Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040482.01.T01 | PNY14867.1 | 89.691 | 97 | 10 | 0 | 8 | 104 | 315 | 411 | 6.79E-54 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040482.01.T01 | Q8GWK2 | 55.294 | 85 | 28 | 3 | 8 | 91 | 336 | 411 | 2.49E-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040482.01.T01 | A0A2K3PHV3 | 89.691 | 97 | 10 | 0 | 8 | 104 | 315 | 411 | 3.25e-54 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0780040482.01 | 0.827848 | 1.247290e-54 | 1.218605e-51 |
| MsG0080048150.01 | MsG0780040482.01 | 0.807657 | 4.541516e-50 | 2.543939e-47 |
| MsG0080049140.01 | MsG0780040482.01 | 0.810564 | 1.082435e-50 | 6.546719e-48 |
| MsG0180000353.01 | MsG0780040482.01 | 0.817334 | 3.479869e-52 | 2.526985e-49 |
| MsG0180000360.01 | MsG0780040482.01 | 0.853762 | 1.928325e-61 | 4.211452e-58 |
| MsG0180000373.01 | MsG0780040482.01 | 0.847779 | 9.319166e-60 | 1.674400e-56 |
| MsG0180002421.01 | MsG0780040482.01 | 0.802767 | 4.799565e-49 | 2.370937e-46 |
| MsG0180003699.01 | MsG0780040482.01 | 0.806840 | 6.766602e-50 | 3.710874e-47 |
| MsG0180004661.01 | MsG0780040482.01 | 0.806447 | 8.190118e-50 | 4.446451e-47 |
| MsG0180004754.01 | MsG0780040482.01 | 0.813406 | 2.600923e-51 | 1.697090e-48 |
| MsG0180004806.01 | MsG0780040482.01 | 0.813944 | 1.980811e-51 | 1.311347e-48 |
| MsG0180004989.01 | MsG0780040482.01 | 0.813937 | 1.987227e-51 | 1.315373e-48 |
| MsG0180005002.01 | MsG0780040482.01 | 0.814634 | 1.394436e-51 | 9.406293e-49 |
| MsG0180005388.01 | MsG0780040482.01 | -0.813943 | 1.981475e-51 | 1.311768e-48 |
| MsG0180006235.01 | MsG0780040482.01 | 0.807050 | 6.107921e-50 | 3.367847e-47 |
| MsG0280006420.01 | MsG0780040482.01 | 0.816345 | 5.801542e-52 | 4.100694e-49 |
| MsG0780040472.01 | MsG0780040482.01 | 0.808514 | 2.984101e-50 | 1.709630e-47 |
| MsG0780040482.01 | MsG0780040483.01 | 0.829271 | 5.649847e-55 | 5.755121e-52 |
| MsG0780040482.01 | MsG0780040509.01 | 0.824792 | 6.662660e-54 | 5.962592e-51 |
| MsG0780040482.01 | MsG0780040543.01 | 0.810183 | 1.308586e-50 | 7.834879e-48 |
| MsG0780040482.01 | MsG0780040896.01 | 0.819934 | 8.947972e-53 | 6.981947e-50 |
| MsG0780040482.01 | MsG0780040926.01 | 0.827927 | 1.193902e-54 | 1.169096e-51 |
| MsG0780040482.01 | MsG0780041063.01 | 0.827927 | 1.193555e-54 | 1.168776e-51 |
| MsG0780040482.01 | MsG0780041363.01 | 0.807039 | 6.140624e-50 | 3.384943e-47 |
| MsG0780040482.01 | MsG0880041860.01 | 0.805658 | 1.200558e-49 | 6.387602e-47 |
| MsG0780040482.01 | MsG0880041883.01 | 0.824256 | 8.909243e-54 | 7.849962e-51 |
| MsG0780040482.01 | MsG0880042046.01 | 0.801387 | 9.222660e-49 | 4.398736e-46 |
| MsG0780040482.01 | MsG0880042349.01 | 0.831525 | 1.588808e-55 | 1.728675e-52 |
| MsG0780040482.01 | MsG0880042552.01 | 0.825707 | 4.048572e-54 | 3.718668e-51 |
| MsG0780040482.01 | MsG0880042779.01 | 0.828897 | 6.962882e-55 | 7.013396e-52 |
| MsG0780040482.01 | MsG0880042961.01 | 0.800223 | 1.594089e-48 | 7.382090e-46 |
| MsG0780040482.01 | MsG0880043297.01 | 0.826004 | 3.441271e-54 | 3.187737e-51 |
| MsG0780040482.01 | MsG0880043516.01 | 0.817976 | 2.493007e-52 | 1.842467e-49 |
| MsG0780040482.01 | MsG0880043983.01 | 0.804616 | 1.982808e-49 | 1.027031e-46 |
| MsG0780040482.01 | MsG0880044510.01 | 0.809733 | 1.635448e-50 | 9.678139e-48 |
| MsG0780040482.01 | MsG0880044782.01 | 0.819165 | 1.340329e-52 | 1.023586e-49 |
| MsG0780040482.01 | MsG0880046165.01 | 0.805248 | 1.463062e-49 | 7.702438e-47 |
| MsG0780040482.01 | MsG0880046762.01 | 0.817543 | 3.123164e-52 | 2.281053e-49 |
| MsG0780040482.01 | MsG0880046922.01 | 0.832366 | 9.848575e-56 | 1.098418e-52 |
| MsG0780040482.01 | MsG0880047226.01 | 0.818898 | 1.541085e-52 | 1.168393e-49 |
| MsG0780040482.01 | MsG0880047466.01 | 0.821326 | 4.285508e-53 | 3.475644e-50 |
| MsG0280010633.01 | MsG0780040482.01 | 0.806466 | 8.115954e-50 | 4.408334e-47 |
| MsG0280010779.01 | MsG0780040482.01 | 0.801562 | 8.494045e-49 | 4.069055e-46 |
| MsG0280011014.01 | MsG0780040482.01 | 0.804330 | 2.275505e-49 | 1.169983e-46 |
| MsG0280011282.01 | MsG0780040482.01 | 0.839195 | 1.832323e-57 | 2.511539e-54 |
| MsG0280011399.01 | MsG0780040482.01 | 0.809231 | 2.096343e-50 | 1.224083e-47 |
| MsG0380012471.01 | MsG0780040482.01 | 0.830560 | 2.741889e-55 | 2.898997e-52 |
| MsG0380014754.01 | MsG0780040482.01 | 0.845253 | 4.556868e-59 | 7.549351e-56 |
| MsG0680031549.01 | MsG0780040482.01 | 0.832291 | 1.027801e-55 | 1.143656e-52 |
| MsG0680031616.01 | MsG0780040482.01 | 0.809976 | 1.449916e-50 | 8.634886e-48 |
| MsG0680034598.01 | MsG0780040482.01 | 0.833228 | 6.014454e-56 | 6.883151e-53 |
| MsG0480018641.01 | MsG0780040482.01 | 0.817872 | 2.632182e-52 | 1.939839e-49 |
| MsG0480018918.01 | MsG0780040482.01 | 0.827431 | 1.570645e-54 | 1.516044e-51 |
| MsG0480018919.01 | MsG0780040482.01 | 0.821539 | 3.826087e-53 | 3.121543e-50 |
| MsG0480019635.01 | MsG0780040482.01 | 0.864030 | 1.630280e-64 | 5.045567e-61 |
| MsG0480019922.01 | MsG0780040482.01 | 0.809509 | 1.827333e-50 | 1.074888e-47 |
| MsG0480020263.01 | MsG0780040482.01 | 0.835820 | 1.343003e-56 | 1.661170e-53 |
| MsG0480021156.01 | MsG0780040482.01 | 0.830883 | 2.284402e-55 | 2.438571e-52 |
| MsG0480021225.01 | MsG0780040482.01 | 0.822950 | 1.800886e-53 | 1.529398e-50 |
| MsG0480021812.01 | MsG0780040482.01 | 0.807334 | 5.317324e-50 | 2.953729e-47 |
| MsG0480022167.01 | MsG0780040482.01 | 0.885005 | 1.180048e-71 | 7.964151e-68 |
| MsG0480022325.01 | MsG0780040482.01 | 0.863818 | 1.897634e-64 | 5.829691e-61 |
| MsG0480022620.01 | MsG0780040482.01 | 0.848563 | 5.660446e-60 | 1.042994e-56 |
| MsG0480023013.01 | MsG0780040482.01 | 0.808747 | 2.660335e-50 | 1.533402e-47 |
| MsG0480023105.01 | MsG0780040482.01 | 0.822908 | 1.841089e-53 | 1.561758e-50 |
| MsG0480023262.01 | MsG0780040482.01 | 0.811599 | 6.458575e-51 | 4.014751e-48 |
| MsG0480023324.01 | MsG0780040482.01 | 0.824747 | 6.827589e-54 | 6.102320e-51 |
| MsG0480023541.01 | MsG0780040482.01 | 0.831663 | 1.469652e-55 | 1.605550e-52 |
| MsG0480023620.01 | MsG0780040482.01 | 0.810349 | 1.204775e-50 | 7.245115e-48 |
| MsG0480023762.01 | MsG0780040482.01 | 0.802287 | 6.025625e-49 | 2.940457e-46 |
| MsG0480023874.01 | MsG0780040482.01 | 0.803203 | 3.898473e-49 | 1.947276e-46 |
| MsG0580024035.01 | MsG0780040482.01 | 0.827281 | 1.705878e-54 | 1.639440e-51 |
| MsG0580024109.01 | MsG0780040482.01 | 0.808537 | 2.950419e-50 | 1.691336e-47 |
| MsG0580024129.01 | MsG0780040482.01 | 0.818062 | 2.384028e-52 | 1.766101e-49 |
| MsG0580024388.01 | MsG0780040482.01 | 0.805560 | 1.258669e-49 | 6.679679e-47 |
| MsG0580024478.01 | MsG0780040482.01 | 0.836333 | 9.953940e-57 | 1.250598e-53 |
| MsG0580024489.01 | MsG0780040482.01 | 0.839606 | 1.433070e-57 | 1.989208e-54 |
| MsG0580024758.01 | MsG0780040482.01 | 0.809936 | 1.478645e-50 | 8.796822e-48 |
| MsG0580025352.01 | MsG0780040482.01 | 0.827558 | 1.464261e-54 | 1.418460e-51 |
| MsG0580025385.01 | MsG0780040482.01 | 0.831000 | 2.139026e-55 | 2.291289e-52 |
| MsG0580025740.01 | MsG0780040482.01 | 0.815749 | 7.881855e-52 | 5.481016e-49 |
| MsG0580025766.01 | MsG0780040482.01 | 0.828051 | 1.114188e-54 | 1.095087e-51 |
| MsG0580026059.01 | MsG0780040482.01 | 0.810987 | 8.768455e-51 | 5.364316e-48 |
| MsG0380015350.01 | MsG0780040482.01 | 0.814950 | 1.186437e-51 | 8.071333e-49 |
| MsG0380015548.01 | MsG0780040482.01 | 0.834035 | 3.783198e-56 | 4.435556e-53 |
| MsG0380015793.01 | MsG0780040482.01 | -0.819693 | 1.015855e-52 | 7.872943e-50 |
| MsG0380015831.01 | MsG0780040482.01 | 0.803452 | 3.462484e-49 | 1.740614e-46 |
| MsG0380016703.01 | MsG0780040482.01 | 0.824376 | 8.346481e-54 | 7.379639e-51 |
| MsG0380016765.01 | MsG0780040482.01 | 0.802765 | 4.804307e-49 | 2.373150e-46 |
| MsG0380016994.01 | MsG0780040482.01 | 0.830670 | 2.576947e-55 | 2.733672e-52 |
| MsG0380017159.01 | MsG0780040482.01 | 0.828196 | 1.028306e-54 | 1.014945e-51 |
| MsG0380017239.01 | MsG0780040482.01 | 0.829144 | 6.066336e-55 | 6.155252e-52 |
| MsG0380017240.01 | MsG0780040482.01 | 0.841343 | 5.034644e-58 | 7.375293e-55 |
| MsG0380017998.01 | MsG0780040482.01 | 0.810553 | 1.088422e-50 | 6.580930e-48 |
| MsG0380018007.01 | MsG0780040482.01 | 0.804765 | 1.846309e-49 | 9.600581e-47 |
| MsG0480018230.01 | MsG0780040482.01 | 0.822899 | 1.850706e-53 | 1.569466e-50 |
| MsG0480018397.01 | MsG0780040482.01 | 0.809638 | 1.714016e-50 | 1.011782e-47 |
| MsG0580026145.01 | MsG0780040482.01 | 0.827518 | 1.496744e-54 | 1.448263e-51 |
| MsG0580026593.01 | MsG0780040482.01 | 0.825254 | 5.180751e-54 | 4.697670e-51 |
| MsG0580027413.01 | MsG0780040482.01 | 0.809182 | 2.146650e-50 | 1.251828e-47 |
| MsG0580027431.01 | MsG0780040482.01 | 0.800838 | 1.194405e-48 | 5.618283e-46 |
| MsG0580028060.01 | MsG0780040482.01 | 0.853981 | 1.667828e-61 | 3.669501e-58 |
| MsG0580028330.01 | MsG0780040482.01 | 0.837997 | 3.734533e-57 | 4.935610e-54 |
| MsG0580029729.01 | MsG0780040482.01 | 0.801375 | 9.275373e-49 | 4.422572e-46 |
| MsG0280006477.01 | MsG0780040482.01 | 0.803527 | 3.340989e-49 | 1.682853e-46 |
| MsG0280007196.01 | MsG0780040482.01 | 0.822156 | 2.753682e-53 | 2.286316e-50 |
| MsG0280007545.01 | MsG0780040482.01 | 0.812294 | 4.557539e-51 | 2.886654e-48 |
| MsG0280007609.01 | MsG0780040482.01 | 0.826725 | 2.316641e-54 | 2.190398e-51 |
| MsG0280007790.01 | MsG0780040482.01 | 0.819917 | 9.026244e-53 | 7.039758e-50 |
| MsG0280007983.01 | MsG0780040482.01 | 0.824636 | 7.249039e-54 | 6.458545e-51 |
| MsG0280008280.01 | MsG0780040482.01 | 0.840556 | 8.100027e-58 | 1.158019e-54 |
| MsG0280008679.01 | MsG0780040482.01 | 0.801723 | 7.869626e-49 | 3.785287e-46 |
| MsG0280009241.01 | MsG0780040482.01 | 0.827252 | 1.733171e-54 | 1.664273e-51 |
| MsG0280009255.01 | MsG0780040482.01 | 0.810344 | 1.207817e-50 | 7.262342e-48 |
| MsG0280009514.01 | MsG0780040482.01 | 0.837362 | 5.435471e-57 | 7.043622e-54 |
| MsG0280009794.01 | MsG0780040482.01 | 0.807737 | 4.367209e-50 | 2.451533e-47 |
| MsG0280010002.01 | MsG0780040482.01 | 0.838483 | 2.800498e-57 | 3.756043e-54 |
| MsG0280010301.01 | MsG0780040482.01 | 0.802983 | 4.330019e-49 | 2.150606e-46 |
| MsG0780036752.01 | MsG0780040482.01 | 0.814871 | 1.235286e-51 | 8.385702e-49 |
| MsG0780036815.01 | MsG0780040482.01 | 0.808691 | 2.734532e-50 | 1.573853e-47 |
| MsG0780036823.01 | MsG0780040482.01 | 0.802296 | 6.001210e-49 | 2.929207e-46 |
| MsG0780038837.01 | MsG0780040482.01 | 0.822654 | 2.109668e-53 | 1.776803e-50 |
| MsG0780039137.01 | MsG0780040482.01 | 0.838367 | 2.999996e-57 | 4.009381e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040482.01.T01 | MTR_7g091390 | 97.619 | 84 | 2 | 0 | 8 | 91 | 227 | 310 | 1.69e-53 | 172 |
| MsG0780040482.01.T01 | MTR_7g091390 | 97.619 | 84 | 2 | 0 | 8 | 91 | 315 | 398 | 6.24e-53 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040482.01.T01 | AT2G41710 | 55.294 | 85 | 28 | 3 | 8 | 91 | 331 | 406 | 2.39e-20 | 87.0 |
| MsG0780040482.01.T01 | AT2G41710 | 55.294 | 85 | 28 | 3 | 8 | 91 | 366 | 441 | 2.50e-20 | 87.0 |
| MsG0780040482.01.T01 | AT2G41710 | 55.294 | 85 | 28 | 3 | 8 | 91 | 336 | 411 | 2.54e-20 | 86.7 |
| MsG0780040482.01.T01 | AT2G41710 | 55.294 | 85 | 28 | 3 | 8 | 91 | 331 | 406 | 2.96e-20 | 86.7 |
Find 41 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTACAAGCTCAGCTTTC+AGG | 0.147623 | 7:+78233920 | None:intergenic |
| CTCATTTAACAATGCTAAAA+AGG | 0.206842 | 7:-78235023 | MsG0780040482.01.T01:CDS |
| CACATTAATCCAAATGTTCT+TGG | 0.247919 | 7:+78234037 | None:intergenic |
| GCTTTCTTCAATTAGAAATT+CGG | 0.325409 | 7:+78233949 | None:intergenic |
| TTCACCTTACCAAGAACATT+TGG | 0.367815 | 7:-78234046 | MsG0780040482.01.T01:CDS |
| AAGCTCAGCTTTCAGGCTCT+TGG | 0.370253 | 7:+78233927 | None:intergenic |
| GTTTCAGCCACGGGAGTGAT+TGG | 0.381045 | 7:-78233976 | MsG0780040482.01.T01:CDS |
| CATTGGATCAACAGTGTTGT+AGG | 0.410420 | 7:+78235171 | None:intergenic |
| GAACATTTGGATTAATGTGC+AGG | 0.411774 | 7:-78234033 | MsG0780040482.01.T01:CDS |
| AAACATAGTGTAGGTTGAAT+CGG | 0.419840 | 7:+78233995 | None:intergenic |
| CAATGGTAGATCCTGCTCTC+TGG | 0.448245 | 7:-78235153 | MsG0780040482.01.T01:CDS |
| TTGCTGCCATCATGATTTGA+AGG | 0.466238 | 7:+78235292 | None:intergenic |
| TAATCCAAATGTTCTTGGTA+AGG | 0.474955 | 7:+78234042 | None:intergenic |
| ATGAGAGATGTCCAGAGAGC+AGG | 0.478776 | 7:+78235142 | None:intergenic |
| AACATAGTGTAGGTTGAATC+GGG | 0.509559 | 7:+78233996 | None:intergenic |
| CTCAGATGTACGAGAAAGGC+CGG | 0.518845 | 7:+78235105 | None:intergenic |
| AGAAAGGCCGGCAGGAAGCA+TGG | 0.520929 | 7:+78235117 | None:intergenic |
| CTCATTCCCATGCTTCCTGC+CGG | 0.523635 | 7:-78235124 | MsG0780040482.01.T01:CDS |
| GATCGACTTGACATTGCAAT+GGG | 0.526683 | 7:-78235268 | MsG0780040482.01.T01:CDS |
| CAGACAAGAATGATGTCAAT+GGG | 0.541457 | 7:+78235209 | None:intergenic |
| CTTTCTCGTACATCTGAGGT+TGG | 0.548824 | 7:-78235100 | MsG0780040482.01.T01:CDS |
| CGGCCTTTCTCGTACATCTG+AGG | 0.553206 | 7:-78235104 | MsG0780040482.01.T01:CDS |
| CAACCTCAGATGTACGAGAA+AGG | 0.556043 | 7:+78235101 | None:intergenic |
| GATGTACGAGAAAGGCCGGC+AGG | 0.557024 | 7:+78235109 | None:intergenic |
| CAGAGAGCAGGATCTACCAT+TGG | 0.557981 | 7:+78235154 | None:intergenic |
| CTACACTATGTTTCAGCCAC+GGG | 0.558537 | 7:-78233985 | MsG0780040482.01.T01:CDS |
| GAAAGGCCGGCAGGAAGCAT+GGG | 0.562709 | 7:+78235118 | None:intergenic |
| TGATCGACTTGACATTGCAA+TGG | 0.573444 | 7:-78235269 | MsG0780040482.01.T01:CDS |
| GCAGACAAGAATGATGTCAA+TGG | 0.579355 | 7:+78235208 | None:intergenic |
| CTACAACACTGTTGATCCAA+TGG | 0.582269 | 7:-78235170 | MsG0780040482.01.T01:CDS |
| GAGAAACCTTCAAATCATGA+TGG | 0.583795 | 7:-78235298 | MsG0780040482.01.T01:CDS |
| TAGTCAATGAGTTGGATCGT+GGG | 0.590774 | 7:-78235330 | MsG0780040482.01.T01:CDS |
| ATAGTCAATGAGTTGGATCG+TGG | 0.596990 | 7:-78235331 | MsG0780040482.01.T01:CDS |
| CAATGAGTTGGATCGTGGGA+AGG | 0.597269 | 7:-78235326 | MsG0780040482.01.T01:CDS |
| GACATTGCAATGGGAATGAG+TGG | 0.603558 | 7:-78235259 | MsG0780040482.01.T01:CDS |
| CCTACACTATGTTTCAGCCA+CGG | 0.629098 | 7:-78233986 | MsG0780040482.01.T01:CDS |
| CGGATGTCCAATCACTCCCG+TGG | 0.636413 | 7:+78233969 | None:intergenic |
| GTGTTGTAGGCTGTCAAAAG+TGG | 0.663016 | 7:+78235184 | None:intergenic |
| CCGTGGCTGAAACATAGTGT+AGG | 0.666827 | 7:+78233986 | None:intergenic |
| ACATTGCAATGGGAATGAGT+GGG | 0.685010 | 7:-78235258 | MsG0780040482.01.T01:CDS |
| CATTGCAATGGGAATGAGTG+GGG | 0.722588 | 7:-78235257 | MsG0780040482.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATTGGTTTATTAT+GGG | - | Chr7:78234596-78234615 | MsG0780040482.01.T01:intron | 10.0% |
| !! | ACTGTAATTTGAAAAATTAT+TGG | + | Chr7:78234986-78235005 | None:intergenic | 15.0% |
| !!! | AATAAACCAATTTAAAATGT+TGG | + | Chr7:78234594-78234613 | None:intergenic | 15.0% |
| !!! | AATATAATTAATGCAGTTTT+AGG | - | Chr7:78234847-78234866 | MsG0780040482.01.T01:intron | 15.0% |
| !!! | CATTTTAAATTGGTTTATTA+TGG | - | Chr7:78234595-78234614 | MsG0780040482.01.T01:intron | 15.0% |
| !!! | TTTTTCAAATTACAGTTTTA+AGG | - | Chr7:78234990-78235009 | MsG0780040482.01.T01:intron | 15.0% |
| !! | AAATATGTGAGATATGATTA+TGG | + | Chr7:78234896-78234915 | None:intergenic | 20.0% |
| !! | ACTAGCATCTATAAAATTAA+AGG | + | Chr7:78234664-78234683 | None:intergenic | 20.0% |
| !!! | AAAAAGCATTAAATGAAAGT+AGG | + | Chr7:78234342-78234361 | None:intergenic | 20.0% |
| !!! | AGTATTTTACTTTATTCACA+AGG | - | Chr7:78234218-78234237 | MsG0780040482.01.T01:intron | 20.0% |
| !!! | TATTTGATAACATTCACATT+AGG | + | Chr7:78234924-78234943 | None:intergenic | 20.0% |
| !!! | TATTTTTACTTTTATGAGTC+TGG | - | Chr7:78234473-78234492 | MsG0780040482.01.T01:intron | 20.0% |
| !!! | TATTTTTTCTTAAGTACTTC+TGG | - | Chr7:78234795-78234814 | MsG0780040482.01.T01:intron | 20.0% |
| !!! | TTTAATTTTATAGATGCTAG+TGG | - | Chr7:78234663-78234682 | MsG0780040482.01.T01:intron | 20.0% |
| ! | AACAAAAATAGTCAATGAGT+TGG | - | Chr7:78233945-78233964 | MsG0780040482.01.T01:CDS | 25.0% |
| ! | CTCATTTAACAATGCTAAAA+AGG | - | Chr7:78234260-78234279 | MsG0780040482.01.T01:intron | 25.0% |
| ! | GCTTTCTTCAATTAGAAATT+CGG | + | Chr7:78235337-78235356 | None:intergenic | 25.0% |
| !! | ATTCAGCCAACATTTTAAAT+TGG | - | Chr7:78234585-78234604 | MsG0780040482.01.T01:intron | 25.0% |
| !!! | ACAGTTTTAAGGATTTATTC+AGG | - | Chr7:78235001-78235020 | MsG0780040482.01.T01:intron | 25.0% |
| ACTGTTTATCACATCTTTGT+AGG | - | Chr7:78235214-78235233 | MsG0780040482.01.T01:CDS | 30.0% | |
| CACATTAATCCAAATGTTCT+TGG | + | Chr7:78235249-78235268 | None:intergenic | 30.0% | |
| GGAGCTTCTCATTTATATTA+TGG | - | Chr7:78234617-78234636 | MsG0780040482.01.T01:intron | 30.0% | |
| TAATCCAAATGTTCTTGGTA+AGG | + | Chr7:78235244-78235263 | None:intergenic | 30.0% | |
| TCTATCTGGCAATAATAAGT+TGG | - | Chr7:78235048-78235067 | MsG0780040482.01.T01:CDS | 30.0% | |
| TTAATTGTTTCGTGTAACAG+TGG | + | Chr7:78235101-78235120 | None:intergenic | 30.0% | |
| ! | AAACATAGTGTAGGTTGAAT+CGG | + | Chr7:78235291-78235310 | None:intergenic | 30.0% |
| AGATAGAGTTTGACTGCTAT+AGG | + | Chr7:78235035-78235054 | None:intergenic | 35.0% | |
| CAGACAAGAATGATGTCAAT+GGG | + | Chr7:78234077-78234096 | None:intergenic | 35.0% | |
| CAGTAGTAACACTATCATGT+TGG | + | Chr7:78234554-78234573 | None:intergenic | 35.0% | |
| GAACATTTGGATTAATGTGC+AGG | - | Chr7:78235250-78235269 | MsG0780040482.01.T01:CDS | 35.0% | |
| GAGAAACCTTCAAATCATGA+TGG | - | Chr7:78233985-78234004 | MsG0780040482.01.T01:CDS | 35.0% | |
| GATAGAGTTTGACTGCTATA+GGG | + | Chr7:78235034-78235053 | None:intergenic | 35.0% | |
| TATAGCAGTCAAACTCTATC+TGG | - | Chr7:78235034-78235053 | MsG0780040482.01.T01:CDS | 35.0% | |
| TATTGATCCCATAACCAGTT+TGG | + | Chr7:78234831-78234850 | None:intergenic | 35.0% | |
| TTCACCTTACCAAGAACATT+TGG | - | Chr7:78235237-78235256 | MsG0780040482.01.T01:CDS | 35.0% | |
| TTGTAAGGTTGAGTTAGTGT+AGG | - | Chr7:78235154-78235173 | MsG0780040482.01.T01:CDS | 35.0% | |
| ! | AACATAGTGTAGGTTGAATC+GGG | + | Chr7:78235290-78235309 | None:intergenic | 35.0% |
| ! | ACACTATCATGTTGGTCTAA+TGG | + | Chr7:78234546-78234565 | None:intergenic | 35.0% |
| ! | ACCTTACAAACCAGGTTTTA+TGG | + | Chr7:78235143-78235162 | None:intergenic | 35.0% |
| ! | GTGAAAGTATGAATGAAGCT+AGG | - | Chr7:78234950-78234969 | MsG0780040482.01.T01:intron | 35.0% |
| !! | CCTTACAAACCAGGTTTTAT+GGG | + | Chr7:78235142-78235161 | None:intergenic | 35.0% |
| !! | CTTACAAACCAGGTTTTATG+GGG | + | Chr7:78235141-78235160 | None:intergenic | 35.0% |
| AAGTCCATCCAAACTGGTTA+TGG | - | Chr7:78234820-78234839 | MsG0780040482.01.T01:intron | 40.0% | |
| ACATTGCAATGGGAATGAGT+GGG | - | Chr7:78234025-78234044 | MsG0780040482.01.T01:CDS | 40.0% | |
| AGTCCATCCAAACTGGTTAT+GGG | - | Chr7:78234821-78234840 | MsG0780040482.01.T01:intron | 40.0% | |
| CATTGGATCAACAGTGTTGT+AGG | + | Chr7:78234115-78234134 | None:intergenic | 40.0% | |
| CTAACTCAACCTTACAAACC+AGG | + | Chr7:78235151-78235170 | None:intergenic | 40.0% | |
| CTACAACACTGTTGATCCAA+TGG | - | Chr7:78234113-78234132 | MsG0780040482.01.T01:intron | 40.0% | |
| GCAGACAAGAATGATGTCAA+TGG | + | Chr7:78234078-78234097 | None:intergenic | 40.0% | |
| TTGCTGCCATCATGATTTGA+AGG | + | Chr7:78233994-78234013 | None:intergenic | 40.0% | |
| ! | ATAGTCAATGAGTTGGATCG+TGG | - | Chr7:78233952-78233971 | MsG0780040482.01.T01:CDS | 40.0% |
| ! | CCCATAAAACCTGGTTTGTA+AGG | - | Chr7:78235139-78235158 | MsG0780040482.01.T01:CDS | 40.0% |
| ! | CTGGCAATAATAAGTTGGCA+GGG | - | Chr7:78235053-78235072 | MsG0780040482.01.T01:CDS | 40.0% |
| ! | TAGTCAATGAGTTGGATCGT+GGG | - | Chr7:78233953-78233972 | MsG0780040482.01.T01:CDS | 40.0% |
| ! | TCTGGCAATAATAAGTTGGC+AGG | - | Chr7:78235052-78235071 | MsG0780040482.01.T01:CDS | 40.0% |
| !! | GATCGACTTGACATTGCAAT+GGG | - | Chr7:78234015-78234034 | MsG0780040482.01.T01:CDS | 40.0% |
| !! | TGATCGACTTGACATTGCAA+TGG | - | Chr7:78234014-78234033 | MsG0780040482.01.T01:CDS | 40.0% |
| ACTCATCAGCAAATGTCGTG+TGG | + | Chr7:78234873-78234892 | None:intergenic | 45.0% | |
| CAACCTCAGATGTACGAGAA+AGG | + | Chr7:78234185-78234204 | None:intergenic | 45.0% | |
| CATTGCAATGGGAATGAGTG+GGG | - | Chr7:78234026-78234045 | MsG0780040482.01.T01:CDS | 45.0% | |
| CCTACACTATGTTTCAGCCA+CGG | - | Chr7:78235297-78235316 | MsG0780040482.01.T01:CDS | 45.0% | |
| CTACACTATGTTTCAGCCAC+GGG | - | Chr7:78235298-78235317 | MsG0780040482.01.T01:CDS | 45.0% | |
| GACATTGCAATGGGAATGAG+TGG | - | Chr7:78234024-78234043 | MsG0780040482.01.T01:CDS | 45.0% | |
| GATCCCATAACCAGTTTGGA+TGG | + | Chr7:78234827-78234846 | None:intergenic | 45.0% | |
| GTGTTGTAGGCTGTCAAAAG+TGG | + | Chr7:78234102-78234121 | None:intergenic | 45.0% | |
| TCAGTCGACAGGACTGTATA+TGG | - | Chr7:78235181-78235200 | MsG0780040482.01.T01:CDS | 45.0% | |
| ! | CTTTCTCGTACATCTGAGGT+TGG | - | Chr7:78234183-78234202 | MsG0780040482.01.T01:intron | 45.0% |
| ATGAGAGATGTCCAGAGAGC+AGG | + | Chr7:78234144-78234163 | None:intergenic | 50.0% | |
| CAATGGTAGATCCTGCTCTC+TGG | - | Chr7:78234130-78234149 | MsG0780040482.01.T01:intron | 50.0% | |
| CAGAGAGCAGGATCTACCAT+TGG | + | Chr7:78234132-78234151 | None:intergenic | 50.0% | |
| CCGTGGCTGAAACATAGTGT+AGG | + | Chr7:78235300-78235319 | None:intergenic | 50.0% | |
| CTCAGATGTACGAGAAAGGC+CGG | + | Chr7:78234181-78234200 | None:intergenic | 50.0% | |
| CTGGAGAAGTCCATCCAAAC+TGG | - | Chr7:78234814-78234833 | MsG0780040482.01.T01:intron | 50.0% | |
| GTGTAGGAGAATCAGTCGAC+AGG | - | Chr7:78235170-78235189 | MsG0780040482.01.T01:CDS | 50.0% | |
| TCGTACAGCCCCATAAAACC+TGG | - | Chr7:78235130-78235149 | MsG0780040482.01.T01:CDS | 50.0% | |
| ! | CAATGAGTTGGATCGTGGGA+AGG | - | Chr7:78233957-78233976 | MsG0780040482.01.T01:CDS | 50.0% |
| CGGCCTTTCTCGTACATCTG+AGG | - | Chr7:78234179-78234198 | MsG0780040482.01.T01:intron | 55.0% | |
| CTCATTCCCATGCTTCCTGC+CGG | - | Chr7:78234159-78234178 | MsG0780040482.01.T01:intron | 55.0% | |
| GTTTCAGCCACGGGAGTGAT+TGG | - | Chr7:78235307-78235326 | MsG0780040482.01.T01:CDS | 55.0% | |
| AGAAAGGCCGGCAGGAAGCA+TGG | + | Chr7:78234169-78234188 | None:intergenic | 60.0% | |
| CGGATGTCCAATCACTCCCG+TGG | + | Chr7:78235317-78235336 | None:intergenic | 60.0% | |
| GATGTACGAGAAAGGCCGGC+AGG | + | Chr7:78234177-78234196 | None:intergenic | 60.0% | |
| ! | GAAAGGCCGGCAGGAAGCAT+GGG | + | Chr7:78234168-78234187 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 78233931 | 78235374 | 78233931 | ID=MsG0780040482.01;Name=MsG0780040482.01 |
| Chr7 | mRNA | 78233931 | 78235374 | 78233931 | ID=MsG0780040482.01.T01;Parent=MsG0780040482.01;Name=MsG0780040482.01.T01;_AED=0.49;_eAED=0.72;_QI=0|0|0|1|0|0|2|0|164 |
| Chr7 | exon | 78235019 | 78235374 | 78235019 | ID=MsG0780040482.01.T01:exon:16119;Parent=MsG0780040482.01.T01 |
| Chr7 | exon | 78233931 | 78234069 | 78233931 | ID=MsG0780040482.01.T01:exon:16118;Parent=MsG0780040482.01.T01 |
| Chr7 | CDS | 78235019 | 78235374 | 78235019 | ID=MsG0780040482.01.T01:cds;Parent=MsG0780040482.01.T01 |
| Chr7 | CDS | 78233931 | 78234069 | 78233931 | ID=MsG0780040482.01.T01:cds;Parent=MsG0780040482.01.T01 |
| Gene Sequence |
| Protein sequence |
