AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009783.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009783.01.T01 MTR_2g070540 88.922 334 1 1 1 334 1 298 0.0 599
MsG0280009783.01.T01 MTR_3g092510 57.426 303 89 4 28 327 105 370 3.75e-116 341
MsG0280009783.01.T01 MTR_3g092550 57.006 314 87 4 28 330 104 380 1.53e-113 334
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009783.01.T01 AT3G14450 63.158 323 77 2 17 333 39 325 1.98e-144 411
MsG0280009783.01.T01 AT1G53650 61.709 316 69 6 17 330 38 303 2.41e-134 384
MsG0280009783.01.T01 AT1G53650 60.692 318 75 5 17 330 38 309 9.43e-126 363
MsG0280009783.01.T01 AT1G32790 56.494 308 93 2 28 330 83 354 2.97e-115 338
MsG0280009783.01.T01 AT3G49390 56.579 304 90 5 28 330 87 349 1.03e-112 331
MsG0280009783.01.T01 AT3G49390 56.579 304 90 5 28 330 87 349 1.03e-112 331
MsG0280009783.01.T01 AT3G49390 56.579 304 90 5 28 330 87 349 1.03e-112 331
MsG0280009783.01.T01 AT4G10610 56.393 305 86 3 28 327 66 328 2.03e-111 327
MsG0280009783.01.T01 AT1G32790 55.068 296 92 2 28 318 83 342 1.35e-106 318
MsG0280009783.01.T01 AT1G32790 41.975 81 46 1 246 326 173 252 4.10e-14 73.2
MsG0280009783.01.T01 AT4G10610 55.102 294 85 3 28 316 66 317 2.36e-104 309
MsG0280009783.01.T01 AT4G10610 38.824 85 51 1 242 326 146 229 1.10e-11 65.5
MsG0280009783.01.T01 AT5G24440 46.855 318 120 3 17 325 36 313 5.00e-91 275
MsG0280009783.01.T01 AT5G24440 42.353 85 48 1 242 326 133 216 1.32e-13 70.9

Find 107 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCTCTAACTTAACTTTCT+AGG 0.166323 2:+57934062 MsG0280009783.01.T01:three_prime_UTR
ATTCTCTTCATTTCCATTTC+CGG 0.182647 2:+57928177 MsG0280009783.01.T01:five_prime_UTR
AGATGAGAGAGGAGAGAGTT+TGG 0.192166 2:-57928114 None:intergenic
GTTTCAGTTACTTGGTTATT+TGG 0.204934 2:+57934139 MsG0280009783.01.T01:three_prime_UTR
AAATGGAAATGAAGAGAATT+AGG 0.215402 2:-57928173 None:intergenic
AATCATACCCTTCGATTGTT+TGG 0.222316 2:-57928723 None:intergenic
CTGAATTCAGATTCAGCTTT+TGG 0.224207 2:-57928537 None:intergenic
TTAATAATATACTAAGAAAT+TGG 0.229031 2:-57928223 None:intergenic
TTAGAGCGCAGAACATTTAA+AGG 0.234169 2:-57934048 None:intergenic
GGTTACGCGCTTGAGGCTTT+TGG 0.235319 2:+57932871 MsG0280009783.01.T01:intron
TGAAATTTATATGATGAAAA+TGG 0.243391 2:-57928406 None:intergenic
TTGTCCACAATTGGTGAATA+AGG 0.247931 2:-57929913 None:intergenic
TTCTCTTCATTTCCATTTCC+GGG 0.280238 2:+57928178 MsG0280009783.01.T01:five_prime_UTR
AAACTGTAGCGGCATGCTTT+TGG 0.294414 2:+57933701 MsG0280009783.01.T01:CDS
GTTTGGAATAACAAAGGTTT+TGG 0.298365 2:-57928097 None:intergenic
AATCATGCCTTTCACCAGTT+TGG 0.305370 2:+57934172 MsG0280009783.01.T01:three_prime_UTR
CGTTCAACCTTCTCCTCCCT+TGG 0.306807 2:-57929684 None:intergenic
GCTTAGTGTTGACCAGAAAA+TGG 0.311863 2:-57928680 None:intergenic
TTGTACAAATATTGACAAAA+AGG 0.314486 2:+57932426 MsG0280009783.01.T01:CDS
ACGAGTCTTCATTGATAGTT+TGG 0.320182 2:+57929943 MsG0280009783.01.T01:CDS
TTCAGCTGATGCCAACAAAA+TGG 0.330118 2:+57928506 MsG0280009783.01.T01:CDS
TACATGCTTACTCTTGAGTT+TGG 0.334252 2:+57930215 MsG0280009783.01.T01:CDS
ATCATACCCTTCGATTGTTT+GGG 0.345576 2:-57928722 None:intergenic
AATGGAAATGAAGAGAATTA+GGG 0.376450 2:-57928172 None:intergenic
GGCCTCACTGGAGTCTTTGA+AGG 0.384362 2:-57933848 None:intergenic
CGAGCAACCCTTGGCCTCAC+TGG 0.390725 2:-57933860 None:intergenic
GTAACTTACTTGTCCACAAT+TGG 0.394700 2:-57929922 None:intergenic
GTTATTTAGTTTCAGTTACT+TGG 0.402397 2:+57934131 MsG0280009783.01.T01:three_prime_UTR
AACCTTGGTGGTACTGTGCT+TGG 0.416008 2:+57932149 MsG0280009783.01.T01:CDS
CTTTCCAGTTGAGACTTGTA+TGG 0.420211 2:+57933945 MsG0280009783.01.T01:three_prime_UTR
ATGAAAATGGAAAGAGAAAA+CGG 0.420392 2:-57928393 None:intergenic
AAATAGTTTAAGACCAAGAC+TGG 0.428164 2:-57934089 None:intergenic
ATATTACATTGACCCGGAAA+TGG 0.429552 2:-57928190 None:intergenic
AATGCGGATCACCACAAATT+CGG 0.432023 2:-57931933 None:intergenic
CTTTCTAGGTACCCCAGTCT+TGG 0.438937 2:+57934076 MsG0280009783.01.T01:three_prime_UTR
TTTAATTTATTTATATATCT+GGG 0.450356 2:+57928338 MsG0280009783.01.T01:five_prime_UTR
ATGGTGTTAAATATCCAAAC+TGG 0.451878 2:-57934186 None:intergenic
GTTCAACCTTCTCCTCCCTT+GGG 0.452495 2:-57929683 None:intergenic
CTAAATATCCTCTCAAGTCT+TGG 0.453675 2:-57933918 None:intergenic
TGACGGCCATGATCATGATT+AGG 0.454312 2:-57928633 None:intergenic
GACACAAAGATGAAAATAAC+CGG 0.458794 2:-57933995 None:intergenic
ATTTGTACAATAGACAGTTC+TGG 0.459054 2:-57932413 None:intergenic
TCTTCCATACAAGTCTCAAC+TGG 0.460888 2:-57933949 None:intergenic
GTTCACAAAGCTGAATCCTT+TGG 0.463673 2:+57928581 MsG0280009783.01.T01:CDS
GAGAGAGTTTGGAATAACAA+AGG 0.464902 2:-57928103 None:intergenic
GTTTGGTAATCTGAGTTATG+AGG 0.469128 2:+57930232 MsG0280009783.01.T01:CDS
ATAATGGTACCAAACCTGAT+AGG 0.472253 2:-57933732 None:intergenic
GTCATTGATTGCCGAATTTG+TGG 0.473392 2:+57931922 MsG0280009783.01.T01:CDS
CCGATCGGTTAACGCGATAC+AGG 0.479639 2:-57933884 None:intergenic
TGAATCCTACATTCCTCCCC+AGG 0.485315 2:+57932219 MsG0280009783.01.T01:CDS
CATTGATAGTTTGGTTAGCA+TGG 0.490601 2:+57929952 MsG0280009783.01.T01:CDS
TTCGAAGGAAGGACCCTCAC+TGG 0.492340 2:-57932179 None:intergenic
CAAAGACTCCAGTGAGGCCA+AGG 0.492377 2:+57933852 MsG0280009783.01.T01:CDS
AGTTGAGACTTGTATGGAAG+AGG 0.511196 2:+57933951 MsG0280009783.01.T01:three_prime_UTR
GTGTTGACCAGAAAATGGTT+AGG 0.517283 2:-57928675 None:intergenic
CATACCCTGGGGAGGAATGT+AGG 0.517978 2:-57932224 None:intergenic
GGGAGGAATGTAGGATTCAC+AGG 0.522132 2:-57932215 None:intergenic
TATTCTCCTAATCATGATCA+TGG 0.524419 2:+57928627 MsG0280009783.01.T01:CDS
ATATCCTCTCAAGTCTTGGT+TGG 0.524693 2:-57933914 None:intergenic
GCAAGGGCAGCTTTAAACCT+TGG 0.527689 2:+57932134 MsG0280009783.01.T01:CDS
GCAGCCTTATTCACCAATTG+TGG 0.527712 2:+57929909 MsG0280009783.01.T01:CDS
TATGCAGTCGGATGATGAGC+GGG 0.530361 2:+57932381 MsG0280009783.01.T01:intron
TGATGAGATTAAACCCTTGA+CGG 0.534141 2:-57928650 None:intergenic
GAGAAAGAAAGAGATGAGAG+AGG 0.539765 2:-57928125 None:intergenic
ATCATGATCATGGCCGTCAA+GGG 0.543640 2:+57928637 MsG0280009783.01.T01:CDS
TTTCTTGGTTTAGGTTACTG+AGG 0.557417 2:+57929878 MsG0280009783.01.T01:intron
TTTCACAGGTTACGCGCTTG+AGG 0.557575 2:+57932864 MsG0280009783.01.T01:intron
CCTGTATCGCGTTAACCGAT+CGG 0.562095 2:+57933884 MsG0280009783.01.T01:exon
GATACAGGACGAGCAACCCT+TGG 0.563628 2:-57933869 None:intergenic
TAAATATCCAAACTGGTGAA+AGG 0.567685 2:-57934179 None:intergenic
AAAGCTGAATCCTTTGGCTA+AGG 0.568332 2:+57928587 MsG0280009783.01.T01:CDS
TCATGTCAACAGATGGTGCA+AGG 0.569752 2:+57932117 MsG0280009783.01.T01:intron
ATAATAACCCAAACAATCGA+AGG 0.576301 2:+57928715 MsG0280009783.01.T01:CDS
TGATTAGGAGAATAAGATGA+AGG 0.576404 2:-57928618 None:intergenic
GTTGAACGGAAGATCGCTAA+AGG 0.577137 2:+57929699 MsG0280009783.01.T01:CDS
TTTAACTTACACTGTCTCGT+TGG 0.579243 2:-57928073 None:intergenic
GGGTTATTATCATTAGCAGA+AGG 0.581158 2:-57928702 None:intergenic
CAATTCGAGTTGAATGCACC+TGG 0.583914 2:-57932898 None:intergenic
AACTTCTTTGAATCATCATG+TGG 0.584423 2:+57932749 MsG0280009783.01.T01:CDS
AGGAAAATATTACATTGACC+CGG 0.587581 2:-57928196 None:intergenic
TAGGCTTTAATTCTCTACCA+TGG 0.588186 2:+57928461 MsG0280009783.01.T01:exon
AATCATGATCATGGCCGTCA+AGG 0.590810 2:+57928636 MsG0280009783.01.T01:CDS
AGCAGTAACAACAGTTGCCA+TGG 0.591951 2:-57928478 None:intergenic
TGGTTTAGGTTACTGAGGAG+CGG 0.592921 2:+57929883 MsG0280009783.01.T01:intron
GGAATGTAGGATTCACAGGA+AGG 0.618003 2:-57932211 None:intergenic
TTGGTTGGACAATGTCCGAT+CGG 0.620152 2:-57933899 None:intergenic
AGGGCAGCTTTAAACCTTGG+TGG 0.621096 2:+57932137 MsG0280009783.01.T01:CDS
AATAGTTTAAGACCAAGACT+GGG 0.622086 2:-57934088 None:intergenic
CTTTGAATCATCATGTGGCG+AGG 0.622886 2:+57932754 MsG0280009783.01.T01:CDS
CATGTCAACAGATGGTGCAA+GGG 0.627275 2:+57932118 MsG0280009783.01.T01:intron
GCTTGGATACTATCCAGTGA+GGG 0.628896 2:+57932166 MsG0280009783.01.T01:CDS
AAAGACTCCAGTGAGGCCAA+GGG 0.631851 2:+57933853 MsG0280009783.01.T01:CDS
TTGTCCAACCAAGACTTGAG+AGG 0.636876 2:+57933910 MsG0280009783.01.T01:three_prime_UTR
AATTTCTTCATTCAGCTACG+TGG 0.638328 2:+57930169 MsG0280009783.01.T01:intron
AAAATATTCATACCCTGGGG+AGG 0.643159 2:-57932232 None:intergenic
TAATAACCCAAACAATCGAA+GGG 0.646031 2:+57928716 MsG0280009783.01.T01:CDS
ATATGCAGTCGGATGATGAG+CGG 0.652163 2:+57932380 MsG0280009783.01.T01:intron
GCTACAGTTTAGTGCAACAA+TGG 0.660726 2:-57933688 None:intergenic
GCAAAGCGAAGAACTGAATG+CGG 0.663672 2:-57931949 None:intergenic
CAAGGGAGGAGAAGGTTGAA+CGG 0.663891 2:+57929685 MsG0280009783.01.T01:CDS
ATCACAACATACGATCGCAA+TGG 0.668916 2:-57934205 None:intergenic
GAATCCTACATTCCTCCCCA+GGG 0.668990 2:+57932220 MsG0280009783.01.T01:CDS
ATTGTTGCACTAAACTGTAG+CGG 0.677875 2:+57933690 MsG0280009783.01.T01:CDS
TGCTTGGATACTATCCAGTG+AGG 0.696812 2:+57932165 MsG0280009783.01.T01:CDS
ATCCAAGCACAGTACCACCA+AGG 0.728153 2:-57932151 None:intergenic
ATAGTTTAAGACCAAGACTG+GGG 0.745112 2:-57934087 None:intergenic
GTCCTTCAAAGACTCCAGTG+AGG 0.760009 2:+57933846 MsG0280009783.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAGTTTAAAAAAATGT+TGG - Chr2:57929380-57929399 None:intergenic 10.0%
!! TTAATAATATACTAAGAAAT+TGG - Chr2:57928226-57928245 None:intergenic 10.0%
!! TTATAATTATTTAAATATGG+CGG - Chr2:57931875-57931894 None:intergenic 10.0%
!!! ACATAAAATCAAAAATATTT+TGG + Chr2:57932290-57932309 MsG0280009783.01.T01:intron 10.0%
!!! ATATTAAATTACTTTTTTGA+GGG + Chr2:57930641-57930660 MsG0280009783.01.T01:intron 10.0%
!!! ATGAAATGATTATTTTATTA+TGG - Chr2:57932785-57932804 None:intergenic 10.0%
!!! CTTTAAAATATTTACAAAAT+AGG - Chr2:57933550-57933569 None:intergenic 10.0%
!!! TATATTGTAACATATATTTT+TGG + Chr2:57932487-57932506 MsG0280009783.01.T01:intron 10.0%
!!! TGTTTTTTGAATTTTTTTTT+TGG + Chr2:57930469-57930488 MsG0280009783.01.T01:intron 10.0%
!!! TTTTGATTTTTTTTTTGTTT+TGG + Chr2:57928893-57928912 MsG0280009783.01.T01:intron 10.0%
!!! TTTTTTTTTCTTTTTTTATG+GGG - Chr2:57930746-57930765 None:intergenic 10.0%
!! AAAAAATAACAATCAAAATG+AGG - Chr2:57928764-57928783 None:intergenic 15.0%
!! AAAAATAACAATCAAAATGA+GGG - Chr2:57928763-57928782 None:intergenic 15.0%
!! AAAAATGTAGAATTTACATA+AGG - Chr2:57928321-57928340 None:intergenic 15.0%
!! AGTAATGAAATATGATTTAT+CGG - Chr2:57930868-57930887 None:intergenic 15.0%
!! CAATAAATGCATAAAATATT+AGG - Chr2:57931777-57931796 None:intergenic 15.0%
!! TAAAAGTTATTTATCTCAAA+AGG + Chr2:57932814-57932833 MsG0280009783.01.T01:intron 15.0%
!! TGAAATTTATATGATGAAAA+TGG - Chr2:57928409-57928428 None:intergenic 15.0%
!! TTAGTCAATACTTTATTAAT+TGG + Chr2:57932961-57932980 MsG0280009783.01.T01:intron 15.0%
!!! CTAATATTTTATGCATTTAT+TGG + Chr2:57931775-57931794 MsG0280009783.01.T01:intron 15.0%
!!! GATATTAAATTACTTTTTTG+AGG + Chr2:57930640-57930659 MsG0280009783.01.T01:intron 15.0%
!!! TAACATTTTATTACATCATT+TGG + Chr2:57931892-57931911 MsG0280009783.01.T01:intron 15.0%
!!! TATTAAATTACTTTTTTGAG+GGG + Chr2:57930642-57930661 MsG0280009783.01.T01:intron 15.0%
!! AAATACAACCAATTATAGAA+AGG - Chr2:57932263-57932282 None:intergenic 20.0%
!! AACAAAGTTGAAGTTATTTA+TGG - Chr2:57933024-57933043 None:intergenic 20.0%
!! AAGATGGTGTTTAAATAATT+CGG - Chr2:57929859-57929878 None:intergenic 20.0%
!! AGACAATATATAGAAGATAA+AGG - Chr2:57931699-57931718 None:intergenic 20.0%
!! CAAATTACAAACAAATAACA+CGG - Chr2:57929204-57929223 None:intergenic 20.0%
!! CATGATCAAAATAATGAAAT+AGG - Chr2:57932093-57932112 None:intergenic 20.0%
!! CTGTCATTATTATATTAACT+TGG + Chr2:57933602-57933621 MsG0280009783.01.T01:intron 20.0%
!! GGTTTAAAAGATTCAAAAAT+TGG + Chr2:57932553-57932572 MsG0280009783.01.T01:intron 20.0%
!! TAAATAAGTGCAAATTTAAG+TGG + Chr2:57933501-57933520 MsG0280009783.01.T01:intron 20.0%
!! TCAATTTAGTGAAATAAAGT+AGG + Chr2:57929021-57929040 MsG0280009783.01.T01:intron 20.0%
!! TTAAGAGAATCAATATACAA+AGG - Chr2:57932331-57932350 None:intergenic 20.0%
!! TTGTACAAATATTGACAAAA+AGG + Chr2:57932426-57932445 MsG0280009783.01.T01:CDS 20.0%
!! TTTCTATAATTGGTTGTATT+TGG + Chr2:57932262-57932281 MsG0280009783.01.T01:intron 20.0%
!!! AACTATGATCTCTTTAATTT+TGG + Chr2:57931622-57931641 MsG0280009783.01.T01:intron 20.0%
!!! AATGAAGAAATTGATAGTAA+CGG - Chr2:57930161-57930180 None:intergenic 20.0%
!!! ACATAATAAAGCATCATAAT+AGG - Chr2:57930098-57930117 None:intergenic 20.0%
!!! ATTAAATTACTTTTTTGAGG+GGG + Chr2:57930643-57930662 MsG0280009783.01.T01:intron 20.0%
!!! CTATTTCATTATTTTGATCA+TGG + Chr2:57932091-57932110 MsG0280009783.01.T01:intron 20.0%
!!! GATCATATTTTATTATCCTT+CGG + Chr2:57933809-57933828 MsG0280009783.01.T01:intron 20.0%
!!! TATACTAAGAAATTGGTTTT+AGG - Chr2:57928219-57928238 None:intergenic 20.0%
!!! TATGGAAAAAAATTCACTTT+TGG + Chr2:57929078-57929097 MsG0280009783.01.T01:intron 20.0%
!!! TGAAGATAATCACTTTTTTA+AGG - Chr2:57928367-57928386 None:intergenic 20.0%
!!! TTATCTCAAAAGGTAAATTT+TGG + Chr2:57932824-57932843 MsG0280009783.01.T01:intron 20.0%
!!! TTTTCACATAACATATTCAT+AGG - Chr2:57929528-57929547 None:intergenic 20.0%
! AAATGGAAATGAAGAGAATT+AGG - Chr2:57928176-57928195 None:intergenic 25.0%
! AATGGAAATGAAGAGAATTA+GGG - Chr2:57928175-57928194 None:intergenic 25.0%
! ACTGCATATTACAAAAGAAA+CGG - Chr2:57932369-57932388 None:intergenic 25.0%
! ATAATGCATCCATGAATTAT+CGG + Chr2:57932633-57932652 MsG0280009783.01.T01:intron 25.0%
! ATACAAAACACTGCATTTAA+GGG - Chr2:57931345-57931364 None:intergenic 25.0%
! ATGAAAATGGAAAGAGAAAA+CGG - Chr2:57928396-57928415 None:intergenic 25.0%
! TAATTAGTGTTGTCAAATTG+TGG + Chr2:57933178-57933197 MsG0280009783.01.T01:intron 25.0%
! TAATTATTTAAATATGGCGG+TGG - Chr2:57931872-57931891 None:intergenic 25.0%
! TATAATTGGTTGTATTTGGA+TGG + Chr2:57932266-57932285 MsG0280009783.01.T01:intron 25.0%
! TATTACATCATTTGGATTGA+AGG + Chr2:57931900-57931919 MsG0280009783.01.T01:intron 25.0%
! TCAGTTTAATATCTGATATG+TGG + Chr2:57930602-57930621 MsG0280009783.01.T01:intron 25.0%
! TGAATATGTTATGTGAAAAC+TGG + Chr2:57929529-57929548 MsG0280009783.01.T01:intron 25.0%
! TGTTCAACATAATTCACAAT+TGG - Chr2:57930062-57930081 None:intergenic 25.0%
! TTTAATATCGTATGACTCAT+TGG - Chr2:57930629-57930648 None:intergenic 25.0%
! TTTCCAATCAACAAGATATA+GGG - Chr2:57928959-57928978 None:intergenic 25.0%
! TTTCTGTTCCTTTCTATAAT+TGG + Chr2:57932252-57932271 MsG0280009783.01.T01:intron 25.0%
! TTTGCACTTATTTAAATGAC+TGG - Chr2:57933495-57933514 None:intergenic 25.0%
!! AATCTTTTAAACCATTTGAG+CGG - Chr2:57932546-57932565 None:intergenic 25.0%
!! AGGGCATAATTTTCAAATTA+AGG - Chr2:57930902-57930921 None:intergenic 25.0%
!! ATTTAAACACCATCTTTTCT+TGG + Chr2:57929863-57929882 MsG0280009783.01.T01:intron 25.0%
!! CGGTTTTCTATTATCAAAAT+CGG - Chr2:57929839-57929858 None:intergenic 25.0%
!! GTTATTTAGTTTCAGTTACT+TGG + Chr2:57934131-57934150 MsG0280009783.01.T01:three_prime_UTR 25.0%
!! TAACAGATCTGCATTTTATT+CGG - Chr2:57930842-57930861 None:intergenic 25.0%
!! TGCTTAATAATTTTCGACTA+CGG + Chr2:57929989-57930008 MsG0280009783.01.T01:intron 25.0%
!! TTTCTTTTGTAATATGCAGT+CGG + Chr2:57932369-57932388 MsG0280009783.01.T01:intron 25.0%
!! TTTGTGATGATTTTTGTGAT+GGG + Chr2:57928809-57928828 MsG0280009783.01.T01:intron 25.0%
!! TTTTCCAATCAACAAGATAT+AGG - Chr2:57928960-57928979 None:intergenic 25.0%
!! TTTTGTGATGATTTTTGTGA+TGG + Chr2:57928808-57928827 MsG0280009783.01.T01:intron 25.0%
!!! AACTTTTTAAGCGCTTTTTT+AGG + Chr2:57928442-57928461 MsG0280009783.01.T01:five_prime_UTR 25.0%
!!! AAGCTTTTTATTGTTGTTAC+AGG + Chr2:57931206-57931225 MsG0280009783.01.T01:intron 25.0%
!!! AGCTTTTTATTGTTGTTACA+GGG + Chr2:57931207-57931226 MsG0280009783.01.T01:intron 25.0%
!!! GGTAAAACTACTTTTAGTTT+AGG + Chr2:57932508-57932527 MsG0280009783.01.T01:intron 25.0%
!!! TATACAGACTCTTTGTTTTA+AGG - Chr2:57929122-57929141 None:intergenic 25.0%
!!! TTTTCTGCAGTTTTTTTGTA+TGG + Chr2:57928980-57928999 MsG0280009783.01.T01:intron 25.0%
AAACCCTATATCTTGTTGAT+TGG + Chr2:57928953-57928972 MsG0280009783.01.T01:intron 30.0%
AACAGAAAATATTCATACCC+TGG - Chr2:57932240-57932259 None:intergenic 30.0%
AACATAATTCACAATTGGAG+GGG - Chr2:57930057-57930076 None:intergenic 30.0%
AACTTCTTTGAATCATCATG+TGG + Chr2:57932749-57932768 MsG0280009783.01.T01:CDS 30.0%
AATAAAAAGCTTTCTACCTC+TGG - Chr2:57931198-57931217 None:intergenic 30.0%
AATCCTACTATATGAGGTTT+AGG - Chr2:57930305-57930324 None:intergenic 30.0%
ACACAGAAAATGACAATATC+AGG - Chr2:57929617-57929636 None:intergenic 30.0%
ACAGAAAATATTCATACCCT+GGG - Chr2:57932239-57932258 None:intergenic 30.0%
ACAGACAAAAAAATGCATCT+AGG + Chr2:57930445-57930464 MsG0280009783.01.T01:intron 30.0%
AGAAAGGAAGAAAATCATGA+TGG - Chr2:57933068-57933087 None:intergenic 30.0%
AGGAAAATATTACATTGACC+CGG - Chr2:57928199-57928218 None:intergenic 30.0%
AGGAATTGTTATCTGTGATA+TGG + Chr2:57929060-57929079 MsG0280009783.01.T01:intron 30.0%
AGTTGAAGTTATTTATGGTG+CGG - Chr2:57933019-57933038 None:intergenic 30.0%
ATAATAACCCAAACAATCGA+AGG + Chr2:57928715-57928734 MsG0280009783.01.T01:CDS 30.0%
ATTCTCTTCATTTCCATTTC+CGG + Chr2:57928177-57928196 MsG0280009783.01.T01:five_prime_UTR 30.0%
ATTTGTACAATAGACAGTTC+TGG - Chr2:57932416-57932435 None:intergenic 30.0%
CAAAAACTATCCTCCAATAA+TGG - Chr2:57933751-57933770 None:intergenic 30.0%
CAACATAATTCACAATTGGA+GGG - Chr2:57930058-57930077 None:intergenic 30.0%
CACAATCAAAACGAATCAAA+AGG - Chr2:57931578-57931597 None:intergenic 30.0%
CACAGAAAATGACAATATCA+GGG - Chr2:57929616-57929635 None:intergenic 30.0%
CATACAAAACACTGCATTTA+AGG - Chr2:57931346-57931365 None:intergenic 30.0%
CGTAGTTGTTAATTAAGTAG+GGG + Chr2:57933418-57933437 MsG0280009783.01.T01:intron 30.0%
CTCAAGAAGGAAGAAATAAA+CGG - Chr2:57933655-57933674 None:intergenic 30.0%
GACACAAAGATGAAAATAAC+CGG - Chr2:57933998-57934017 None:intergenic 30.0%
GAGGTTTAGGAGAAATTAAT+GGG - Chr2:57930292-57930311 None:intergenic 30.0%
GCGTAGTTGTTAATTAAGTA+GGG + Chr2:57933417-57933436 MsG0280009783.01.T01:intron 30.0%
GCGTCAATAAGGAAAATAAA+GGG - Chr2:57933399-57933418 None:intergenic 30.0%
GTTTCAGTTACTTGGTTATT+TGG + Chr2:57934139-57934158 MsG0280009783.01.T01:three_prime_UTR 30.0%
TAAATATCCAAACTGGTGAA+AGG - Chr2:57934182-57934201 None:intergenic 30.0%
TAACCTAAACCAAGAAAAGA+TGG - Chr2:57929875-57929894 None:intergenic 30.0%
TAATAACCCAAACAATCGAA+GGG + Chr2:57928716-57928735 MsG0280009783.01.T01:CDS 30.0%
TACATTTGATCTTAGCCAAA+AGG - Chr2:57930569-57930588 None:intergenic 30.0%
TATTCTCCTAATCATGATCA+TGG + Chr2:57928627-57928646 MsG0280009783.01.T01:CDS 30.0%
TCAACATAATTCACAATTGG+AGG - Chr2:57930059-57930078 None:intergenic 30.0%
TGAGGTTTAGGAGAAATTAA+TGG - Chr2:57930293-57930312 None:intergenic 30.0%
TGATTAGGAGAATAAGATGA+AGG - Chr2:57928621-57928640 None:intergenic 30.0%
! AAATAGTTTAAGACCAAGAC+TGG - Chr2:57934092-57934111 None:intergenic 30.0%
! AATACTAGTGTTGTTAGTCA+TGG - Chr2:57933335-57933354 None:intergenic 30.0%
! AATAGTTTAAGACCAAGACT+GGG - Chr2:57934091-57934110 None:intergenic 30.0%
! ATGGTGTTAAATATCCAAAC+TGG - Chr2:57934189-57934208 None:intergenic 30.0%
! CAGCTTAAAATGGAGAATTT+TGG + Chr2:57931099-57931118 MsG0280009783.01.T01:intron 30.0%
! CGTTTTATGACAGCTTAAAA+TGG + Chr2:57931089-57931108 MsG0280009783.01.T01:intron 30.0%
! TGTCGTTATTTCGATTTCAT+TGG + Chr2:57929354-57929373 MsG0280009783.01.T01:intron 30.0%
!! GTCATTTTAACATGTTTACC+AGG + Chr2:57932605-57932624 MsG0280009783.01.T01:intron 30.0%
!! GTTTGGAATAACAAAGGTTT+TGG - Chr2:57928100-57928119 None:intergenic 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + Chr2:57933258-57933277 MsG0280009783.01.T01:intron 30.0%
!! TTTTTATTGTTGTTACAGGG+AGG + Chr2:57931210-57931229 MsG0280009783.01.T01:intron 30.0%
!!! GATTTTTTTCTCAACAGCTA+TGG + Chr2:57931029-57931048 MsG0280009783.01.T01:intron 30.0%
!!! TTCTGGTTTTTTCTGAAACT+GGG + Chr2:57928266-57928285 MsG0280009783.01.T01:five_prime_UTR 30.0%
!!! TTTCTGGTTTTTTCTGAAAC+TGG + Chr2:57928265-57928284 MsG0280009783.01.T01:five_prime_UTR 30.0%
AAAACTCACAAAGCGATAGA+GGG + Chr2:57931260-57931279 MsG0280009783.01.T01:intron 35.0%
AAACACTGCATTTAAGGGTT+TGG - Chr2:57931340-57931359 None:intergenic 35.0%
AACACTGCATTTAAGGGTTT+GGG - Chr2:57931339-57931358 None:intergenic 35.0%
AATCATACCCTTCGATTGTT+TGG - Chr2:57928726-57928745 None:intergenic 35.0%
AATTTCTTCATTCAGCTACG+TGG + Chr2:57930169-57930188 MsG0280009783.01.T01:intron 35.0%
ACATAATTCACAATTGGAGG+GGG - Chr2:57930056-57930075 None:intergenic 35.0%
ACGAACAATCCTACTATATG+AGG - Chr2:57930311-57930330 None:intergenic 35.0%
ACTGAAATTGTCGAAGATTG+CGG - Chr2:57929282-57929301 None:intergenic 35.0%
AGAAGCAGTGTGTCAAATAT+CGG + Chr2:57930985-57931004 MsG0280009783.01.T01:intron 35.0%
AGATAACAATTCCTGATGCA+TGG - Chr2:57929054-57929073 None:intergenic 35.0%
AGTTGAATTGTCGAAGAGAA+AGG - Chr2:57931723-57931742 None:intergenic 35.0%
ATAATGGTACCAAACCTGAT+AGG - Chr2:57933735-57933754 None:intergenic 35.0%
ATAATTGTTGACCGCTCAAA+TGG + Chr2:57932532-57932551 MsG0280009783.01.T01:intron 35.0%
ATATTACATTGACCCGGAAA+TGG - Chr2:57928193-57928212 None:intergenic 35.0%
ATCATACCCTTCGATTGTTT+GGG - Chr2:57928725-57928744 None:intergenic 35.0%
ATGGAATTCATGTCAACAGA+TGG + Chr2:57932110-57932129 MsG0280009783.01.T01:intron 35.0%
ATTATCCTTCGGATTCTGTA+GGG + Chr2:57933820-57933839 MsG0280009783.01.T01:intron 35.0%
ATTGTGCCTTAACACATAGT+AGG - Chr2:57931524-57931543 None:intergenic 35.0%
ATTGTTGCACTAAACTGTAG+CGG + Chr2:57933690-57933709 MsG0280009783.01.T01:CDS 35.0%
CAATCAAAATGAGGGATCAA+AGG - Chr2:57928755-57928774 None:intergenic 35.0%
CAGAAAATATTCATACCCTG+GGG - Chr2:57932238-57932257 None:intergenic 35.0%
CATGTAACTCCGATAATTCA+TGG - Chr2:57932645-57932664 None:intergenic 35.0%
CCAATTTGTGAAAGATTGCA+GGG + Chr2:57931052-57931071 MsG0280009783.01.T01:intron 35.0%
CGCGTAGTTGTTAATTAAGT+AGG + Chr2:57933416-57933435 MsG0280009783.01.T01:intron 35.0%
CGCGTCAATAAGGAAAATAA+AGG - Chr2:57933400-57933419 None:intergenic 35.0%
CTAAATATCCTCTCAAGTCT+TGG - Chr2:57933921-57933940 None:intergenic 35.0%
CTTGGTTAAAAGATCGTCAT+AGG - Chr2:57931460-57931479 None:intergenic 35.0%
CTTTACAAGAACAATCCACT+GGG - Chr2:57933139-57933158 None:intergenic 35.0%
GCGAGACAGATAATTAAGAA+AGG - Chr2:57933084-57933103 None:intergenic 35.0%
GGGTTATTATCATTAGCAGA+AGG - Chr2:57928705-57928724 None:intergenic 35.0%
GGTTAATAAGTAGCACTTCT+TGG + Chr2:57932574-57932593 MsG0280009783.01.T01:intron 35.0%
GTAACTTACTTGTCCACAAT+TGG - Chr2:57929925-57929944 None:intergenic 35.0%
GTGAAATACGCTGTTGTAAA+TGG + Chr2:57930523-57930542 MsG0280009783.01.T01:intron 35.0%
TAACACATAGTAGGATCACA+TGG - Chr2:57931515-57931534 None:intergenic 35.0%
TACATCACCAAAAAACACGT+GGG + Chr2:57932035-57932054 MsG0280009783.01.T01:intron 35.0%
TACATGCTTACTCTTGAGTT+TGG + Chr2:57930215-57930234 MsG0280009783.01.T01:CDS 35.0%
TATTATCCTTCGGATTCTGT+AGG + Chr2:57933819-57933838 MsG0280009783.01.T01:intron 35.0%
TCTCCTAAACCTCATATAGT+AGG + Chr2:57930299-57930318 MsG0280009783.01.T01:intron 35.0%
TGATGAGATTAAACCCTTGA+CGG - Chr2:57928653-57928672 None:intergenic 35.0%
TGTGATCCTACTATGTGTTA+AGG + Chr2:57931515-57931534 MsG0280009783.01.T01:intron 35.0%
TTAACAACTACGCGTCAATA+AGG - Chr2:57933410-57933429 None:intergenic 35.0%
TTACATCACCAAAAAACACG+TGG + Chr2:57932034-57932053 MsG0280009783.01.T01:intron 35.0%
TTAGAGCGCAGAACATTTAA+AGG - Chr2:57934051-57934070 None:intergenic 35.0%
TTCGTAAAGCTTAACTGAAC+TGG + Chr2:57930326-57930345 MsG0280009783.01.T01:intron 35.0%
TTCTCTTCATTTCCATTTCC+GGG + Chr2:57928178-57928197 MsG0280009783.01.T01:five_prime_UTR 35.0%
TTGTCCACAATTGGTGAATA+AGG - Chr2:57929916-57929935 None:intergenic 35.0%
! ACACCATCTTTTCTTGGTTT+AGG + Chr2:57929869-57929888 MsG0280009783.01.T01:intron 35.0%
! ACGAGTCTTCATTGATAGTT+TGG + Chr2:57929943-57929962 MsG0280009783.01.T01:CDS 35.0%
! AGGAGAAACAATTTTACCCA+AGG + Chr2:57929667-57929686 MsG0280009783.01.T01:CDS 35.0%
! ATAGTTTAAGACCAAGACTG+GGG - Chr2:57934090-57934109 None:intergenic 35.0%
! ATCAGGTTTGGTACCATTAT+TGG + Chr2:57933735-57933754 MsG0280009783.01.T01:intron 35.0%
! ATTTGTGTTTGCTACATTCG+TGG + Chr2:57929219-57929238 MsG0280009783.01.T01:intron 35.0%
! CATTGATAGTTTGGTTAGCA+TGG + Chr2:57929952-57929971 MsG0280009783.01.T01:CDS 35.0%
! CTGAATTCAGATTCAGCTTT+TGG - Chr2:57928540-57928559 None:intergenic 35.0%
! GAGAGAGTTTGGAATAACAA+AGG - Chr2:57928106-57928125 None:intergenic 35.0%
! GGAGAAACAATTTTACCCAA+GGG + Chr2:57929668-57929687 MsG0280009783.01.T01:CDS 35.0%
! GTTTGGTAATCTGAGTTATG+AGG + Chr2:57930232-57930251 MsG0280009783.01.T01:CDS 35.0%
! TAGGCTTTAATTCTCTACCA+TGG + Chr2:57928461-57928480 MsG0280009783.01.T01:exon 35.0%
! TGCTTTTGTGGAATTTGCAA+TGG + Chr2:57932919-57932938 MsG0280009783.01.T01:CDS 35.0%
! TTATTTCTTCCTTCTTGAGC+AGG + Chr2:57933656-57933675 MsG0280009783.01.T01:intron 35.0%
! TTTAACTTACACTGTCTCGT+TGG - Chr2:57928076-57928095 None:intergenic 35.0%
! TTTCTTGGTTTAGGTTACTG+AGG + Chr2:57929878-57929897 MsG0280009783.01.T01:intron 35.0%
!! CAAGCCTAACAATTTTGGTA+TGG - Chr2:57930352-57930371 None:intergenic 35.0%
!! GTGAAACTGTCTTTTGTTTC+CGG + Chr2:57933976-57933995 MsG0280009783.01.T01:three_prime_UTR 35.0%
!! TTCAACTCGAATTGCTTTTG+TGG + Chr2:57932907-57932926 MsG0280009783.01.T01:CDS 35.0%
!!! GCAGTTTTTTTGTATGGTGA+AGG + Chr2:57928986-57929005 MsG0280009783.01.T01:intron 35.0%
!!! GCTTTGTGAGTTTTGTTGTA+TGG - Chr2:57931254-57931273 None:intergenic 35.0%
!!! TGATTCGTTTTGATTGTGTC+TGG + Chr2:57931580-57931599 MsG0280009783.01.T01:intron 35.0%
!!! TGGTTTTGAGTCCATTTTGT+TGG - Chr2:57928520-57928539 None:intergenic 35.0%
AAAATATTCATACCCTGGGG+AGG - Chr2:57932235-57932254 None:intergenic 40.0%
AAAGCGTGTTTGCAATGCAA+TGG + Chr2:57933367-57933386 MsG0280009783.01.T01:intron 40.0%
AAAGCTGAATCCTTTGGCTA+AGG + Chr2:57928587-57928606 MsG0280009783.01.T01:CDS 40.0%
AAGTGCAAATTTAAGTGGCG+TGG + Chr2:57933506-57933525 MsG0280009783.01.T01:intron 40.0%
AATCATGCCTTTCACCAGTT+TGG + Chr2:57934172-57934191 MsG0280009783.01.T01:three_prime_UTR 40.0%
AATGATTCATGCACGTGATG+AGG - Chr2:57933466-57933485 None:intergenic 40.0%
AATGCGGATCACCACAAATT+CGG - Chr2:57931936-57931955 None:intergenic 40.0%
ACATTGCCTTTCCATTTCAC+AGG + Chr2:57932850-57932869 MsG0280009783.01.T01:intron 40.0%
AGACAGTATTCCAATGTTGC+TGG + Chr2:57930024-57930043 MsG0280009783.01.T01:intron 40.0%
AGAGAAACCGATATGTTGAC+TGG + Chr2:57933629-57933648 MsG0280009783.01.T01:intron 40.0%
AGTTGAGACTTGTATGGAAG+AGG + Chr2:57933951-57933970 MsG0280009783.01.T01:three_prime_UTR 40.0%
ATACGACACGTATCATGCTA+TGG + Chr2:57929498-57929517 MsG0280009783.01.T01:intron 40.0%
ATATCCTCTCAAGTCTTGGT+TGG - Chr2:57933917-57933936 None:intergenic 40.0%
ATGGATGCATTATGCTATCC+TGG - Chr2:57932626-57932645 None:intergenic 40.0%
CAAAACTCACAAAGCGATAG+AGG + Chr2:57931259-57931278 MsG0280009783.01.T01:intron 40.0%
CATAATTCACAATTGGAGGG+GGG - Chr2:57930055-57930074 None:intergenic 40.0%
CCCTGCAATCTTTCACAAAT+TGG - Chr2:57931055-57931074 None:intergenic 40.0%
CCTTTACAAGAACAATCCAC+TGG - Chr2:57933140-57933159 None:intergenic 40.0%
CTGCATTGTGATGGCATTTA+TGG + Chr2:57929245-57929264 MsG0280009783.01.T01:intron 40.0%
CTGGCCATACCAAAATTGTT+AGG + Chr2:57930345-57930364 MsG0280009783.01.T01:intron 40.0%
CTTTCCAGTTGAGACTTGTA+TGG + Chr2:57933945-57933964 MsG0280009783.01.T01:three_prime_UTR 40.0%
GAGAAAGAAAGAGATGAGAG+AGG - Chr2:57928128-57928147 None:intergenic 40.0%
GCCAATTTGTGAAAGATTGC+AGG + Chr2:57931051-57931070 MsG0280009783.01.T01:intron 40.0%
GCGCTCTAACTTAACTTTCT+AGG + Chr2:57934062-57934081 MsG0280009783.01.T01:three_prime_UTR 40.0%
GCTACAGTTTAGTGCAACAA+TGG - Chr2:57933691-57933710 None:intergenic 40.0%
GGAAAAAACTCCTTAGCCAA+AGG - Chr2:57928600-57928619 None:intergenic 40.0%
GTTCACAAAGCTGAATCCTT+TGG + Chr2:57928581-57928600 MsG0280009783.01.T01:CDS 40.0%
GTTTGAATTTCACTACGCTG+CGG - Chr2:57933292-57933311 None:intergenic 40.0%
TAAACGGCCAGTCAACATAT+CGG - Chr2:57933639-57933658 None:intergenic 40.0%
TAACCAAGTCCACACTAGAA+GGG + Chr2:57931472-57931491 MsG0280009783.01.T01:intron 40.0%
TCTTCCATACAAGTCTCAAC+TGG - Chr2:57933952-57933971 None:intergenic 40.0%
TGTAAGTTATGCATCACCAG+AGG + Chr2:57931179-57931198 MsG0280009783.01.T01:intron 40.0%
TTAACCAAGTCCACACTAGA+AGG + Chr2:57931471-57931490 MsG0280009783.01.T01:intron 40.0%
TTCAGCTGATGCCAACAAAA+TGG + Chr2:57928506-57928525 MsG0280009783.01.T01:CDS 40.0%
TTGTGTCTGGACTGTGAATT+TGG + Chr2:57931593-57931612 MsG0280009783.01.T01:intron 40.0%
! AATCCAGGTCAGATTTTCGA+TGG - Chr2:57931310-57931329 None:intergenic 40.0%
! AATTGTTTCTCCTCTGCAAG+AGG - Chr2:57929660-57929679 None:intergenic 40.0%
! AGCGTGATTTTGTTCGTTTC+TGG + Chr2:57928249-57928268 MsG0280009783.01.T01:five_prime_UTR 40.0%
! AGGTTTGGTACCATTATTGG+AGG + Chr2:57933738-57933757 MsG0280009783.01.T01:intron 40.0%
! ATATACCTTTCTCGGCCTTT+TGG + Chr2:57930551-57930570 MsG0280009783.01.T01:intron 40.0%
! ATCCAGGTCAGATTTTCGAT+GGG - Chr2:57931309-57931328 None:intergenic 40.0%
! ATTGTTTCTCCTCTGCAAGA+GGG - Chr2:57929659-57929678 None:intergenic 40.0%
! CATCACTCCTAACCATTTTC+TGG + Chr2:57928668-57928687 MsG0280009783.01.T01:CDS 40.0%
! GAAACAATTTTACCCAAGGG+AGG + Chr2:57929671-57929690 MsG0280009783.01.T01:CDS 40.0%
! GCAGTGTTATCGATTACAGA+TGG - Chr2:57931142-57931161 None:intergenic 40.0%
! GGTGTCAAGCCTAACAATTT+TGG - Chr2:57930357-57930376 None:intergenic 40.0%
! GTCATTGATTGCCGAATTTG+TGG + Chr2:57931922-57931941 MsG0280009783.01.T01:CDS 40.0%
! GTGTTGACCAGAAAATGGTT+AGG - Chr2:57928678-57928697 None:intergenic 40.0%
! TGAATTGTGTTTGTGCTGCT+TGG + Chr2:57928859-57928878 MsG0280009783.01.T01:intron 40.0%
!! CCAGTGGATTGTTCTTGTAA+AGG + Chr2:57933137-57933156 MsG0280009783.01.T01:intron 40.0%
!! GCTTAGTGTTGACCAGAAAA+TGG - Chr2:57928683-57928702 None:intergenic 40.0%
!! TGGTGTCGATATACCTTTCT+CGG + Chr2:57930543-57930562 MsG0280009783.01.T01:intron 40.0%
!!! AGAATTTTGGCTTTCTGCCA+TGG + Chr2:57931112-57931131 MsG0280009783.01.T01:intron 40.0%
!!! ATTACTTTTTTGAGGGGGAG+AGG + Chr2:57930648-57930667 MsG0280009783.01.T01:intron 40.0%
AACCAAGTCCACACTAGAAG+GGG + Chr2:57931473-57931492 MsG0280009783.01.T01:intron 45.0%
AAGTGTGCCTCGAAATGCAT+AGG - Chr2:57933111-57933130 None:intergenic 45.0%
AATCATGATCATGGCCGTCA+AGG + Chr2:57928636-57928655 MsG0280009783.01.T01:CDS 45.0%
ACTTACCCTACAGAATCCGA+AGG - Chr2:57933828-57933847 None:intergenic 45.0%
AGAAGGGGAGGAATACTCAT+AGG + Chr2:57931488-57931507 MsG0280009783.01.T01:intron 45.0%
AGATGAGAGAGGAGAGAGTT+TGG - Chr2:57928117-57928136 None:intergenic 45.0%
AGCAGTAACAACAGTTGCCA+TGG - Chr2:57928481-57928500 None:intergenic 45.0%
AGTGTGTCAAATATCGGCCA+TGG + Chr2:57930991-57931010 MsG0280009783.01.T01:intron 45.0%
ATATGCAGTCGGATGATGAG+CGG + Chr2:57932380-57932399 MsG0280009783.01.T01:intron 45.0%
ATCATGATCATGGCCGTCAA+GGG + Chr2:57928637-57928656 MsG0280009783.01.T01:CDS 45.0%
CATAAAACGTCATCGCGTTG+CGG - Chr2:57931078-57931097 None:intergenic 45.0%
CATGTCAACAGATGGTGCAA+GGG + Chr2:57932118-57932137 MsG0280009783.01.T01:intron 45.0%
CGTAGTAATGCTTCGTTCTC+AGG + Chr2:57931386-57931405 MsG0280009783.01.T01:intron 45.0%
CTTCGTTCTCAGGATCGAAA+TGG + Chr2:57931396-57931415 MsG0280009783.01.T01:intron 45.0%
CTTTGAATCATCATGTGGCG+AGG + Chr2:57932754-57932773 MsG0280009783.01.T01:CDS 45.0%
GCAAAGCGAAGAACTGAATG+CGG - Chr2:57931952-57931971 None:intergenic 45.0%
GCGTAACCTGTGAAATGGAA+AGG - Chr2:57932859-57932878 None:intergenic 45.0%
GCTTGGATACTATCCAGTGA+GGG + Chr2:57932166-57932185 MsG0280009783.01.T01:CDS 45.0%
GGAATGTAGGATTCACAGGA+AGG - Chr2:57932214-57932233 None:intergenic 45.0%
GTTGAACGGAAGATCGCTAA+AGG + Chr2:57929699-57929718 MsG0280009783.01.T01:CDS 45.0%
TAGGAGAGAAACCATGCATC+AGG + Chr2:57929040-57929059 MsG0280009783.01.T01:intron 45.0%
TCATGTCAACAGATGGTGCA+AGG + Chr2:57932117-57932136 MsG0280009783.01.T01:intron 45.0%
TGACGGCCATGATCATGATT+AGG - Chr2:57928636-57928655 None:intergenic 45.0%
TGCTTGGATACTATCCAGTG+AGG + Chr2:57932165-57932184 MsG0280009783.01.T01:CDS 45.0%
TGGGATAGTCTGTTGTGTGT+GGG - Chr2:57930927-57930946 None:intergenic 45.0%
TTGGGATAGTCTGTTGTGTG+TGG - Chr2:57930928-57930947 None:intergenic 45.0%
TTGGTTGGACAATGTCCGAT+CGG - Chr2:57933902-57933921 None:intergenic 45.0%
TTGTCCAACCAAGACTTGAG+AGG + Chr2:57933910-57933929 MsG0280009783.01.T01:three_prime_UTR 45.0%
TTGTTACAGGGAGGTCATGA+AGG + Chr2:57931219-57931238 MsG0280009783.01.T01:intron 45.0%
! AAACTGTAGCGGCATGCTTT+TGG + Chr2:57933701-57933720 MsG0280009783.01.T01:CDS 45.0%
! AACTGTAGCGGCATGCTTTT+GGG + Chr2:57933702-57933721 MsG0280009783.01.T01:CDS 45.0%
! ATTTTACCCAAGGGAGGAGA+AGG + Chr2:57929677-57929696 MsG0280009783.01.T01:CDS 45.0%
! CTACAATGTGTTTTCCGCAG+TGG + Chr2:57931283-57931302 MsG0280009783.01.T01:intron 45.0%
! GGAAGGATAGCAGTTTTCGA+AGG - Chr2:57932197-57932216 None:intergenic 45.0%
! GGATAGCAGTTTTCGAAGGA+AGG - Chr2:57932193-57932212 None:intergenic 45.0%
! TGACTGTGTGTGCGTCTTTT+GGG - Chr2:57930946-57930965 None:intergenic 45.0%
! TGGTTTAGGTTACTGAGGAG+CGG + Chr2:57929883-57929902 MsG0280009783.01.T01:intron 45.0%
!! CAATTCGAGTTGAATGCACC+TGG - Chr2:57932901-57932920 None:intergenic 45.0%
!! GCAGCCTTATTCACCAATTG+TGG + Chr2:57929909-57929928 MsG0280009783.01.T01:CDS 45.0%
!! TTTTGGGAACTCAGCCTATC+AGG + Chr2:57933718-57933737 MsG0280009783.01.T01:CDS 45.0%
!! ATAAAAAAAGAAAAAAAAAA+TGG + Chr2:57930747-57930766 MsG0280009783.01.T01:intron 5.0%
!! ATGTTATAATTATTTAAATA+TGG - Chr2:57931878-57931897 None:intergenic 5.0%
!!! ATTTTTTTTTTCTTTTTTTA+TGG - Chr2:57930748-57930767 None:intergenic 5.0%
!!! TTTAATTTATTTATATATCT+GGG + Chr2:57928338-57928357 MsG0280009783.01.T01:five_prime_UTR 5.0%
!!! TTTTAATTTATTTATATATC+TGG + Chr2:57928337-57928356 MsG0280009783.01.T01:five_prime_UTR 5.0%
!!! TTTTTTTTTTCTTTTTTTAT+GGG - Chr2:57930747-57930766 None:intergenic 5.0%
AAAGACTCCAGTGAGGCCAA+GGG + Chr2:57933853-57933872 MsG0280009783.01.T01:CDS 50.0%
AGGATCGCCATTACAGCTCA+TGG - Chr2:57931440-57931459 None:intergenic 50.0%
AGTCCAGTAGCAAGCTACTG+AGG - Chr2:57930677-57930696 None:intergenic 50.0%
ATCCAAGCACAGTACCACCA+AGG - Chr2:57932154-57932173 None:intergenic 50.0%
CAAGCGCGTAACCTGTGAAA+TGG - Chr2:57932864-57932883 None:intergenic 50.0%
CAAGGGAGGAGAAGGTTGAA+CGG + Chr2:57929685-57929704 MsG0280009783.01.T01:CDS 50.0%
CACGCTTCCATGAGCTGTAA+TGG + Chr2:57931430-57931449 MsG0280009783.01.T01:intron 50.0%
CACTTTCTGCCTGCTCAAGA+AGG - Chr2:57933668-57933687 None:intergenic 50.0%
CCTGTATCGCGTTAACCGAT+CGG + Chr2:57933884-57933903 MsG0280009783.01.T01:exon 50.0%
CGATTACAGATGGCAGACCA+TGG - Chr2:57931132-57931151 None:intergenic 50.0%
CGCAAGACCTATGCATTTCG+AGG + Chr2:57933101-57933120 MsG0280009783.01.T01:intron 50.0%
CTTAGCCAAAAGGCCGAGAA+AGG - Chr2:57930559-57930578 None:intergenic 50.0%
CTTTCTAGGTACCCCAGTCT+TGG + Chr2:57934076-57934095 MsG0280009783.01.T01:three_prime_UTR 50.0%
GAAACTCACACACAACTGCG+AGG - Chr2:57930403-57930422 None:intergenic 50.0%
GAATCCTACATTCCTCCCCA+GGG + Chr2:57932220-57932239 MsG0280009783.01.T01:CDS 50.0%
GGAACTCAGCCTATCAGGTT+TGG + Chr2:57933723-57933742 MsG0280009783.01.T01:intron 50.0%
GGATAGTCTGTTGTGTGTGG+GGG - Chr2:57930925-57930944 None:intergenic 50.0%
GGGAGGAATGTAGGATTCAC+AGG - Chr2:57932218-57932237 None:intergenic 50.0%
GGGATAGTCTGTTGTGTGTG+GGG - Chr2:57930926-57930945 None:intergenic 50.0%
GGGGGAAATTCCAGCAACAT+TGG - Chr2:57930037-57930056 None:intergenic 50.0%
GTATTCCTCCCCTTCTAGTG+TGG - Chr2:57931484-57931503 None:intergenic 50.0%
GTCCTTCAAAGACTCCAGTG+AGG + Chr2:57933846-57933865 MsG0280009783.01.T01:CDS 50.0%
GTGTCAAATATCGGCCATGG+CGG + Chr2:57930994-57931013 MsG0280009783.01.T01:intron 50.0%
GTTCAACCTTCTCCTCCCTT+GGG - Chr2:57929686-57929705 None:intergenic 50.0%
GTTGCACTATTGCATGAGCC+AGG + Chr2:57930716-57930735 MsG0280009783.01.T01:intron 50.0%
TATGCAGTCGGATGATGAGC+GGG + Chr2:57932381-57932400 MsG0280009783.01.T01:intron 50.0%
TGAATCCTACATTCCTCCCC+AGG + Chr2:57932219-57932238 MsG0280009783.01.T01:CDS 50.0%
TTAGGCTTGACACCTTCTCC+CGG + Chr2:57930363-57930382 MsG0280009783.01.T01:intron 50.0%
TTTCACAGGTTACGCGCTTG+AGG + Chr2:57932864-57932883 MsG0280009783.01.T01:intron 50.0%
! AACCTTGGTGGTACTGTGCT+TGG + Chr2:57932149-57932168 MsG0280009783.01.T01:CDS 50.0%
! AGATTTTCGATGGGCCACTG+CGG - Chr2:57931300-57931319 None:intergenic 50.0%
! GGGTTTGGGACAACAAATCC+AGG - Chr2:57931325-57931344 None:intergenic 50.0%
! GTGACTGTGTGTGCGTCTTT+TGG - Chr2:57930947-57930966 None:intergenic 50.0%
! GTTACGCGCTTGAGGCTTTT+GGG + Chr2:57932872-57932891 MsG0280009783.01.T01:CDS 50.0%
! TTACGCGCTTGAGGCTTTTG+GGG + Chr2:57932873-57932892 MsG0280009783.01.T01:CDS 50.0%
!! AGGGCAGCTTTAAACCTTGG+TGG + Chr2:57932137-57932156 MsG0280009783.01.T01:CDS 50.0%
!! GCAAGGGCAGCTTTAAACCT+TGG + Chr2:57932134-57932153 MsG0280009783.01.T01:CDS 50.0%
!! TCACCTCAGTAGCTTGCTAC+TGG + Chr2:57930671-57930690 MsG0280009783.01.T01:intron 50.0%
!!! CTTTTTTTATGGGGTGCGCC+TGG - Chr2:57930737-57930756 None:intergenic 50.0%
AGGCACACTTTCGTTCCCAG+TGG + Chr2:57933121-57933140 MsG0280009783.01.T01:intron 55.0%
AGTCTGTTGTGTGTGGGGGA+GGG - Chr2:57930921-57930940 None:intergenic 55.0%
CAAAGACTCCAGTGAGGCCA+AGG + Chr2:57933852-57933871 MsG0280009783.01.T01:CDS 55.0%
CAAGTCCACACTAGAAGGGG+AGG + Chr2:57931476-57931495 MsG0280009783.01.T01:intron 55.0%
CATACCCTGGGGAGGAATGT+AGG - Chr2:57932227-57932246 None:intergenic 55.0%
CCGATCGGTTAACGCGATAC+AGG - Chr2:57933887-57933906 None:intergenic 55.0%
CGTTCAACCTTCTCCTCCCT+TGG - Chr2:57929687-57929706 None:intergenic 55.0%
CTCCCCTTCTAGTGTGGACT+TGG - Chr2:57931478-57931497 None:intergenic 55.0%
GATACAGGACGAGCAACCCT+TGG - Chr2:57933872-57933891 None:intergenic 55.0%
GGCCCATCGAAAATCTGACC+TGG + Chr2:57931304-57931323 MsG0280009783.01.T01:intron 55.0%
GGCCTCACTGGAGTCTTTGA+AGG - Chr2:57933851-57933870 None:intergenic 55.0%
TAGGCTTGACACCTTCTCCC+GGG + Chr2:57930364-57930383 MsG0280009783.01.T01:intron 55.0%
TAGTCTGTTGTGTGTGGGGG+AGG - Chr2:57930922-57930941 None:intergenic 55.0%
TCGTGGTCGCTGCATTGTGA+TGG + Chr2:57929236-57929255 MsG0280009783.01.T01:intron 55.0%
TTCGAAGGAAGGACCCTCAC+TGG - Chr2:57932182-57932201 None:intergenic 55.0%
TTTGCACTGCCCTCTTGCAG+AGG + Chr2:57929647-57929666 MsG0280009783.01.T01:intron 55.0%
! CAGCTCATGGAAGCGTGAGA+TGG - Chr2:57931427-57931446 None:intergenic 55.0%
! GGTTACGCGCTTGAGGCTTT+TGG + Chr2:57932871-57932890 MsG0280009783.01.T01:intron 55.0%
! TACGCGCTTGAGGCTTTTGG+GGG + Chr2:57932874-57932893 MsG0280009783.01.T01:CDS 55.0%
!!! GTGTGCGCCCACGTGTTTTT+TGG - Chr2:57932045-57932064 None:intergenic 55.0%
CACACACAACTGCGAGGTCC+CGG - Chr2:57930397-57930416 None:intergenic 60.0%
CCTTCTCCCGGGTTCGAATC+CGG + Chr2:57930375-57930394 MsG0280009783.01.T01:intron 60.0%
CTTCTCCCGGGTTCGAATCC+GGG + Chr2:57930376-57930395 MsG0280009783.01.T01:intron 60.0%
TCCTCCATCGCATTCCGCCA+TGG - Chr2:57931011-57931030 None:intergenic 60.0%
!! CTTGAGGCTTTTGGGGGACC+AGG + Chr2:57932880-57932899 MsG0280009783.01.T01:CDS 60.0%
CCGGATTCGAACCCGGGAGA+AGG - Chr2:57930378-57930397 None:intergenic 65.0%
CGAGCAACCCTTGGCCTCAC+TGG - Chr2:57933863-57933882 None:intergenic 65.0%
CGAGGTCCCGGATTCGAACC+CGG - Chr2:57930385-57930404 None:intergenic 65.0%
GAGGTCCCGGATTCGAACCC+GGG - Chr2:57930384-57930403 None:intergenic 65.0%
! GCCATGGCGGAATGCGATGG+AGG + Chr2:57931007-57931026 MsG0280009783.01.T01:intron 65.0%
! TCGGCCATGGCGGAATGCGA+TGG + Chr2:57931004-57931023 MsG0280009783.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 57928069 57934223 57928069 ID=MsG0280009783.01;Name=MsG0280009783.01
Chr2 mRNA 57928069 57934223 57928069 ID=MsG0280009783.01.T01;Parent=MsG0280009783.01;Name=MsG0280009783.01.T01;_AED=0.36;_eAED=0.40;_QI=411|0.8|0.81|1|1|1|11|325|334
Chr2 exon 57928069 57928737 57928069 ID=MsG0280009783.01.T01:exon:38379;Parent=MsG0280009783.01.T01
Chr2 exon 57929667 57929777 57929667 ID=MsG0280009783.01.T01:exon:38380;Parent=MsG0280009783.01.T01
Chr2 exon 57929891 57929973 57929891 ID=MsG0280009783.01.T01:exon:38381;Parent=MsG0280009783.01.T01
Chr2 exon 57930184 57930253 57930184 ID=MsG0280009783.01.T01:exon:38382;Parent=MsG0280009783.01.T01
Chr2 exon 57931922 57931994 57931922 ID=MsG0280009783.01.T01:exon:38383;Parent=MsG0280009783.01.T01
Chr2 exon 57932129 57932241 57932129 ID=MsG0280009783.01.T01:exon:38384;Parent=MsG0280009783.01.T01
Chr2 exon 57932388 57932447 57932388 ID=MsG0280009783.01.T01:exon:38385;Parent=MsG0280009783.01.T01
Chr2 exon 57932728 57932775 57932728 ID=MsG0280009783.01.T01:exon:38386;Parent=MsG0280009783.01.T01
Chr2 exon 57932872 57932940 57932872 ID=MsG0280009783.01.T01:exon:38387;Parent=MsG0280009783.01.T01
Chr2 exon 57933678 57933739 57933678 ID=MsG0280009783.01.T01:exon:38388;Parent=MsG0280009783.01.T01
Chr2 exon 57933841 57934223 57933841 ID=MsG0280009783.01.T01:exon:38389;Parent=MsG0280009783.01.T01
Chr2 five_prime_UTR 57928069 57928479 57928069 ID=MsG0280009783.01.T01:five_prime_utr;Parent=MsG0280009783.01.T01
Chr2 CDS 57928480 57928737 57928480 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57929667 57929777 57929667 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57929891 57929973 57929891 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57930184 57930253 57930184 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57931922 57931994 57931922 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57932129 57932241 57932129 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57932388 57932447 57932388 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57932728 57932775 57932728 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57932872 57932940 57932872 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57933678 57933739 57933678 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 CDS 57933841 57933898 57933841 ID=MsG0280009783.01.T01:cds;Parent=MsG0280009783.01.T01
Chr2 three_prime_UTR 57933899 57934223 57933899 ID=MsG0280009783.01.T01:three_prime_utr;Parent=MsG0280009783.01.T01
Gene Sequence

>MsG0280009783.01.T01

ATGGCAACTGTTGTTACTGCTGACATTTCAGCTGATGCCAACAAAATGGACTCAAAACCAAAAGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGCTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCATCTTATTCTCCTAATCATGATCATGGCCGTCAAGGGTTTAATCTCATCACTCCTAACCATTTTCTGGTCAACACTAAGCCTTCTGCTAATGATAATAACCCAAACAATCGAAGGAGGAGAAACAATTTTACCCAAGGGAGGAGAAGGTTGAACGGAAGATCGCTAAAGGCTCAGAGAGAAGATAGCGTTAGAAGAACTGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTAAGTTACGAGTCTTCATTGATAGTTTGGTTAGCATGCTACGTGGAACATTTCTTTTTGTCGTTTACATACATGCTTACTCTTGAGTTTGGTAATCTGAGTTATGAGGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGCTTTGCTTTTGTCGAGTTTGCTGATGAACATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGGGTCCTTCCTTCGAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCGGATGATGAGCGGGAAATGTGTACCAGAACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAGTGAAAAACTTCTTTGAATCATCATGTGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTGTTGCACTAAACTGTAGCGGCATGCTTTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTTGCTCGTCCTGTATCGCGTTAA

Protein sequence

>MsG0280009783.01.T01

MATVVTADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGRQGFNLITPNHFLVNTKPSANDNNPNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVSYESSLIVWLACYVEHFFLSFTYMLTLEFGNLSYEVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMLLGTQPIRVSPSKTPVRPRVARPVSR*