AlfalfaGEDB | MsG0380014411.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014411.01

KEGG: K15637
GO: -
PFAM: PF00300

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014411.01.T01	KEH36547.1	99.206	126	1	0	1	126	48	173	1.28E-85	257

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014411.01.T01	Q9FNJ9	46.296	108	57	1	17	123	31	138	2.29E-26	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014411.01.T01	A0A072V3Y1	99.206	126	1	0	1	126	48	173	6.11e-86	257

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048528.01	MsG0380014411.01	0.867227	1.598346e-65	5.538732e-62
MsG0080048776.01	MsG0380014411.01	0.858139	1.011132e-62	2.554842e-59
MsG0080048801.01	MsG0380014411.01	0.820288	7.424723e-53	5.850331e-50
MsG0080048845.01	MsG0380014411.01	0.841236	5.369990e-58	7.840084e-55
MsG0080048887.01	MsG0380014411.01	0.805366	1.381874e-49	7.297458e-47
MsG0080048900.01	MsG0380014411.01	0.817857	2.652997e-52	1.954385e-49
MsG0080048909.01	MsG0380014411.01	0.856135	3.947060e-62	9.326149e-59
MsG0080048925.01	MsG0380014411.01	0.826265	2.981985e-54	2.782821e-51
MsG0080048929.01	MsG0380014411.01	0.812796	3.540644e-51	2.272315e-48
MsG0080048969.01	MsG0380014411.01	0.834434	3.003431e-56	3.564049e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014411.01.T01	MTR_2g013570	99.206	126	1	1	126	48	173	1.55e-89	257
MsG0380014411.01.T01	MTR_2g013570	99.200	125	1	1	125	48	172	5.61e-87	253
MsG0380014411.01.T01	MTR_2g013570	99.200	125	1	1	125	48	172	2.78e-86	253
MsG0380014411.01.T01	MTR_6g007350	91.379	116	10	2	117	6	121	6.16e-73	213
MsG0380014411.01.T01	MTR_7g446330	91.379	116	10	2	117	22	137	6.29e-73	214
MsG0380014411.01.T01	MTR_4g055260	53.261	92	43	32	123	64	155	5.99e-27	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014411.01.T01	AT5G22620	46.296	108	57	1	17	123	31	138	2.08e-27	105
MsG0380014411.01.T01	AT5G22620	46.296	108	57	1	17	123	31	138	2.33e-27	105
MsG0380014411.01.T01	AT5G22620	46.296	108	57	1	17	123	31	138	2.33e-27	105
MsG0380014411.01.T01	AT5G22620	46.296	108	57	1	17	123	31	138	2.33e-27	105
MsG0380014411.01.T01	AT5G22620	46.296	108	57	1	17	123	31	138	2.33e-27	105
MsG0380014411.01.T01	AT5G22620	46.296	108	57	1	17	123	31	138	2.33e-27	105

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Find 15 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTCCAATATCTCATGCCA+AGG	0.637851	3:+54350679	MsG0380014411.01.T01:CDS
ACTGCTGAAATTATATGGCA+AGG	0.595942	3:+54350793	MsG0380014411.01.T01:CDS
AGAGAGATGCAAGAAAGCTT+TGG	0.489851	3:+54350628	MsG0380014411.01.T01:CDS
AGCAAACTGCTGAAATTATA+TGG	0.326556	3:+54350788	MsG0380014411.01.T01:intron
AGTGAATCAATGTAAACCAA+TGG	0.532237	3:-54350826	None:intergenic
AGTGCTAACTGAAGCTGGGG+TGG	0.572554	3:+54350598	MsG0380014411.01.T01:CDS
ATATCTCTCTATCACCTTGA+AGG	0.451579	3:+54350856	MsG0380014411.01.T01:CDS
ATATTGGACTTGCAAGACAT+TGG	0.570535	3:-54350667	None:intergenic
CTAACCTTGGCATGAGATAT+TGG	0.357117	3:-54350683	None:intergenic
GAATGCAGAAAGTAGGATTC+AGG	0.399022	3:+54349960	MsG0380014411.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCAAACTGCTGAAATTATA+TGG	+	Chr3:54350788-54350807	MsG0380014411.01.T01:intron	30.0%
AGTGAATCAATGTAAACCAA+TGG	-	Chr3:54350829-54350848	None:intergenic	30.0%
TCGAGAATTAAATTTCACTG+TGG	-	Chr3:54350710-54350729	None:intergenic	30.0%
TGGTAAAAGTAGGAGATAAT+GGG	-	Chr3:54350455-54350474	None:intergenic	30.0%
TTGGTAAAAGTAGGAGATAA+TGG	-	Chr3:54350456-54350475	None:intergenic	30.0%
ACTGCTGAAATTATATGGCA+AGG	+	Chr3:54350793-54350812	MsG0380014411.01.T01:CDS	35.0%
AGCTTACCAAAAACGCTATA+AGG	-	Chr3:54350215-54350234	None:intergenic	35.0%
ATATCTCTCTATCACCTTGA+AGG	+	Chr3:54350856-54350875	MsG0380014411.01.T01:CDS	35.0%
ATATTGGACTTGCAAGACAT+TGG	-	Chr3:54350670-54350689	None:intergenic	35.0%
ATCGATGAAGGATTTCATGA+TGG	-	Chr3:54350494-54350513	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	54349826	54350915	54349826	ID=MsG0380014411.01;Name=MsG0380014411.01
Chr3	mRNA	54349826	54350915	54349826	ID=MsG0380014411.01.T01;Parent=MsG0380014411.01;Name=MsG0380014411.01.T01;_AED=0.08;_eAED=0.08;_QI=0\|0\|0\|1\|0.5\|0.66\|3\|0\|133
Chr3	exon	54349826	54349981	54349826	ID=MsG0380014411.01.T01:exon:10925;Parent=MsG0380014411.01.T01
Chr3	exon	54350581	54350700	54350581	ID=MsG0380014411.01.T01:exon:10926;Parent=MsG0380014411.01.T01
Chr3	exon	54350790	54350915	54350790	ID=MsG0380014411.01.T01:exon:10927;Parent=MsG0380014411.01.T01
Chr3	CDS	54349826	54349981	54349826	ID=MsG0380014411.01.T01:cds;Parent=MsG0380014411.01.T01
Chr3	CDS	54350581	54350700	54350581	ID=MsG0380014411.01.T01:cds;Parent=MsG0380014411.01.T01
Chr3	CDS	54350790	54350915	54350790	ID=MsG0380014411.01.T01:cds;Parent=MsG0380014411.01.T01

Gene Sequence

>MsG0380014411.01.T01

AAACTTCCAAATAGTATTGATTTTTCTGTAACTGGTGGTGCATATGATTTCACAAAAGCAACAACATCACTAACAAATGAGTTAATCACTTCATCAAAGAAAGTCACTCTTTTAAGGCATGGTCTTAGCACTTGGAATGCAGAAAGTAGGATTCAGGGAAGCTCAGATTTGTCAGTGCTAACTGAAGCTGGGGTGGAGCAAGCAGAGAGATGCAAGAAAGCTTTGGAAAATATTCACTTTGACCAATGTCTTGCAAGTCCAATATCTCATGCCAAGCAAACTGCTGAAATTATATGGCAAGGAAGAGAAAAACCATTGGTTTACATTGATTCACTTAAAGAAATATCTCTCTATCACCTTGAAGGATTGAAAAATGGTGAGCCTATCTCTGCTCAACTTTAA

Protein sequence

>MsG0380014411.01.T01

KLPNSIDFSVTGGAYDFTKATTSLTNELITSSKKVTLLRHGLSTWNAESRIQGSSDLSVLTEAGVEQAERCKKALENIHFDQCLASPISHAKQTAEIIWQGREKPLVYIDSLKEISLYHLEGLKNGEPISAQL*