsG0780036941.01.T01:cds;Parent=MsG0780036941.01.T01
Chr7 CDS 16842500 16842704 16842500 ID=MsG0780036941.01.T01:cds;Parent=MsG0780036941.01.T01
Gene Sequence

>MsG0780036941.01.T01

ATGCCAGCCGGCCTAGACATGTCACTCGACGAAATCACCACTCACCGCCGCACCTCCAACCACAGACCAACTCGCCACCTCGGCGTTCGCAGCAACTCAATCAGAATCACTCCGTACTCCATTTCTCACTCTCAGATGCTGGAAAGAGAAGCGTTGCGAAGAAGCAGTGTTGATGATGTTCCTCAAGAAATGGTTTTGGATCAACCTCAACCAAAAAATCCTATCACCAAACTCTATTTGTCTAACTTGGATTATAGGGTTTCCAACGAAGACATTCATCTGTTGTTCTCGGAAGAGGGTGAGTTGGAAAGTTACTCCATTCATTATGATCAATTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGAGGCTTTAGCAGCTCTCAAGAGGTACAACAATATGAAGCTTGATGGAAAGACATTGCAAATTGAGCTTGTTGGAGCAAGTTTGGTTACTCCTGCTGCTGCGCCTCTTGGACAAAGTAGCTTACTAGGAAAACCAAATGATGTCTTTGCAAGGTGCAAAATTCCAAGTCCTGGTCTTATGAGCTCTGGAACAAATTTGGTTACTCCTGCTGATATGCCTCTTGGTCGAAGTAGCTTACTGGGAAAGCCAAATGATGTCTTTGCAAGGTGTCAAATTCCGACTCCTGGTTTCATGAGCTATGGAACAAGTTTGGTTACTCGACCAAATGATGTCTTTGTAAGGGAAGAAAGAAAATTTGGAGGTAGCAGGTACAATAATAGCTCTGCACCAACACATGGCTATCTTCCAAGAAAGCAGGACCATACACGAAAAGCAAAACGCCAGATTCCAACGGTGTCTGCGAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTCAGAGGCTATGAAGGAAAACAAAGGAAAAGGAAAGGGACATCATGATTGA
Protein sequence

>MsG0780036941.01.T01

MPAGLDMSLDEITTHRRTSNHRPTRHLGVRSNSIRITPYSISHSQMLEREALRRSSVDDVPQEMVLDQPQPKNPITKLYLSNLDYRVSNEDIHLLFSEEGELESYSIHYDQFGRSKGTAEVVFTRQSEALAALKRYNNMKLDGKTLQIELVGASLVTPAAAPLGQSSLLGKPNDVFARCKIPSPGLMSSGTNLVTPADMPLGRSSLLGKPNDVFARCQIPTPGFMSYGTSLVTRPNDVFVREERKFGGSRYNNSSAPTHGYLPRKQDHTRKAKRQIPTVSAKDLDEDLERYRSEAMKENKGKGKGHHD*