AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040080.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040080.01.T01 MTR_7g084300 99.744 391 1 0 1 391 1 391 0.0 810
MsG0780040080.01.T01 MTR_3g083910 83.979 387 62 0 1 387 1 387 0.0 695
MsG0780040080.01.T01 MTR_3g083920 82.171 387 69 0 1 387 1 387 0.0 681
MsG0780040080.01.T01 MTR_5g007713 80.463 389 76 0 1 389 1 389 0.0 676
MsG0780040080.01.T01 MTR_5g007730 80.463 389 76 0 1 389 1 389 0.0 674
MsG0780040080.01.T01 MTR_5g007717 79.949 389 78 0 1 389 1 389 0.0 674
MsG0780040080.01.T01 MTR_7g016700 80.463 389 76 0 1 389 1 389 0.0 673
MsG0780040080.01.T01 MTR_1g098140 80.206 389 77 0 1 389 1 389 0.0 673
MsG0780040080.01.T01 MTR_7g016820 80.206 389 77 0 1 389 1 389 0.0 671
MsG0780040080.01.T01 MTR_7g016800 80.206 389 77 0 1 389 1 389 0.0 671
MsG0780040080.01.T01 MTR_7g016720 80.463 389 76 0 1 389 1 389 0.0 671
MsG0780040080.01.T01 MTR_1g097935 79.949 389 78 0 1 389 1 389 0.0 670
MsG0780040080.01.T01 MTR_1g097910 79.692 389 79 0 1 389 1 389 0.0 669
MsG0780040080.01.T01 MTR_7g016780 79.949 389 78 0 1 389 1 389 0.0 669
MsG0780040080.01.T01 MTR_5g007760 79.692 389 79 0 1 389 1 389 0.0 667
MsG0780040080.01.T01 MTR_2g058470 74.807 389 98 0 1 389 1 389 0.0 635
MsG0780040080.01.T01 MTR_3g086260 76.227 387 92 0 1 387 1 387 0.0 625
MsG0780040080.01.T01 MTR_3g088675 70.951 389 113 0 1 389 1 389 0.0 610
MsG0780040080.01.T01 MTR_7g113405 81.518 303 56 0 87 389 1 303 0.0 522
MsG0780040080.01.T01 MTR_5g007740 72.086 326 91 0 64 389 1 326 3.15e-177 496
MsG0780040080.01.T01 MTR_5g007723 59.900 399 107 5 12 389 32 398 9.19e-168 475
MsG0780040080.01.T01 MTR_5g007770 69.000 300 60 2 70 369 1 267 2.05e-147 418
MsG0780040080.01.T01 MTR_3g088670 51.414 389 175 7 10 387 2 387 2.28e-135 392
MsG0780040080.01.T01 MTR_4g075560 41.842 380 214 4 11 387 13 388 7.74e-101 305
MsG0780040080.01.T01 MTR_4g078730 40.214 373 216 2 15 387 24 389 3.93e-95 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040080.01.T01 AT5G13930 85.825 388 54 1 3 389 8 395 0.0 704
MsG0780040080.01.T01 AT4G34850 40.576 382 222 4 11 389 13 392 1.12e-99 301
MsG0780040080.01.T01 AT4G00040 40.051 392 223 6 1 387 1 385 8.26e-96 291
MsG0780040080.01.T01 AT1G02050 40.267 375 216 4 15 387 24 392 2.09e-87 270
MsG0780040080.01.T01 AT4G34850 40.625 320 187 2 72 389 1 319 2.59e-84 259

Find 102 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACGACGTGGGTGATTT+TGG 0.156020 7:+72836245 None:intergenic
TTAAGAGTAGTAGGAGAATT+TGG 0.190925 7:+72837298 None:intergenic
GTGATTGGAATTCGATCTTT+TGG 0.212747 7:-72835732 MsG0780040080.01.T01:CDS
CCTGCCACTATCTTGGCTTT+TGG 0.245277 7:-72837149 MsG0780040080.01.T01:CDS
GAGAATTTGGAAGGGGAATC+AGG 0.263217 7:+72837311 None:intergenic
GCTTCATAGTGTTCCGGTTC+AGG 0.269901 7:-72835461 MsG0780040080.01.T01:CDS
CGGCACGTGCTTAGTGAATA+TGG 0.281747 7:-72835628 MsG0780040080.01.T01:CDS
GCAGCATCTTTACCTAGTTT+TGG 0.289075 7:+72836303 None:intergenic
TTTGGTGAGTTAAGAGTAGT+AGG 0.294423 7:+72837289 None:intergenic
GTTGAATTTGATTGATAGAT+TGG 0.303903 7:-72835438 MsG0780040080.01.T01:exon
CAATGGCCCTGCCACTATCT+TGG 0.318921 7:-72837156 MsG0780040080.01.T01:CDS
CACCAATTGGAATAAGTGAT+TGG 0.330161 7:-72835747 MsG0780040080.01.T01:CDS
TGAAATGAGGAGGAGGTCTA+AGG 0.338990 7:-72835569 MsG0780040080.01.T01:CDS
CATCTTCTGAAAGATGTTCC+TGG 0.351109 7:-72835814 MsG0780040080.01.T01:CDS
CTCGTTGGACAGGCGCTCTT+CGG 0.353383 7:-72835985 MsG0780040080.01.T01:CDS
AAAGAATATTGAGAAGAGTT+TGG 0.355350 7:-72835782 MsG0780040080.01.T01:CDS
TATCAACTCACCAAACTCTT+AGG 0.369573 7:-72836186 MsG0780040080.01.T01:CDS
TTCCAATCACTTATTCCAAT+TGG 0.375548 7:+72835745 None:intergenic
TCAATCGCGCCATCAGAATC+AGG 0.381505 7:+72835868 None:intergenic
GTGGAGAATAACTAGCTAGA+AGG 0.397326 7:+72837221 None:intergenic
GGACGCTCAACAGTTAAATC+TGG 0.401577 7:+72835928 None:intergenic
AACCGGTGAAGGGTTGGAAT+GGG 0.403113 7:-72835530 MsG0780040080.01.T01:CDS
GAGTTTGGTGAGTTGATAAT+CGG 0.403722 7:+72836191 None:intergenic
TGTTGATTTGGTGGATTCAA+TGG 0.407020 7:+72837344 None:intergenic
GCCATGTATGCACACATGTT+TGG 0.410756 7:+72836369 None:intergenic
CTTCATAGTGTTCCGGTTCA+GGG 0.420668 7:-72835460 MsG0780040080.01.T01:CDS
GTGATACGAAAGTAGTAATC+AGG 0.424244 7:+72837086 None:intergenic
TTGAATTTGATTGATAGATT+GGG 0.433062 7:-72835437 MsG0780040080.01.T01:exon
GGAGCCGCAGCAATGATTAT+TGG 0.433257 7:-72835958 MsG0780040080.01.T01:CDS
TGAGCACATGACTGATCTTA+AGG 0.436892 7:-72837057 MsG0780040080.01.T01:CDS
ATCTTCTGAAAGATGTTCCT+GGG 0.439500 7:-72835813 MsG0780040080.01.T01:CDS
GACGGACATCTCCGTGAAGT+TGG 0.457012 7:-72835847 MsG0780040080.01.T01:CDS
AATCAAATTCAACCCTGAAC+CGG 0.458714 7:+72835448 None:intergenic
GAGTAGTAGGAGAATTTGGA+AGG 0.458833 7:+72837302 None:intergenic
TTTAGATTCACTCGTTGGAC+AGG 0.469363 7:-72835995 MsG0780040080.01.T01:CDS
CAAGATAGTGGCAGGGCCAT+TGG 0.473281 7:+72837157 None:intergenic
TCCAAACATGTGTGCATACA+TGG 0.477319 7:-72836370 MsG0780040080.01.T01:CDS
ACGGACATCTCCGTGAAGTT+GGG 0.481534 7:-72835846 MsG0780040080.01.T01:CDS
GTTGATTTGGTGGATTCAAT+GGG 0.481707 7:+72837345 None:intergenic
CAACCGGTGAAGGGTTGGAA+TGG 0.481930 7:-72835531 MsG0780040080.01.T01:CDS
AGTTGTGCTTCATAGTGTTC+CGG 0.482444 7:-72835467 MsG0780040080.01.T01:CDS
CCAAAAGCCAAGATAGTGGC+AGG 0.486045 7:+72837149 None:intergenic
GATTCTGATGGCGCGATTGA+CGG 0.486855 7:-72835865 MsG0780040080.01.T01:CDS
TGGTTGACCCCATTCAGCTA+TGG 0.487613 7:+72836272 None:intergenic
AGGAGGAGGTCTAAGGAGGA+AGG 0.493756 7:-72835562 MsG0780040080.01.T01:CDS
TATCAACAAGGTTGTTTCGC+AGG 0.495275 7:-72836132 MsG0780040080.01.T01:CDS
GGACAGGCGCTCTTCGGTGA+TGG 0.496787 7:-72835979 MsG0780040080.01.T01:CDS
GAAAAGTGAGCCCAACTTCA+CGG 0.497109 7:+72835836 None:intergenic
GAACTAAGAACGAACTCTAA+AGG 0.499796 7:-72835388 MsG0780040080.01.T01:three_prime_UTR
GAGGAAGGAAAGATTACAAC+CGG 0.506324 7:-72835547 MsG0780040080.01.T01:CDS
ATATTCTTTGAGATAATCCC+AGG 0.507044 7:+72835796 None:intergenic
TCTAAAATAGCCGGTCCACC+TGG 0.512147 7:+72835700 None:intergenic
ACTCATTTAGATTCACTCGT+TGG 0.521614 7:-72836000 MsG0780040080.01.T01:CDS
ATCATGAGACGTTTGACAGA+TGG 0.524120 7:+72836156 None:intergenic
GTAGTAGGAGAATTTGGAAG+GGG 0.530349 7:+72837304 None:intergenic
AGTAGTAGGAGAATTTGGAA+GGG 0.532439 7:+72837303 None:intergenic
GATTACAACCGGTGAAGGGT+TGG 0.533434 7:-72835536 MsG0780040080.01.T01:CDS
GGAAAGATTACAACCGGTGA+AGG 0.534145 7:-72835541 MsG0780040080.01.T01:CDS
ACCCCATTCCAACCCTTCAC+CGG 0.535927 7:+72835528 None:intergenic
AATGAGGAGGAGGTCTAAGG+AGG 0.537242 7:-72835566 MsG0780040080.01.T01:CDS
GGTTGCACATCCAGGTGGAC+CGG 0.539349 7:-72835710 MsG0780040080.01.T01:CDS
ACTATTCTTCCTGATTCTGA+TGG 0.542108 7:-72835877 MsG0780040080.01.T01:CDS
TAAGCACGTGCCGAGTGGAC+CGG 0.545653 7:+72835638 None:intergenic
GGAGTTTCTCCTCCTTAAGC+CGG 0.547544 7:+72835659 None:intergenic
CTCCACAGTCACCATTGTTG+TGG 0.551221 7:+72837202 None:intergenic
TCAACCTGATCTAAAATAGC+CGG 0.554363 7:+72835691 None:intergenic
AGACGCAAGACAAGACTTAG+TGG 0.555722 7:-72836337 MsG0780040080.01.T01:CDS
ACTTCTGGTGTAGACATGCC+TGG 0.557592 7:-72836216 MsG0780040080.01.T01:CDS
TCTTGTCTTGCGTCTAGTGA+TGG 0.563143 7:+72836345 None:intergenic
CGCAGCAATGATTATTGGTG+CGG 0.566927 7:-72835953 MsG0780040080.01.T01:CDS
AGTGCCAAAAGCCAAGATAG+TGG 0.568559 7:+72837145 None:intergenic
TGGAGAATAACTAGCTAGAA+GGG 0.570353 7:+72837222 None:intergenic
ATCACCGCAGTTACTTTCCG+TGG 0.575314 7:-72836033 MsG0780040080.01.T01:CDS
CGTAAGGCTCAACGTTCCAA+TGG 0.577215 7:-72837173 MsG0780040080.01.T01:CDS
GTGAGTTGATAATCGGCACC+AGG 0.578548 7:+72836198 None:intergenic
CAGCAAGATCTTTCGCTAAG+CGG 0.579250 7:+72836097 None:intergenic
ATCAGTCATGTGCTCACTGT+TGG 0.589052 7:+72837064 None:intergenic
AGGAGAAACTCCGGTCCACT+CGG 0.589454 7:-72835648 MsG0780040080.01.T01:CDS
GACTGTGGAGGAGATTCGTA+AGG 0.593868 7:-72837189 MsG0780040080.01.T01:CDS
AGTTACACAGTGAGAAGGAG+TGG 0.595844 7:+72837121 None:intergenic
GCTTGAGTTACACAGTGAGA+AGG 0.600695 7:+72837116 None:intergenic
ATGAAGCACAACTGTCTCAA+CGG 0.606270 7:+72835477 None:intergenic
AGGCATGTCTACACCAGAAG+TGG 0.609662 7:+72836218 None:intergenic
CGCACCAATAATCATTGCTG+CGG 0.611377 7:+72835954 None:intergenic
GTAGTTGAAGTACCAAAACT+AGG 0.617174 7:-72836315 MsG0780040080.01.T01:CDS
ACCGGTGAAGGGTTGGAATG+GGG 0.617268 7:-72835529 MsG0780040080.01.T01:CDS
CAACAAGGTTGTTTCGCAGG+CGG 0.618278 7:-72836129 MsG0780040080.01.T01:CDS
CTAGTTATTCTCCACAACAA+TGG 0.620212 7:-72837213 MsG0780040080.01.T01:exon
TTCACTAAGCACGTGCCGAG+TGG 0.624156 7:+72835633 None:intergenic
GGCTTAAGGAGGAGAAACTC+CGG 0.626456 7:-72835657 MsG0780040080.01.T01:CDS
CGTCTCATGATGTATCAACA+AGG 0.629069 7:-72836144 MsG0780040080.01.T01:CDS
CTCCACAACAATGGTGACTG+TGG 0.635767 7:-72837204 MsG0780040080.01.T01:exon
GAAAGATTACAACCGGTGAA+GGG 0.636251 7:-72835540 MsG0780040080.01.T01:CDS
AATGAGTATCTGACGGACCA+CGG 0.637807 7:+72836016 None:intergenic
GAATCTAAATGAGTATCTGA+CGG 0.648038 7:+72836009 None:intergenic
CACAACAATGGTGACTGTGG+AGG 0.652306 7:-72837201 MsG0780040080.01.T01:exon
ACTGTCTCAACGGTTAAACC+CGG 0.657521 7:+72835487 None:intergenic
CAAAAGCCAAGATAGTGGCA+GGG 0.697505 7:+72837150 None:intergenic
TTGATTTGGTGGATTCAATG+GGG 0.698657 7:+72837346 None:intergenic
AAGTGGTGCAGAAAACGACG+TGG 0.725684 7:+72836235 None:intergenic
AGTGGTGCAGAAAACGACGT+GGG 0.729631 7:+72836236 None:intergenic
CGGACCACGGAAAGTAACTG+CGG 0.768994 7:+72836029 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATCAAAAATATATTTAT+AGG - Chr7:72835194-72835213 MsG0780040080.01.T01:three_prime_UTR 10.0%
!!! CTATAAATATATTTTTGATA+TGG + Chr7:72835196-72835215 None:intergenic 10.0%
!! GATCATTATACTAATAATTA+CGG + Chr7:72835894-72835913 None:intergenic 15.0%
!! TTATAACAAAAAATGAGATT+TGG + Chr7:72835305-72835324 None:intergenic 15.0%
!!! ATGATTTATTTATTTTTGAG+AGG - Chr7:72837256-72837275 MsG0780040080.01.T01:five_prime_UTR 15.0%
!!! GGATTTTTTTAAAATGTTAT+TGG + Chr7:72835873-72835892 None:intergenic 15.0%
!! TTGAATTTGATTGATAGATT+GGG - Chr7:72837136-72837155 MsG0780040080.01.T01:CDS 20.0%
!!! ATCTCTTGTATTTTTCTTTT+TGG - Chr7:72836091-72836110 MsG0780040080.01.T01:CDS 20.0%
! AAAATGTAACCATTACATCA+AGG + Chr7:72836044-72836063 None:intergenic 25.0%
! AAAGAATATTGAGAAGAGTT+TGG - Chr7:72836791-72836810 MsG0780040080.01.T01:intron 25.0%
! GTTGAATTTGATTGATAGAT+TGG - Chr7:72837135-72837154 MsG0780040080.01.T01:CDS 25.0%
! TCAAAAATTGTGACATGAAA+AGG + Chr7:72835960-72835979 None:intergenic 25.0%
!! TAATTCACAACAAAAAGTGT+CGG + Chr7:72835675-72835694 None:intergenic 25.0%
!!! ATAGATTATAGCTGTTTTTG+AGG - Chr7:72835631-72835650 MsG0780040080.01.T01:CDS 25.0%
!!! CTAAACTTTTTGCTTTTTTC+AGG - Chr7:72836120-72836139 MsG0780040080.01.T01:CDS 25.0%
!!! GGTTTTTAGTATTGTTGATT+TGG + Chr7:72835244-72835263 None:intergenic 25.0%
!!! TGCTTGTGTTTTGTTTATTT+TGG - Chr7:72836980-72836999 MsG0780040080.01.T01:intron 25.0%
!!! TGTTTATTTTGGATGAAATG+AGG - Chr7:72836991-72837010 MsG0780040080.01.T01:intron 25.0%
!!! TTTTAGTATTGTTGATTTGG+TGG + Chr7:72835241-72835260 None:intergenic 25.0%
AAAAAAAGCCATAGCTGAAT+GGG - Chr7:72836293-72836312 MsG0780040080.01.T01:CDS 30.0%
CATCAAAAACCTTGATGTAA+TGG - Chr7:72836032-72836051 MsG0780040080.01.T01:CDS 30.0%
GAATCTAAATGAGTATCTGA+CGG + Chr7:72836567-72836586 None:intergenic 30.0%
TGATGAGTATGACTAAAAAC+TGG + Chr7:72835933-72835952 None:intergenic 30.0%
TTAAGAGTAGTAGGAGAATT+TGG + Chr7:72835278-72835297 None:intergenic 30.0%
TTCCAATCACTTATTCCAAT+TGG + Chr7:72836831-72836850 None:intergenic 30.0%
! TGATTGGAATTCGATCTTTT+GGG - Chr7:72836842-72836861 MsG0780040080.01.T01:intron 30.0%
!! ATATTCTTTGAGATAATCCC+AGG + Chr7:72836780-72836799 None:intergenic 30.0%
!!! TTATTTTGGATGAAATGAGG+AGG - Chr7:72836994-72837013 MsG0780040080.01.T01:intron 30.0%
AAAAAAGCCATAGCTGAATG+GGG - Chr7:72836294-72836313 MsG0780040080.01.T01:CDS 35.0%
AATCAAATTCAACCCTGAAC+CGG + Chr7:72837128-72837147 None:intergenic 35.0%
ACTATTCTTCCTGATTCTGA+TGG - Chr7:72836696-72836715 MsG0780040080.01.T01:intron 35.0%
ACTCATTTAGATTCACTCGT+TGG - Chr7:72836573-72836592 MsG0780040080.01.T01:intron 35.0%
AGTAGTAGGAGAATTTGGAA+GGG + Chr7:72835273-72835292 None:intergenic 35.0%
CAAAAAAAGCCATAGCTGAA+TGG - Chr7:72836292-72836311 MsG0780040080.01.T01:CDS 35.0%
CACCAATTGGAATAAGTGAT+TGG - Chr7:72836826-72836845 MsG0780040080.01.T01:intron 35.0%
CTAGTTATTCTCCACAACAA+TGG - Chr7:72835360-72835379 MsG0780040080.01.T01:three_prime_UTR 35.0%
GAACTAAGAACGAACTCTAA+AGG - Chr7:72837185-72837204 MsG0780040080.01.T01:CDS 35.0%
GTGATACGAAAGTAGTAATC+AGG + Chr7:72835490-72835509 None:intergenic 35.0%
TATCAACTCACCAAACTCTT+AGG - Chr7:72836387-72836406 MsG0780040080.01.T01:CDS 35.0%
TGGAGAATAACTAGCTAGAA+GGG + Chr7:72835354-72835373 None:intergenic 35.0%
TTTGGTGAGTTAAGAGTAGT+AGG + Chr7:72835287-72835306 None:intergenic 35.0%
! ATCTTCTGAAAGATGTTCCT+GGG - Chr7:72836760-72836779 MsG0780040080.01.T01:intron 35.0%
! GTAGTTGAAGTACCAAAACT+AGG - Chr7:72836258-72836277 MsG0780040080.01.T01:CDS 35.0%
! GTGATTGGAATTCGATCTTT+TGG - Chr7:72836841-72836860 MsG0780040080.01.T01:intron 35.0%
! TCAACCTGATCTAAAATAGC+CGG + Chr7:72836885-72836904 None:intergenic 35.0%
!! AAAAAGTGTCGGTTTCTCAT+AGG + Chr7:72835664-72835683 None:intergenic 35.0%
!! ATCAGGTTGAAGAAAAACTC+CGG - Chr7:72836895-72836914 MsG0780040080.01.T01:intron 35.0%
!! GAGTTTGGTGAGTTGATAAT+CGG + Chr7:72836385-72836404 None:intergenic 35.0%
!! GTTGATTTGGTGGATTCAAT+GGG + Chr7:72835231-72835250 None:intergenic 35.0%
!! TGTTGATTTGGTGGATTCAA+TGG + Chr7:72835232-72835251 None:intergenic 35.0%
!! TTGATTTGGTGGATTCAATG+GGG + Chr7:72835230-72835249 None:intergenic 35.0%
!!! TCCGATTTTTGAGATTGTCT+CGG - Chr7:72836665-72836684 MsG0780040080.01.T01:intron 35.0%
AGTTGTGCTTCATAGTGTTC+CGG - Chr7:72837106-72837125 MsG0780040080.01.T01:CDS 40.0%
ATCATGAGACGTTTGACAGA+TGG + Chr7:72836420-72836439 None:intergenic 40.0%
ATGAAGCACAACTGTCTCAA+CGG + Chr7:72837099-72837118 None:intergenic 40.0%
CGTCTCATGATGTATCAACA+AGG - Chr7:72836429-72836448 MsG0780040080.01.T01:CDS 40.0%
GAAAGATTACAACCGGTGAA+GGG - Chr7:72837033-72837052 MsG0780040080.01.T01:intron 40.0%
GAGGAAGGAAAGATTACAAC+CGG - Chr7:72837026-72837045 MsG0780040080.01.T01:intron 40.0%
GAGTAGTAGGAGAATTTGGA+AGG + Chr7:72835274-72835293 None:intergenic 40.0%
GCCGAGACAATCTCAAAAAT+CGG + Chr7:72836669-72836688 None:intergenic 40.0%
GTAGTAGGAGAATTTGGAAG+GGG + Chr7:72835272-72835291 None:intergenic 40.0%
GTGGAGAATAACTAGCTAGA+AGG + Chr7:72835355-72835374 None:intergenic 40.0%
TCCAAACATGTGTGCATACA+TGG - Chr7:72836203-72836222 MsG0780040080.01.T01:CDS 40.0%
TGAAGAAAAACTCCGGCTTA+AGG - Chr7:72836902-72836921 MsG0780040080.01.T01:intron 40.0%
TGAGCACATGACTGATCTTA+AGG - Chr7:72835516-72835535 MsG0780040080.01.T01:CDS 40.0%
TTTAGATTCACTCGTTGGAC+AGG - Chr7:72836578-72836597 MsG0780040080.01.T01:intron 40.0%
! ACGTGGGTGATTTTGGATTT+TGG + Chr7:72836324-72836343 None:intergenic 40.0%
! CATCTTCTGAAAGATGTTCC+TGG - Chr7:72836759-72836778 MsG0780040080.01.T01:intron 40.0%
! GACGTTTGACAGATGGTTTT+AGG + Chr7:72836413-72836432 None:intergenic 40.0%
! GCAGCATCTTTACCTAGTTT+TGG + Chr7:72836273-72836292 None:intergenic 40.0%
! GTTGAAGCTTTTGCACCAAT+TGG - Chr7:72836813-72836832 MsG0780040080.01.T01:intron 40.0%
! TATCAACAAGGTTGTTTCGC+AGG - Chr7:72836441-72836460 MsG0780040080.01.T01:intron 40.0%
! TTTTGGATGAAATGAGGAGG+AGG - Chr7:72836997-72837016 MsG0780040080.01.T01:intron 40.0%
!! TTGGAATGGGGTGTTTTGTT+TGG - Chr7:72837056-72837075 MsG0780040080.01.T01:CDS 40.0%
!!! TGGAATGGGGTGTTTTGTTT+GGG - Chr7:72837057-72837076 MsG0780040080.01.T01:CDS 40.0%
!!! TGGTTTTAGGCCTAAGAGTT+TGG + Chr7:72836400-72836419 None:intergenic 40.0%
!!! TGTTTTGTTTGGGTTTGGAC+CGG - Chr7:72837067-72837086 MsG0780040080.01.T01:CDS 40.0%
ACTGTCTCAACGGTTAAACC+CGG + Chr7:72837089-72837108 None:intergenic 45.0%
AGAAAAACTCCGGCTTAAGG+AGG - Chr7:72836905-72836924 MsG0780040080.01.T01:intron 45.0%
AGACGCAAGACAAGACTTAG+TGG - Chr7:72836236-72836255 MsG0780040080.01.T01:CDS 45.0%
AGTGCCAAAAGCCAAGATAG+TGG + Chr7:72835431-72835450 None:intergenic 45.0%
AGTTACACAGTGAGAAGGAG+TGG + Chr7:72835455-72835474 None:intergenic 45.0%
ATCAGTCATGTGCTCACTGT+TGG + Chr7:72835512-72835531 None:intergenic 45.0%
CAGCAAGATCTTTCGCTAAG+CGG + Chr7:72836479-72836498 None:intergenic 45.0%
CGCACCAATAATCATTGCTG+CGG + Chr7:72836622-72836641 None:intergenic 45.0%
CGCAGCAATGATTATTGGTG+CGG - Chr7:72836620-72836639 MsG0780040080.01.T01:intron 45.0%
CTTCATAGTGTTCCGGTTCA+GGG - Chr7:72837113-72837132 MsG0780040080.01.T01:CDS 45.0%
GAAAAGTGAGCCCAACTTCA+CGG + Chr7:72836740-72836759 None:intergenic 45.0%
GAGAATTTGGAAGGGGAATC+AGG + Chr7:72835265-72835284 None:intergenic 45.0%
GCCATGTATGCACACATGTT+TGG + Chr7:72836207-72836226 None:intergenic 45.0%
GCTTGAGTTACACAGTGAGA+AGG + Chr7:72835460-72835479 None:intergenic 45.0%
GGAAAGATTACAACCGGTGA+AGG - Chr7:72837032-72837051 MsG0780040080.01.T01:intron 45.0%
GGACGCTCAACAGTTAAATC+TGG + Chr7:72836648-72836667 None:intergenic 45.0%
TCTTGTCTTGCGTCTAGTGA+TGG + Chr7:72836231-72836250 None:intergenic 45.0%
TGAAATGAGGAGGAGGTCTA+AGG - Chr7:72837004-72837023 MsG0780040080.01.T01:intron 45.0%
! AATGAGTATCTGACGGACCA+CGG + Chr7:72836560-72836579 None:intergenic 45.0%
! CAAAAGCCAAGATAGTGGCA+GGG + Chr7:72835426-72835445 None:intergenic 45.0%
! GAAAACGACGTGGGTGATTT+TGG + Chr7:72836331-72836350 None:intergenic 45.0%
!! TGGACCGGCTATTTTAGATC+AGG - Chr7:72836878-72836897 MsG0780040080.01.T01:intron 45.0%
!!! ATCTTTTGGGTTGCACATCC+AGG - Chr7:72836855-72836874 MsG0780040080.01.T01:intron 45.0%
!!! GTTTTGTTTGGGTTTGGACC+GGG - Chr7:72837068-72837087 MsG0780040080.01.T01:CDS 45.0%
!!! TGGGGTGTTTTGTTTGGGTT+TGG - Chr7:72837062-72837081 MsG0780040080.01.T01:CDS 45.0%
!!! TATAAATATATTTTTGATAT+GGG + Chr7:72835195-72835214 None:intergenic 5.0%
AACCGGTGAAGGGTTGGAAT+GGG - Chr7:72837043-72837062 MsG0780040080.01.T01:CDS 50.0%
AAGTGGTGCAGAAAACGACG+TGG + Chr7:72836341-72836360 None:intergenic 50.0%
AATGAGGAGGAGGTCTAAGG+AGG - Chr7:72837007-72837026 MsG0780040080.01.T01:intron 50.0%
ACGGACATCTCCGTGAAGTT+GGG - Chr7:72836727-72836746 MsG0780040080.01.T01:intron 50.0%
ACTTCTGGTGTAGACATGCC+TGG - Chr7:72836357-72836376 MsG0780040080.01.T01:CDS 50.0%
AGGCATGTCTACACCAGAAG+TGG + Chr7:72836358-72836377 None:intergenic 50.0%
AGTGGTGCAGAAAACGACGT+GGG + Chr7:72836340-72836359 None:intergenic 50.0%
CACAACAATGGTGACTGTGG+AGG - Chr7:72835372-72835391 MsG0780040080.01.T01:three_prime_UTR 50.0%
CGGCACGTGCTTAGTGAATA+TGG - Chr7:72836945-72836964 MsG0780040080.01.T01:intron 50.0%
CGTAAGGCTCAACGTTCCAA+TGG - Chr7:72835400-72835419 MsG0780040080.01.T01:three_prime_UTR 50.0%
CTCCACAACAATGGTGACTG+TGG - Chr7:72835369-72835388 MsG0780040080.01.T01:three_prime_UTR 50.0%
CTCCACAGTCACCATTGTTG+TGG + Chr7:72835374-72835393 None:intergenic 50.0%
GACTGTGGAGGAGATTCGTA+AGG - Chr7:72835384-72835403 MsG0780040080.01.T01:three_prime_UTR 50.0%
GATTACAACCGGTGAAGGGT+TGG - Chr7:72837037-72837056 MsG0780040080.01.T01:intron 50.0%
GCTTCATAGTGTTCCGGTTC+AGG - Chr7:72837112-72837131 MsG0780040080.01.T01:CDS 50.0%
GGAGCCGCAGCAATGATTAT+TGG - Chr7:72836615-72836634 MsG0780040080.01.T01:intron 50.0%
GGAGTTTCTCCTCCTTAAGC+CGG + Chr7:72836917-72836936 None:intergenic 50.0%
GGCTTAAGGAGGAGAAACTC+CGG - Chr7:72836916-72836935 MsG0780040080.01.T01:intron 50.0%
TCAATCGCGCCATCAGAATC+AGG + Chr7:72836708-72836727 None:intergenic 50.0%
TGGTTGACCCCATTCAGCTA+TGG + Chr7:72836304-72836323 None:intergenic 50.0%
! ATCACCGCAGTTACTTTCCG+TGG - Chr7:72836540-72836559 MsG0780040080.01.T01:intron 50.0%
! CAACAAGGTTGTTTCGCAGG+CGG - Chr7:72836444-72836463 MsG0780040080.01.T01:intron 50.0%
! CCAAAAGCCAAGATAGTGGC+AGG + Chr7:72835427-72835446 None:intergenic 50.0%
! GATTCTGATGGCGCGATTGA+CGG - Chr7:72836708-72836727 MsG0780040080.01.T01:intron 50.0%
! TCTAAAATAGCCGGTCCACC+TGG + Chr7:72836876-72836895 None:intergenic 50.0%
!! CCTGCCACTATCTTGGCTTT+TGG - Chr7:72835424-72835443 MsG0780040080.01.T01:three_prime_UTR 50.0%
!! GTCGTTTTCTGCACCACTTC+TGG - Chr7:72836342-72836361 MsG0780040080.01.T01:CDS 50.0%
!! GTGAGTTGATAATCGGCACC+AGG + Chr7:72836378-72836397 None:intergenic 50.0%
!!! TTTTGGGTTGCACATCCAGG+TGG - Chr7:72836858-72836877 MsG0780040080.01.T01:intron 50.0%
ACCCCATTCCAACCCTTCAC+CGG + Chr7:72837048-72837067 None:intergenic 55.0%
ACCGGTGAAGGGTTGGAATG+GGG - Chr7:72837044-72837063 MsG0780040080.01.T01:CDS 55.0%
AGGAGAAACTCCGGTCCACT+CGG - Chr7:72836925-72836944 MsG0780040080.01.T01:intron 55.0%
AGGAGGAGGTCTAAGGAGGA+AGG - Chr7:72837011-72837030 MsG0780040080.01.T01:intron 55.0%
CAACCGGTGAAGGGTTGGAA+TGG - Chr7:72837042-72837061 MsG0780040080.01.T01:CDS 55.0%
CAATGGCCCTGCCACTATCT+TGG - Chr7:72835417-72835436 MsG0780040080.01.T01:three_prime_UTR 55.0%
CGGACCACGGAAAGTAACTG+CGG + Chr7:72836547-72836566 None:intergenic 55.0%
GACGGACATCTCCGTGAAGT+TGG - Chr7:72836726-72836745 MsG0780040080.01.T01:intron 55.0%
TTCACTAAGCACGTGCCGAG+TGG + Chr7:72836943-72836962 None:intergenic 55.0%
! CAAGATAGTGGCAGGGCCAT+TGG + Chr7:72835419-72835438 None:intergenic 55.0%
CTCGTTGGACAGGCGCTCTT+CGG - Chr7:72836588-72836607 MsG0780040080.01.T01:intron 60.0%
GGTTGCACATCCAGGTGGAC+CGG - Chr7:72836863-72836882 MsG0780040080.01.T01:intron 60.0%
TAAGCACGTGCCGAGTGGAC+CGG + Chr7:72836938-72836957 None:intergenic 60.0%
GGACAGGCGCTCTTCGGTGA+TGG - Chr7:72836594-72836613 MsG0780040080.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 72835192 72837403 72835192 ID=MsG0780040080.01;Name=MsG0780040080.01
Chr7 mRNA 72835192 72837403 72835192 ID=MsG0780040080.01.T01;Parent=MsG0780040080.01;Name=MsG0780040080.01.T01;_AED=0.49;_eAED=0.49;_QI=187|1|1|1|1|1|2|264|391
Chr7 exon 72835192 72836453 72835192 ID=MsG0780040080.01.T01:exon:12989;Parent=MsG0780040080.01.T01
Chr7 exon 72837039 72837403 72837039 ID=MsG0780040080.01.T01:exon:12988;Parent=MsG0780040080.01.T01
Chr7 five_prime_UTR 72837217 72837403 72837217 ID=MsG0780040080.01.T01:five_prime_utr;Parent=MsG0780040080.01.T01
Chr7 CDS 72837039 72837216 72837039 ID=MsG0780040080.01.T01:cds;Parent=MsG0780040080.01.T01
Chr7 CDS 72835456 72836453 72835456 ID=MsG0780040080.01.T01:cds;Parent=MsG0780040080.01.T01
Chr7 three_prime_UTR 72835192 72835455 72835192 ID=MsG0780040080.01.T01:three_prime_utr;Parent=MsG0780040080.01.T01
Gene Sequence

>MsG0780040080.01.T01

ATGGTGACTGTGGAGGAGATTCGTAAGGCTCAACGTTCCAATGGCCCTGCCACTATCTTGGCTTTTGGCACTGCCACTCCTTCTCACTGTGTAACTCAAGCTGAATATCCTGATTACTACTTTCGTATCACCAACAGTGAGCACATGACTGATCTTAAGGAAAAATTCAAGCGCATGTGTGAGAAATCGATGATAAAGAAACGTTACATGCACATAACAGAAGAATTTCTGAAAGAGAATCCAAACATGTGTGCATACATGGCACCATCACTAGACGCAAGACAAGACTTAGTGGTAGTTGAAGTACCAAAACTAGGTAAAGATGCTGCAAAAAAAGCCATAGCTGAATGGGGTCAACCAAAATCCAAAATCACCCACGTCGTTTTCTGCACCACTTCTGGTGTAGACATGCCTGGTGCCGATTATCAACTCACCAAACTCTTAGGCCTAAAACCATCTGTCAAACGTCTCATGATGTATCAACAAGGTTGTTTCGCAGGCGGCACAGTTCTCCGCTTAGCGAAAGATCTTGCTGAGAATAACAAAAATGCAAGAGTTCTTGTTGTTTGTTCTGAAATCACCGCAGTTACTTTCCGTGGTCCGTCAGATACTCATTTAGATTCACTCGTTGGACAGGCGCTCTTCGGTGATGGAGCCGCAGCAATGATTATTGGTGCGGATCCAGATTTAACTGTTGAGCGTCCGATTTTTGAGATTGTCTCGGCTGCTCAAACTATTCTTCCTGATTCTGATGGCGCGATTGACGGACATCTCCGTGAAGTTGGGCTCACTTTTCATCTTCTGAAAGATGTTCCTGGGATTATCTCAAAGAATATTGAGAAGAGTTTGGTTGAAGCTTTTGCACCAATTGGAATAAGTGATTGGAATTCGATCTTTTGGGTTGCACATCCAGGTGGACCGGCTATTTTAGATCAGGTTGAAGAAAAACTCCGGCTTAAGGAGGAGAAACTCCGGTCCACTCGGCACGTGCTTAGTGAATATGGAAATATGTCGAGTGCTTGTGTTTTGTTTATTTTGGATGAAATGAGGAGGAGGTCTAAGGAGGAAGGAAAGATTACAACCGGTGAAGGGTTGGAATGGGGTGTTTTGTTTGGGTTTGGACCGGGTTTAACCGTTGAGACAGTTGTGCTTCATAGTGTTCCGGTTCAGGGTTGA

Protein sequence

>MsG0780040080.01.T01

MVTVEEIRKAQRSNGPATILAFGTATPSHCVTQAEYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHITEEFLKENPNMCAYMAPSLDARQDLVVVEVPKLGKDAAKKAIAEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDLTVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFAPIGISDWNSIFWVAHPGGPAILDQVEEKLRLKEEKLRSTRHVLSEYGNMSSACVLFILDEMRRRSKEEGKITTGEGLEWGVLFGFGPGLTVETVVLHSVPVQG*