AlfalfaGEDB | MsG0780040482.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040482.01

KEGG: K09285
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040482.01.T01	PNY14867.1	89.691	97	10	0	8	104	315	411	6.79E-54	186

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040482.01.T01	Q8GWK2	55.294	85	28	3	8	91	336	411	2.49E-19	86.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040482.01.T01	A0A2K3PHV3	89.691	97	10	0	8	104	315	411	3.25e-54	186

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0780040482.01	0.827848	1.247290e-54	1.218605e-51
MsG0080048150.01	MsG0780040482.01	0.807657	4.541516e-50	2.543939e-47
MsG0080049140.01	MsG0780040482.01	0.810564	1.082435e-50	6.546719e-48
MsG0180000353.01	MsG0780040482.01	0.817334	3.479869e-52	2.526985e-49
MsG0180000360.01	MsG0780040482.01	0.853762	1.928325e-61	4.211452e-58
MsG0180000373.01	MsG0780040482.01	0.847779	9.319166e-60	1.674400e-56
MsG0180002421.01	MsG0780040482.01	0.802767	4.799565e-49	2.370937e-46
MsG0180003699.01	MsG0780040482.01	0.806840	6.766602e-50	3.710874e-47
MsG0180004661.01	MsG0780040482.01	0.806447	8.190118e-50	4.446451e-47
MsG0180004754.01	MsG0780040482.01	0.813406	2.600923e-51	1.697090e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040482.01.T01	MTR_7g091390	97.619	84	2	0	8	91	227	310	1.69e-53	172
MsG0780040482.01.T01	MTR_7g091390	97.619	84	2	0	8	91	315	398	6.24e-53	173

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040482.01.T01	AT2G41710	55.294	85	28	3	8	91	331	406	2.39e-20	87.0
MsG0780040482.01.T01	AT2G41710	55.294	85	28	3	8	91	366	441	2.50e-20	87.0
MsG0780040482.01.T01	AT2G41710	55.294	85	28	3	8	91	336	411	2.54e-20	86.7
MsG0780040482.01.T01	AT2G41710	55.294	85	28	3	8	91	331	406	2.96e-20	86.7

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Find 41 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATAGTGTAGGTTGAAT+CGG	0.419840	7:+78233995	None:intergenic
AACATAGTGTAGGTTGAATC+GGG	0.509559	7:+78233996	None:intergenic
AAGCTCAGCTTTCAGGCTCT+TGG	0.370253	7:+78233927	None:intergenic
ACATTGCAATGGGAATGAGT+GGG	0.685010	7:-78235258	MsG0780040482.01.T01:CDS
AGAAAGGCCGGCAGGAAGCA+TGG	0.520929	7:+78235117	None:intergenic
ATAGTCAATGAGTTGGATCG+TGG	0.596990	7:-78235331	MsG0780040482.01.T01:CDS
ATGAGAGATGTCCAGAGAGC+AGG	0.478776	7:+78235142	None:intergenic
CAACCTCAGATGTACGAGAA+AGG	0.556043	7:+78235101	None:intergenic
CAATGAGTTGGATCGTGGGA+AGG	0.597269	7:-78235326	MsG0780040482.01.T01:CDS
CAATGGTAGATCCTGCTCTC+TGG	0.448245	7:-78235153	MsG0780040482.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTTTATCACATCTTTGT+AGG	-	Chr7:78235214-78235233	MsG0780040482.01.T01:CDS	30.0%
CACATTAATCCAAATGTTCT+TGG	+	Chr7:78235249-78235268	None:intergenic	30.0%
GGAGCTTCTCATTTATATTA+TGG	-	Chr7:78234617-78234636	MsG0780040482.01.T01:intron	30.0%
TAATCCAAATGTTCTTGGTA+AGG	+	Chr7:78235244-78235263	None:intergenic	30.0%
TCTATCTGGCAATAATAAGT+TGG	-	Chr7:78235048-78235067	MsG0780040482.01.T01:CDS	30.0%
TTAATTGTTTCGTGTAACAG+TGG	+	Chr7:78235101-78235120	None:intergenic	30.0%
AGATAGAGTTTGACTGCTAT+AGG	+	Chr7:78235035-78235054	None:intergenic	35.0%
CAGACAAGAATGATGTCAAT+GGG	+	Chr7:78234077-78234096	None:intergenic	35.0%
CAGTAGTAACACTATCATGT+TGG	+	Chr7:78234554-78234573	None:intergenic	35.0%
GAACATTTGGATTAATGTGC+AGG	-	Chr7:78235250-78235269	MsG0780040482.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	78233931	78235374	78233931	ID=MsG0780040482.01;Name=MsG0780040482.01
Chr7	mRNA	78233931	78235374	78233931	ID=MsG0780040482.01.T01;Parent=MsG0780040482.01;Name=MsG0780040482.01.T01;_AED=0.49;_eAED=0.72;_QI=0\|0\|0\|1\|0\|0\|2\|0\|164
Chr7	exon	78235019	78235374	78235019	ID=MsG0780040482.01.T01:exon:16119;Parent=MsG0780040482.01.T01
Chr7	exon	78233931	78234069	78233931	ID=MsG0780040482.01.T01:exon:16118;Parent=MsG0780040482.01.T01
Chr7	CDS	78235019	78235374	78235019	ID=MsG0780040482.01.T01:cds;Parent=MsG0780040482.01.T01
Chr7	CDS	78233931	78234069	78233931	ID=MsG0780040482.01.T01:cds;Parent=MsG0780040482.01.T01

Gene Sequence

>MsG0780040482.01.T01

ATGACGAGAATGAAAACAAAAATAGTCAATGAGTTGGATCGTGGGAAGGCAGTAGAGAAACCTTCAAATCATGATGGCAGCAATGATCGACTTGACATTGCAATGGGAATGAGTGGGGCGTTGTCTCTTCAAAGAAATGTTTACCCATTGACATCATTCTTGTCTGCACCACTTTTGACAGCCTACAACACTGTTGATCCAATGGTAGATCCTGCTCTCTGGACATCTCTCATTCCCATGCTTCCTGCCGGCCTTTCTCGTACATCTGAGGTTGGTATAATGACTAAAGTATTTTACTTTATTCACAAGGAAGAAAGATCACATGAAATCTCATTTAACAATGCTAAAAAGGCTCAGTTCACCTTACCAAGAACATTTGGATTAATGTGCAGGTTACAAAGACAGAGCCCGATTCAACCTACACTATGTTTCAGCCACGGGAGTGATTGGACATCCGAATTTCTAATTGAAGAAAGCCAAGAGCCTGAAAGCTGA

Protein sequence

>MsG0780040482.01.T01

MTRMKTKIVNELDRGKAVEKPSNHDGSNDRLDIAMGMSGALSLQRNVYPLTSFLSAPLLTAYNTVDPMVDPALWTSLIPMLPAGLSRTSEVGIMTKVFYFIHKEERSHEISFNNAKKAQFTLPRTFGLMCRLQRQSPIQPTLCFSHGSDWTSEFLIEESQEPES*