AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040275.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040275.01.T01 MTR_7g087070 94.050 437 25 1 1 437 1 436 0.0 850
MsG0780040275.01.T01 MTR_1g077930 37.045 467 236 9 20 436 32 490 5.81e-111 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040275.01.T01 AT5G17720 47.661 449 204 7 5 436 2 436 7.23e-144 418
MsG0780040275.01.T01 AT5G17780 48.210 419 202 5 23 437 12 419 3.83e-139 405
MsG0780040275.01.T01 AT5G17780 48.210 419 200 6 23 437 12 417 5.57e-138 402
MsG0780040275.01.T01 AT1G64670 36.580 462 237 9 20 434 5 457 4.07e-106 322
MsG0780040275.01.T01 AT1G64670 36.580 462 237 10 20 434 52 504 9.93e-106 323
MsG0780040275.01.T01 AT1G64670 36.580 462 237 9 20 434 60 512 1.17e-105 323
MsG0780040275.01.T01 AT5G41900 35.684 468 241 11 20 434 5 465 1.37e-99 306
MsG0780040275.01.T01 AT4G24140 33.402 488 243 12 22 436 17 495 1.84e-95 296

Find 93 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTGTTGTTGCTCTAAA+TGG 0.105119 7:+75301311 MsG0780040275.01.T01:CDS
TTATGTGTTCTTCCTCATTT+TGG 0.121606 7:+75302187 MsG0780040275.01.T01:CDS
AAGAACATGTTTAGAGAAAT+AGG 0.194094 7:+75301403 MsG0780040275.01.T01:CDS
TACAACTACCATACCTAATA+AGG 0.219558 7:-75301584 None:intergenic
CATCATTAAGTTGAAGTTAA+AGG 0.220250 7:+75303523 MsG0780040275.01.T01:CDS
GTGATCTGCATTTGGAATTA+TGG 0.270007 7:-75303564 None:intergenic
TCATCTGGTTGCACACTCTA+TGG 0.276171 7:+75302386 MsG0780040275.01.T01:CDS
GCTATAGACCTGTTGGGATT+TGG 0.300946 7:+75302267 MsG0780040275.01.T01:CDS
GAAATAGGTTTGCTTCAATT+TGG 0.301537 7:+75301418 MsG0780040275.01.T01:CDS
GTTGTTAAGGAACCCTTATT+AGG 0.320952 7:+75301571 MsG0780040275.01.T01:CDS
ATTATGGTAATTTCAGCATT+TGG 0.326406 7:-75303548 None:intergenic
TATGTCATGGTACGAGCATT+TGG 0.333241 7:+75302993 MsG0780040275.01.T01:CDS
GATGTGAGTCTTGTCTTTCA+TGG 0.339240 7:+75301512 MsG0780040275.01.T01:CDS
AAAGCACTTGAAAAGTTTGC+TGG 0.352230 7:+75302931 MsG0780040275.01.T01:CDS
CAGTGTCATTGCATTGGCTT+TGG 0.359751 7:+75302410 MsG0780040275.01.T01:CDS
ACTTAATGATGCACTCCTTT+GGG 0.362108 7:-75303511 None:intergenic
AACTTAATGATGCACTCCTT+TGG 0.368252 7:-75303512 None:intergenic
TCCTTGTTGTTGCTCTAAAT+GGG 0.383538 7:+75301312 MsG0780040275.01.T01:CDS
GATCACAGCACTGTGCTATT+AGG 0.387386 7:+75303581 MsG0780040275.01.T01:CDS
GGAATTGAATGAAATGAAAT+TGG 0.392886 7:+75303831 MsG0780040275.01.T01:three_prime_UTR
GACTCTTTCCAAATCCCAAC+AGG 0.393861 7:-75302275 None:intergenic
TACAAACAATCTCTTGGCTT+TGG 0.394547 7:-75302297 None:intergenic
GAAGCAATTTGCACAAAGTC+TGG 0.397626 7:+75303610 MsG0780040275.01.T01:CDS
CACAAAGTCTGGAGCATACA+TGG 0.399799 7:+75303621 MsG0780040275.01.T01:CDS
ATGTCATGGTACGAGCATTT+GGG 0.404788 7:+75302994 MsG0780040275.01.T01:CDS
TGTGATTTCTGCAATAGATT+AGG 0.408283 7:-75303029 None:intergenic
AGAGAGGAAGAAGATTCTAA+TGG 0.418267 7:+75301448 MsG0780040275.01.T01:CDS
AAATTCTCATATTTAATCAA+TGG 0.421450 7:-75303659 None:intergenic
AGATTGTTTGTACACTTTGA+AGG 0.424010 7:+75302308 MsG0780040275.01.T01:CDS
CTGGTTCTTCATTTATGTCA+TGG 0.433000 7:+75302980 MsG0780040275.01.T01:CDS
TACCTTGATGAACGCATTGA+TGG 0.450597 7:+75301280 MsG0780040275.01.T01:CDS
GTGGTTCAACCATTGCAGTT+AGG 0.451583 7:+75302357 MsG0780040275.01.T01:CDS
TCTTGTCTTTCATGGGTGAA+TGG 0.458063 7:+75301520 MsG0780040275.01.T01:CDS
CATCTGGTTGCACACTCTAT+GGG 0.468936 7:+75302387 MsG0780040275.01.T01:CDS
AAAGTGTACAAACAATCTCT+TGG 0.469127 7:-75302303 None:intergenic
TTGATTGCTATAGACCTGTT+GGG 0.476348 7:+75302261 MsG0780040275.01.T01:CDS
GTGGAAGGATATTGAAAAGT+TGG 0.483453 7:+75301479 MsG0780040275.01.T01:CDS
TCCATGCATAATGTGATATG+TGG 0.487596 7:+75303398 MsG0780040275.01.T01:CDS
TGAATGAAATGAAATTGGTC+AGG 0.492997 7:+75303836 MsG0780040275.01.T01:three_prime_UTR
ATTGCAGAAATCACAGGATG+TGG 0.498456 7:+75303037 MsG0780040275.01.T01:CDS
TATGGGCAGTGTCATTGCAT+TGG 0.499732 7:+75302404 MsG0780040275.01.T01:CDS
ACTGGACATACTCATCAATC+AGG 0.499834 7:+75303368 MsG0780040275.01.T01:CDS
ACAACTACCATACCTAATAA+GGG 0.502624 7:-75301583 None:intergenic
TTTCAGATAGTTTGTATGAG+AGG 0.502992 7:+75301380 MsG0780040275.01.T01:CDS
TTGAAAAGTTGGTCTGATTG+TGG 0.510895 7:+75301490 MsG0780040275.01.T01:CDS
ATGTGAGTCTTGTCTTTCAT+GGG 0.513620 7:+75301513 MsG0780040275.01.T01:CDS
ATTGATTGCTATAGACCTGT+TGG 0.519702 7:+75302260 MsG0780040275.01.T01:CDS
GACATACTCATCAATCAGGT+TGG 0.522121 7:+75303372 MsG0780040275.01.T01:CDS
TTGTGGCCAATGTTATCAGC+TGG 0.524346 7:+75302961 MsG0780040275.01.T01:CDS
ACAGTGCTGTGATCTGCATT+TGG 0.538453 7:-75303572 None:intergenic
GAAGATTCTAATGGAAAATG+TGG 0.545060 7:+75301457 MsG0780040275.01.T01:CDS
GAAATCACAGGATGTGGGAG+AGG 0.545446 7:+75303043 MsG0780040275.01.T01:CDS
AATAGATTAGGCAAACAGTT+CGG 0.547523 7:-75303017 None:intergenic
CCCCATCAATGCGTTCATCA+AGG 0.550900 7:-75301282 None:intergenic
TGAACAAGCATCATTGTCCT+CGG 0.551638 7:-75302908 None:intergenic
GAGAATGTTATATTCTTGCA+CGG 0.553203 7:+75302162 MsG0780040275.01.T01:CDS
TAAAGTTCATTACTCGCAAG+AGG 0.555328 7:+75303070 MsG0780040275.01.T01:CDS
ATGAATGATGAAGATGATGA+TGG 0.562289 7:+75301355 MsG0780040275.01.T01:CDS
ACCTTGATGAACGCATTGAT+GGG 0.567521 7:+75301281 MsG0780040275.01.T01:CDS
TAATCTATTGCAGAAATCAC+AGG 0.576577 7:+75303031 MsG0780040275.01.T01:CDS
CCCACATATCACATTATGCA+TGG 0.577899 7:-75303399 None:intergenic
ATGGGAGAGACAGAAGAAGA+TGG 0.581802 7:+75301330 MsG0780040275.01.T01:CDS
CTAATGGAAAATGTGGTGGA+AGG 0.582282 7:+75301464 MsG0780040275.01.T01:CDS
CACTGTTTGAGTCCAAAATG+AGG 0.584177 7:-75302199 None:intergenic
AGTTTGCTGGAAAGAAATTG+TGG 0.585913 7:+75302944 MsG0780040275.01.T01:CDS
TTCTTGATAACAGACATGAC+TGG 0.588836 7:+75303350 MsG0780040275.01.T01:CDS
GTTAAAATAAATGTTATACA+AGG 0.593759 7:+75303470 MsG0780040275.01.T01:CDS
GATTCTAATGGAAAATGTGG+TGG 0.594988 7:+75301460 MsG0780040275.01.T01:CDS
TGTCTTTCATGGGTGAATGG+TGG 0.601295 7:+75301523 MsG0780040275.01.T01:CDS
GTACACTTTGAAGGATCATG+TGG 0.607082 7:+75302317 MsG0780040275.01.T01:CDS
TTGTCCTCGGAAGAAGAGTA+CGG 0.609807 7:-75302895 None:intergenic
CATCAAGAAGATCAAAGATG+AGG 0.610753 7:-75301234 None:intergenic
AGGTACTTACAGGTGCAACA+AGG 0.612049 7:-75302467 None:intergenic
GAAGAACCAGCTGATAACAT+TGG 0.613682 7:-75302967 None:intergenic
AATCAATGGAACTTAGCAAG+AGG 0.623576 7:-75303645 None:intergenic
AGCCACTGGTGAAAACTGCA+AGG 0.625095 7:+75302128 MsG0780040275.01.T01:intron
TGAAAACTACCTAACTGCAA+TGG 0.630112 7:-75302366 None:intergenic
TTGCAGAAATCACAGGATGT+GGG 0.630242 7:+75303038 MsG0780040275.01.T01:CDS
GGTACTTACAGGTGCAACAA+GGG 0.633272 7:-75302466 None:intergenic
TAGAGATCAAGTTGTCCCAA+AGG 0.636770 7:+75303496 MsG0780040275.01.T01:CDS
CCATGCATAATGTGATATGT+GGG 0.638365 7:+75303399 MsG0780040275.01.T01:CDS
TGATGAACGCATTGATGGGG+TGG 0.639506 7:+75301285 MsG0780040275.01.T01:CDS
GCCACTGGTGAAAACTGCAA+GGG 0.643644 7:+75302129 MsG0780040275.01.T01:intron
TTTAGAGCAACAACAAGGAG+AGG 0.653335 7:-75301308 None:intergenic
ACACCATGATAAAAGCTGCA+AGG 0.654673 7:+75303864 MsG0780040275.01.T01:three_prime_UTR
ACAAAGTCTGGAGCATACAT+GGG 0.662277 7:+75303622 MsG0780040275.01.T01:CDS
TCCCATTTAGAGCAACAACA+AGG 0.665324 7:-75301313 None:intergenic
GCAGCCGTACTCTTCTTCCG+AGG 0.690073 7:+75302891 MsG0780040275.01.T01:intron
CCTTGATGAACGCATTGATG+GGG 0.701791 7:+75301282 MsG0780040275.01.T01:CDS
AAGAATATAACATTCTCACA+AGG 0.714146 7:-75302156 None:intergenic
CATGCATAATGTGATATGTG+GGG 0.714654 7:+75303400 MsG0780040275.01.T01:CDS
GGAAATGATTGAGAAATCTG+TGG 0.717663 7:+75302338 MsG0780040275.01.T01:CDS
ATGCATAATGTGATATGTGG+GGG 0.727700 7:+75303401 MsG0780040275.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATAAAAAAGAAAATT+AGG - Chr7:75302856-75302875 None:intergenic 10.0%
!! AAATTCTCATATTTAATCAA+TGG - Chr7:75303662-75303681 None:intergenic 15.0%
!! AATAAGCTAAAAAAAGATTA+TGG - Chr7:75301616-75301635 None:intergenic 15.0%
!! GTTAAAATAAATGTTATACA+AGG + Chr7:75303470-75303489 MsG0780040275.01.T01:CDS 15.0%
!!! AAATAGTTTGACTTTATTAT+TGG + Chr7:75301661-75301680 MsG0780040275.01.T01:intron 15.0%
!!! TAAATATGAGAATTTCTTTT+TGG + Chr7:75303667-75303686 MsG0780040275.01.T01:three_prime_UTR 15.0%
!!! TTCTTTTTTATTTCTTCTTA+TGG + Chr7:75302860-75302879 MsG0780040275.01.T01:intron 15.0%
!!! TTGAAAATTTTGACAAAAAA+TGG + Chr7:75303446-75303465 MsG0780040275.01.T01:CDS 15.0%
!!! TTGAATATATAATTTTTGAG+TGG + Chr7:75303810-75303829 MsG0780040275.01.T01:three_prime_UTR 15.0%
!! AAAAAGAAAAGAATCAAACA+AGG - Chr7:75302042-75302061 None:intergenic 20.0%
!! ATTATTGAGTGTAACTATAT+GGG + Chr7:75303202-75303221 MsG0780040275.01.T01:intron 20.0%
!! TATTATTGAGTGTAACTATA+TGG + Chr7:75303201-75303220 MsG0780040275.01.T01:intron 20.0%
!! TTAAATTTGCATCAAACTTA+TGG + Chr7:75302721-75302740 MsG0780040275.01.T01:intron 20.0%
!!! AGAATTTCTTTTTGGTAATT+TGG + Chr7:75303675-75303694 MsG0780040275.01.T01:three_prime_UTR 20.0%
!!! ATTTTTATAACGAAAGACAT+AGG - Chr7:75301948-75301967 None:intergenic 20.0%
!!! TAAACTTCATTTTGTTGTTA+AGG + Chr7:75301558-75301577 MsG0780040275.01.T01:CDS 20.0%
!!! TATGTTTTGATGTTTTTAGT+CGG + Chr7:75302645-75302664 MsG0780040275.01.T01:intron 20.0%
!!! TTTATTTCTTCTTATGGTTT+TGG + Chr7:75302866-75302885 MsG0780040275.01.T01:intron 20.0%
! AAGAACATGTTTAGAGAAAT+AGG + Chr7:75301403-75301422 MsG0780040275.01.T01:CDS 25.0%
! AAGAATATAACATTCTCACA+AGG - Chr7:75302159-75302178 None:intergenic 25.0%
! ATTATGGTAATTTCAGCATT+TGG - Chr7:75303551-75303570 None:intergenic 25.0%
! GGAATTGAATGAAATGAAAT+TGG + Chr7:75303831-75303850 MsG0780040275.01.T01:three_prime_UTR 25.0%
! GGTAATAACCATTTATTGAA+AGG + Chr7:75303091-75303110 MsG0780040275.01.T01:intron 25.0%
!! AATTAGGTGATATTTTCCAA+AGG - Chr7:75302840-75302859 None:intergenic 25.0%
!! CTTTTGTGCTACATATTTTT+TGG + Chr7:75302562-75302581 MsG0780040275.01.T01:intron 25.0%
!! TATTTCTTTTTGCCTTTTTC+AGG + Chr7:75303318-75303337 MsG0780040275.01.T01:intron 25.0%
!! TTGAGTTGTTTATTCAAACA+TGG + Chr7:75301922-75301941 MsG0780040275.01.T01:intron 25.0%
!! TTTACATTTTCAGAGAAACA+TGG - Chr7:75302228-75302247 None:intergenic 25.0%
!!! ATTTCTTTTTGCCTTTTTCA+GGG + Chr7:75303319-75303338 MsG0780040275.01.T01:intron 25.0%
!!! CAATTGTTCATCCATTTTTT+TGG - Chr7:75301175-75301194 None:intergenic 25.0%
!!! CATCATTAAGTTGAAGTTAA+AGG + Chr7:75303523-75303542 MsG0780040275.01.T01:CDS 25.0%
!!! CTTATTTTCATGAACTCTTT+AGG + Chr7:75301630-75301649 MsG0780040275.01.T01:intron 25.0%
!!! GTGATTGATTTTACACAATT+GGG - Chr7:75302447-75302466 None:intergenic 25.0%
!!! TCAAGTTTTAAGAATTGGAA+TGG + Chr7:75302521-75302540 MsG0780040275.01.T01:intron 25.0%
!!! TGCATTCAAGTTTTAAGAAT+TGG + Chr7:75302516-75302535 MsG0780040275.01.T01:intron 25.0%
AAAGTGTACAAACAATCTCT+TGG - Chr7:75302306-75302325 None:intergenic 30.0%
AAGAATCAAACAAGGTTGTT+TGG - Chr7:75302034-75302053 None:intergenic 30.0%
AATAGATTAGGCAAACAGTT+CGG - Chr7:75303020-75303039 None:intergenic 30.0%
AATGCATTCTTAAGTGTAAC+TGG + Chr7:75302075-75302094 MsG0780040275.01.T01:intron 30.0%
ACAACTACCATACCTAATAA+GGG - Chr7:75301586-75301605 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAG+TGG + Chr7:75301697-75301716 MsG0780040275.01.T01:intron 30.0%
AGATTGTTTGTACACTTTGA+AGG + Chr7:75302308-75302327 MsG0780040275.01.T01:CDS 30.0%
ATGAATGATGAAGATGATGA+TGG + Chr7:75301355-75301374 MsG0780040275.01.T01:CDS 30.0%
CAAATTTGACGCAAATTGTA+TGG - Chr7:75302763-75302782 None:intergenic 30.0%
CAATAGAGCCTTTCAATAAA+TGG - Chr7:75303102-75303121 None:intergenic 30.0%
CTTTAACAAGCTCTTCATAA+TGG + Chr7:75301795-75301814 MsG0780040275.01.T01:intron 30.0%
GAAGATTCTAATGGAAAATG+TGG + Chr7:75301457-75301476 MsG0780040275.01.T01:CDS 30.0%
GAGAATGTTATATTCTTGCA+CGG + Chr7:75302162-75302181 MsG0780040275.01.T01:CDS 30.0%
TAATCTATTGCAGAAATCAC+AGG + Chr7:75303031-75303050 MsG0780040275.01.T01:CDS 30.0%
TACAACTACCATACCTAATA+AGG - Chr7:75301587-75301606 None:intergenic 30.0%
TAGCACAAAAGTTTCCAATA+TGG - Chr7:75302553-75302572 None:intergenic 30.0%
TCAATTTGGTAGAAAAAGAG+AGG + Chr7:75301432-75301451 MsG0780040275.01.T01:CDS 30.0%
TGAATGAAATGAAATTGGTC+AGG + Chr7:75303836-75303855 MsG0780040275.01.T01:three_prime_UTR 30.0%
TGTGATTTCTGCAATAGATT+AGG - Chr7:75303032-75303051 None:intergenic 30.0%
! AATTTCTATTTTACAGCCAC+TGG + Chr7:75302114-75302133 MsG0780040275.01.T01:intron 30.0%
! GAAATAGGTTTGCTTCAATT+TGG + Chr7:75301418-75301437 MsG0780040275.01.T01:CDS 30.0%
! TAAGCATTTGTGTTACTGTT+TGG + Chr7:75301722-75301741 MsG0780040275.01.T01:intron 30.0%
! TTATGTGTTCTTCCTCATTT+TGG + Chr7:75302187-75302206 MsG0780040275.01.T01:CDS 30.0%
! TTTCAGATAGTTTGTATGAG+AGG + Chr7:75301380-75301399 MsG0780040275.01.T01:CDS 30.0%
!! GACTTTATTATTGGCTTGTT+TGG + Chr7:75301670-75301689 MsG0780040275.01.T01:intron 30.0%
!! GGTGATTGATTTTACACAAT+TGG - Chr7:75302448-75302467 None:intergenic 30.0%
!! TTTTTGGTAATTTGGAGACA+TGG + Chr7:75303683-75303702 MsG0780040275.01.T01:three_prime_UTR 30.0%
!!! ATTTCTTCTTATGGTTTTGG+TGG + Chr7:75302869-75302888 MsG0780040275.01.T01:intron 30.0%
!!! TGTAACTGGTTTTGATATTG+TGG + Chr7:75302089-75302108 MsG0780040275.01.T01:intron 30.0%
AACTTAATGATGCACTCCTT+TGG - Chr7:75303515-75303534 None:intergenic 35.0%
AATCAATGGAACTTAGCAAG+AGG - Chr7:75303648-75303667 None:intergenic 35.0%
ACTTAATGATGCACTCCTTT+GGG - Chr7:75303514-75303533 None:intergenic 35.0%
ACTTTAGATTCAAGGTGTGT+CGG - Chr7:75303246-75303265 None:intergenic 35.0%
AGAGAGGAAGAAGATTCTAA+TGG + Chr7:75301448-75301467 MsG0780040275.01.T01:CDS 35.0%
ATGCATAATGTGATATGTGG+GGG + Chr7:75303401-75303420 MsG0780040275.01.T01:CDS 35.0%
ATTGATTGCTATAGACCTGT+TGG + Chr7:75302260-75302279 MsG0780040275.01.T01:CDS 35.0%
CATCAAGAAGATCAAAGATG+AGG - Chr7:75301237-75301256 None:intergenic 35.0%
CATGCATAATGTGATATGTG+GGG + Chr7:75303400-75303419 MsG0780040275.01.T01:CDS 35.0%
CCATGCATAATGTGATATGT+GGG + Chr7:75303399-75303418 MsG0780040275.01.T01:CDS 35.0%
CTTGGACTCAAACTAGATAT+TGG + Chr7:75302488-75302507 MsG0780040275.01.T01:intron 35.0%
GAAACTAAGATCCCTGAAAA+AGG - Chr7:75303333-75303352 None:intergenic 35.0%
GAAGTCTCGTATCAAACTTA+TGG - Chr7:75302671-75302690 None:intergenic 35.0%
GACATTGTCATTGTCATATC+CGG - Chr7:75303143-75303162 None:intergenic 35.0%
GATTCTAATGGAAAATGTGG+TGG + Chr7:75301460-75301479 MsG0780040275.01.T01:CDS 35.0%
GGAAATGATTGAGAAATCTG+TGG + Chr7:75302338-75302357 MsG0780040275.01.T01:CDS 35.0%
GTGGAAGGATATTGAAAAGT+TGG + Chr7:75301479-75301498 MsG0780040275.01.T01:CDS 35.0%
GTTGTTAAGGAACCCTTATT+AGG + Chr7:75301571-75301590 MsG0780040275.01.T01:CDS 35.0%
TAAAGTTCATTACTCGCAAG+AGG + Chr7:75303070-75303089 MsG0780040275.01.T01:CDS 35.0%
TAAGGAACCCTTATTAGGTA+TGG + Chr7:75301576-75301595 MsG0780040275.01.T01:intron 35.0%
TACAAACAATCTCTTGGCTT+TGG - Chr7:75302300-75302319 None:intergenic 35.0%
TCCATGCATAATGTGATATG+TGG + Chr7:75303398-75303417 MsG0780040275.01.T01:CDS 35.0%
TGAAAACTACCTAACTGCAA+TGG - Chr7:75302369-75302388 None:intergenic 35.0%
TGGAATGGTATGAACCATAT+TGG + Chr7:75302536-75302555 MsG0780040275.01.T01:intron 35.0%
TTGATTGCTATAGACCTGTT+GGG + Chr7:75302261-75302280 MsG0780040275.01.T01:CDS 35.0%
! AAAGCACTTGAAAAGTTTGC+TGG + Chr7:75302931-75302950 MsG0780040275.01.T01:CDS 35.0%
! ATGTGAGTCTTGTCTTTCAT+GGG + Chr7:75301513-75301532 MsG0780040275.01.T01:CDS 35.0%
! CAATATCTAGTTTGAGTCCA+AGG - Chr7:75302490-75302509 None:intergenic 35.0%
! CTGGTTCTTCATTTATGTCA+TGG + Chr7:75302980-75302999 MsG0780040275.01.T01:CDS 35.0%
! GTGATCTGCATTTGGAATTA+TGG - Chr7:75303567-75303586 None:intergenic 35.0%
! TGTATGGCCTCAATTTTACT+CGG - Chr7:75302747-75302766 None:intergenic 35.0%
! TTCTTGATAACAGACATGAC+TGG + Chr7:75303350-75303369 MsG0780040275.01.T01:CDS 35.0%
! TTGAAAAGTTGGTCTGATTG+TGG + Chr7:75301490-75301509 MsG0780040275.01.T01:CDS 35.0%
!! AGTTTGCTGGAAAGAAATTG+TGG + Chr7:75302944-75302963 MsG0780040275.01.T01:CDS 35.0%
!! TCCTTGTTGTTGCTCTAAAT+GGG + Chr7:75301312-75301331 MsG0780040275.01.T01:CDS 35.0%
ACACCATGATAAAAGCTGCA+AGG + Chr7:75303864-75303883 MsG0780040275.01.T01:three_prime_UTR 40.0%
ACTGGACATACTCATCAATC+AGG + Chr7:75303368-75303387 MsG0780040275.01.T01:CDS 40.0%
ATGTCATGGTACGAGCATTT+GGG + Chr7:75302994-75303013 MsG0780040275.01.T01:CDS 40.0%
ATTGCAGAAATCACAGGATG+TGG + Chr7:75303037-75303056 MsG0780040275.01.T01:CDS 40.0%
CACTGTTTGAGTCCAAAATG+AGG - Chr7:75302202-75302221 None:intergenic 40.0%
CCCACATATCACATTATGCA+TGG - Chr7:75303402-75303421 None:intergenic 40.0%
CTTATGGCCGAGTAAAATTG+AGG + Chr7:75302737-75302756 MsG0780040275.01.T01:intron 40.0%
GAAGAACCAGCTGATAACAT+TGG - Chr7:75302970-75302989 None:intergenic 40.0%
GAAGCAATTTGCACAAAGTC+TGG + Chr7:75303610-75303629 MsG0780040275.01.T01:CDS 40.0%
GACATACTCATCAATCAGGT+TGG + Chr7:75303372-75303391 MsG0780040275.01.T01:CDS 40.0%
GTAAAAGACACAACACACAC+CGG + Chr7:75303121-75303140 MsG0780040275.01.T01:intron 40.0%
TACCTTGATGAACGCATTGA+TGG + Chr7:75301280-75301299 MsG0780040275.01.T01:CDS 40.0%
TATGTCATGGTACGAGCATT+TGG + Chr7:75302993-75303012 MsG0780040275.01.T01:CDS 40.0%
TCAGACACACATTTCACCTT+TGG + Chr7:75302821-75302840 MsG0780040275.01.T01:intron 40.0%
TCTTGTCTTTCATGGGTGAA+TGG + Chr7:75301520-75301539 MsG0780040275.01.T01:CDS 40.0%
TGAACAAGCATCATTGTCCT+CGG - Chr7:75302911-75302930 None:intergenic 40.0%
TTGCAGAAATCACAGGATGT+GGG + Chr7:75303038-75303057 MsG0780040275.01.T01:CDS 40.0%
! ACAAAGTCTGGAGCATACAT+GGG + Chr7:75303622-75303641 MsG0780040275.01.T01:CDS 40.0%
! ACCTTGATGAACGCATTGAT+GGG + Chr7:75301281-75301300 MsG0780040275.01.T01:CDS 40.0%
! CTAATGGAAAATGTGGTGGA+AGG + Chr7:75301464-75301483 MsG0780040275.01.T01:CDS 40.0%
! GATGTGAGTCTTGTCTTTCA+TGG + Chr7:75301512-75301531 MsG0780040275.01.T01:CDS 40.0%
! GCACTGACACTTTAGATTCA+AGG - Chr7:75303254-75303273 None:intergenic 40.0%
! GCAGTTAGGTAGTTTTCATC+TGG + Chr7:75302371-75302390 MsG0780040275.01.T01:CDS 40.0%
! GTACACTTTGAAGGATCATG+TGG + Chr7:75302317-75302336 MsG0780040275.01.T01:CDS 40.0%
! GTTCCTTGCAGCTTTTATCA+TGG - Chr7:75303870-75303889 None:intergenic 40.0%
! TAGAGATCAAGTTGTCCCAA+AGG + Chr7:75303496-75303515 MsG0780040275.01.T01:CDS 40.0%
! TCCCATTTAGAGCAACAACA+AGG - Chr7:75301316-75301335 None:intergenic 40.0%
! TTTAGAGCAACAACAAGGAG+AGG - Chr7:75301311-75301330 None:intergenic 40.0%
! TTTGAGTCCAAGGTACTTAC+AGG - Chr7:75302480-75302499 None:intergenic 40.0%
!! CTCCTTGTTGTTGCTCTAAA+TGG + Chr7:75301311-75301330 MsG0780040275.01.T01:CDS 40.0%
!!! CATCCATTTTTTTGGTGAGC+AGG - Chr7:75301167-75301186 None:intergenic 40.0%
ACAGTGCTGTGATCTGCATT+TGG - Chr7:75303575-75303594 None:intergenic 45.0%
AGGTACTTACAGGTGCAACA+AGG - Chr7:75302470-75302489 None:intergenic 45.0%
AGTGCTAGCATAATGTGAGG+CGG + Chr7:75303269-75303288 MsG0780040275.01.T01:intron 45.0%
ATGGGAGAGACAGAAGAAGA+TGG + Chr7:75301330-75301349 MsG0780040275.01.T01:CDS 45.0%
ATGTGGGGGAGCAAAATTCA+TGG + Chr7:75303415-75303434 MsG0780040275.01.T01:CDS 45.0%
CATCTGGTTGCACACTCTAT+GGG + Chr7:75302387-75302406 MsG0780040275.01.T01:CDS 45.0%
CCTCCTGCTCACCAAAAAAA+TGG + Chr7:75301161-75301180 MsG0780040275.01.T01:CDS 45.0%
GACTCTTTCCAAATCCCAAC+AGG - Chr7:75302278-75302297 None:intergenic 45.0%
GCTATAGACCTGTTGGGATT+TGG + Chr7:75302267-75302286 MsG0780040275.01.T01:CDS 45.0%
GGTACTTACAGGTGCAACAA+GGG - Chr7:75302469-75302488 None:intergenic 45.0%
GTCAGTGCTAGCATAATGTG+AGG + Chr7:75303266-75303285 MsG0780040275.01.T01:intron 45.0%
GTGGTTCAACCATTGCAGTT+AGG + Chr7:75302357-75302376 MsG0780040275.01.T01:CDS 45.0%
TCATCTGGTTGCACACTCTA+TGG + Chr7:75302386-75302405 MsG0780040275.01.T01:CDS 45.0%
TGTCTTTCATGGGTGAATGG+TGG + Chr7:75301523-75301542 MsG0780040275.01.T01:CDS 45.0%
TGTTGCACCTGTAAGTACCT+TGG + Chr7:75302470-75302489 MsG0780040275.01.T01:intron 45.0%
TTGTCCTCGGAAGAAGAGTA+CGG - Chr7:75302898-75302917 None:intergenic 45.0%
TTGTGGCCAATGTTATCAGC+TGG + Chr7:75302961-75302980 MsG0780040275.01.T01:CDS 45.0%
! CACAAAGTCTGGAGCATACA+TGG + Chr7:75303621-75303640 MsG0780040275.01.T01:CDS 45.0%
! CCTTGATGAACGCATTGATG+GGG + Chr7:75301282-75301301 MsG0780040275.01.T01:CDS 45.0%
! GATCACAGCACTGTGCTATT+AGG + Chr7:75303581-75303600 MsG0780040275.01.T01:CDS 45.0%
! TATGGGCAGTGTCATTGCAT+TGG + Chr7:75302404-75302423 MsG0780040275.01.T01:CDS 45.0%
!! CAGTGTCATTGCATTGGCTT+TGG + Chr7:75302410-75302429 MsG0780040275.01.T01:CDS 45.0%
!!! CCATTTTTTTGGTGAGCAGG+AGG - Chr7:75301164-75301183 None:intergenic 45.0%
AGCCACTGGTGAAAACTGCA+AGG + Chr7:75302128-75302147 MsG0780040275.01.T01:intron 50.0%
CCCCATCAATGCGTTCATCA+AGG - Chr7:75301285-75301304 None:intergenic 50.0%
GAAATCACAGGATGTGGGAG+AGG + Chr7:75303043-75303062 MsG0780040275.01.T01:CDS 50.0%
GCCACTGGTGAAAACTGCAA+GGG + Chr7:75302129-75302148 MsG0780040275.01.T01:intron 50.0%
GTGCTAGCATAATGTGAGGC+GGG + Chr7:75303270-75303289 MsG0780040275.01.T01:intron 50.0%
! TCCCTTGCAGTTTTCACCAG+TGG - Chr7:75302133-75302152 None:intergenic 50.0%
! TGATGAACGCATTGATGGGG+TGG + Chr7:75301285-75301304 MsG0780040275.01.T01:CDS 50.0%
GCAGCCGTACTCTTCTTCCG+AGG + Chr7:75302891-75302910 MsG0780040275.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 75301142 75303892 75301142 ID=MsG0780040275.01;Name=MsG0780040275.01
Chr7 mRNA 75301142 75303892 75301142 ID=MsG0780040275.01.T01;Parent=MsG0780040275.01;Name=MsG0780040275.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0.33|0.25|1|1|1|4|237|437
Chr7 exon 75301142 75301592 75301142 ID=MsG0780040275.01.T01:exon:14319;Parent=MsG0780040275.01.T01
Chr7 exon 75302130 75302479 75302130 ID=MsG0780040275.01.T01:exon:14320;Parent=MsG0780040275.01.T01
Chr7 exon 75302895 75303091 75302895 ID=MsG0780040275.01.T01:exon:14321;Parent=MsG0780040275.01.T01
Chr7 exon 75303340 75303892 75303340 ID=MsG0780040275.01.T01:exon:14322;Parent=MsG0780040275.01.T01
Chr7 CDS 75301142 75301592 75301142 ID=MsG0780040275.01.T01:cds;Parent=MsG0780040275.01.T01
Chr7 CDS 75302130 75302479 75302130 ID=MsG0780040275.01.T01:cds;Parent=MsG0780040275.01.T01
Chr7 CDS 75302895 75303091 75302895 ID=MsG0780040275.01.T01:cds;Parent=MsG0780040275.01.T01
Chr7 CDS 75303340 75303655 75303340 ID=MsG0780040275.01.T01:cds;Parent=MsG0780040275.01.T01
Chr7 three_prime_UTR 75303656 75303892 75303656 ID=MsG0780040275.01.T01:three_prime_utr;Parent=MsG0780040275.01.T01
Gene Sequence

>MsG0780040275.01.T01

ATGTCTCTAGCAGTTTCTTCCTCCTGCTCACCAAAAAAATGGATGAACAATTGTATCAGAGTGTTCAACTCAATCATATGTTACATTGTTTTCCTCATCTTTGATCTTCTTGATGCTGTTTTATGTGTTATTTATAGATACCTTGATGAACGCATTGATGGGGTGGCCTCTCCTTGTTGTTGCTCTAAATGGGAGAGACAGAAGAAGATGGTGATGAATGATGAAGATGATGATGGTGTTTCAGATAGTTTGTATGAGAGGAAGAACATGTTTAGAGAAATAGGTTTGCTTCAATTTGGTAGAAAAAGAGAGGAAGAAGATTCTAATGGAAAATGTGGTGGAAGGATATTGAAAAGTTGGTCTGATTGTGGATGTGAGTCTTGTCTTTCATGGGTGAATGGTGGTGTTGATGACTATAAACTTCATTTTGTTGTTAAGGAACCCTTATTAGCCACTGGTGAAAACTGCAAGGGAGAGCCTTGTGAGAATGTTATATTCTTGCACGGATTTATGTGTTCTTCCTCATTTTGGACTCAAACAGTGTTTCCATGTTTCTCTGAAAATGTAAATCATAATTACAGATTGATTGCTATAGACCTGTTGGGATTTGGAAAGAGTCCAAAGCCAAGAGATTGTTTGTACACTTTGAAGGATCATGTGGAAATGATTGAGAAATCTGTGGTTCAACCATTGCAGTTAGGTAGTTTTCATCTGGTTGCACACTCTATGGGCAGTGTCATTGCATTGGCTTTGGCTGCAAAGTATCCCAATTGTGTAAAATCAATCACCCTTGTTGCACCTCCGTACTCTTCTTCCGAGGACAATGATGCTTGTTCAAAAGCACTTGAAAAGTTTGCTGGAAAGAAATTGTGGCCAATGTTATCAGCTGGTTCTTCATTTATGTCATGGTACGAGCATTTGGGCCGAACTGTTTGCCTAATCTATTGCAGAAATCACAGGATGTGGGAGAGGATTCTAAAGTTCATTACTCGCAAGAGGGATCTTAGTTTCTTGATAACAGACATGACTGGACATACTCATCAATCAGGTTGGAATTCCATGCATAATGTGATATGTGGGGGAGCAAAATTCATGGATAGTTACTTGAAAATTTTGACAAAAAATGGAGTTAAAATAAATGTTATACAAGGTGATAGAGATCAAGTTGTCCCAAAGGAGTGCATCATTAAGTTGAAGTTAAAGGCTCCAAATGCTGAAATTACCATAATTCCAAATGCAGATCACAGCACTGTGCTATTAGGCAGAGAGAAGCAATTTGCACAAAGTCTGGAGCATACATGGGCCTCTTGCTAA
Protein sequence

>MsG0780040275.01.T01

MSLAVSSSCSPKKWMNNCIRVFNSIICYIVFLIFDLLDAVLCVIYRYLDERIDGVASPCCCSKWERQKKMVMNDEDDDGVSDSLYERKNMFREIGLLQFGRKREEEDSNGKCGGRILKSWSDCGCESCLSWVNGGVDDYKLHFVVKEPLLATGENCKGEPCENVIFLHGFMCSSSFWTQTVFPCFSENVNHNYRLIAIDLLGFGKSPKPRDCLYTLKDHVEMIEKSVVQPLQLGSFHLVAHSMGSVIALALAAKYPNCVKSITLVAPPYSSSEDNDACSKALEKFAGKKLWPMLSAGSSFMSWYEHLGRTVCLIYCRNHRMWERILKFITRKRDLSFLITDMTGHTHQSGWNSMHNVICGGAKFMDSYLKILTKNGVKINVIQGDRDQVVPKECIIKLKLKAPNAEITIIPNADHSTVLLGREKQFAQSLEHTWASC*