AlfalfaGEDB | MsG0180004661.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004661.01

KEGG: K20285
GO: GO:0005515
PFAM: PF01344 PF13415 PF13418

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004661.01.T01	XP_013469070.2	95.532	649	22	1	1	649	1	642	0	1276

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004661.01.T01	Q5EA50	32.215	298	179	7	11	296	14	300	2.83E-41	157

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004661.01.T01	A0A396JTJ5	95.532	649	22	1	1	649	1	642	0.0	1276

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048258.01	MsG0180004661.01	0.830316	3.144916e-55	3.301651e-52
MsG0080048781.01	MsG0180004661.01	0.830374	3.043932e-55	3.201190e-52
MsG0080049140.01	MsG0180004661.01	0.857780	1.292987e-62	3.227613e-59
MsG0180000111.01	MsG0180004661.01	0.823818	1.128823e-53	9.825198e-51
MsG0180000314.01	MsG0180004661.01	0.819628	1.051066e-52	8.130909e-50
MsG0180000373.01	MsG0180004661.01	0.836630	8.362915e-57	1.059909e-53
MsG0180002211.01	MsG0180004661.01	0.823209	1.566988e-53	1.340489e-50
MsG0180002421.01	MsG0180004661.01	0.819861	9.299250e-53	7.241142e-50
MsG0180002583.01	MsG0180004661.01	0.811824	5.772057e-51	3.609490e-48
MsG0180003427.01	MsG0180004661.01	0.861017	1.378506e-63	3.843756e-60

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PPI

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Gene1	Gene2	Type
MsG0180004661.01	MsG0580029400.01	PPI
MsG0180004661.01	MsG0580029413.01	PPI
MsG0580024490.01	MsG0180004661.01	PPI
MsG0580029399.01	MsG0180004661.01	PPI
MsG0580029403.01	MsG0180004661.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004661.01.T01	MTR_1g084120	95.378	649	23	1	1	649	1	642	0.0	1242
MsG0180004661.01.T01	MTR_4g109680	35.669	314	178	10	22	321	19	322	3.66e-49	181
MsG0180004661.01.T01	MTR_4g109680	31.801	261	157	8	72	322	19	268	5.84e-35	140
MsG0180004661.01.T01	MTR_4g109680	32.000	225	143	5	15	232	65	286	5.28e-31	129
MsG0180004661.01.T01	MTR_7g113200	33.333	303	179	10	15	310	174	460	3.04e-35	142
MsG0180004661.01.T01	MTR_7g113200	30.622	209	133	6	11	212	276	479	1.33e-22	103
MsG0180004661.01.T01	MTR_7g113200	34.155	284	166	9	15	291	174	443	3.80e-35	139
MsG0180004661.01.T01	MTR_7g113200	30.583	206	131	6	11	209	276	476	4.98e-22	100
MsG0180004661.01.T01	MTR_1g090740	29.787	329	201	11	15	325	15	331	7.06e-33	133
MsG0180004661.01.T01	MTR_1g492850	29.412	306	185	8	22	306	14	309	7.24e-29	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004661.01.T01	AT1G74150	36.223	323	184	9	23	332	17	330	3.00e-53	192
MsG0180004661.01.T01	AT1G74150	31.119	286	178	8	14	291	61	335	2.85e-31	129
MsG0180004661.01.T01	AT1G74150	36.278	317	180	9	23	326	17	324	5.11e-53	192
MsG0180004661.01.T01	AT1G74150	30.824	279	160	11	63	322	1	265	1.22e-34	139
MsG0180004661.01.T01	AT1G74150	32.271	251	155	7	14	256	61	304	4.25e-31	129
MsG0180004661.01.T01	AT1G74150	36.278	317	180	9	23	326	17	324	6.27e-53	191
MsG0180004661.01.T01	AT1G74150	30.824	279	160	11	63	322	1	265	1.36e-34	139
MsG0180004661.01.T01	AT1G74150	32.271	251	155	7	14	256	61	304	5.41e-31	128
MsG0180004661.01.T01	AT1G18610	36.129	310	176	9	25	321	22	322	1.70e-52	190
MsG0180004661.01.T01	AT1G18610	31.746	252	159	6	12	256	62	307	2.87e-31	129

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Find 164 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAATGCTTCTGCCA+TGG	0.560581	1:-80960947	MsG0180004661.01.T01:CDS
AAAATATTCAAAATGTCCTT+AGG	0.427856	1:-80959876	MsG0180004661.01.T01:three_prime_UTR
AAAATCAGGAGTGACTTGCA+AGG	0.656845	1:-80960172	MsG0180004661.01.T01:CDS
AAAGAAGAAGAGATGAAGAA+AGG	0.439452	1:+80963785	None:intergenic
AAATATTGAGGAGGTTAATA+AGG	0.274112	1:-80960093	MsG0180004661.01.T01:three_prime_UTR
AAATGGACATAACAACTTAT+CGG	0.398694	1:-80961496	MsG0180004661.01.T01:CDS
AACACTAACAATTCATTCAA+AGG	0.530492	1:+80961540	None:intergenic
AACGTTATTGCAACGACATT+TGG	0.261258	1:-80961830	MsG0180004661.01.T01:CDS
AACTCCATCTCATAGTTCTA+AGG	0.405995	1:+80962651	None:intergenic
AAGAAGACCATCCTGGATGG+CGG	0.653485	1:-80961438	MsG0180004661.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGAAGAGATGAAGAA+AGG	+	Chr1:80959882-80959901	None:intergenic	30.0%
AATAAATCATCACGAGTAAG+TGG	+	Chr1:80961782-80961801	None:intergenic	30.0%
AATAAGCTTATTGTGTATGG+TGG	-	Chr1:80961101-80961120	MsG0180004661.01.T01:intron	30.0%
AATGGACATAACAACTTATC+GGG	-	Chr1:80962169-80962188	MsG0180004661.01.T01:intron	30.0%
ACACAATACTACATAACTCA+TGG	+	Chr1:80963643-80963662	None:intergenic	30.0%
ACCGATATTGTTATATATGG+CGG	-	Chr1:80961950-80961969	MsG0180004661.01.T01:intron	30.0%
AGCAAATTTCAAAAGCTTAC+AGG	+	Chr1:80963198-80963217	None:intergenic	30.0%
ATATCTAAGTTACCGTTGTA+TGG	+	Chr1:80963706-80963725	None:intergenic	30.0%
CAAGAACAATATCTTCATGT+TGG	-	Chr1:80962886-80962905	MsG0180004661.01.T01:CDS	30.0%
CATTAGAAAACCTGAATCAA+AGG	+	Chr1:80963130-80963149	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	80959864	80963822	80959864	ID=MsG0180004661.01;Name=MsG0180004661.01
Chr1	mRNA	80959864	80963822	80959864	ID=MsG0180004661.01.T01;Parent=MsG0180004661.01;Name=MsG0180004661.01.T01;_AED=0.48;_eAED=0.49;_QI=204\|0.87\|0.88\|1\|1\|1\|9\|262\|649
Chr1	exon	80959864	80960398	80959864	ID=MsG0180004661.01.T01:exon:34315;Parent=MsG0180004661.01.T01
Chr1	exon	80960489	80960593	80960489	ID=MsG0180004661.01.T01:exon:34314;Parent=MsG0180004661.01.T01
Chr1	exon	80960705	80961105	80960705	ID=MsG0180004661.01.T01:exon:34313;Parent=MsG0180004661.01.T01
Chr1	exon	80961175	80961268	80961175	ID=MsG0180004661.01.T01:exon:34312;Parent=MsG0180004661.01.T01
Chr1	exon	80961422	80961581	80961422	ID=MsG0180004661.01.T01:exon:34311;Parent=MsG0180004661.01.T01
Chr1	exon	80961714	80961880	80961714	ID=MsG0180004661.01.T01:exon:34310;Parent=MsG0180004661.01.T01
Chr1	exon	80962233	80962319	80962233	ID=MsG0180004661.01.T01:exon:34309;Parent=MsG0180004661.01.T01
Chr1	exon	80962496	80963026	80962496	ID=MsG0180004661.01.T01:exon:34308;Parent=MsG0180004661.01.T01
Chr1	exon	80963487	80963822	80963487	ID=MsG0180004661.01.T01:exon:34307;Parent=MsG0180004661.01.T01
Chr1	five_prime_UTR	80963619	80963822	80963619	ID=MsG0180004661.01.T01:five_prime_utr;Parent=MsG0180004661.01.T01
Chr1	CDS	80963487	80963618	80963487	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80962496	80963026	80962496	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80962233	80962319	80962233	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80961714	80961880	80961714	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80961422	80961581	80961422	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80961175	80961268	80961175	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80960705	80961105	80960705	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80960489	80960593	80960489	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	CDS	80960126	80960398	80960126	ID=MsG0180004661.01.T01:cds;Parent=MsG0180004661.01.T01
Chr1	three_prime_UTR	80959864	80960125	80959864	ID=MsG0180004661.01.T01:three_prime_utr;Parent=MsG0180004661.01.T01

Gene Sequence

>MsG0180004661.01.T01

ATGGAGTCTCTTCTTGCTGAAACTCCTAAGAAGAAAGCAATGTGGCTGTATCCCAAGGTTTTAGGGTTTAATCCTTCTCAAAGATGGGGTCACTCTGCTTGCTTCTCTGGAAGACTTATGTATATTTTTGGGGGATGTTGTGGAGGATTACATTTTAGTGATGTACTATGTTTGGACCTTGACAAAATGGAATGGAGCAAGGTTACTACAACAGGTGAAAAGCCAGGTCCTAGAGATAGCCATAGTGCTGTTCTTGTAGGACACAAAATGATAGTTTTTGGTGGTACAAATGGGTTCAAGAAAGTGAATGAAACTCATATACTTGATCTTTACACCAAAGAATGGATTAAGCCTAAATGTGAAGGGATACCACCTTCACCAAGGGAAAGTCACACTGCTACTCTTGTTGGTGGTGAAAGACTGGTAATTTTTGGTGGTAGTGGAGAAGGTGATGCAAATTATTTAAATGATTTGCATATTTTAGACCTTAGAACTATGAGATGGAGTTCTTTTCCTGAGGTTAAAGGTGATGTGCCTGTTCCTAGAGATAGTCATTGTACTCTTGCTATTGGGAATAAGCTTATTGTGTATGGTGGAGATAGTGGTGATCAGTATCATGGTGATGTAAGTTTGCTTGATATTGAAACAATGACTTGGACTAGGTTGAAAAATCAAGGTTCTTCACCAGGAGTCAGGGCAGGTCATGCAGCAGTGAATGTTGGAACTAAGGCAAGTGATTTTACTCATTCAGTATACATCATTGGAGGGGTCGGAGATAAACGTTATTGCAACGACATTTGGGTGTTTGACATACACACTTGTTTATGGTCTCAACTTGATATACATGGTCAACAGCCACAAGGACGGTTTTCTCATACCGCTGTTGTTGCAGACACCGATATTGTTATATATGGCGGGTGTGGGGAAGATGAACGTCCTTTGAATGAATTGTTAGTGTTGCAGCTTGCAGCAGAGCATCCAAATGGACATAACAACTTATCGGGGTGCAAAGTCTTCGGAAGTTATTGGAATCAAGAAAAGAAGACCATCCTGGATGGCGGAGTAGATACAAACACGAAAATTTCGCGTATCGGGAATAATGTGGAAGTCTTGGGAAAATGGGGTTATGGAGTTGCATCAGAGAAAGCACGACCGTGTCAATTTGATTCAGGAACTTCACAACAGAAGAGGAGGAGAATTGCTGCCACAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCCCTGTCTCAGCATTCATCTCCATCTCAATCTGATCAAGAACAGACTCCAGGTCAAAAACCAAATGCTTCTGCCATGGATTCTCAGCGATATCGCCGAGTCAAACTAGGCAATAAAACTCCAAGCACTTGTCAACTTGACAATTTCTCAAGTAACAAGAGATTTCTGAAGAATTTTACACAAATAAGTCAACAAGATCTTCATGTAATGGATCATCAACCAAAGCAAGAACAATATCTTCATGTTGGTGAAGATAAAAAAGGAGCTCGACTCCAAGCTTTAGAACCGAAGCCTGCCGGACGCGGATACACTCAACACTTGATTGGTACCGAAGTTCTTGGCAAAATTGATGGAGCCTTTGATTCAGGTTTTCTAATGACTGCAGTAGTGAATGGGAGACTTTTCAGAGGAGTTTTATTTGCACCTGGAGCAGGAGTAGCTGAGCCAAATTGTTTGTTTCCATCAAGTCAGCCTCTCATGAACTCAAATCATGTGGATAATTCGAGGAATTCAGAGAAAGTAACTAACTGTTCGCGTTTAGAGCCGTGCTATGCCCTAAAGCAACCACTACTTGCTCGACCGTCTCCAATCATAAAAGGAACTAATACAGTGTCTTTACCCGGAGAACATAAAATCAGGAGTGACTTGCAAGGTTTGGCTTTAACACTAGGAGGGCCTGCAAGTGGAAATAATGCTTGA

Protein sequence

>MsG0180004661.01.T01

MESLLAETPKKKAMWLYPKVLGFNPSQRWGHSACFSGRLMYIFGGCCGGLHFSDVLCLDLDKMEWSKVTTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNETHILDLYTKEWIKPKCEGIPPSPRESHTATLVGGERLVIFGGSGEGDANYLNDLHILDLRTMRWSSFPEVKGDVPVPRDSHCTLAIGNKLIVYGGDSGDQYHGDVSLLDIETMTWTRLKNQGSSPGVRAGHAAVNVGTKASDFTHSVYIIGGVGDKRYCNDIWVFDIHTCLWSQLDIHGQQPQGRFSHTAVVADTDIVIYGGCGEDERPLNELLVLQLAAEHPNGHNNLSGCKVFGSYWNQEKKTILDGGVDTNTKISRIGNNVEVLGKWGYGVASEKARPCQFDSGTSQQKRRRIAATKVWDVESEQEEHSLSLSQHSSPSQSDQEQTPGQKPNASAMDSQRYRRVKLGNKTPSTCQLDNFSSNKRFLKNFTQISQQDLHVMDHQPKQEQYLHVGEDKKGARLQALEPKPAGRGYTQHLIGTEVLGKIDGAFDSGFLMTAVVNGRLFRGVLFAPGAGVAEPNCLFPSSQPLMNSNHVDNSRNSEKVTNCSRLEPCYALKQPLLARPSPIIKGTNTVSLPGEHKIRSDLQGLALTLGGPASGNNA*