Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040416.01.T01 | RHN47766.1 | 94.958 | 238 | 12 | 0 | 27 | 264 | 98 | 335 | 3.76E-166 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040416.01.T01 | Q4V3D9 | 57.914 | 278 | 77 | 1 | 27 | 264 | 97 | 374 | 1.58E-110 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040416.01.T01 | A0A396H366 | 94.958 | 238 | 12 | 0 | 27 | 264 | 98 | 335 | 1.80e-166 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000017.01 | MsG0780040416.01 | 0.806318 | 8.717696e-50 | 4.717282e-47 |
| MsG0180003730.01 | MsG0780040416.01 | 0.805651 | 1.204468e-49 | 6.407307e-47 |
| MsG0780040319.01 | MsG0780040416.01 | 0.801709 | 7.923350e-49 | 3.809805e-46 |
| MsG0380014411.01 | MsG0780040416.01 | 0.817838 | 2.679464e-52 | 1.972873e-49 |
| MsG0480019693.01 | MsG0780040416.01 | 0.809006 | 2.341907e-50 | 1.359180e-47 |
| MsG0480021597.01 | MsG0780040416.01 | 0.806101 | 9.686663e-50 | 5.212641e-47 |
| MsG0580024836.01 | MsG0780040416.01 | 0.800926 | 1.145837e-48 | 5.401982e-46 |
| MsG0380015501.01 | MsG0780040416.01 | 0.824787 | 6.677904e-54 | 5.975385e-51 |
| MsG0280008233.01 | MsG0780040416.01 | 0.802179 | 6.343120e-49 | 3.086644e-46 |
| MsG0280008939.01 | MsG0780040416.01 | 0.802121 | 6.518825e-49 | 3.167506e-46 |
| MsG0780036584.01 | MsG0780040416.01 | 0.815362 | 9.609678e-52 | 6.611635e-49 |
| MsG0780039339.01 | MsG0780040416.01 | 0.817394 | 3.373766e-52 | 2.454054e-49 |
| MsG0780040080.01 | MsG0780040416.01 | 0.811720 | 6.078411e-51 | 3.790744e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040416.01.T01 | MTR_7g490330 | 94.958 | 238 | 12 | 0 | 27 | 264 | 88 | 325 | 4.98e-170 | 473 |
| MsG0780040416.01.T01 | MTR_7g490350 | 69.565 | 276 | 46 | 1 | 27 | 264 | 94 | 369 | 1.68e-136 | 389 |
| MsG0780040416.01.T01 | MTR_7g090300 | 68.841 | 276 | 48 | 1 | 27 | 264 | 94 | 369 | 3.27e-133 | 381 |
| MsG0780040416.01.T01 | MTR_5g091980 | 77.311 | 238 | 51 | 1 | 27 | 264 | 89 | 323 | 2.81e-131 | 374 |
| MsG0780040416.01.T01 | MTR_2g087780 | 49.434 | 265 | 93 | 2 | 40 | 264 | 132 | 395 | 1.45e-82 | 253 |
| MsG0780040416.01.T01 | MTR_2g099030 | 47.312 | 279 | 101 | 3 | 26 | 259 | 124 | 401 | 2.82e-80 | 248 |
| MsG0780040416.01.T01 | MTR_4g050190 | 47.183 | 284 | 103 | 4 | 27 | 264 | 109 | 391 | 5.46e-80 | 246 |
| MsG0780040416.01.T01 | MTR_7g090310 | 42.053 | 302 | 124 | 4 | 13 | 263 | 84 | 385 | 1.76e-79 | 245 |
| MsG0780040416.01.T01 | MTR_7g090320 | 42.960 | 277 | 114 | 3 | 31 | 263 | 110 | 386 | 3.22e-76 | 237 |
| MsG0780040416.01.T01 | MTR_4g112670 | 39.583 | 240 | 129 | 1 | 39 | 262 | 95 | 334 | 1.66e-58 | 189 |
| MsG0780040416.01.T01 | MTR_4g112650 | 41.525 | 236 | 122 | 2 | 39 | 258 | 94 | 329 | 2.57e-58 | 189 |
| MsG0780040416.01.T01 | MTR_4g112630 | 41.202 | 233 | 130 | 2 | 38 | 263 | 93 | 325 | 4.67e-58 | 188 |
| MsG0780040416.01.T01 | MTR_2g058450 | 41.322 | 242 | 127 | 2 | 38 | 264 | 95 | 336 | 5.00e-55 | 180 |
| MsG0780040416.01.T01 | MTR_2g058410 | 38.696 | 230 | 126 | 2 | 47 | 261 | 1 | 230 | 5.41e-46 | 154 |
| MsG0780040416.01.T01 | MTR_4g112620 | 35.193 | 233 | 113 | 2 | 39 | 263 | 98 | 300 | 7.78e-41 | 142 |
| MsG0780040416.01.T01 | MTR_0003s0530 | 38.889 | 180 | 94 | 1 | 91 | 254 | 2 | 181 | 4.62e-39 | 135 |
| MsG0780040416.01.T01 | MTR_8g074170 | 43.258 | 178 | 93 | 6 | 44 | 219 | 118 | 289 | 8.67e-36 | 131 |
| MsG0780040416.01.T01 | MTR_8g074270 | 42.262 | 168 | 94 | 3 | 44 | 211 | 118 | 282 | 1.09e-34 | 128 |
| MsG0780040416.01.T01 | MTR_8g074210 | 40.476 | 168 | 97 | 3 | 44 | 211 | 118 | 282 | 1.32e-32 | 123 |
| MsG0780040416.01.T01 | MTR_2g042370 | 29.435 | 248 | 136 | 4 | 54 | 264 | 112 | 357 | 5.44e-25 | 102 |
| MsG0780040416.01.T01 | MTR_4g112840 | 44.660 | 103 | 57 | 0 | 118 | 220 | 57 | 159 | 1.23e-24 | 97.1 |
| MsG0780040416.01.T01 | MTR_2g042420 | 29.435 | 248 | 135 | 4 | 54 | 264 | 105 | 349 | 1.42e-24 | 100 |
| MsG0780040416.01.T01 | MTR_1g075865 | 41.509 | 106 | 61 | 1 | 95 | 200 | 7 | 111 | 1.96e-23 | 92.8 |
| MsG0780040416.01.T01 | MTR_2g042430 | 29.508 | 244 | 132 | 5 | 54 | 260 | 124 | 364 | 7.26e-23 | 96.7 |
| MsG0780040416.01.T01 | MTR_8g074320 | 39.394 | 132 | 75 | 3 | 41 | 169 | 92 | 221 | 1.01e-20 | 88.2 |
| MsG0780040416.01.T01 | MTR_2g058430 | 39.560 | 91 | 51 | 1 | 38 | 124 | 52 | 142 | 2.93e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040416.01.T01 | AT3G57030 | 57.914 | 278 | 77 | 1 | 27 | 264 | 97 | 374 | 1.61e-111 | 326 |
| MsG0780040416.01.T01 | AT1G08470 | 49.438 | 267 | 94 | 2 | 38 | 264 | 124 | 389 | 6.37e-81 | 249 |
| MsG0780040416.01.T01 | AT5G22020 | 48.302 | 265 | 96 | 2 | 40 | 264 | 132 | 395 | 3.18e-79 | 244 |
| MsG0780040416.01.T01 | AT5G22020 | 48.302 | 265 | 96 | 2 | 40 | 264 | 132 | 395 | 3.18e-79 | 244 |
| MsG0780040416.01.T01 | AT5G22020 | 48.302 | 265 | 96 | 2 | 40 | 264 | 132 | 395 | 3.18e-79 | 244 |
| MsG0780040416.01.T01 | AT2G41290 | 45.638 | 298 | 112 | 6 | 16 | 264 | 80 | 376 | 4.14e-72 | 226 |
| MsG0780040416.01.T01 | AT3G59530 | 45.038 | 262 | 93 | 3 | 38 | 260 | 144 | 393 | 2.06e-71 | 224 |
| MsG0780040416.01.T01 | AT3G59530 | 45.038 | 262 | 93 | 3 | 38 | 260 | 144 | 393 | 2.06e-71 | 224 |
| MsG0780040416.01.T01 | AT3G59530 | 45.038 | 262 | 93 | 3 | 38 | 260 | 144 | 393 | 2.06e-71 | 224 |
| MsG0780040416.01.T01 | AT2G41300 | 45.076 | 264 | 105 | 2 | 38 | 261 | 127 | 390 | 3.66e-68 | 216 |
| MsG0780040416.01.T01 | AT3G57020 | 43.846 | 260 | 105 | 3 | 43 | 261 | 107 | 366 | 1.35e-63 | 204 |
| MsG0780040416.01.T01 | AT3G57010 | 44.231 | 260 | 104 | 3 | 43 | 261 | 108 | 367 | 1.16e-62 | 201 |
| MsG0780040416.01.T01 | AT3G57020 | 43.411 | 258 | 105 | 3 | 45 | 261 | 95 | 352 | 2.32e-61 | 197 |
| MsG0780040416.01.T01 | AT1G74020 | 42.276 | 246 | 132 | 2 | 29 | 264 | 82 | 327 | 1.69e-59 | 192 |
| MsG0780040416.01.T01 | AT1G74010 | 42.308 | 234 | 121 | 4 | 43 | 264 | 94 | 325 | 9.88e-55 | 179 |
| MsG0780040416.01.T01 | AT1G74000 | 40.086 | 232 | 129 | 2 | 43 | 264 | 98 | 329 | 5.20e-52 | 172 |
| MsG0780040416.01.T01 | AT3G51440 | 38.636 | 176 | 102 | 4 | 44 | 218 | 113 | 283 | 1.32e-30 | 117 |
| MsG0780040416.01.T01 | AT3G51430 | 37.356 | 174 | 103 | 4 | 44 | 216 | 113 | 281 | 1.26e-28 | 112 |
| MsG0780040416.01.T01 | AT3G51430 | 36.932 | 176 | 105 | 4 | 44 | 218 | 113 | 283 | 1.64e-28 | 112 |
| MsG0780040416.01.T01 | AT3G51420 | 35.503 | 169 | 103 | 4 | 44 | 211 | 113 | 276 | 3.68e-27 | 108 |
| MsG0780040416.01.T01 | AT3G51450 | 35.795 | 176 | 107 | 4 | 44 | 218 | 113 | 283 | 4.39e-27 | 108 |
Find 62 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTCATATGGTCAGTTT+TGG | 0.251338 | 7:-77230220 | MsG0780040416.01.T01:CDS |
| ATTCTTCGGCTTTGGCTTCA+TGG | 0.268437 | 7:-77230305 | MsG0780040416.01.T01:CDS |
| CTTTCACTTCACCAATGATT+TGG | 0.275944 | 7:-77231315 | MsG0780040416.01.T01:CDS |
| CTTCCTTTCGAAATCTTCTA+AGG | 0.294652 | 7:+77230142 | None:intergenic |
| GATGCCATATAATATATTAT+TGG | 0.296930 | 7:-77229913 | MsG0780040416.01.T01:three_prime_UTR |
| AAACTATAAACGCCAATATA+AGG | 0.301059 | 7:+77230053 | None:intergenic |
| TAAAGATGGTTCATTTCTTC+TGG | 0.309077 | 7:-77230351 | MsG0780040416.01.T01:CDS |
| GTATTGACTTTACCAGCTTT+TGG | 0.326444 | 7:+77230281 | None:intergenic |
| TTACTTAAAGCAACACCATT+AGG | 0.327844 | 7:+77230371 | None:intergenic |
| ATTGCCAATAATATATTATA+TGG | 0.329731 | 7:+77229909 | None:intergenic |
| GCGGGAGGCCACTAGGACTA+AGG | 0.337333 | 7:-77231451 | MsG0780040416.01.T01:CDS |
| CCTCAAATTGCAGGATTCTT+CGG | 0.337474 | 7:-77230319 | MsG0780040416.01.T01:CDS |
| CCGAAGAATCCTGCAATTTG+AGG | 0.360078 | 7:+77230319 | None:intergenic |
| ATTGCAGGATTCTTCGGCTT+TGG | 0.363044 | 7:-77230313 | MsG0780040416.01.T01:CDS |
| TTCATTGATGTCCAAATCAT+TGG | 0.369450 | 7:+77231304 | None:intergenic |
| CTTGTTAGTGGCGACAAGAC+TGG | 0.382913 | 7:-77230458 | MsG0780040416.01.T01:CDS |
| CTTCAGCTTCTGTTGCTACT+CGG | 0.383213 | 7:+77231345 | None:intergenic |
| TAGCTGAAACCTCAAATTGC+AGG | 0.403544 | 7:-77230328 | MsG0780040416.01.T01:CDS |
| CTTATATTGTCGGGAAAACC+TGG | 0.434775 | 7:+77230245 | None:intergenic |
| TGAATTTCTCCTTATATTGT+CGG | 0.438415 | 7:+77230235 | None:intergenic |
| AAGAGAAAGATGGAAAACTT+TGG | 0.439332 | 7:-77230094 | MsG0780040416.01.T01:CDS |
| TCAGTGGTAACGCCTTATAT+TGG | 0.440180 | 7:-77230065 | MsG0780040416.01.T01:CDS |
| CTCAACGTAGTAGGATCTGC+AGG | 0.441161 | 7:-77231380 | MsG0780040416.01.T01:CDS |
| CCGCAAATATGCTCTAACTT+TGG | 0.444704 | 7:+77231470 | None:intergenic |
| GGTGTTGCTTTAAGTAAAGA+TGG | 0.445655 | 7:-77230365 | MsG0780040416.01.T01:CDS |
| CAAAGTTAGAGCATATTTGC+GGG | 0.456089 | 7:-77231469 | MsG0780040416.01.T01:CDS |
| GAATTTCTCCTTATATTGTC+GGG | 0.456126 | 7:+77230236 | None:intergenic |
| GAAGTGAAAGTCTTATTAAG+AGG | 0.463897 | 7:-77230404 | MsG0780040416.01.T01:CDS |
| TTCAGCTTCTGTTGCTACTC+GGG | 0.470596 | 7:+77231346 | None:intergenic |
| TATATTGCTGATGCTTACCT+TGG | 0.473507 | 7:-77231404 | MsG0780040416.01.T01:CDS |
| TGCTCTAACTTTGGTGCGAA+TGG | 0.480454 | 7:+77231479 | None:intergenic |
| CAAATCATTGGTGAAGTGAA+AGG | 0.483098 | 7:+77231316 | None:intergenic |
| CATATTTGCGGGAGGCCACT+AGG | 0.483919 | 7:-77231458 | MsG0780040416.01.T01:CDS |
| TGGCTTCATGGACCAAAAGC+TGG | 0.484513 | 7:-77230293 | MsG0780040416.01.T01:CDS |
| ATCCTACTACGTTGAGGCCA+AGG | 0.514500 | 7:+77231387 | None:intergenic |
| CACTTCACTAATGTTCCTCA+TGG | 0.516999 | 7:+77230118 | None:intergenic |
| AAATCATTGGTGAAGTGAAA+GGG | 0.525518 | 7:+77231317 | None:intergenic |
| TTGTTAGTGGCGACAAGACT+GGG | 0.525775 | 7:-77230457 | MsG0780040416.01.T01:CDS |
| CCAAAGTTAGAGCATATTTG+CGG | 0.526459 | 7:-77231470 | MsG0780040416.01.T01:CDS |
| AATATAAGGAGAAATTCATA+TGG | 0.526476 | 7:-77230230 | MsG0780040416.01.T01:CDS |
| TACCTTGGCCTCAACGTAGT+AGG | 0.526697 | 7:-77231389 | MsG0780040416.01.T01:CDS |
| AGTGAAGTGGAAGAGAAAGA+TGG | 0.526795 | 7:-77230104 | MsG0780040416.01.T01:CDS |
| ACATAGATTTGTCCCTTGCA+TGG | 0.530016 | 7:+77229993 | None:intergenic |
| GCTGTAAAGCTGAATGATGA+AGG | 0.537230 | 7:-77230179 | MsG0780040416.01.T01:CDS |
| AAAACTTTGGATTGCATCAG+TGG | 0.539733 | 7:-77230081 | MsG0780040416.01.T01:CDS |
| CCGTGACCTTGAAAATATAA+CGG | 0.555232 | 7:+77231511 | None:intergenic |
| TTATCAAACCTTAGTCCTAG+TGG | 0.561618 | 7:+77231443 | None:intergenic |
| AGCTTCTGTTGCTACTCGGG+TGG | 0.570276 | 7:+77231349 | None:intergenic |
| CATGAGGAACATTAGTGAAG+TGG | 0.579908 | 7:-77230117 | MsG0780040416.01.T01:CDS |
| AAACCTTAGAAGATTTCGAA+AGG | 0.590400 | 7:-77230145 | MsG0780040416.01.T01:CDS |
| GTGTGTACATGTGCCATGCA+AGG | 0.614739 | 7:-77230006 | MsG0780040416.01.T01:three_prime_UTR |
| TCAACGTAGTAGGATCTGCA+GGG | 0.635919 | 7:-77231379 | MsG0780040416.01.T01:CDS |
| TTGGACATCAATGAAGATGA+AGG | 0.636594 | 7:-77231296 | MsG0780040416.01.T01:CDS |
| CGAGTAGCAACAGAAGCTGA+AGG | 0.643580 | 7:-77231344 | MsG0780040416.01.T01:CDS |
| CAACACCATTAGGAAAAGCA+AGG | 0.647500 | 7:+77230381 | None:intergenic |
| CAACGTAGTAGGATCTGCAG+GGG | 0.657677 | 7:-77231378 | MsG0780040416.01.T01:CDS |
| AGTTAGAGCATATTTGCGGG+AGG | 0.660243 | 7:-77231466 | MsG0780040416.01.T01:CDS |
| TGTGTACATGTGCCATGCAA+GGG | 0.672477 | 7:-77230005 | MsG0780040416.01.T01:three_prime_UTR |
| CTGCAGATCCTACTACGTTG+AGG | 0.674681 | 7:+77231381 | None:intergenic |
| ATTTCGAAAGGAAGACCATG+AGG | 0.679977 | 7:-77230133 | MsG0780040416.01.T01:CDS |
| AACGTAGTAGGATCTGCAGG+GGG | 0.742733 | 7:-77231377 | MsG0780040416.01.T01:CDS |
| TTAGTGGCGACAAGACTGGG+AGG | 0.768612 | 7:-77230454 | MsG0780040416.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATATAAAAATATAGTAA+TGG | - | Chr7:77230811-77230830 | MsG0780040416.01.T01:intron | 10.0% |
| !!! | CTATATTTTTATATAACATA+TGG | + | Chr7:77230808-77230827 | None:intergenic | 10.0% |
| !!! | TAAATGAAATGAATTTTAAT+GGG | + | Chr7:77230625-77230644 | None:intergenic | 10.0% |
| !! | ACATTATAATGACTATATTA+AGG | + | Chr7:77230698-77230717 | None:intergenic | 15.0% |
| !! | ATTGCCAATAATATATTATA+TGG | + | Chr7:77231562-77231581 | None:intergenic | 15.0% |
| !! | CATTATAATGACTATATTAA+GGG | + | Chr7:77230697-77230716 | None:intergenic | 15.0% |
| !!! | GTAAATGAAATGAATTTTAA+TGG | + | Chr7:77230626-77230645 | None:intergenic | 15.0% |
| !! | AATATAAGGAGAAATTCATA+TGG | - | Chr7:77231238-77231257 | MsG0780040416.01.T01:intron | 20.0% |
| !! | GATATATTTGATTGTAGAAA+AGG | + | Chr7:77230269-77230288 | None:intergenic | 20.0% |
| !! | GATGCCATATAATATATTAT+TGG | - | Chr7:77231555-77231574 | MsG0780040416.01.T01:CDS | 20.0% |
| !! | TAACATAATGATCTATATGT+TGG | - | Chr7:77230955-77230974 | MsG0780040416.01.T01:intron | 20.0% |
| !! | TTCTTAAAAAAGGAAAATGT+CGG | + | Chr7:77230401-77230420 | None:intergenic | 20.0% |
| !!! | TACAAAAGCATTCTTAAAAA+AGG | + | Chr7:77230411-77230430 | None:intergenic | 20.0% |
| ! | AAACTATAAACGCCAATATA+AGG | + | Chr7:77231418-77231437 | None:intergenic | 25.0% |
| ! | CTAAGGTTTGATAAGAAAAA+TGG | - | Chr7:77230034-77230053 | MsG0780040416.01.T01:exon | 25.0% |
| ! | TGAATTTCTCCTTATATTGT+CGG | + | Chr7:77231236-77231255 | None:intergenic | 25.0% |
| ! | TTAGAGTATATCAAAGTATG+AGG | - | Chr7:77230873-77230892 | MsG0780040416.01.T01:intron | 25.0% |
| !! | AAATTCATATGGTCAGTTTT+GGG | - | Chr7:77231249-77231268 | MsG0780040416.01.T01:intron | 25.0% |
| !! | CATTGTTATTGATTACAAAC+AGG | - | Chr7:77230308-77230327 | MsG0780040416.01.T01:CDS | 25.0% |
| !!! | TATACACTTTTACTTGTTAG+TGG | - | Chr7:77230998-77231017 | MsG0780040416.01.T01:intron | 25.0% |
| AAACCTTAGAAGATTTCGAA+AGG | - | Chr7:77231323-77231342 | MsG0780040416.01.T01:CDS | 30.0% | |
| AAATCATTGGTGAAGTGAAA+GGG | + | Chr7:77230154-77230173 | None:intergenic | 30.0% | |
| AAGAGAAAGATGGAAAACTT+TGG | - | Chr7:77231374-77231393 | MsG0780040416.01.T01:CDS | 30.0% | |
| GAATTTCTCCTTATATTGTC+GGG | + | Chr7:77231235-77231254 | None:intergenic | 30.0% | |
| TAAAGATGGTTCATTTCTTC+TGG | - | Chr7:77231117-77231136 | MsG0780040416.01.T01:intron | 30.0% | |
| TACAAAATCCCTCTAATTTG+CGG | + | Chr7:77230569-77230588 | None:intergenic | 30.0% | |
| TTACTTAAAGCAACACCATT+AGG | + | Chr7:77231100-77231119 | None:intergenic | 30.0% | |
| TTCATTGATGTCCAAATCAT+TGG | + | Chr7:77230167-77230186 | None:intergenic | 30.0% | |
| ! | AATACTTTTGTTGATCTTCC+AGG | - | Chr7:77231205-77231224 | MsG0780040416.01.T01:intron | 30.0% |
| ! | AATCGTATGGAGGATAATTT+TGG | + | Chr7:77230537-77230556 | None:intergenic | 30.0% |
| ! | ACTATATTAAGGGTATGCTT+GGG | + | Chr7:77230687-77230706 | None:intergenic | 30.0% |
| ! | GAAATTCATATGGTCAGTTT+TGG | - | Chr7:77231248-77231267 | MsG0780040416.01.T01:intron | 30.0% |
| ! | GTTGTACCGTTATATTTTCA+AGG | - | Chr7:77229951-77229970 | MsG0780040416.01.T01:three_prime_UTR | 30.0% |
| ! | TTAATGGGAACACTTTTGAA+GGG | + | Chr7:77230610-77230629 | None:intergenic | 30.0% |
| ! | TTTAATGGGAACACTTTTGA+AGG | + | Chr7:77230611-77230630 | None:intergenic | 30.0% |
| !! | GAAGTGAAAGTCTTATTAAG+AGG | - | Chr7:77231064-77231083 | MsG0780040416.01.T01:intron | 30.0% |
| !!! | TGTTGGTCACTTTTATTTTC+AGG | - | Chr7:77230972-77230991 | MsG0780040416.01.T01:intron | 30.0% |
| AAAACTTTGGATTGCATCAG+TGG | - | Chr7:77231387-77231406 | MsG0780040416.01.T01:CDS | 35.0% | |
| ATGAGGTTCGATTCTTTCAA+TGG | - | Chr7:77230890-77230909 | MsG0780040416.01.T01:intron | 35.0% | |
| CAAAGTTAGAGCATATTTGC+GGG | - | Chr7:77229999-77230018 | MsG0780040416.01.T01:three_prime_UTR | 35.0% | |
| CAAATCATTGGTGAAGTGAA+AGG | + | Chr7:77230155-77230174 | None:intergenic | 35.0% | |
| CCAAAGTTAGAGCATATTTG+CGG | - | Chr7:77229998-77230017 | MsG0780040416.01.T01:three_prime_UTR | 35.0% | |
| CCGTGACCTTGAAAATATAA+CGG | + | Chr7:77229960-77229979 | None:intergenic | 35.0% | |
| CTTCCTTTCGAAATCTTCTA+AGG | + | Chr7:77231329-77231348 | None:intergenic | 35.0% | |
| CTTTCACTTCACCAATGATT+TGG | - | Chr7:77230153-77230172 | MsG0780040416.01.T01:CDS | 35.0% | |
| GGAGTTAAAAAATCGTATGG+AGG | + | Chr7:77230547-77230566 | None:intergenic | 35.0% | |
| TATATTGCTGATGCTTACCT+TGG | - | Chr7:77230064-77230083 | MsG0780040416.01.T01:CDS | 35.0% | |
| TTACGAAATACACGCATGAA+AGG | - | Chr7:77230335-77230354 | MsG0780040416.01.T01:CDS | 35.0% | |
| TTATCAAACCTTAGTCCTAG+TGG | + | Chr7:77230028-77230047 | None:intergenic | 35.0% | |
| TTGGACATCAATGAAGATGA+AGG | - | Chr7:77230172-77230191 | MsG0780040416.01.T01:CDS | 35.0% | |
| TTTAACTCCCGCAAATTAGA+GGG | - | Chr7:77230558-77230577 | MsG0780040416.01.T01:intron | 35.0% | |
| ! | ACAAAATCCCTCTAATTTGC+GGG | + | Chr7:77230568-77230587 | None:intergenic | 35.0% |
| ! | GACTATATTAAGGGTATGCT+TGG | + | Chr7:77230688-77230707 | None:intergenic | 35.0% |
| ! | TCTTTCAATGGTGCCAATTT+CGG | - | Chr7:77230902-77230921 | MsG0780040416.01.T01:intron | 35.0% |
| !! | CCGTTATATTTTCAAGGTCA+CGG | - | Chr7:77229957-77229976 | MsG0780040416.01.T01:three_prime_UTR | 35.0% |
| !! | GGTGTTGCTTTAAGTAAAGA+TGG | - | Chr7:77231103-77231122 | MsG0780040416.01.T01:intron | 35.0% |
| !! | GTATGGAGGATAATTTTGGT+TGG | + | Chr7:77230533-77230552 | None:intergenic | 35.0% |
| !! | TTTTAACTCCCGCAAATTAG+AGG | - | Chr7:77230557-77230576 | MsG0780040416.01.T01:intron | 35.0% |
| !!! | GTATTGACTTTACCAGCTTT+TGG | + | Chr7:77231190-77231209 | None:intergenic | 35.0% |
| ACATAGATTTGTCCCTTGCA+TGG | + | Chr7:77231478-77231497 | None:intergenic | 40.0% | |
| AGTGAAGTGGAAGAGAAAGA+TGG | - | Chr7:77231364-77231383 | MsG0780040416.01.T01:CDS | 40.0% | |
| ATTTCGAAAGGAAGACCATG+AGG | - | Chr7:77231335-77231354 | MsG0780040416.01.T01:CDS | 40.0% | |
| CAACACCATTAGGAAAAGCA+AGG | + | Chr7:77231090-77231109 | None:intergenic | 40.0% | |
| CACTTCACTAATGTTCCTCA+TGG | + | Chr7:77231353-77231372 | None:intergenic | 40.0% | |
| CATGAGGAACATTAGTGAAG+TGG | - | Chr7:77231351-77231370 | MsG0780040416.01.T01:CDS | 40.0% | |
| CCAAACTAACTCACCGAAAT+TGG | + | Chr7:77230918-77230937 | None:intergenic | 40.0% | |
| CCAATTTCGGTGAGTTAGTT+TGG | - | Chr7:77230915-77230934 | MsG0780040416.01.T01:intron | 40.0% | |
| CCGCAAATATGCTCTAACTT+TGG | + | Chr7:77230001-77230020 | None:intergenic | 40.0% | |
| CCTCAAATTGCAGGATTCTT+CGG | - | Chr7:77231149-77231168 | MsG0780040416.01.T01:intron | 40.0% | |
| CTTATATTGTCGGGAAAACC+TGG | + | Chr7:77231226-77231245 | None:intergenic | 40.0% | |
| GCGGGAGTTAAAAAATCGTA+TGG | + | Chr7:77230550-77230569 | None:intergenic | 40.0% | |
| GCTGTAAAGCTGAATGATGA+AGG | - | Chr7:77231289-77231308 | MsG0780040416.01.T01:CDS | 40.0% | |
| TAGCTGAAACCTCAAATTGC+AGG | - | Chr7:77231140-77231159 | MsG0780040416.01.T01:intron | 40.0% | |
| TATCTCAAACCAACACCACA+AGG | + | Chr7:77230853-77230872 | None:intergenic | 40.0% | |
| ! | CAGGTTTTCCCGACAATATA+AGG | - | Chr7:77231224-77231243 | MsG0780040416.01.T01:intron | 40.0% |
| ! | TCAGTGGTAACGCCTTATAT+TGG | - | Chr7:77231403-77231422 | MsG0780040416.01.T01:CDS | 40.0% |
| AGTTAGAGCATATTTGCGGG+AGG | - | Chr7:77230002-77230021 | MsG0780040416.01.T01:three_prime_UTR | 45.0% | |
| ATTGCAGGATTCTTCGGCTT+TGG | - | Chr7:77231155-77231174 | MsG0780040416.01.T01:intron | 45.0% | |
| CCGAAGAATCCTGCAATTTG+AGG | + | Chr7:77231152-77231171 | None:intergenic | 45.0% | |
| CTTCAGCTTCTGTTGCTACT+CGG | + | Chr7:77230126-77230145 | None:intergenic | 45.0% | |
| GTATGCTTGGGAGTTTAGGA+GGG | + | Chr7:77230675-77230694 | None:intergenic | 45.0% | |
| TCAACGTAGTAGGATCTGCA+GGG | - | Chr7:77230089-77230108 | MsG0780040416.01.T01:CDS | 45.0% | |
| TGTGTACATGTGCCATGCAA+GGG | - | Chr7:77231463-77231482 | MsG0780040416.01.T01:CDS | 45.0% | |
| TTCAGCTTCTGTTGCTACTC+GGG | + | Chr7:77230125-77230144 | None:intergenic | 45.0% | |
| TTGTTAGTGGCGACAAGACT+GGG | - | Chr7:77231011-77231030 | MsG0780040416.01.T01:intron | 45.0% | |
| ! | AAGGGTATGCTTGGGAGTTT+AGG | + | Chr7:77230679-77230698 | None:intergenic | 45.0% |
| ! | ATTCTTCGGCTTTGGCTTCA+TGG | - | Chr7:77231163-77231182 | MsG0780040416.01.T01:intron | 45.0% |
| ! | GTAATGGAACCCGTTTGAGT+TGG | - | Chr7:77230827-77230846 | MsG0780040416.01.T01:intron | 45.0% |
| ! | TGCTCTAACTTTGGTGCGAA+TGG | + | Chr7:77229992-77230011 | None:intergenic | 45.0% |
| ! | TTGGGAGTTTAGGAGGGTAT+GGG | + | Chr7:77230669-77230688 | None:intergenic | 45.0% |
| !! | AGAGGCCTTGCTTTTCCTAA+TGG | - | Chr7:77231082-77231101 | MsG0780040416.01.T01:intron | 45.0% |
| AACGTAGTAGGATCTGCAGG+GGG | - | Chr7:77230091-77230110 | MsG0780040416.01.T01:CDS | 50.0% | |
| ACCACAAGGCCAACTCAAAC+GGG | + | Chr7:77230839-77230858 | None:intergenic | 50.0% | |
| ATCCTACTACGTTGAGGCCA+AGG | + | Chr7:77230084-77230103 | None:intergenic | 50.0% | |
| CAACGTAGTAGGATCTGCAG+GGG | - | Chr7:77230090-77230109 | MsG0780040416.01.T01:CDS | 50.0% | |
| CACCACAAGGCCAACTCAAA+CGG | + | Chr7:77230840-77230859 | None:intergenic | 50.0% | |
| CGAGTAGCAACAGAAGCTGA+AGG | - | Chr7:77230124-77230143 | MsG0780040416.01.T01:CDS | 50.0% | |
| CTCAACGTAGTAGGATCTGC+AGG | - | Chr7:77230088-77230107 | MsG0780040416.01.T01:CDS | 50.0% | |
| CTGCAGATCCTACTACGTTG+AGG | + | Chr7:77230090-77230109 | None:intergenic | 50.0% | |
| CTTGGGAGTTTAGGAGGGTA+TGG | + | Chr7:77230670-77230689 | None:intergenic | 50.0% | |
| CTTGTTAGTGGCGACAAGAC+TGG | - | Chr7:77231010-77231029 | MsG0780040416.01.T01:intron | 50.0% | |
| GGTATGCTTGGGAGTTTAGG+AGG | + | Chr7:77230676-77230695 | None:intergenic | 50.0% | |
| GTGTGTACATGTGCCATGCA+AGG | - | Chr7:77231462-77231481 | MsG0780040416.01.T01:CDS | 50.0% | |
| TACCTTGGCCTCAACGTAGT+AGG | - | Chr7:77230079-77230098 | MsG0780040416.01.T01:CDS | 50.0% | |
| TGGCTTCATGGACCAAAAGC+TGG | - | Chr7:77231175-77231194 | MsG0780040416.01.T01:intron | 50.0% | |
| !! | TTGAGTTGGCCTTGTGGTGT+TGG | - | Chr7:77230841-77230860 | MsG0780040416.01.T01:intron | 50.0% |
| AGCTTCTGTTGCTACTCGGG+TGG | + | Chr7:77230122-77230141 | None:intergenic | 55.0% | |
| AGTAGGATCTGCAGGGGGTT+TGG | - | Chr7:77230096-77230115 | MsG0780040416.01.T01:CDS | 55.0% | |
| CATATTTGCGGGAGGCCACT+AGG | - | Chr7:77230010-77230029 | MsG0780040416.01.T01:three_prime_UTR | 55.0% | |
| TTAGTGGCGACAAGACTGGG+AGG | - | Chr7:77231014-77231033 | MsG0780040416.01.T01:intron | 55.0% | |
| !! | ACCCGTTTGAGTTGGCCTTG+TGG | - | Chr7:77230835-77230854 | MsG0780040416.01.T01:intron | 55.0% |
| GCGGGAGGCCACTAGGACTA+AGG | - | Chr7:77230017-77230036 | MsG0780040416.01.T01:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 77229890 | 77231600 | 77229890 | ID=MsG0780040416.01;Name=MsG0780040416.01 |
| Chr7 | mRNA | 77229890 | 77231600 | 77229890 | ID=MsG0780040416.01.T01;Parent=MsG0780040416.01;Name=MsG0780040416.01.T01;_AED=0.45;_eAED=0.46;_QI=0|1|0.5|1|1|0.5|2|159|264 |
| Chr7 | exon | 77229890 | 77230496 | 77229890 | ID=MsG0780040416.01.T01:exon:14850;Parent=MsG0780040416.01.T01 |
| Chr7 | exon | 77231254 | 77231600 | 77231254 | ID=MsG0780040416.01.T01:exon:14849;Parent=MsG0780040416.01.T01 |
| Chr7 | CDS | 77231254 | 77231600 | 77231254 | ID=MsG0780040416.01.T01:cds;Parent=MsG0780040416.01.T01 |
| Chr7 | CDS | 77230049 | 77230496 | 77230049 | ID=MsG0780040416.01.T01:cds;Parent=MsG0780040416.01.T01 |
| Chr7 | three_prime_UTR | 77229890 | 77230048 | 77229890 | ID=MsG0780040416.01.T01:three_prime_utr;Parent=MsG0780040416.01.T01 |
| Gene Sequence |
| Protein sequence |
