AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028853.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028853.01.T02 MTR_5g076620 98.848 434 5 0 1 434 1 434 0.0 886
MsG0580028853.01.T02 MTR_5g076620 98.681 379 5 0 1 379 1 379 0.0 775
MsG0580028853.01.T02 MTR_3g450510 73.950 357 84 2 77 429 37 388 0.0 544
MsG0580028853.01.T02 MTR_5g090780 73.988 346 81 3 87 429 42 381 0.0 531
MsG0580028853.01.T02 MTR_3g083630 67.905 296 94 1 138 433 86 380 2.07e-154 442
MsG0580028853.01.T02 MTR_3g083650 60.563 71 28 0 165 235 1 71 2.27e-26 101
MsG0580028853.01.T01 MTR_5g076620 98.848 434 5 0 1 434 1 434 0.0 886
MsG0580028853.01.T01 MTR_5g076620 98.681 379 5 0 1 379 1 379 0.0 775
MsG0580028853.01.T01 MTR_3g450510 73.950 357 84 2 77 429 37 388 0.0 544
MsG0580028853.01.T01 MTR_5g090780 73.988 346 81 3 87 429 42 381 0.0 531
MsG0580028853.01.T01 MTR_3g083630 67.905 296 94 1 138 433 86 380 2.07e-154 442
MsG0580028853.01.T01 MTR_3g083650 60.563 71 28 0 165 235 1 71 2.27e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028853.01.T02 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 595
MsG0580028853.01.T02 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 595
MsG0580028853.01.T02 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 595
MsG0580028853.01.T02 AT5G17230 66.966 445 112 7 2 428 4 431 0.0 585
MsG0580028853.01.T01 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 595
MsG0580028853.01.T01 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 595
MsG0580028853.01.T01 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 595
MsG0580028853.01.T01 AT5G17230 66.966 445 112 7 2 428 4 431 0.0 585

Find 13 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATAAGTTCTTAATTTAA+AGG 0.125341 5:-87599554 MsG0580028853.01.T01:intron
ACAACTTTGTTGGGTGTTAA+TGG 0.181131 5:+87599669 None:intergenic
CTGTTGAAATTCTTTGTATA+TGG 0.282950 5:+87599949 None:intergenic
CACTAAATTCTCCACTCTTC+TGG 0.297134 5:+87599837 None:intergenic
CAGAAGAGTGGAGAATTTAG+TGG 0.427449 5:-87599836 MsG0580028853.01.T01:five_prime_UTR
TTTGAAGCTTGACCAATGTA+TGG 0.490072 5:+87599973 None:intergenic
AGTGGGTCATATTATTCATG+AGG 0.576517 5:-87599818 MsG0580028853.01.T01:intron
ACAAGCAAACTCCAGAAGAG+TGG 0.625192 5:-87599848 MsG0580028853.01.T01:five_prime_UTR
AGAAGAGTGGAGAATTTAGT+GGG 0.630546 5:-87599835 MsG0580028853.01.T01:five_prime_UTR
TGGAACTCACAACCATACAT+TGG 0.648155 5:-87599985 MsG0580028853.01.T01:five_prime_UTR
AACTTGATAACACAATCGTG+TGG 0.658339 5:-87600005 MsG0580028853.01.T01:five_prime_UTR
AGTAGTAGTAACATGAAACA+AGG 0.660496 5:+87599626 None:intergenic
TTAGTACTGACAAAGCTACA+CGG 0.669437 5:+87599573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTGTTAAATTTTCAA+GGG - Chr5:87597850-87597869 MsG0580028853.01.T01:intron 10.0%
!! AATCTATGTAAAAAAAACTT+AGG + Chr5:87599121-87599140 None:intergenic 15.0%
!! ATACATATATGTTCAATTAA+TGG - Chr5:87596315-87596334 MsG0580028853.01.T01:intron 15.0%
!! CTAATAAGTTCTTAATTTAA+AGG - Chr5:87596487-87596506 MsG0580028853.01.T01:intron 15.0%
!! GATATAGTTATTTAGAAAAA+TGG - Chr5:87599917-87599936 MsG0580028853.01.T01:five_prime_UTR 15.0%
!! TAAAAAAATCGAAATTACAT+TGG + Chr5:87596606-87596625 None:intergenic 15.0%
!! TAGATTAAGAAATATAATGT+TGG - Chr5:87599135-87599154 MsG0580028853.01.T01:intron 15.0%
!! TTTCATGTATATATCTAATT+TGG + Chr5:87598432-87598451 None:intergenic 15.0%
!!! AAATTGATCTTTATTTATGT+AGG + Chr5:87598132-87598151 None:intergenic 15.0%
!!! ATTTTGTATATGATGAAATA+AGG - Chr5:87599971-87599990 MsG0580028853.01.T01:five_prime_UTR 15.0%
!!! GATTATGATAACAAATATTT+TGG - Chr5:87597788-87597807 MsG0580028853.01.T01:CDS 15.0%
!!! GTAAATTTGTTAAATTTTCA+AGG - Chr5:87597849-87597868 MsG0580028853.01.T01:intron 15.0%
!! AATAATAGTCAATAGTTATC+TGG + Chr5:87597817-87597836 None:intergenic 20.0%
!! AATTTAACAAATTTACATGC+AGG + Chr5:87597845-87597864 None:intergenic 20.0%
!! ATTTCATCATATACAAAATG+TGG + Chr5:87599970-87599989 None:intergenic 20.0%
!! GAGTTGAGTAAATTTATATT+GGG - Chr5:87597668-87597687 MsG0580028853.01.T01:CDS 20.0%
!! TAATAATGACAAACACAAAA+AGG - Chr5:87599940-87599959 MsG0580028853.01.T01:five_prime_UTR 20.0%
!! TTATATCTGAGGAAAAAAAA+TGG - Chr5:87598642-87598661 MsG0580028853.01.T01:CDS 20.0%
!! TTCTTATAGACAACAAAAAT+TGG - Chr5:87598023-87598042 MsG0580028853.01.T01:intron 20.0%
!!! AGAATCATGGTTTTAAATTA+CGG + Chr5:87596801-87596820 None:intergenic 20.0%
!!! ATATGCTAAAACATTTTACT+TGG - Chr5:87597585-87597604 MsG0580028853.01.T01:intron 20.0%
!!! ATTTTAGTATGTAACACAAA+AGG - Chr5:87599699-87599718 MsG0580028853.01.T01:intron 20.0%
!!! TAAATTACCAATCTTTTTAG+TGG - Chr5:87596255-87596274 MsG0580028853.01.T01:CDS 20.0%
!!! TATGCTAAAACATTTTACTT+GGG - Chr5:87597586-87597605 MsG0580028853.01.T01:intron 20.0%
!!! TCCATTTTATTCTACAAAAA+GGG - Chr5:87596119-87596138 MsG0580028853.01.T01:three_prime_UTR 20.0%
!!! TGAAATTTTATTGTTTGTGT+TGG - Chr5:87596892-87596911 MsG0580028853.01.T01:intron 20.0%
!!! TGAGTTGAGTAAATTTATAT+TGG - Chr5:87597667-87597686 MsG0580028853.01.T01:CDS 20.0%
!!! TTCCATTTTATTCTACAAAA+AGG - Chr5:87596118-87596137 MsG0580028853.01.T01:three_prime_UTR 20.0%
!!! TTTGAAATAACTTACATACA+TGG - Chr5:87597955-87597974 MsG0580028853.01.T01:intron 20.0%
!!! TTTGTCATGGTTTTAAATTA+CGG - Chr5:87596662-87596681 MsG0580028853.01.T01:CDS 20.0%
!!! TTTTAGTATGTAACACAAAA+GGG - Chr5:87599700-87599719 MsG0580028853.01.T01:intron 20.0%
!!! TTTTGTAGAATAAAATGGAA+TGG + Chr5:87596118-87596137 None:intergenic 20.0%
! AAATTAACATCCTCACTTTA+AGG + Chr5:87597631-87597650 None:intergenic 25.0%
! AATGGCAAATTCATATAAGT+GGG - Chr5:87596333-87596352 MsG0580028853.01.T01:intron 25.0%
! AGAATGATAAGAAAAAGACA+CGG - Chr5:87597272-87597291 MsG0580028853.01.T01:intron 25.0%
! ATCGACAAAAACAAAAGATT+AGG + Chr5:87598774-87598793 None:intergenic 25.0%
! ATTACAACAATTTCACTAAG+AGG - Chr5:87599795-87599814 MsG0580028853.01.T01:intron 25.0%
! ATTATACAAAACCTTCTTTG+TGG - Chr5:87599456-87599475 MsG0580028853.01.T01:intron 25.0%
! CCATTTAAAGATATGATAGA+AGG - Chr5:87598798-87598817 MsG0580028853.01.T01:CDS 25.0%
! CCTTCTATCATATCTTTAAA+TGG + Chr5:87598801-87598820 None:intergenic 25.0%
! CTGTTGAAATTCTTTGTATA+TGG + Chr5:87596095-87596114 None:intergenic 25.0%
! CTTTAATCCAATAAAATCCT+AGG + Chr5:87596956-87596975 None:intergenic 25.0%
! GAACAAAATTAATCAATACC+TGG + Chr5:87598408-87598427 None:intergenic 25.0%
! GGAAAATTGAGAATATGATA+AGG + Chr5:87599215-87599234 None:intergenic 25.0%
! GTAGAAAACAACATTAATGA+TGG + Chr5:87598456-87598475 None:intergenic 25.0%
! GTATATTTGACATCTGATTA+GGG + Chr5:87598155-87598174 None:intergenic 25.0%
! TAATGGCAAATTCATATAAG+TGG - Chr5:87596332-87596351 MsG0580028853.01.T01:intron 25.0%
! TATATGTAAGTGTGTATAGA+TGG - Chr5:87599504-87599523 MsG0580028853.01.T01:intron 25.0%
! TATTATCTTTCCTTAAAGTG+AGG - Chr5:87597618-87597637 MsG0580028853.01.T01:intron 25.0%
! TCCACAAAATCATTATATGT+GGG + Chr5:87598551-87598570 None:intergenic 25.0%
! TGTATATTTGACATCTGATT+AGG + Chr5:87598156-87598175 None:intergenic 25.0%
! TTACAACAATTTCACTAAGA+GGG - Chr5:87599796-87599815 MsG0580028853.01.T01:intron 25.0%
! TTCCACAAAATCATTATATG+TGG + Chr5:87598552-87598571 None:intergenic 25.0%
!! ACCCTTTTTGTAGAATAAAA+TGG + Chr5:87596123-87596142 None:intergenic 25.0%
!! CAATATTGACTACAAATTAG+TGG + Chr5:87600011-87600030 None:intergenic 25.0%
!! CACTAATTTGTAGTCAATAT+TGG - Chr5:87600009-87600028 MsG0580028853.01.T01:five_prime_UTR 25.0%
!! CCACAATATAAAAGATTTTG+AGG + Chr5:87596777-87596796 None:intergenic 25.0%
!! CCTCAAAATCTTTTATATTG+TGG - Chr5:87596774-87596793 MsG0580028853.01.T01:CDS 25.0%
!! CCTCTAAACTTTAGAAAATA+GGG - Chr5:87598191-87598210 MsG0580028853.01.T01:intron 25.0%
!! TCCTCTAAACTTTAGAAAAT+AGG - Chr5:87598190-87598209 MsG0580028853.01.T01:intron 25.0%
!! TTTTTCTAATGACACATGTT+CGG + Chr5:87598689-87598708 None:intergenic 25.0%
!!! ACATGAGATAACTTTTTTGA+TGG + Chr5:87599887-87599906 None:intergenic 25.0%
!!! AGAGTTTAATGGTTTTTTCA+AGG - Chr5:87597031-87597050 MsG0580028853.01.T01:CDS 25.0%
!!! AGGTTTTGTATAATGATGTT+TGG + Chr5:87599450-87599469 None:intergenic 25.0%
!!! AGTGAGGATGTTAATTTTTT+CGG - Chr5:87597634-87597653 MsG0580028853.01.T01:intron 25.0%
!!! AGTTGATTTGAATTTCATTG+AGG - Chr5:87599644-87599663 MsG0580028853.01.T01:intron 25.0%
!!! TGTTAATTTTTTCGGTTTTG+TGG - Chr5:87597642-87597661 MsG0580028853.01.T01:intron 25.0%
!!! TTTTCAAGGATTCATATTTG+AGG - Chr5:87597045-87597064 MsG0580028853.01.T01:CDS 25.0%
AAAATGAACTTAGCACATGA+CGG + Chr5:87598089-87598108 None:intergenic 30.0%
AATGGTTTACTCGATTCTTT+CGG - Chr5:87597184-87597203 MsG0580028853.01.T01:CDS 30.0%
ACTTAGGACGAAAGTTATTA+TGG + Chr5:87599105-87599124 None:intergenic 30.0%
AGGATTCATATTTGAGGAAT+AGG - Chr5:87597051-87597070 MsG0580028853.01.T01:CDS 30.0%
AGTAGTAGTAACATGAAACA+AGG + Chr5:87596418-87596437 None:intergenic 30.0%
ATGACAAAAAACACACAATG+GGG + Chr5:87596650-87596669 None:intergenic 30.0%
ATTCATATTTGAGGAATAGG+AGG - Chr5:87597054-87597073 MsG0580028853.01.T01:CDS 30.0%
CACACAAAAACAACTTTGTT+GGG + Chr5:87596384-87596403 None:intergenic 30.0%
CATGAAGAGCCAAATTAAAA+GGG - Chr5:87599346-87599365 MsG0580028853.01.T01:intron 30.0%
CATGACAAAAAACACACAAT+GGG + Chr5:87596651-87596670 None:intergenic 30.0%
CATGTCTGTGACAATATTAA+GGG - Chr5:87597126-87597145 MsG0580028853.01.T01:CDS 30.0%
CCACAAAATCATTATATGTG+GGG + Chr5:87598550-87598569 None:intergenic 30.0%
CTTCTATTTCGTCCAATATT+TGG + Chr5:87599769-87599788 None:intergenic 30.0%
GAAATGAAGTGAACAAACAT+CGG + Chr5:87599052-87599071 None:intergenic 30.0%
GCTATTATATCGCCAAATAT+TGG - Chr5:87599754-87599773 MsG0580028853.01.T01:intron 30.0%
GTATGAAAACATCAACATCA+TGG + Chr5:87596299-87596318 None:intergenic 30.0%
TAAAGCAAGTTTCTTTGCAT+TGG - Chr5:87596971-87596990 MsG0580028853.01.T01:intron 30.0%
TATCTGAGGAAAAAAAATGG+CGG - Chr5:87598645-87598664 MsG0580028853.01.T01:CDS 30.0%
TATGATAGAAGGAATGAGAA+TGG - Chr5:87598809-87598828 MsG0580028853.01.T01:CDS 30.0%
TCAAACTCTTACTATTGAGT+TGG - Chr5:87599675-87599694 MsG0580028853.01.T01:intron 30.0%
TCATCATACAACAAGAATCA+TGG + Chr5:87596814-87596833 None:intergenic 30.0%
TCATGAAGAGCCAAATTAAA+AGG - Chr5:87599345-87599364 MsG0580028853.01.T01:intron 30.0%
TCATGTCTGTGACAATATTA+AGG - Chr5:87597125-87597144 MsG0580028853.01.T01:CDS 30.0%
TGCAAAGAACATTATATCTG+AGG - Chr5:87598631-87598650 MsG0580028853.01.T01:CDS 30.0%
TGGTAAAGAAAGTAACTTCT+TGG + Chr5:87599837-87599856 None:intergenic 30.0%
TGTTTGATAAGTTCATCTAC+TGG - Chr5:87597879-87597898 MsG0580028853.01.T01:intron 30.0%
TGTTTGGTTGAATTTCTTAC+CGG + Chr5:87599434-87599453 None:intergenic 30.0%
TTTCTACGAAGAGAGTTTAA+TGG - Chr5:87597020-87597039 MsG0580028853.01.T01:intron 30.0%
! ATTGTTTAGTTTAGCAACAG+AGG + Chr5:87599166-87599185 None:intergenic 30.0%
! CTGTAATATGTGAAGCATTA+GGG + Chr5:87598273-87598292 None:intergenic 30.0%
! GTGTTTTCCTAGGATTTTAT+TGG - Chr5:87596946-87596965 MsG0580028853.01.T01:intron 30.0%
!! GACTAAACTTTTGTTGTGTT+AGG + Chr5:87597107-87597126 None:intergenic 30.0%
!! GTTATCAAGTTTTGTAGCTA+TGG + Chr5:87596027-87596046 None:intergenic 30.0%
!!! CCCTATTTTCTAAAGTTTAG+AGG + Chr5:87598194-87598213 None:intergenic 30.0%
!!! TGAGATAACTTTTTTGATGG+AGG + Chr5:87599884-87599903 None:intergenic 30.0%
!!! TTTTTTGATGAGGCAGAAAA+GGG - Chr5:87599377-87599396 MsG0580028853.01.T01:intron 30.0%
AACTTGTAGCCAATTCCATT+TGG - Chr5:87598051-87598070 MsG0580028853.01.T01:intron 35.0%
ACAACTTTGTTGGGTGTTAA+TGG + Chr5:87596375-87596394 None:intergenic 35.0%
ACAATGGCCACTAAAAAGAT+TGG + Chr5:87596265-87596284 None:intergenic 35.0%
ACATATTACAGCAACTGCAA+TGG - Chr5:87598282-87598301 MsG0580028853.01.T01:intron 35.0%
ACTTGCATATGCTAGATCTA+TGG - Chr5:87599856-87599875 MsG0580028853.01.T01:five_prime_UTR 35.0%
AGAAGAGTGGAGAATTTAGT+GGG - Chr5:87596206-87596225 MsG0580028853.01.T01:CDS 35.0%
AGAGCTATTTGGGCTATATA+TGG - Chr5:87597734-87597753 MsG0580028853.01.T01:CDS 35.0%
AGTGAAGCATATGATAGATG+TGG - Chr5:87597547-87597566 MsG0580028853.01.T01:intron 35.0%
AGTGGGTCATATTATTCATG+AGG - Chr5:87596223-87596242 MsG0580028853.01.T01:CDS 35.0%
ATAGATCTAGCATATGCAAG+TGG + Chr5:87599857-87599876 None:intergenic 35.0%
ATCAACAGGAAATCTGTTGA+CGG + Chr5:87598383-87598402 None:intergenic 35.0%
ATCAATACCTGGATATCAAC+AGG + Chr5:87598397-87598416 None:intergenic 35.0%
ATCTGAGGAAAAAAAATGGC+GGG - Chr5:87598646-87598665 MsG0580028853.01.T01:CDS 35.0%
ATGGTTTACTCGATTCTTTC+GGG - Chr5:87597185-87597204 MsG0580028853.01.T01:CDS 35.0%
CATGGAGCAAAAACTAACAA+TGG + Chr5:87596281-87596300 None:intergenic 35.0%
CCATGACAAAAAACACACAA+TGG + Chr5:87596652-87596671 None:intergenic 35.0%
GAAAGAATCGAGTAAACCAT+TGG + Chr5:87597185-87597204 None:intergenic 35.0%
GATAAATCCTCTAACACTGA+AGG + Chr5:87598752-87598771 None:intergenic 35.0%
GATATTAAGTATGCGTGTGT+TGG - Chr5:87597316-87597335 MsG0580028853.01.T01:intron 35.0%
GCACACAAAAACAACTTTGT+TGG + Chr5:87596385-87596404 None:intergenic 35.0%
GTATCTACCACAAGATGAAT+TGG - Chr5:87599259-87599278 MsG0580028853.01.T01:intron 35.0%
TCATTATATGTGGGGACAAA+AGG + Chr5:87598542-87598561 None:intergenic 35.0%
TGAAAGTTGAAAGCAACAAG+TGG - Chr5:87598477-87598496 MsG0580028853.01.T01:CDS 35.0%
! AACTTGATAACACAATCGTG+TGG - Chr5:87596036-87596055 MsG0580028853.01.T01:three_prime_UTR 35.0%
! AATGACCCTGCATTTGATTT+CGG - Chr5:87599183-87599202 MsG0580028853.01.T01:intron 35.0%
! ATATTGGGTTCTTTTCTCTC+AGG - Chr5:87597683-87597702 MsG0580028853.01.T01:CDS 35.0%
! CCCCACATATAATGATTTTG+TGG - Chr5:87598547-87598566 MsG0580028853.01.T01:CDS 35.0%
! GCTGTAATATGTGAAGCATT+AGG + Chr5:87598274-87598293 None:intergenic 35.0%
! GTTAAGGTTAGCTAACAAAG+AGG - Chr5:87597079-87597098 MsG0580028853.01.T01:CDS 35.0%
! GTTTGCTTGTGTTTTCAACT+GGG - Chr5:87596993-87597012 MsG0580028853.01.T01:intron 35.0%
! TTTGAAGCTTGACCAATGTA+TGG + Chr5:87596071-87596090 None:intergenic 35.0%
!! TAGCTGATTTGCAATTCCTA+AGG + Chr5:87598985-87599004 None:intergenic 35.0%
!! TGTTGGTTTAATGAGTGTTC+CGG - Chr5:87598899-87598918 MsG0580028853.01.T01:CDS 35.0%
!! TTAATCACAGTTAGCTTTGC+TGG - Chr5:87596916-87596935 MsG0580028853.01.T01:intron 35.0%
!! TTAGTACTGACAAAGCTACA+CGG + Chr5:87596471-87596490 None:intergenic 35.0%
!!! CCATTGTGTGTTTTTTGTCA+TGG - Chr5:87596649-87596668 MsG0580028853.01.T01:CDS 35.0%
!!! GTTTTTTGATGAGGCAGAAA+AGG - Chr5:87599376-87599395 MsG0580028853.01.T01:intron 35.0%
!!! TGTAACACAAAAGGGTGTTT+TGG - Chr5:87599708-87599727 MsG0580028853.01.T01:intron 35.0%
ACCAACATACTCAGAGATGT+TGG - Chr5:87599005-87599024 MsG0580028853.01.T01:five_prime_UTR 40.0%
ATCGAGTAAACCATTGGAAC+AGG + Chr5:87597179-87597198 None:intergenic 40.0%
ATGAAGCCGAAATCAAATGC+AGG + Chr5:87599192-87599211 None:intergenic 40.0%
ATTGTACACACTCTCTGTTG+TGG + Chr5:87598952-87598971 None:intergenic 40.0%
ATTTGCAATTCCTAAGGCCA+AGG + Chr5:87598979-87598998 None:intergenic 40.0%
CACTAAATTCTCCACTCTTC+TGG + Chr5:87596207-87596226 None:intergenic 40.0%
CAGAAGAGTGGAGAATTTAG+TGG - Chr5:87596205-87596224 MsG0580028853.01.T01:CDS 40.0%
CAGATTTCCTGTTGATATCC+AGG - Chr5:87598387-87598406 MsG0580028853.01.T01:intron 40.0%
CGAGCACATTCGATAACAAA+GGG + Chr5:87597372-87597391 None:intergenic 40.0%
CTCAACAAACTCAAATTCCC+AGG + Chr5:87597529-87597548 None:intergenic 40.0%
CTCTACTGTTACTATGTTGC+TGG - Chr5:87598873-87598892 MsG0580028853.01.T01:CDS 40.0%
GAAAACTTCAGCCACAAAGA+AGG + Chr5:87599470-87599489 None:intergenic 40.0%
GCAGCATCAAGCATATCAAA+TGG + Chr5:87598349-87598368 None:intergenic 40.0%
GGTGAGTGATCATGCTTATA+TGG - Chr5:87597755-87597774 MsG0580028853.01.T01:CDS 40.0%
TACTATGTTGCTGGAACTGT+TGG - Chr5:87598882-87598901 MsG0580028853.01.T01:CDS 40.0%
TCAGATGACGACATATTTGC+CGG - Chr5:87599296-87599315 MsG0580028853.01.T01:intron 40.0%
TCCAACATCTCTGAGTATGT+TGG + Chr5:87599009-87599028 None:intergenic 40.0%
TGAAGCCGAAATCAAATGCA+GGG + Chr5:87599191-87599210 None:intergenic 40.0%
TGAGCAGAAGGTTTATGATG+TGG - Chr5:87597426-87597445 MsG0580028853.01.T01:intron 40.0%
TGAGGAATAGGAGGAAGTTA+AGG - Chr5:87597063-87597082 MsG0580028853.01.T01:CDS 40.0%
TGCTGATGTTGTCGAAATTG+TGG - Chr5:87596725-87596744 MsG0580028853.01.T01:CDS 40.0%
TGGAACTCACAACCATACAT+TGG - Chr5:87596056-87596075 MsG0580028853.01.T01:three_prime_UTR 40.0%
TGGTTTACTCGATTCTTTCG+GGG - Chr5:87597186-87597205 MsG0580028853.01.T01:CDS 40.0%
TTAATGAGTGTTCCGGTCAT+GGG - Chr5:87598906-87598925 MsG0580028853.01.T01:CDS 40.0%
TTACAGCAACTGCAATGGAT+AGG - Chr5:87598287-87598306 MsG0580028853.01.T01:intron 40.0%
TTCCCAGGCAAAACAATTTC+CGG + Chr5:87597514-87597533 None:intergenic 40.0%
TTTAATGAGTGTTCCGGTCA+TGG - Chr5:87598905-87598924 MsG0580028853.01.T01:CDS 40.0%
! AGATTGGACGAACTTTTCCA+AGG - Chr5:87598319-87598338 MsG0580028853.01.T01:CDS 40.0%
! ATACTACTGCCTTTTCAGTG+TGG - Chr5:87598218-87598237 MsG0580028853.01.T01:intron 40.0%
! GATTGGACGAACTTTTCCAA+GGG - Chr5:87598320-87598339 MsG0580028853.01.T01:CDS 40.0%
! TGGAAAAGTGGTGTTTTCCT+AGG - Chr5:87596936-87596955 MsG0580028853.01.T01:intron 40.0%
!! AAACCGGAAATTGTTTTGCC+TGG - Chr5:87597508-87597527 MsG0580028853.01.T01:intron 40.0%
!! AACCGGAAATTGTTTTGCCT+GGG - Chr5:87597509-87597528 MsG0580028853.01.T01:intron 40.0%
!! ACGTTCTCGCCCTTTTAATT+TGG + Chr5:87599358-87599377 None:intergenic 40.0%
!! AGTTAGCTTTGCTGGAAAAG+TGG - Chr5:87596924-87596943 MsG0580028853.01.T01:intron 40.0%
!! CTACTACTTGCTCGTTTTTG+TGG - Chr5:87596433-87596452 MsG0580028853.01.T01:intron 40.0%
!! GGTTTGCTTGTGTTTTCAAC+TGG - Chr5:87596992-87597011 MsG0580028853.01.T01:intron 40.0%
!! TTATGATGTGGTTCTGAAGC+AGG - Chr5:87597438-87597457 MsG0580028853.01.T01:intron 40.0%
!!! AGATTTTGAGGTCTCAGCAA+TGG + Chr5:87596765-87596784 None:intergenic 40.0%
ACAAGCAAACTCCAGAAGAG+TGG - Chr5:87596193-87596212 MsG0580028853.01.T01:CDS 45.0%
AGCAACTGCAATGGATAGGT+GGG - Chr5:87598291-87598310 MsG0580028853.01.T01:intron 45.0%
AGCTCAATGAACAGAGCAGA+TGG - Chr5:87599408-87599427 MsG0580028853.01.T01:intron 45.0%
ATGTTCGCCTTCAGTGTTAG+AGG - Chr5:87598742-87598761 MsG0580028853.01.T01:CDS 45.0%
CAAATAGCTCTTCGCCTTTC+GGG + Chr5:87597725-87597744 None:intergenic 45.0%
CATACTCAGAGATGTTGGAG+AGG - Chr5:87599010-87599029 MsG0580028853.01.T01:five_prime_UTR 45.0%
CCAAATAGCTCTTCGCCTTT+CGG + Chr5:87597726-87597745 None:intergenic 45.0%
CGAAAGGCGAAGAGCTATTT+GGG - Chr5:87597724-87597743 MsG0580028853.01.T01:CDS 45.0%
CGGTGAACTTGAAGTGAAAC+CGG - Chr5:87597492-87597511 MsG0580028853.01.T01:intron 45.0%
CTCTTCTAATGACTCCCGAA+AGG - Chr5:87597708-87597727 MsG0580028853.01.T01:CDS 45.0%
GAACTTAGCACATGACGGTA+TGG + Chr5:87598084-87598103 None:intergenic 45.0%
GCGAGCACATTCGATAACAA+AGG + Chr5:87597373-87597392 None:intergenic 45.0%
GGATAGGTGGGAATCAAGAT+TGG - Chr5:87598303-87598322 MsG0580028853.01.T01:intron 45.0%
GGCGCATAACCAAATGGAAT+TGG + Chr5:87598063-87598082 None:intergenic 45.0%
TGACGACATATTTGCCGGTA+AGG - Chr5:87599301-87599320 MsG0580028853.01.T01:intron 45.0%
TTACTAGCACTCTCTAAGCC+AGG + Chr5:87597346-87597365 None:intergenic 45.0%
TTAGAGGTCTCCTGTTCCAA+TGG - Chr5:87597166-87597185 MsG0580028853.01.T01:CDS 45.0%
! ACCACAAGATGAATTGGCTC+TGG - Chr5:87599265-87599284 MsG0580028853.01.T01:intron 45.0%
! CGGTTTCACTTCAAGTTCAC+CGG + Chr5:87597494-87597513 None:intergenic 45.0%
! TCAATTTTCCTGACAGTGCC+AGG - Chr5:87599225-87599244 MsG0580028853.01.T01:intron 45.0%
!! AAGATGAATTGGCTCTGGCA+GGG - Chr5:87599270-87599289 MsG0580028853.01.T01:intron 45.0%
!! AGGACGGATGAACTTGTTGA+TGG - Chr5:87598247-87598266 MsG0580028853.01.T01:intron 45.0%
!! GTTTTGGATGTTGCAGGTGT+GGG - Chr5:87599724-87599743 MsG0580028853.01.T01:intron 45.0%
!! TGTTTTGGATGTTGCAGGTG+TGG - Chr5:87599723-87599742 MsG0580028853.01.T01:intron 45.0%
!!! AAGGGTGTTTTGGATGTTGC+AGG - Chr5:87599718-87599737 MsG0580028853.01.T01:intron 45.0%
!!! GGCGAGAACGTTTTTTGATG+AGG - Chr5:87599367-87599386 MsG0580028853.01.T01:intron 45.0%
AAGAGGAAGCTGAGCTCTAC+CGG - Chr5:87597472-87597491 MsG0580028853.01.T01:intron 50.0%
AGCAGGCGTCTTTGGTTAAG+AGG - Chr5:87597455-87597474 MsG0580028853.01.T01:intron 50.0%
CAATGAACAGAGCAGATGGC+CGG - Chr5:87599412-87599431 MsG0580028853.01.T01:intron 50.0%
CAGCAACTGCAATGGATAGG+TGG - Chr5:87598290-87598309 MsG0580028853.01.T01:intron 50.0%
CCACTTGTCTGTCACCTTAC+CGG + Chr5:87599318-87599337 None:intergenic 50.0%
CCGAAAGGCGAAGAGCTATT+TGG - Chr5:87597723-87597742 MsG0580028853.01.T01:CDS 50.0%
CCTCCTACACCACACTGAAA+AGG + Chr5:87598230-87598249 None:intergenic 50.0%
CGGTATGGCGCATAACCAAA+TGG + Chr5:87598069-87598088 None:intergenic 50.0%
GAACAGGAGACCTCTAAGCT+AGG + Chr5:87597163-87597182 None:intergenic 50.0%
GAGTGTGTACAATGCTGCCT+TGG - Chr5:87598959-87598978 MsG0580028853.01.T01:five_prime_UTR 50.0%
GCATATCAAATGGACGCCCT+TGG + Chr5:87598339-87598358 None:intergenic 50.0%
GCCAGAGCCAATTCATCTTG+TGG + Chr5:87599269-87599288 None:intergenic 50.0%
GTAAGGTGACAGACAAGTGG+AGG - Chr5:87599318-87599337 MsG0580028853.01.T01:intron 50.0%
TAGATACACTCTTCCTCGCC+TGG + Chr5:87599246-87599265 None:intergenic 50.0%
TGAGGCAGAAAAGGGAGTGA+CGG - Chr5:87599385-87599404 MsG0580028853.01.T01:intron 50.0%
TGCGTTGAAATGCCCATGAC+CGG + Chr5:87598921-87598940 None:intergenic 50.0%
TGCTTCCACTCCTAGCTTAG+AGG - Chr5:87597150-87597169 MsG0580028853.01.T01:CDS 50.0%
TGTGGGGACAAAAGGAACGT+AGG + Chr5:87598534-87598553 None:intergenic 50.0%
TTCAGTGTGGTGTAGGAGGA+CGG - Chr5:87598231-87598250 MsG0580028853.01.T01:intron 50.0%
! CCTTTTCAGTGTGGTGTAGG+AGG - Chr5:87598227-87598246 MsG0580028853.01.T01:intron 50.0%
! CTGCCTTTTCAGTGTGGTGT+AGG - Chr5:87598224-87598243 MsG0580028853.01.T01:intron 50.0%
! TACAATGCTGCCTTGGCCTT+AGG - Chr5:87598966-87598985 MsG0580028853.01.T01:five_prime_UTR 50.0%
!! CAAGATGAATTGGCTCTGGC+AGG - Chr5:87599269-87599288 MsG0580028853.01.T01:intron 50.0%
ACAGCCACTTCTCCTGCAGT+CGG + Chr5:87597400-87597419 None:intergenic 55.0%
CCGGTAAGGTGACAGACAAG+TGG - Chr5:87599315-87599334 MsG0580028853.01.T01:intron 55.0%
GGAGACCTCTAAGCTAGGAG+TGG + Chr5:87597158-87597177 None:intergenic 55.0%
GGGACAAAAGGAACGTAGGC+TGG + Chr5:87598530-87598549 None:intergenic 55.0%
! AAGGAACGTAGGCTGGTTGC+AGG + Chr5:87598523-87598542 None:intergenic 55.0%
! GGCTGTTTCGTCTGAGCAGA+AGG - Chr5:87597414-87597433 MsG0580028853.01.T01:intron 55.0%
! TATGCGTGTGTTGGTCAGCC+TGG - Chr5:87597325-87597344 MsG0580028853.01.T01:intron 55.0%
!! GGTTCTGAAGCAGGCGTCTT+TGG - Chr5:87597447-87597466 MsG0580028853.01.T01:intron 55.0%
CAGCCACTTCTCCTGCAGTC+GGG + Chr5:87597399-87597418 None:intergenic 60.0%
GAACCCGACTGCAGGAGAAG+TGG - Chr5:87597393-87597412 MsG0580028853.01.T01:intron 60.0%
TTTCCTGACAGTGCCAGGCG+AGG - Chr5:87599230-87599249 MsG0580028853.01.T01:intron 60.0%
CTTCCTCGCCTGGCACTGTC+AGG + Chr5:87599236-87599255 None:intergenic 65.0%
GTGCTCGCGAACCCGACTGC+AGG - Chr5:87597385-87597404 MsG0580028853.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 87596025 87600038 87596025 ID=MsG0580028853.01;Name=MsG0580028853.01
Chr5 mRNA 87596025 87600038 87596025 ID=MsG0580028853.01.T01;Parent=MsG0580028853.01;Name=MsG0580028853.01.T01;_AED=0.42;_eAED=0.42;_QI=421|1|1|1|0.83|0.71|7|128|434
Chr5 exon 87599819 87600038 87599819 ID=MsG0580028853.01.T01:exon:14721;Parent=MsG0580028853.01.T01
Chr5 five_prime_UTR 87599819 87600038 87599819 ID=MsG0580028853.01.T01:five_prime_utr;Parent=MsG0580028853.01.T01
Chr5 five_prime_UTR 87598937 87599137 87598937 ID=MsG0580028853.01.T01:five_prime_utr;Parent=MsG0580028853.01.T01
Chr5 CDS 87598456 87598936 87598456 ID=MsG0580028853.01.T01:cds;Parent=MsG0580028853.01.T01
Chr5 CDS 87598308 87598358 87598308 ID=MsG0580028853.01.T01:cds;Parent=MsG0580028853.01.T01
Chr5 CDS 87597655 87597827 87597655 ID=MsG0580028853.01.T01:cds;Parent=MsG0580028853.01.T01
Chr5 CDS 87597030 87597265 87597030 ID=MsG0580028853.01.T01:cds;Parent=MsG0580028853.01.T01
Chr5 CDS 87596630 87596822 87596630 ID=MsG0580028853.01.T01:cds;Parent=MsG0580028853.01.T01
Chr5 CDS 87596153 87596323 87596153 ID=MsG0580028853.01.T01:cds;Parent=MsG0580028853.01.T01
Chr5 three_prime_UTR 87596025 87596152 87596025 ID=MsG0580028853.01.T01:three_prime_utr;Parent=MsG0580028853.01.T01
Chr5 mRNA 87596025 87599710 87596025 ID=MsG0580028853.01.T02;Parent=MsG0580028853.01;Name=MsG0580028853.01.T02;_AED=0.42;_eAED=0.42;_QI=357|1|1|1|0.83|0.71|7|128|434
Chr5 exon 87599555 87599710 87599555 ID=MsG0580028853.01.T02:exon:14728;Parent=MsG0580028853.01.T02
Chr5 five_prime_UTR 87599555 87599710 87599555 ID=MsG0580028853.01.T02:five_prime_utr;Parent=MsG0580028853.01.T02
Chr5 five_prime_UTR 87598937 87599137 87598937 ID=MsG0580028853.01.T02:five_prime_utr;Parent=MsG0580028853.01.T02
Chr5 CDS 87598456 87598936 87598456 ID=MsG0580028853.01.T02:cds;Parent=MsG0580028853.01.T02
Chr5 CDS 87598308 87598358 87598308 ID=MsG0580028853.01.T02:cds;Parent=MsG0580028853.01.T02
Chr5 CDS 87597655 87597827 87597655 ID=MsG0580028853.01.T02:cds;Parent=MsG0580028853.01.T02
Chr5 CDS 87597030 87597265 87597030 ID=MsG0580028853.01.T02:cds;Parent=MsG0580028853.01.T02
Chr5 CDS 87596630 87596822 87596630 ID=MsG0580028853.01.T02:cds;Parent=MsG0580028853.01.T02
Chr5 CDS 87596153 87596323 87596153 ID=MsG0580028853.01.T02:cds;Parent=MsG0580028853.01.T02
Chr5 three_prime_UTR 87596025 87596152 87596025 ID=MsG0580028853.01.T02:three_prime_utr;Parent=MsG0580028853.01.T02
Gene Sequence

>MsG0580028853.01.T02

ATGTCTGTGACAATATTAAGGGTTGCTTCCACTCCTAGCTTAGAGGTCTCCTGTTCCAATGGTTTACTCGATTCTTTCGGGGTTGTGAAGCTTGTAGATTCTTCGAAGTTCTTGTCTAGAGACTCTGTGTCAATAAGAGCAAAAAAGAATGATAAGAAAAAGACACGGAGATTTTGCTCATTGAGTACAGATATTAAGTATGCGTGTGTTGGTCAGCCTGGCTTAGAGAGTGCTAGTAACTTCCCTTTGTTATCGAATGTGCTCGCGAACCCGACTGCAGGAGAAGTGGCTGTTTCGTCTGAGCAGAAGGTTTATGATGTGGTTCTGAAGCAGGCGTCTTTGGTTAAGAGGAAGCTGAGCTCTACCGGTGAACTTGAAGTGAAACCGGAAATTGTTTTGCCTGGGAATTTGAGTTTGTTGAGTGAAGCATATGATAGATGTGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACTTGGGAACTCTTCTAATGACTCCCGAAAGGCGAAGAGCTATTTGGGCTATATATGTGTGGTGTAGGAGGACGGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACAGCAACTGCAATGGATAGGTGGGAATCAAGATTGGACGAACTTTTCCAAGGGCGTCCATTTGATATGCTTGATGCTGCTTTATCAGATACCGTCAACAGATTTCCTGTTGATATCCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATACAAAAGCTTTGATGAACTATATCTCTACTGTTACTATGTTGCTGGAACTGTTGGTTTAATGAGTGTTCCGGTCATGGGCATTTCAACGCATTCGCAAGCCACAACAGAGAGTGTGTACAATGCTGCCTTGGCCTTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGATGCCAGGCGAGGAAGAGTGTATCTACCACAAGATGAATTGGCTCTGGCAGGGCTTTCAGATGACGACATATTTGCCGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCGAGAACGTTTTTTGATGAGGCAGAAAAGGGAGTGACGGAGCTCAATGAACAGAGCAGATGGCCGGTGTGGGCATCTTTGCTATTATATCGCCAAATATTGGACGAAATAGAAGCTAATGATTACAACAATTTCACTAAGAGGGCTTATGTGAGCAAAACCAAGAAGTTACTTTCTTTACCACTTGCATATGCTAGATCTATGGTTCCTCCATCAAAAAAGTTATCTCATGTATGA

>MsG0580028853.01.T01

ATGTCTGTGACAATATTAAGGGTTGCTTCCACTCCTAGCTTAGAGGTCTCCTGTTCCAATGGTTTACTCGATTCTTTCGGGGTTGTGAAGCTTGTAGATTCTTCGAAGTTCTTGTCTAGAGACTCTGTGTCAATAAGAGCAAAAAAGAATGATAAGAAAAAGACACGGAGATTTTGCTCATTGAGTACAGATATTAAGTATGCGTGTGTTGGTCAGCCTGGCTTAGAGAGTGCTAGTAACTTCCCTTTGTTATCGAATGTGCTCGCGAACCCGACTGCAGGAGAAGTGGCTGTTTCGTCTGAGCAGAAGGTTTATGATGTGGTTCTGAAGCAGGCGTCTTTGGTTAAGAGGAAGCTGAGCTCTACCGGTGAACTTGAAGTGAAACCGGAAATTGTTTTGCCTGGGAATTTGAGTTTGTTGAGTGAAGCATATGATAGATGTGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACTTGGGAACTCTTCTAATGACTCCCGAAAGGCGAAGAGCTATTTGGGCTATATATGTGTGGTGTAGGAGGACGGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACAGCAACTGCAATGGATAGGTGGGAATCAAGATTGGACGAACTTTTCCAAGGGCGTCCATTTGATATGCTTGATGCTGCTTTATCAGATACCGTCAACAGATTTCCTGTTGATATCCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATACAAAAGCTTTGATGAACTATATCTCTACTGTTACTATGTTGCTGGAACTGTTGGTTTAATGAGTGTTCCGGTCATGGGCATTTCAACGCATTCGCAAGCCACAACAGAGAGTGTGTACAATGCTGCCTTGGCCTTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGATGCCAGGCGAGGAAGAGTGTATCTACCACAAGATGAATTGGCTCTGGCAGGGCTTTCAGATGACGACATATTTGCCGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCGAGAACGTTTTTTGATGAGGCAGAAAAGGGAGTGACGGAGCTCAATGAACAGAGCAGATGGCCGGTGTGGGCATCTTTGCTATTATATCGCCAAATATTGGACGAAATAGAAGCTAATGATTACAACAATTTCACTAAGAGGGCTTATGTGAGCAAAACCAAGAAGTTACTTTCTTTACCACTTGCATATGCTAGATCTATGGTTCCTCCATCAAAAAAGTTATCTCATGTATGA

Protein sequence

>MsG0580028853.01.T02

MSVTILRVASTPSLEVSCSNGLLDSFGVVKLVDSSKFLSRDSVSIRAKKNDKKKTRRFCSLSTDIKYACVGQPGLESASNFPLLSNVLANPTAGEVAVSSEQKVYDVVLKQASLVKRKLSSTGELEVKPEIVLPGNLSLLSEAYDRCGEICAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITATAMDRWESRLDELFQGRPFDMLDAALSDTVNRFPVDIQPFKDMIEGMRMDLKKSRYKSFDELYLYCYYVAGTVGLMSVPVMGISTHSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELALAGLSDDDIFAGKVTDKWRNFMKSQIKRARTFFDEAEKGVTELNEQSRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKTKKLLSLPLAYARSMVPPSKKLSHV*

>MsG0580028853.01.T01

MSVTILRVASTPSLEVSCSNGLLDSFGVVKLVDSSKFLSRDSVSIRAKKNDKKKTRRFCSLSTDIKYACVGQPGLESASNFPLLSNVLANPTAGEVAVSSEQKVYDVVLKQASLVKRKLSSTGELEVKPEIVLPGNLSLLSEAYDRCGEICAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITATAMDRWESRLDELFQGRPFDMLDAALSDTVNRFPVDIQPFKDMIEGMRMDLKKSRYKSFDELYLYCYYVAGTVGLMSVPVMGISTHSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELALAGLSDDDIFAGKVTDKWRNFMKSQIKRARTFFDEAEKGVTELNEQSRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKTKKLLSLPLAYARSMVPPSKKLSHV*