AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040319.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040319.01.T01 MTR_7g088210 96.281 242 5 1 50 291 15 252 6.21e-169 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040319.01.T01 AT2G41120 64.641 181 56 2 116 290 79 257 1.04e-81 247

Find 76 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCATCCCTTCTTCTTT+AGG 0.216226 7:+75851589 MsG0780040319.01.T01:CDS
GAAAGATATTTCAGCAGTTT+TGG 0.240858 7:+75852109 MsG0780040319.01.T01:CDS
TTATCCCGAAATTCAGTTTC+GGG 0.268281 7:+75849899 MsG0780040319.01.T01:CDS
ACTCCCCGAAACTGAATTTC+GGG 0.276995 7:-75849903 None:intergenic
TTCACACCATTCATCATCTA+TGG 0.281172 7:+75851496 MsG0780040319.01.T01:CDS
CCATGAATTAGTGTTCTTGA+TGG 0.287810 7:-75851832 None:intergenic
AGAAAGATCCTACCAACTTA+TGG 0.295152 7:+75852423 MsG0780040319.01.T01:CDS
CAAAATCAATGGAAAATGTT+TGG 0.326567 7:-75852815 None:intergenic
TTGAAATTCAGGTGCTGCTT+TGG 0.329593 7:-75851631 None:intergenic
AAAGGAGCTATGATGGAGTT+AGG 0.335188 7:+75852026 MsG0780040319.01.T01:CDS
AACTTAAGAAACGGTCCATT+AGG 0.336744 7:-75852083 None:intergenic
AACTCCCCGAAACTGAATTT+CGG 0.339687 7:-75849904 None:intergenic
TATATCGTGGCTACTACTTC+AGG 0.362312 7:-75852723 None:intergenic
ATTTCATCACCTATTCAATC+AGG 0.383372 7:+75851876 MsG0780040319.01.T01:CDS
ATGACTATCTTGAGTCCCTT+TGG 0.389670 7:+75851794 MsG0780040319.01.T01:CDS
CTTGAGCAAGCATCTTTGAA+TGG 0.392906 7:+75852697 MsG0780040319.01.T01:three_prime_UTR
GTTATCCCGAAATTCAGTTT+CGG 0.401005 7:+75849898 MsG0780040319.01.T01:CDS
AAGGAGCTATGATGGAGTTA+GGG 0.411699 7:+75852027 MsG0780040319.01.T01:CDS
AGCTCTTTGTTGTTTCATAC+AGG 0.411815 7:+75851668 MsG0780040319.01.T01:CDS
TGAGGTATGGGTGATAAAGT+TGG 0.413176 7:-75851573 None:intergenic
TATTGAAAACCTGATTGAAT+AGG 0.413740 7:-75851885 None:intergenic
GAAAGATCCTACCAACTTAT+GGG 0.416370 7:+75852424 MsG0780040319.01.T01:CDS
CCATCAAGAACACTAATTCA+TGG 0.433044 7:+75851832 MsG0780040319.01.T01:CDS
CTCCAAGGGCAAAGCTTCCC+AGG 0.433451 7:+75852548 MsG0780040319.01.T01:CDS
TACATTGTGTTCTGCCCTCA+AGG 0.434776 7:+75852505 MsG0780040319.01.T01:CDS
CTTTGCCCTTGGAGCTTCAG+TGG 0.439060 7:-75852539 None:intergenic
GAAGCAGTGACTCTATTTAA+TGG 0.441092 7:+75851751 MsG0780040319.01.T01:CDS
CGCGTATATGATCTAGAACT+TGG 0.442298 7:+75852466 MsG0780040319.01.T01:CDS
ATCTAAATCTACAAAATCAA+TGG 0.445583 7:-75852826 None:intergenic
ACTTAAGAAACGGTCCATTA+GGG 0.450454 7:-75852082 None:intergenic
TGCTGAATATAGAATCATAA+AGG 0.459099 7:+75852008 MsG0780040319.01.T01:intron
AAAGAAGAAGGGATGAGGTA+TGG 0.459773 7:-75851586 None:intergenic
AGAAAGATGGAGTTCCCTAA+TGG 0.471693 7:+75852068 MsG0780040319.01.T01:CDS
CAGCTAACTCAATCTGTGTC+TGG 0.475563 7:-75852142 None:intergenic
TGCTGCTTTGGATAAGTCAC+TGG 0.477277 7:-75851619 None:intergenic
GAATCATAAAGGAGCTATGA+TGG 0.481422 7:+75852019 MsG0780040319.01.T01:intron
CTTTCTCATTTCAGCAGCAT+AGG 0.482734 7:-75849865 None:intergenic
AGCCTGGGAAGCTTTGCCCT+TGG 0.483988 7:-75852550 None:intergenic
GATAAAGTTGGGATGAGGTA+TGG 0.498354 7:-75851561 None:intergenic
CTCTTCAGCATTGTGCCAAA+GGG 0.501801 7:-75851809 None:intergenic
TCTTTCTCAAACTTAAGAAA+CGG 0.509201 7:-75852092 None:intergenic
TGGCATCATTAGACCCTTGA+GGG 0.509241 7:-75852519 None:intergenic
AGGAAAGAAGAAGATGAAGA+TGG 0.510141 7:-75851527 None:intergenic
AATCGTCAAGGATCACATGC+TGG 0.512901 7:+75852664 MsG0780040319.01.T01:three_prime_UTR
GAGGTATGGGTGATAAAGTT+GGG 0.514731 7:-75851572 None:intergenic
AAGAAGAAGGGATGAGGTAT+GGG 0.517035 7:-75851585 None:intergenic
TTCTGAGGTAGCATTAAGCC+TGG 0.518926 7:-75852566 None:intergenic
GCTCTTCAGCATTGTGCCAA+AGG 0.529216 7:-75851810 None:intergenic
CAGCATATTCTCCCATAAGT+TGG 0.529568 7:-75852435 None:intergenic
GGATTGAAACCTAAAGAAGA+AGG 0.535314 7:-75851598 None:intergenic
GTATGAAACAACAAAGAGCT+TGG 0.535551 7:-75851665 None:intergenic
ACTATGTAAATTGAGAAAGA+TGG 0.536572 7:+75852055 MsG0780040319.01.T01:CDS
GGAATACTGCAATGTGCAGT+TGG 0.536785 7:+75851853 MsG0780040319.01.T01:CDS
GAAGAGCCATAGATGATGAA+TGG 0.538579 7:-75851502 None:intergenic
CTTATGGGAGAATATGCTGC+AGG 0.540524 7:+75852439 MsG0780040319.01.T01:CDS
GAGGTATGGTAGATAGTTTG+AGG 0.543282 7:-75851547 None:intergenic
TGATGATGTTTGTGTTGCAA+TGG 0.550109 7:+75852393 MsG0780040319.01.T01:CDS
ATCGTCAAGGATCACATGCT+GGG 0.566237 7:+75852665 MsG0780040319.01.T01:three_prime_UTR
TGGGTGATAAAGTTGGGATG+AGG 0.573129 7:-75851566 None:intergenic
TGATGCCACTGAAGCTCCAA+GGG 0.576853 7:+75852534 MsG0780040319.01.T01:CDS
ACATTGTGTTCTGCCCTCAA+GGG 0.584678 7:+75852506 MsG0780040319.01.T01:CDS
ATGATGCCACTGAAGCTCCA+AGG 0.592193 7:+75852533 MsG0780040319.01.T01:CDS
AACCTAAAGAAGAAGGGATG+AGG 0.592437 7:-75851591 None:intergenic
ATATTCTCCCATAAGTTGGT+AGG 0.594558 7:-75852431 None:intergenic
TATCCCGAAATTCAGTTTCG+GGG 0.598753 7:+75849900 MsG0780040319.01.T01:CDS
GATTGAAACCTAAAGAAGAA+GGG 0.606556 7:-75851597 None:intergenic
AGGAGCTATGATGGAGTTAG+GGG 0.608325 7:+75852028 MsG0780040319.01.T01:CDS
AGCTATGATGGAGTTAGGGG+AGG 0.617037 7:+75852031 MsG0780040319.01.T01:CDS
GTGGCATCATTAGACCCTTG+AGG 0.624422 7:-75852520 None:intergenic
ACACAAAGTTTAGTATATCG+TGG 0.625305 7:-75852736 None:intergenic
GCTATGATGGAGTTAGGGGA+GGG 0.630986 7:+75852032 MsG0780040319.01.T01:CDS
ATATGCTACAAGATGTTCTG+AGG 0.636965 7:-75852581 None:intergenic
TCTGAGGTAGCATTAAGCCT+GGG 0.648996 7:-75852565 None:intergenic
TTATGGGAGAATATGCTGCA+GGG 0.653319 7:+75852440 MsG0780040319.01.T01:CDS
CCTACTGTATAAAATCGTCA+AGG 0.659910 7:+75852652 MsG0780040319.01.T01:three_prime_UTR
GCAGTGACTCTATTTAATGG+TGG 0.669652 7:+75851754 MsG0780040319.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAATTATATTTATC+AGG + Chr7:75852773-75852792 MsG0780040319.01.T01:three_prime_UTR 10.0%
!! GTATATAAATATATAAGTAA+TGG + Chr7:75851242-75851261 MsG0780040319.01.T01:intron 10.0%
!! TAAAAAATTAGATAACTTAT+TGG - Chr7:75850440-75850459 None:intergenic 10.0%
!! AAAAAAAAGTCATAAACATA+CGG - Chr7:75850312-75850331 None:intergenic 15.0%
!! AAAAAATTATATTTATCAGG+AGG + Chr7:75852776-75852795 MsG0780040319.01.T01:three_prime_UTR 15.0%
!! AAGTCATTAATATATAAGTT+GGG - Chr7:75850391-75850410 None:intergenic 15.0%
!! AATGTTAAATTAAAGGATTT+AGG + Chr7:75850917-75850936 MsG0780040319.01.T01:intron 15.0%
!! TTATTATATTTGTATAGCTA+GGG + Chr7:75851319-75851338 MsG0780040319.01.T01:intron 15.0%
!!! AGTTTTCATTTTATTTTTAG+TGG + Chr7:75851927-75851946 MsG0780040319.01.T01:intron 15.0%
!!! ATATATTAATGACTTGTTTT+AGG + Chr7:75850396-75850415 MsG0780040319.01.T01:intron 15.0%
!!! TAAGTTATTTCTCTTTTTTT+TGG - Chr7:75850104-75850123 None:intergenic 15.0%
!!! TTTCATTCATCATATTTTTT+AGG - Chr7:75850610-75850629 None:intergenic 15.0%
!! AAAAAAAATGAACGGAAATA+TGG + Chr7:75851455-75851474 MsG0780040319.01.T01:intron 20.0%
!! AAATCGTAGAATATGTATAT+TGG + Chr7:75850189-75850208 MsG0780040319.01.T01:intron 20.0%
!! ATATGATACATAACATTTCA+AGG - Chr7:75852185-75852204 None:intergenic 20.0%
!! ATCTAAATCTACAAAATCAA+TGG - Chr7:75852829-75852848 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+CGG + Chr7:75852327-75852346 MsG0780040319.01.T01:intron 20.0%
!! CAAGTCATTAATATATAAGT+TGG - Chr7:75850392-75850411 None:intergenic 20.0%
!! CTTATTATATTTGTATAGCT+AGG + Chr7:75851318-75851337 MsG0780040319.01.T01:intron 20.0%
!! CTTTCGAATATATTTAGTTA+AGG - Chr7:75850643-75850662 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG - Chr7:75852311-75852330 None:intergenic 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG + Chr7:75851932-75851951 MsG0780040319.01.T01:intron 20.0%
!!! TCCTTTAATTTAACATTTAC+CGG - Chr7:75850914-75850933 None:intergenic 20.0%
! AAACTGAAAGTCAATAAAAG+CGG - Chr7:75849954-75849973 None:intergenic 25.0%
! AAATGGTATTAAGTAAAGCA+AGG - Chr7:75850889-75850908 None:intergenic 25.0%
! AATTTCTACGTGCAAAATAT+CGG + Chr7:75850804-75850823 MsG0780040319.01.T01:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG + Chr7:75852055-75852074 MsG0780040319.01.T01:CDS 25.0%
! CAAAATCAATGGAAAATGTT+TGG - Chr7:75852818-75852837 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG - Chr7:75851888-75851907 None:intergenic 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG - Chr7:75852095-75852114 None:intergenic 25.0%
! TGACATATTGTATTGAAGAA+GGG - Chr7:75851198-75851217 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG + Chr7:75852008-75852027 MsG0780040319.01.T01:intron 25.0%
! TTAGGAAAGAAACTCTTATA+CGG - Chr7:75850592-75850611 None:intergenic 25.0%
! TTGACATATTGTATTGAAGA+AGG - Chr7:75851199-75851218 None:intergenic 25.0%
! TTTACTTAATACCATTTAGC+CGG + Chr7:75850892-75850911 MsG0780040319.01.T01:intron 25.0%
!! GGTTAAAGTATCTTTGTATA+GGG + Chr7:75851263-75851282 MsG0780040319.01.T01:intron 25.0%
!! TGATTGAGATTAAGTTTTAC+CGG - Chr7:75850774-75850793 None:intergenic 25.0%
!! TGGTTAAAGTATCTTTGTAT+AGG + Chr7:75851262-75851281 MsG0780040319.01.T01:intron 25.0%
!!! AAATGTTATATGATCGGTTT+TGG + Chr7:75852333-75852352 MsG0780040319.01.T01:intron 25.0%
!!! ATTTCCGTTCATTTTTTTTG+TGG - Chr7:75851454-75851473 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG - Chr7:75852232-75852251 None:intergenic 25.0%
!!! TTCTACGATTTGTTTTTTCA+AGG - Chr7:75850180-75850199 None:intergenic 25.0%
!!! TTTAAGGGAAGCTTTTAATT+TGG - Chr7:75850853-75850872 None:intergenic 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG + Chr7:75852367-75852386 MsG0780040319.01.T01:intron 25.0%
AAATTCTGGATGAAATGCTT+CGG + Chr7:75850041-75850060 MsG0780040319.01.T01:intron 30.0%
AAGAGGGAGATAATTTAATG+AGG + Chr7:75851351-75851370 MsG0780040319.01.T01:intron 30.0%
ACACAAAGTTTAGTATATCG+TGG - Chr7:75852739-75852758 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG - Chr7:75852304-75852323 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG + Chr7:75851876-75851895 MsG0780040319.01.T01:CDS 30.0%
CCAACCACAAAAAAAATGAA+CGG + Chr7:75851447-75851466 MsG0780040319.01.T01:intron 30.0%
GATACATAACATTTCAAGGT+TGG - Chr7:75852181-75852200 None:intergenic 30.0%
GATTGAAACCTAAAGAAGAA+GGG - Chr7:75851600-75851619 None:intergenic 30.0%
GCCGGTAAATGTTAAATTAA+AGG + Chr7:75850910-75850929 MsG0780040319.01.T01:intron 30.0%
GTATTAAGTAAAGCAAGGAT+TGG - Chr7:75850884-75850903 None:intergenic 30.0%
GTTTCTTATAACCAACTTTC+CGG + Chr7:75850752-75850771 MsG0780040319.01.T01:intron 30.0%
TAATTCAGAGTTTCTTGTGA+TGG - Chr7:75850544-75850563 None:intergenic 30.0%
TACGGATATACATGCTAAAT+TGG - Chr7:75850574-75850593 None:intergenic 30.0%
! AATTTGGCTTCTATAGTAGT+GGG - Chr7:75850837-75850856 None:intergenic 30.0%
! ATGTCTCATTTCTGAGTTTT+AGG + Chr7:75850995-75851014 MsG0780040319.01.T01:intron 30.0%
! ATTAAGTTTTACCGGAAAGT+TGG - Chr7:75850766-75850785 None:intergenic 30.0%
! GAAAGATATTTCAGCAGTTT+TGG + Chr7:75852109-75852128 MsG0780040319.01.T01:CDS 30.0%
! GAAAGTTGGTTATAAGAAAC+TGG - Chr7:75850752-75850771 None:intergenic 30.0%
! TAATTTGGCTTCTATAGTAG+TGG - Chr7:75850838-75850857 None:intergenic 30.0%
! TTTAACATTTACCGGCTAAA+TGG - Chr7:75850906-75850925 None:intergenic 30.0%
!!! AGGATTGGTTAGGAATTTTA+AGG - Chr7:75850869-75850888 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG - Chr7:75851645-75851664 None:intergenic 30.0%
!!! CGTTCATTTTTTTTGTGGTT+GGG - Chr7:75851449-75851468 None:intergenic 30.0%
!!! GGATTGGTTAGGAATTTTAA+GGG - Chr7:75850868-75850887 None:intergenic 30.0%
!!! GTTCATTTTTTTTGTGGTTG+GGG - Chr7:75851448-75851467 None:intergenic 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG + Chr7:75851942-75851961 MsG0780040319.01.T01:intron 30.0%
AACTTAAGAAACGGTCCATT+AGG - Chr7:75852086-75852105 None:intergenic 35.0%
AATTCTGGATGAAATGCTTC+GGG + Chr7:75850042-75850061 MsG0780040319.01.T01:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG - Chr7:75852085-75852104 None:intergenic 35.0%
AGAAAGATCCTACCAACTTA+TGG + Chr7:75852423-75852442 MsG0780040319.01.T01:CDS 35.0%
AGCTAGGGACTAAATTAAAG+AGG + Chr7:75851334-75851353 MsG0780040319.01.T01:intron 35.0%
AGGAAAGAAGAAGATGAAGA+TGG - Chr7:75851530-75851549 None:intergenic 35.0%
AGTAAGACTGAGAAGATCTA+GGG + Chr7:75850504-75850523 MsG0780040319.01.T01:intron 35.0%
ATATGCTACAAGATGTTCTG+AGG - Chr7:75852584-75852603 None:intergenic 35.0%
ATGAGACATTGCTCTATTGT+TGG - Chr7:75850984-75851003 None:intergenic 35.0%
CACCATTATGCAAAACTCTT+GGG - Chr7:75850670-75850689 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG + Chr7:75851832-75851851 MsG0780040319.01.T01:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG - Chr7:75851835-75851854 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG + Chr7:75852652-75852671 MsG0780040319.01.T01:three_prime_UTR 35.0%
GAAAGATCCTACCAACTTAT+GGG + Chr7:75852424-75852443 MsG0780040319.01.T01:CDS 35.0%
GAAGCAGTGACTCTATTTAA+TGG + Chr7:75851751-75851770 MsG0780040319.01.T01:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG + Chr7:75852019-75852038 MsG0780040319.01.T01:intron 35.0%
GCTAGGGACTAAATTAAAGA+GGG + Chr7:75851335-75851354 MsG0780040319.01.T01:intron 35.0%
GGATTGAAACCTAAAGAAGA+AGG - Chr7:75851601-75851620 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG - Chr7:75851668-75851687 None:intergenic 35.0%
GTTATCCCGAAATTCAGTTT+CGG + Chr7:75849898-75849917 MsG0780040319.01.T01:CDS 35.0%
GTTTGAGAGTTTGGAAAGAA+GGG + Chr7:75851022-75851041 MsG0780040319.01.T01:intron 35.0%
TAGTAAGACTGAGAAGATCT+AGG + Chr7:75850503-75850522 MsG0780040319.01.T01:intron 35.0%
TCACCATTATGCAAAACTCT+TGG - Chr7:75850671-75850690 None:intergenic 35.0%
TGTAACTAAAACATGAGTGC+TGG - Chr7:75850473-75850492 None:intergenic 35.0%
TGTTTGAGAGTTTGGAAAGA+AGG + Chr7:75851021-75851040 MsG0780040319.01.T01:intron 35.0%
TTATCCCGAAATTCAGTTTC+GGG + Chr7:75849899-75849918 MsG0780040319.01.T01:CDS 35.0%
TTCACACCATTCATCATCTA+TGG + Chr7:75851496-75851515 MsG0780040319.01.T01:CDS 35.0%
TTTGAGAGTTTGGAAAGAAG+GGG + Chr7:75851023-75851042 MsG0780040319.01.T01:intron 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG - Chr7:75851486-75851505 None:intergenic 35.0%
! ATTTGGCTTCTATAGTAGTG+GGG - Chr7:75850836-75850855 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG - Chr7:75852655-75852674 None:intergenic 35.0%
! TGATGATGTTTGTGTTGCAA+TGG + Chr7:75852393-75852412 MsG0780040319.01.T01:CDS 35.0%
!! AAGTAAAGCAAGGATTGGTT+AGG - Chr7:75850879-75850898 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG + Chr7:75851668-75851687 MsG0780040319.01.T01:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG - Chr7:75852434-75852453 None:intergenic 35.0%
!! TGATTGGTTTAGCAAAGCAT+CGG + Chr7:75850015-75850034 MsG0780040319.01.T01:intron 35.0%
!! TTAGGCTTTGTTTGAGAGTT+TGG + Chr7:75851013-75851032 MsG0780040319.01.T01:intron 35.0%
!! TTGGTGTCAAAGGAAGTATT+GGG - Chr7:75850697-75850716 None:intergenic 35.0%
!! TTTGGTGTCAAAGGAAGTAT+TGG - Chr7:75850698-75850717 None:intergenic 35.0%
!!! CCGTTCATTTTTTTTGTGGT+TGG - Chr7:75851450-75851469 None:intergenic 35.0%
AAACCAATCACAATGCATGC+TGG - Chr7:75850005-75850024 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG - Chr7:75851589-75851608 None:intergenic 40.0%
AACCTAAAGAAGAAGGGATG+AGG - Chr7:75851594-75851613 None:intergenic 40.0%
AACTCCCCGAAACTGAATTT+CGG - Chr7:75849907-75849926 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG - Chr7:75851588-75851607 None:intergenic 40.0%
AGAAAGATGGAGTTCCCTAA+TGG + Chr7:75852068-75852087 MsG0780040319.01.T01:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG + Chr7:75851794-75851813 MsG0780040319.01.T01:CDS 40.0%
CAGCATATTCTCCCATAAGT+TGG - Chr7:75852438-75852457 None:intergenic 40.0%
CTCTCATCATGTGCTGTATT+TGG - Chr7:75850716-75850735 None:intergenic 40.0%
CTTGAGCAAGCATCTTTGAA+TGG + Chr7:75852697-75852716 MsG0780040319.01.T01:three_prime_UTR 40.0%
CTTTCTCATTTCAGCAGCAT+AGG - Chr7:75849868-75849887 None:intergenic 40.0%
GAAAGAAGGGGAGAAGATAT+AGG + Chr7:75851035-75851054 MsG0780040319.01.T01:intron 40.0%
GAAGAGCCATAGATGATGAA+TGG - Chr7:75851505-75851524 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG - Chr7:75851575-75851594 None:intergenic 40.0%
GAGGTATGGTAGATAGTTTG+AGG - Chr7:75851550-75851569 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG - Chr7:75851564-75851583 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG + Chr7:75851754-75851773 MsG0780040319.01.T01:CDS 40.0%
TACCTCATCCCTTCTTCTTT+AGG + Chr7:75851589-75851608 MsG0780040319.01.T01:CDS 40.0%
TATATCGTGGCTACTACTTC+AGG - Chr7:75852726-75852745 None:intergenic 40.0%
TATCCCGAAATTCAGTTTCG+GGG + Chr7:75849900-75849919 MsG0780040319.01.T01:CDS 40.0%
TGAGGTATGGGTGATAAAGT+TGG - Chr7:75851576-75851595 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG + Chr7:75852440-75852459 MsG0780040319.01.T01:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG + Chr7:75852026-75852045 MsG0780040319.01.T01:CDS 40.0%
! AAGGAGCTATGATGGAGTTA+GGG + Chr7:75852027-75852046 MsG0780040319.01.T01:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG + Chr7:75852466-75852485 MsG0780040319.01.T01:CDS 40.0%
! CTCCCAAGAGTTTTGCATAA+TGG + Chr7:75850665-75850684 MsG0780040319.01.T01:intron 40.0%
!! GATTGGTTTAGCAAAGCATC+GGG + Chr7:75850016-75850035 MsG0780040319.01.T01:intron 40.0%
!! TGGTGTCAAAGGAAGTATTG+GGG - Chr7:75850696-75850715 None:intergenic 40.0%
!! TGTGCTGTATTTGGTGTCAA+AGG - Chr7:75850707-75850726 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG - Chr7:75851634-75851653 None:intergenic 40.0%
!!! CATTTTTTTTGTGGTTGGGG+TGG - Chr7:75851445-75851464 None:intergenic 40.0%
AATCGTCAAGGATCACATGC+TGG + Chr7:75852664-75852683 MsG0780040319.01.T01:three_prime_UTR 45.0%
ACATTGTGTTCTGCCCTCAA+GGG + Chr7:75852506-75852525 MsG0780040319.01.T01:CDS 45.0%
ACTCCCCGAAACTGAATTTC+GGG - Chr7:75849906-75849925 None:intergenic 45.0%
ATCGTCAAGGATCACATGCT+GGG + Chr7:75852665-75852684 MsG0780040319.01.T01:three_prime_UTR 45.0%
CAGCTAACTCAATCTGTGTC+TGG - Chr7:75852145-75852164 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG - Chr7:75851812-75851831 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG + Chr7:75852439-75852458 MsG0780040319.01.T01:CDS 45.0%
GGAATACTGCAATGTGCAGT+TGG + Chr7:75851853-75851872 MsG0780040319.01.T01:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG + Chr7:75852505-75852524 MsG0780040319.01.T01:CDS 45.0%
TGGCATCATTAGACCCTTGA+GGG - Chr7:75852522-75852541 None:intergenic 45.0%
TGGGTGATAAAGTTGGGATG+AGG - Chr7:75851569-75851588 None:intergenic 45.0%
! AGGAGCTATGATGGAGTTAG+GGG + Chr7:75852028-75852047 MsG0780040319.01.T01:CDS 45.0%
! TCTGAGGTAGCATTAAGCCT+GGG - Chr7:75852568-75852587 None:intergenic 45.0%
!! CAAAGCATCGGGACAAATTC+TGG + Chr7:75850027-75850046 MsG0780040319.01.T01:intron 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG - Chr7:75851622-75851641 None:intergenic 45.0%
!! TTCTGAGGTAGCATTAAGCC+TGG - Chr7:75852569-75852588 None:intergenic 45.0%
!!! GTTACCCACTACCCCTTTTT+TGG + Chr7:75849975-75849994 MsG0780040319.01.T01:intron 45.0%
ATGATGCCACTGAAGCTCCA+AGG + Chr7:75852533-75852552 MsG0780040319.01.T01:CDS 50.0%
ATGCTGGCCCACCAAAAAAG+GGG - Chr7:75849989-75850008 None:intergenic 50.0%
CATGCTGGCCCACCAAAAAA+GGG - Chr7:75849990-75850009 None:intergenic 50.0%
CCCACCAAAAAAGGGGTAGT+GGG - Chr7:75849982-75850001 None:intergenic 50.0%
GCTCTGTGCATAACACAGTC+GGG - Chr7:75849932-75849951 None:intergenic 50.0%
GCTCTTCAGCATTGTGCCAA+AGG - Chr7:75851813-75851832 None:intergenic 50.0%
GGCTCTGTGCATAACACAGT+CGG - Chr7:75849933-75849952 None:intergenic 50.0%
GTGGCATCATTAGACCCTTG+AGG - Chr7:75852523-75852542 None:intergenic 50.0%
TGATGCCACTGAAGCTCCAA+GGG + Chr7:75852534-75852553 MsG0780040319.01.T01:CDS 50.0%
! AGCTATGATGGAGTTAGGGG+AGG + Chr7:75852031-75852050 MsG0780040319.01.T01:CDS 50.0%
! GCTATGATGGAGTTAGGGGA+GGG + Chr7:75852032-75852051 MsG0780040319.01.T01:CDS 50.0%
!!! ACCCACTACCCCTTTTTTGG+TGG + Chr7:75849978-75849997 MsG0780040319.01.T01:intron 50.0%
!!! CCCACTACCCCTTTTTTGGT+GGG + Chr7:75849979-75849998 MsG0780040319.01.T01:intron 50.0%
CTTTGCCCTTGGAGCTTCAG+TGG - Chr7:75852542-75852561 None:intergenic 55.0%
GCATGCTGGCCCACCAAAAA+AGG - Chr7:75849991-75850010 None:intergenic 55.0%
GCCCACCAAAAAAGGGGTAG+TGG - Chr7:75849983-75850002 None:intergenic 55.0%
GGGCCAGCATGCATTGTGAT+TGG + Chr7:75849999-75850018 MsG0780040319.01.T01:intron 55.0%
AGCCTGGGAAGCTTTGCCCT+TGG - Chr7:75852553-75852572 None:intergenic 60.0%
CTCCAAGGGCAAAGCTTCCC+AGG + Chr7:75852548-75852567 MsG0780040319.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 75849846 75852881 75849846 ID=MsG0780040319.01;Name=MsG0780040319.01
Chr7 mRNA 75849846 75852881 75849846 ID=MsG0780040319.01.T01;Parent=MsG0780040319.01;Name=MsG0780040319.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0.66|0.5|0.75|0.66|0.5|4|266|291
Chr7 exon 75849846 75849935 75849846 ID=MsG0780040319.01.T01:exon:14871;Parent=MsG0780040319.01.T01
Chr7 exon 75851487 75851897 75851487 ID=MsG0780040319.01.T01:exon:14872;Parent=MsG0780040319.01.T01
Chr7 exon 75852020 75852167 75852020 ID=MsG0780040319.01.T01:exon:14873;Parent=MsG0780040319.01.T01
Chr7 exon 75852389 75852881 75852389 ID=MsG0780040319.01.T01:exon:14874;Parent=MsG0780040319.01.T01
Chr7 CDS 75849846 75849935 75849846 ID=MsG0780040319.01.T01:cds;Parent=MsG0780040319.01.T01
Chr7 CDS 75851487 75851897 75851487 ID=MsG0780040319.01.T01:cds;Parent=MsG0780040319.01.T01
Chr7 CDS 75852020 75852167 75852020 ID=MsG0780040319.01.T01:cds;Parent=MsG0780040319.01.T01
Chr7 CDS 75852389 75852615 75852389 ID=MsG0780040319.01.T01:cds;Parent=MsG0780040319.01.T01
Chr7 three_prime_UTR 75852616 75852881 75852616 ID=MsG0780040319.01.T01:three_prime_utr;Parent=MsG0780040319.01.T01
Gene Sequence

>MsG0780040319.01.T01

ATGCGCTCTTACGAAGTGGCCTATGCTGCTGAAATGAGAAAGAATATTGCTAGTTATCCCGAAATTCAGTTTCGGGGAGTTATCCCGACTAGAAAACTTTTCACACCATTCATCATCTATGGCTCTTCTTCCATCTTCATCTTCTTCTTTCCTCAAACTATCTACCATACCTCATCCCAACTTTATCACCCATACCTCATCCCTTCTTCTTTAGGTTTCAATCCAGTGACTTATCCAAAGCAGCACCTGAATTTCAAAAGCAACAACTCCAAGCTCTTTGTTGTTTCATACAGGTATTTCACTAAAGAAGAAGACGAAGAAGACGACGAAGAAGAAGAAGAGCACAACTTTGATGAAGCAGTGACTCTATTTAATGGTGGAGAGTACTACAAATGTCATGACTATCTTGAGTCCCTTTGGCACAATGCTGAAGAGCCATCAAGAACACTAATTCATGGAATACTGCAATGTGCAGTTGGATTTCATCACCTATTCAATCAGAATCATAAAGGAGCTATGATGGAGTTAGGGGAGGGACTATGTAAATTGAGAAAGATGGAGTTCCCTAATGGACCGTTTCTTAAGTTTGAGAAAGATATTTCAGCAGTTTTGGAATTTATCTACCAGACACAGATTGAGTTAGCTGCATGTAGTGATGATGTTTGTGTTGCAATGGATCAATCAGAAAGATCCTACCAACTTATGGGAGAATATGCTGCAGGGAAGCGCGTATATGATCTAGAACTTGGTCGTGATGCATCAGTGTACATTGTGTTCTGCCCTCAAGGGTCTAATGATGCCACTGAAGCTCCAAGGGCAAAGCTTCCCAGGCTTAATGCTACCTCAGAACATCTTGTAGCATATGAATACAAGTAA

Protein sequence

>MsG0780040319.01.T01

MRSYEVAYAAEMRKNIASYPEIQFRGVIPTRKLFTPFIIYGSSSIFIFFFPQTIYHTSSQLYHPYLIPSSLGFNPVTYPKQHLNFKSNNSKLFVVSYRYFTKEEDEEDDEEEEEHNFDEAVTLFNGGEYYKCHDYLESLWHNAEEPSRTLIHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKMEFPNGPFLKFEKDISAVLEFIYQTQIELAACSDDVCVAMDQSERSYQLMGEYAAGKRVYDLELGRDASVYIVFCPQGSNDATEAPRAKLPRLNATSEHLVAYEYK*