AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004754.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004754.01.T01 MTR_1g086170 97.279 441 12 0 1 441 1 441 0.0 904
MsG0180004754.01.T01 MTR_2g072850 59.511 368 145 3 80 445 3 368 6.98e-160 458
MsG0180004754.01.T01 MTR_2g072880 57.576 66 28 0 15 80 19 84 3.76e-20 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004754.01.T01 AT2G47010 65.727 461 125 8 3 442 2 450 0.0 619
MsG0180004754.01.T01 AT2G47010 65.727 461 125 8 3 442 2 450 0.0 619
MsG0180004754.01.T01 AT2G47010 65.727 461 125 8 3 442 2 450 0.0 618
MsG0180004754.01.T01 AT1G17030 57.112 464 174 8 1 445 1 458 0.0 528

Find 104 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAGGCCATGGCAATTT+TGG 0.120315 1:+82257043 MsG0180004754.01.T01:CDS
CTACACCAAGCTGGAGTTTC+TGG 0.122724 1:-82258155 None:intergenic
GTTAACCTCACCTTAAAATT+TGG 0.172698 1:-82257993 None:intergenic
AGTTATTGCCTCATCCTATT+TGG 0.205690 1:+82258369 MsG0180004754.01.T01:CDS
GTTCAAAAGGAACTGTATTT+AGG 0.209727 1:+82256997 MsG0180004754.01.T01:CDS
CCAGGAAGGTTTCCTTGTTT+TGG 0.219496 1:+82257147 MsG0180004754.01.T01:CDS
AGACCATCTCTTTGCATTCC+TGG 0.226808 1:-82256563 None:intergenic
TCTATATTGTTTATGTCTTC+TGG 0.232699 1:-82256964 None:intergenic
GTTATTGCCTCATCCTATTT+GGG 0.237651 1:+82258370 MsG0180004754.01.T01:CDS
GGAAACCTTCCTGGTTTAAA+AGG 0.250546 1:-82257138 None:intergenic
TCCTCCTTTCTTGACATCTA+AGG 0.253365 1:-82258015 None:intergenic
TAATAGTGATATGCTGAATA+AGG 0.262739 1:-82258260 None:intergenic
TGGTGTAGCCCTACAGGTTT+AGG 0.275062 1:+82258170 MsG0180004754.01.T01:CDS
AACATGCTCCTTTGCCTTTG+AGG 0.283272 1:+82256420 None:intergenic
ATTTAATGGTACTTATGATT+TGG 0.292790 1:+82257242 MsG0180004754.01.T01:CDS
CATCCTATTTGGGGTGAGTA+TGG 0.309343 1:+82258380 MsG0180004754.01.T01:CDS
TATGTCCTCAAGATGGTAAA+AGG 0.317835 1:+82257109 MsG0180004754.01.T01:CDS
CCAAAACAAGGAAACCTTCC+TGG 0.324704 1:-82257147 None:intergenic
ATATGCTGAATAAGGGAAAT+TGG 0.330681 1:-82258252 None:intergenic
TGTGCTTGAGGATTACTATA+AGG 0.345328 1:-82258335 None:intergenic
GTAATGAGAGGAGGATTTAA+TGG 0.352289 1:+82257228 MsG0180004754.01.T01:CDS
GACCATCTCTTTGCATTCCT+GGG 0.357904 1:-82256562 None:intergenic
GCATTCCCCTTGTGTCATAA+TGG 0.362536 1:-82257449 None:intergenic
TAACCATACTCACCCCAAAT+AGG 0.368213 1:-82258383 None:intergenic
TTGAGAGCTGATACAGTTAG+TGG 0.369320 1:+82257411 MsG0180004754.01.T01:CDS
TCAAAACATTCAGCTGCTCT+TGG 0.404310 1:-82256653 None:intergenic
GGGTTGGTGATGCAAGGACT+TGG 0.408731 1:+82258429 MsG0180004754.01.T01:CDS
GATTCTAGTTGTAGAGATAG+TGG 0.419018 1:+82257264 MsG0180004754.01.T01:CDS
CCAGCTTGGTGTAGCCCTAC+AGG 0.419351 1:+82258164 MsG0180004754.01.T01:CDS
ATCCAAAATTGCCATGGCCT+TGG 0.420714 1:-82257045 None:intergenic
TAAGAGTAGCCTTCGAAGCT+TGG 0.430314 1:+82256585 MsG0180004754.01.T01:CDS
GGGAGAAGAAAGTTAATGTT+GGG 0.436644 1:+82257328 MsG0180004754.01.T01:CDS
TAAGGATCACAAGTACTAAC+AGG 0.438806 1:-82258317 None:intergenic
AACAACTTCCCATGTCTAGA+AGG 0.439967 1:-82258058 None:intergenic
GGAAATTATGACACTAGGTC+TGG 0.453514 1:+82257084 MsG0180004754.01.T01:CDS
CTAGCAAGTAGACTTCTATC+AGG 0.454209 1:+82258470 MsG0180004754.01.T01:CDS
TTCTAGACATGGGAAGTTGT+TGG 0.455499 1:+82258060 MsG0180004754.01.T01:CDS
AATAGTGATATGCTGAATAA+GGG 0.459467 1:-82258259 None:intergenic
TGTCCATTGATGACAGAAGA+TGG 0.460144 1:-82257190 None:intergenic
TGGGAGAAGAAAGTTAATGT+TGG 0.466322 1:+82257327 MsG0180004754.01.T01:CDS
GTCTCCTACAGCTGAGACAT+TGG 0.469452 1:-82256540 None:intergenic
AGACTTCAAAGAAATATCCT+TGG 0.482604 1:+82257376 MsG0180004754.01.T01:CDS
GATACAGTTAGTGGATTCTC+TGG 0.484218 1:+82257420 MsG0180004754.01.T01:CDS
AGATCTTTATGCTGTTCAAA+AGG 0.484340 1:+82256984 MsG0180004754.01.T01:CDS
AGAAAGTTAATGTTGGGAGT+TGG 0.491514 1:+82257334 MsG0180004754.01.T01:CDS
TAGAAGGTAGAATTGACTCT+TGG 0.493404 1:-82258042 None:intergenic
CAAAACATTCAGCTGCTCTT+GGG 0.494665 1:-82256652 None:intergenic
TGAACTATCTCTTGTGCTTG+AGG 0.503738 1:-82258347 None:intergenic
AACCCATCTTCTGTCATCAA+TGG 0.504979 1:+82257187 MsG0180004754.01.T01:CDS
ATGGTTGGGTTGGTGATGCA+AGG 0.505505 1:+82258423 MsG0180004754.01.T01:CDS
ATGTCTTCTGGTCTCAGACC+AGG 0.512031 1:-82256952 None:intergenic
TTATTGCCTCATCCTATTTG+GGG 0.515055 1:+82258371 MsG0180004754.01.T01:CDS
TATCACTATTACTGTGCTCC+AGG 0.516398 1:+82258272 MsG0180004754.01.T01:CDS
CTGATAGAAGTCTACTTGCT+AGG 0.521268 1:-82258469 None:intergenic
TTAAAATTTGGTGACTCAAG+AGG 0.526844 1:-82257981 None:intergenic
GGACAATTTCCTAAACCTGT+AGG 0.530293 1:-82258179 None:intergenic
TCATCTGGTGTGATATGAAA+TGG 0.531286 1:-82258203 None:intergenic
CTGTCATCAATGGACAAAGC+TGG 0.533115 1:+82257197 MsG0180004754.01.T01:CDS
ATGTCCTCAAGATGGTAAAA+GGG 0.535714 1:+82257110 MsG0180004754.01.T01:CDS
CCTGTAGGGCTACACCAAGC+TGG 0.537936 1:-82258164 None:intergenic
CAGACCAATGTCTCAGCTGT+AGG 0.540258 1:+82256536 MsG0180004754.01.T01:CDS
ACTTGGGAACTTGATGTTGG+TGG 0.540896 1:+82258446 MsG0180004754.01.T01:CDS
TCTAAATGTTGAGCATTGCC+TGG 0.545866 1:-82258290 None:intergenic
GGTTGGTGATGCAAGGACTT+GGG 0.546921 1:+82258430 MsG0180004754.01.T01:CDS
GACAATTTCCTAAACCTGTA+GGG 0.548248 1:-82258178 None:intergenic
AACAATGGTGCACCTTGTGA+TGG 0.559983 1:+82258086 MsG0180004754.01.T01:CDS
GTCTCAGCTGTAGGAGACCC+AGG 0.562074 1:+82256545 MsG0180004754.01.T01:CDS
AACCTTCCTGGTTTAAAAGG+AGG 0.568580 1:-82257135 None:intergenic
AAAGTTAACAAACTTGGTGT+AGG 0.571771 1:+82256919 MsG0180004754.01.T01:CDS
GTCCATTGATGACAGAAGAT+GGG 0.572666 1:-82257189 None:intergenic
TTAACCTTAGATGTCAAGAA+AGG 0.573621 1:+82258011 MsG0180004754.01.T01:CDS
TGGTCAAGAAGCTCCTCACA+TGG 0.581869 1:+82256625 MsG0180004754.01.T01:CDS
TTAGATGTCAAGAAAGGAGG+AGG 0.583402 1:+82258017 MsG0180004754.01.T01:CDS
ATTGATGACAGAAGATGGGT+TGG 0.585027 1:-82257185 None:intergenic
TCAATTCTACCTTCTAGACA+TGG 0.588399 1:+82258049 MsG0180004754.01.T01:CDS
GCTCTTGGGCTACCCATGTG+AGG 0.591146 1:-82256638 None:intergenic
AGGACTTGGGAACTTGATGT+TGG 0.596427 1:+82258443 MsG0180004754.01.T01:CDS
GACCCAGGAATGCAAAGAGA+TGG 0.596905 1:+82256560 MsG0180004754.01.T01:CDS
TTAAAGACACACCAAGGCCA+TGG 0.597630 1:+82257034 MsG0180004754.01.T01:CDS
CTGGAAGGTGATGTAATGAG+AGG 0.599493 1:+82257216 MsG0180004754.01.T01:CDS
ATGCATCCTGTTCCAAAACA+AGG 0.602446 1:-82257159 None:intergenic
TACTCACCCCAAATAGGATG+AGG 0.607321 1:-82258377 None:intergenic
AAAATGGAAATTATGACACT+AGG 0.613148 1:+82257079 MsG0180004754.01.T01:CDS
TCAATCCAGAAACTCCAGCT+TGG 0.614056 1:+82258150 MsG0180004754.01.T01:CDS
GGTGTAGGAGAGTCATTACC+TGG 0.615130 1:+82256934 MsG0180004754.01.T01:CDS
TCTGGTTTATGTCCTCAAGA+TGG 0.622613 1:+82257102 MsG0180004754.01.T01:CDS
CATCAATGGACAAAGCTGGA+AGG 0.623235 1:+82257201 MsG0180004754.01.T01:CDS
ACAGTTAGTGGATTCTCTGG+TGG 0.623686 1:+82257423 MsG0180004754.01.T01:CDS
ATTATCATCCAAAATTGCCA+TGG 0.624144 1:-82257051 None:intergenic
ACCTTAGATGTCAAGAAAGG+AGG 0.624457 1:+82258014 MsG0180004754.01.T01:CDS
GAAGGTGATGTAATGAGAGG+AGG 0.628897 1:+82257219 MsG0180004754.01.T01:CDS
ATGAGTTGTGGACACAAGAG+AGG 0.634235 1:-82256510 None:intergenic
GTGGTTACCATTATGACACA+AGG 0.639125 1:+82257442 MsG0180004754.01.T01:CDS
GCCAGGTTCTCTGATTCACA+AGG 0.645424 1:+82256888 MsG0180004754.01.T01:intron
CAATTCTACCTTCTAGACAT+GGG 0.645465 1:+82258050 MsG0180004754.01.T01:CDS
CTCAAGTAAAGCATCAACCA+AGG 0.657316 1:-82257393 None:intergenic
TCTGGTGTGATATGAAATGG+TGG 0.678495 1:-82258200 None:intergenic
GGTTACCATTATGACACAAG+GGG 0.678691 1:+82257444 MsG0180004754.01.T01:CDS
GGTCAAGAAGCTCCTCACAT+GGG 0.681692 1:+82256626 MsG0180004754.01.T01:CDS
GTTAGTACATCTCCATCACA+AGG 0.685016 1:-82258098 None:intergenic
TGGTTACCATTATGACACAA+GGG 0.690726 1:+82257443 MsG0180004754.01.T01:CDS
ATTGGTCTGAGAATGAGTTG+TGG 0.699603 1:-82256522 None:intergenic
GGAAGTTGTTGGAAGAACAA+TGG 0.714098 1:+82258071 MsG0180004754.01.T01:CDS
GTGAAGTTAAAGACACACCA+AGG 0.745244 1:+82257028 MsG0180004754.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGACTGATTATTAATT+TGG + Chr1:82257918-82257937 MsG0180004754.01.T01:intron 15.0%
!! CTCAACTTTAAATAAAATTT+AGG + Chr1:82256780-82256799 MsG0180004754.01.T01:intron 15.0%
!!! TAAAAATAGAAGAAATTTTG+AGG - Chr1:82256734-82256753 None:intergenic 15.0%
!! AATTAAAATTGAACAGAACA+AGG - Chr1:82257605-82257624 None:intergenic 20.0%
!! AGGACTAAAATGAAATATTA+GGG - Chr1:82256714-82256733 None:intergenic 20.0%
!! ATTTAATGGTACTTATGATT+TGG + Chr1:82257242-82257261 MsG0180004754.01.T01:CDS 20.0%
!!! ATATCTTTTGTTAGTTAGAT+TGG - Chr1:82257795-82257814 None:intergenic 20.0%
!!! GAATTGAAAATTTGAAACAT+AGG - Chr1:82257510-82257529 None:intergenic 20.0%
!!! TAACAATCTTTCATTTTATG+AGG + Chr1:82257299-82257318 MsG0180004754.01.T01:CDS 20.0%
!!! TTCCATTAATGTATTTTGTT+TGG + Chr1:82257624-82257643 MsG0180004754.01.T01:intron 20.0%
!!! TTTGGACTAAACAAAAATTT+TGG + Chr1:82257642-82257661 MsG0180004754.01.T01:intron 20.0%
! AAAATGGAAATTATGACACT+AGG + Chr1:82257079-82257098 MsG0180004754.01.T01:CDS 25.0%
! AATAGTGATATGCTGAATAA+GGG - Chr1:82258262-82258281 None:intergenic 25.0%
! ACAGAAAAAGTTAACAAACT+TGG + Chr1:82256913-82256932 MsG0180004754.01.T01:CDS 25.0%
! GAGGACTAAAATGAAATATT+AGG - Chr1:82256715-82256734 None:intergenic 25.0%
! GGCTGAAATTTAAACTAAAA+TGG - Chr1:82257963-82257982 None:intergenic 25.0%
! GTCCAAACAAAATACATTAA+TGG - Chr1:82257629-82257648 None:intergenic 25.0%
! TAATAGTGATATGCTGAATA+AGG - Chr1:82258263-82258282 None:intergenic 25.0%
! TATGGTTATCCCATTAAAAA+AGG + Chr1:82258398-82258417 MsG0180004754.01.T01:CDS 25.0%
! TCTATATTGTTTATGTCTTC+TGG - Chr1:82256967-82256986 None:intergenic 25.0%
!! TGGATGATAATGCTAAAAAA+TGG + Chr1:82257063-82257082 MsG0180004754.01.T01:CDS 25.0%
!! TTTATTTAAAGTTGAGAACC+TGG - Chr1:82256776-82256795 None:intergenic 25.0%
!!! CTGAATATTTTTTTGTCATC+TGG - Chr1:82258221-82258240 None:intergenic 25.0%
!!! TTTTAGTCTTTAAATGTGTG+AGG - Chr1:82257902-82257921 None:intergenic 25.0%
AAAATTGAACAGAACAAGGA+GGG - Chr1:82257601-82257620 None:intergenic 30.0%
AGACTTCAAAGAAATATCCT+TGG + Chr1:82257376-82257395 MsG0180004754.01.T01:CDS 30.0%
AGATCTTTATGCTGTTCAAA+AGG + Chr1:82256984-82257003 MsG0180004754.01.T01:CDS 30.0%
ATATGCTGAATAAGGGAAAT+TGG - Chr1:82258255-82258274 None:intergenic 30.0%
ATTATCATCCAAAATTGCCA+TGG - Chr1:82257054-82257073 None:intergenic 30.0%
GATACATTCAGAAACTAAAG+TGG - Chr1:82257691-82257710 None:intergenic 30.0%
GTTAACCTCACCTTAAAATT+TGG - Chr1:82257996-82258015 None:intergenic 30.0%
GTTCAAAAGGAACTGTATTT+AGG + Chr1:82256997-82257016 MsG0180004754.01.T01:CDS 30.0%
TAAAATTGAACAGAACAAGG+AGG - Chr1:82257602-82257621 None:intergenic 30.0%
TATCCCATTAAAAAAGGTGA+TGG + Chr1:82258404-82258423 MsG0180004754.01.T01:CDS 30.0%
TTAACCTTAGATGTCAAGAA+AGG + Chr1:82258011-82258030 MsG0180004754.01.T01:CDS 30.0%
! CAATCTTTCATTTTATGAGG+TGG + Chr1:82257302-82257321 MsG0180004754.01.T01:CDS 30.0%
! CATTAAAAAAGGTGATGGTT+GGG + Chr1:82258409-82258428 MsG0180004754.01.T01:CDS 30.0%
! TCTTGAGTCACCAAATTTTA+AGG + Chr1:82257983-82258002 MsG0180004754.01.T01:CDS 30.0%
! TGGAATTTTTGCAATGAAGT+TGG + Chr1:82256605-82256624 MsG0180004754.01.T01:CDS 30.0%
! TTAAAATTTGGTGACTCAAG+AGG - Chr1:82257984-82258003 None:intergenic 30.0%
! TTCATTTTATGAGGTGGTTT+GGG + Chr1:82257308-82257327 MsG0180004754.01.T01:CDS 30.0%
! TTTCATTTTATGAGGTGGTT+TGG + Chr1:82257307-82257326 MsG0180004754.01.T01:CDS 30.0%
! TTTGAAACATAGGATTCTGA+AGG - Chr1:82257500-82257519 None:intergenic 30.0%
!! AAAGTTAACAAACTTGGTGT+AGG + Chr1:82256919-82256938 MsG0180004754.01.T01:CDS 30.0%
!!! CAACCATCACCTTTTTTAAT+GGG - Chr1:82258410-82258429 None:intergenic 30.0%
!!! GAATGTTTTGATCTTTCACA+AGG + Chr1:82256665-82256684 MsG0180004754.01.T01:CDS 30.0%
!!! TTTTTTGTTGTTGTATGACC+AGG + Chr1:82256755-82256774 MsG0180004754.01.T01:intron 30.0%
AGAAAGTTAATGTTGGGAGT+TGG + Chr1:82257334-82257353 MsG0180004754.01.T01:CDS 35.0%
AGTTATTGCCTCATCCTATT+TGG + Chr1:82258369-82258388 MsG0180004754.01.T01:CDS 35.0%
ATGTCCTCAAGATGGTAAAA+GGG + Chr1:82257110-82257129 MsG0180004754.01.T01:CDS 35.0%
CAATTCTACCTTCTAGACAT+GGG + Chr1:82258050-82258069 MsG0180004754.01.T01:CDS 35.0%
CACACTTCGAAATGTTTATG+TGG - Chr1:82257718-82257737 None:intergenic 35.0%
GACAATTTCCTAAACCTGTA+GGG - Chr1:82258181-82258200 None:intergenic 35.0%
GGGAGAAGAAAGTTAATGTT+GGG + Chr1:82257328-82257347 MsG0180004754.01.T01:CDS 35.0%
GTAATGAGAGGAGGATTTAA+TGG + Chr1:82257228-82257247 MsG0180004754.01.T01:CDS 35.0%
GTTATTGCCTCATCCTATTT+GGG + Chr1:82258370-82258389 MsG0180004754.01.T01:CDS 35.0%
TAAGGATCACAAGTACTAAC+AGG - Chr1:82258320-82258339 None:intergenic 35.0%
TATGTCCTCAAGATGGTAAA+AGG + Chr1:82257109-82257128 MsG0180004754.01.T01:CDS 35.0%
TCAATTCTACCTTCTAGACA+TGG + Chr1:82258049-82258068 MsG0180004754.01.T01:CDS 35.0%
TCATCTGGTGTGATATGAAA+TGG - Chr1:82258206-82258225 None:intergenic 35.0%
TGGGAGAAGAAAGTTAATGT+TGG + Chr1:82257327-82257346 MsG0180004754.01.T01:CDS 35.0%
TGGTTACCATTATGACACAA+GGG + Chr1:82257443-82257462 MsG0180004754.01.T01:CDS 35.0%
TGTGCTTGAGGATTACTATA+AGG - Chr1:82258338-82258357 None:intergenic 35.0%
TTATTGCCTCATCCTATTTG+GGG + Chr1:82258371-82258390 MsG0180004754.01.T01:CDS 35.0%
TTTGAGGAAAAAAGAGGCAA+TGG + Chr1:82256436-82256455 MsG0180004754.01.T01:exon 35.0%
! ACATAGGATTCTGAAGGAAA+TGG - Chr1:82257494-82257513 None:intergenic 35.0%
! CCATTAAAAAAGGTGATGGT+TGG + Chr1:82258408-82258427 MsG0180004754.01.T01:CDS 35.0%
! GATTCTAGTTGTAGAGATAG+TGG + Chr1:82257264-82257283 MsG0180004754.01.T01:CDS 35.0%
! TAGAAGGTAGAATTGACTCT+TGG - Chr1:82258045-82258064 None:intergenic 35.0%
!!! AGTCACCAAATTTTAAGGTG+AGG + Chr1:82257988-82258007 MsG0180004754.01.T01:CDS 35.0%
!!! ATTGCCTCTTTTTTCCTCAA+AGG - Chr1:82256437-82256456 None:intergenic 35.0%
!!! CCAACCATCACCTTTTTTAA+TGG - Chr1:82258411-82258430 None:intergenic 35.0%
AACAACTTCCCATGTCTAGA+AGG - Chr1:82258061-82258080 None:intergenic 40.0%
AACCCATCTTCTGTCATCAA+TGG + Chr1:82257187-82257206 MsG0180004754.01.T01:CDS 40.0%
AACCTTCCTGGTTTAAAAGG+AGG - Chr1:82257138-82257157 None:intergenic 40.0%
ACAACGGTTCAAAATCACCT+CGG - Chr1:82256862-82256881 None:intergenic 40.0%
ACCTTAGATGTCAAGAAAGG+AGG + Chr1:82258014-82258033 MsG0180004754.01.T01:CDS 40.0%
AGAACCTGGCAATACAACAA+CGG - Chr1:82256878-82256897 None:intergenic 40.0%
ATGCATCCTGTTCCAAAACA+AGG - Chr1:82257162-82257181 None:intergenic 40.0%
CAAAACATTCAGCTGCTCTT+GGG - Chr1:82256655-82256674 None:intergenic 40.0%
CTAGCAAGTAGACTTCTATC+AGG + Chr1:82258470-82258489 MsG0180004754.01.T01:CDS 40.0%
CTGATAGAAGTCTACTTGCT+AGG - Chr1:82258472-82258491 None:intergenic 40.0%
GCAAAAATTCCAAGCTTCGA+AGG - Chr1:82256597-82256616 None:intergenic 40.0%
GGAAACCTTCCTGGTTTAAA+AGG - Chr1:82257141-82257160 None:intergenic 40.0%
GGAAATTATGACACTAGGTC+TGG + Chr1:82257084-82257103 MsG0180004754.01.T01:CDS 40.0%
GGAAGTTGTTGGAAGAACAA+TGG + Chr1:82258071-82258090 MsG0180004754.01.T01:CDS 40.0%
GGACAATTTCCTAAACCTGT+AGG - Chr1:82258182-82258201 None:intergenic 40.0%
GGCAAACACATCACACATTT+AGG - Chr1:82257670-82257689 None:intergenic 40.0%
GGTTACCATTATGACACAAG+GGG + Chr1:82257444-82257463 MsG0180004754.01.T01:CDS 40.0%
GTGAAGTTAAAGACACACCA+AGG + Chr1:82257028-82257047 MsG0180004754.01.T01:CDS 40.0%
GTGGTTACCATTATGACACA+AGG + Chr1:82257442-82257461 MsG0180004754.01.T01:CDS 40.0%
GTGTCTCTTGTTAGTCACTT+TGG - Chr1:82257827-82257846 None:intergenic 40.0%
GTTAGTACATCTCCATCACA+AGG - Chr1:82258101-82258120 None:intergenic 40.0%
TAACCATACTCACCCCAAAT+AGG - Chr1:82258386-82258405 None:intergenic 40.0%
TATCACTATTACTGTGCTCC+AGG + Chr1:82258272-82258291 MsG0180004754.01.T01:CDS 40.0%
TCAAAACATTCAGCTGCTCT+TGG - Chr1:82256656-82256675 None:intergenic 40.0%
TCCTCCTTTCTTGACATCTA+AGG - Chr1:82258018-82258037 None:intergenic 40.0%
TCTGGTGTGATATGAAATGG+TGG - Chr1:82258203-82258222 None:intergenic 40.0%
TGAACTATCTCTTGTGCTTG+AGG - Chr1:82258350-82258369 None:intergenic 40.0%
TTAGATGTCAAGAAAGGAGG+AGG + Chr1:82258017-82258036 MsG0180004754.01.T01:CDS 40.0%
TTCTAGACATGGGAAGTTGT+TGG + Chr1:82258060-82258079 MsG0180004754.01.T01:CDS 40.0%
TTGAGAGCTGATACAGTTAG+TGG + Chr1:82257411-82257430 MsG0180004754.01.T01:CDS 40.0%
! AAAAAAGGTGATGGTTGGGT+TGG + Chr1:82258413-82258432 MsG0180004754.01.T01:CDS 40.0%
! ATTGATGACAGAAGATGGGT+TGG - Chr1:82257188-82257207 None:intergenic 40.0%
! ATTGGTCTGAGAATGAGTTG+TGG - Chr1:82256525-82256544 None:intergenic 40.0%
! CTCAAGTAAAGCATCAACCA+AGG - Chr1:82257396-82257415 None:intergenic 40.0%
! GTCCATTGATGACAGAAGAT+GGG - Chr1:82257192-82257211 None:intergenic 40.0%
! TACCTCCTTTTAAACCAGGA+AGG + Chr1:82257133-82257152 MsG0180004754.01.T01:CDS 40.0%
! TCATTTTACAACTGTCTCCG+AGG + Chr1:82256842-82256861 MsG0180004754.01.T01:intron 40.0%
! TCTAAATGTTGAGCATTGCC+TGG - Chr1:82258293-82258312 None:intergenic 40.0%
! TCTGGTTTATGTCCTCAAGA+TGG + Chr1:82257102-82257121 MsG0180004754.01.T01:CDS 40.0%
! TGTCCATTGATGACAGAAGA+TGG - Chr1:82257193-82257212 None:intergenic 40.0%
!! GATACAGTTAGTGGATTCTC+TGG + Chr1:82257420-82257439 MsG0180004754.01.T01:CDS 40.0%
!!! AGGTTTCCTTGTTTTGGAAC+AGG + Chr1:82257153-82257172 MsG0180004754.01.T01:CDS 40.0%
AACAATGGTGCACCTTGTGA+TGG + Chr1:82258086-82258105 MsG0180004754.01.T01:CDS 45.0%
ACCTTGTGAATCAGAGAACC+TGG - Chr1:82256892-82256911 None:intergenic 45.0%
ACTTGGGAACTTGATGTTGG+TGG + Chr1:82258446-82258465 MsG0180004754.01.T01:CDS 45.0%
AGACCATCTCTTTGCATTCC+TGG - Chr1:82256566-82256585 None:intergenic 45.0%
AGGACTTGGGAACTTGATGT+TGG + Chr1:82258443-82258462 MsG0180004754.01.T01:CDS 45.0%
ATCCAAAATTGCCATGGCCT+TGG - Chr1:82257048-82257067 None:intergenic 45.0%
ATGAGTTGTGGACACAAGAG+AGG - Chr1:82256513-82256532 None:intergenic 45.0%
CATCAATGGACAAAGCTGGA+AGG + Chr1:82257201-82257220 MsG0180004754.01.T01:CDS 45.0%
CCAAAACAAGGAAACCTTCC+TGG - Chr1:82257150-82257169 None:intergenic 45.0%
CTGGAAGGTGATGTAATGAG+AGG + Chr1:82257216-82257235 MsG0180004754.01.T01:CDS 45.0%
CTGTCATCAATGGACAAAGC+TGG + Chr1:82257197-82257216 MsG0180004754.01.T01:CDS 45.0%
GAAGGTGATGTAATGAGAGG+AGG + Chr1:82257219-82257238 MsG0180004754.01.T01:CDS 45.0%
GACCATCTCTTTGCATTCCT+GGG - Chr1:82256565-82256584 None:intergenic 45.0%
GCATTCCCCTTGTGTCATAA+TGG - Chr1:82257452-82257471 None:intergenic 45.0%
TAAGAGTAGCCTTCGAAGCT+TGG + Chr1:82256585-82256604 MsG0180004754.01.T01:CDS 45.0%
TACTCACCCCAAATAGGATG+AGG - Chr1:82258380-82258399 None:intergenic 45.0%
TCAATCCAGAAACTCCAGCT+TGG + Chr1:82258150-82258169 MsG0180004754.01.T01:CDS 45.0%
TGAACCGTTGTTGTATTGCC+AGG + Chr1:82256871-82256890 MsG0180004754.01.T01:intron 45.0%
TTAAAGACACACCAAGGCCA+TGG + Chr1:82257034-82257053 MsG0180004754.01.T01:CDS 45.0%
! CATCCTATTTGGGGTGAGTA+TGG + Chr1:82258380-82258399 MsG0180004754.01.T01:CDS 45.0%
! GGTACCCTTTTACCATCTTG+AGG - Chr1:82257117-82257136 None:intergenic 45.0%
!! ACAGTTAGTGGATTCTCTGG+TGG + Chr1:82257423-82257442 MsG0180004754.01.T01:CDS 45.0%
!! AGGGTACCTCCTTTTAAACC+AGG + Chr1:82257129-82257148 MsG0180004754.01.T01:CDS 45.0%
!! CCAGGAAGGTTTCCTTGTTT+TGG + Chr1:82257147-82257166 MsG0180004754.01.T01:CDS 45.0%
ATGTCTTCTGGTCTCAGACC+AGG - Chr1:82256955-82256974 None:intergenic 50.0%
CAGACCAATGTCTCAGCTGT+AGG + Chr1:82256536-82256555 MsG0180004754.01.T01:CDS 50.0%
CTACACCAAGCTGGAGTTTC+TGG - Chr1:82258158-82258177 None:intergenic 50.0%
GACCCAGGAATGCAAAGAGA+TGG + Chr1:82256560-82256579 MsG0180004754.01.T01:CDS 50.0%
GCCAGGTTCTCTGATTCACA+AGG + Chr1:82256888-82256907 MsG0180004754.01.T01:intron 50.0%
GGTCAAGAAGCTCCTCACAT+GGG + Chr1:82256626-82256645 MsG0180004754.01.T01:CDS 50.0%
GGTGTAGGAGAGTCATTACC+TGG + Chr1:82256934-82256953 MsG0180004754.01.T01:CDS 50.0%
GTCTCCTACAGCTGAGACAT+TGG - Chr1:82256543-82256562 None:intergenic 50.0%
TGGTCAAGAAGCTCCTCACA+TGG + Chr1:82256625-82256644 MsG0180004754.01.T01:CDS 50.0%
TGGTGTAGCCCTACAGGTTT+AGG + Chr1:82258170-82258189 MsG0180004754.01.T01:CDS 50.0%
! CACCAAGGCCATGGCAATTT+TGG + Chr1:82257043-82257062 MsG0180004754.01.T01:CDS 50.0%
!! ATGGTTGGGTTGGTGATGCA+AGG + Chr1:82258423-82258442 MsG0180004754.01.T01:CDS 50.0%
!! GGTTGGTGATGCAAGGACTT+GGG + Chr1:82258430-82258449 MsG0180004754.01.T01:CDS 50.0%
!! GGGTTGGTGATGCAAGGACT+TGG + Chr1:82258429-82258448 MsG0180004754.01.T01:CDS 55.0%
CCTGTAGGGCTACACCAAGC+TGG - Chr1:82258167-82258186 None:intergenic 60.0%
GCTCTTGGGCTACCCATGTG+AGG - Chr1:82256641-82256660 None:intergenic 60.0%
GTCTCAGCTGTAGGAGACCC+AGG + Chr1:82256545-82256564 MsG0180004754.01.T01:CDS 60.0%
!! CCAGCTTGGTGTAGCCCTAC+AGG + Chr1:82258164-82258183 MsG0180004754.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82256433 82258499 82256433 ID=MsG0180004754.01;Name=MsG0180004754.01
Chr1 mRNA 82256433 82258499 82256433 ID=MsG0180004754.01.T01;Parent=MsG0180004754.01;Name=MsG0180004754.01.T01;_AED=0.30;_eAED=0.31;_QI=22|1|0.66|1|1|1|3|0|445
Chr1 exon 82256433 82256686 82256433 ID=MsG0180004754.01.T01:exon:27195;Parent=MsG0180004754.01.T01
Chr1 exon 82256893 82257479 82256893 ID=MsG0180004754.01.T01:exon:27196;Parent=MsG0180004754.01.T01
Chr1 exon 82257981 82258499 82257981 ID=MsG0180004754.01.T01:exon:27197;Parent=MsG0180004754.01.T01
Chr1 five_prime_UTR 82256433 82256454 82256433 ID=MsG0180004754.01.T01:five_prime_utr;Parent=MsG0180004754.01.T01
Chr1 CDS 82256455 82256686 82256455 ID=MsG0180004754.01.T01:cds;Parent=MsG0180004754.01.T01
Chr1 CDS 82256893 82257479 82256893 ID=MsG0180004754.01.T01:cds;Parent=MsG0180004754.01.T01
Chr1 CDS 82257981 82258499 82257981 ID=MsG0180004754.01.T01:cds;Parent=MsG0180004754.01.T01
Gene Sequence

>MsG0180004754.01.T01

ATGGAGAAACAGTTGAAGAAGTTGTTTGTGTTAACAAATGTACTTCTTTTATGTGCCTCTCTTGTGTCCACAACTCATTCTCAGACCAATGTCTCAGCTGTAGGAGACCCAGGAATGCAAAGAGATGGTCTAAGAGTAGCCTTCGAAGCTTGGAATTTTTGCAATGAAGTTGGTCAAGAAGCTCCTCACATGGGTAGCCCAAGAGCAGCTGAATGTTTTGATCTTTCACAAGGTTCTCTGATTCACAAGGTAACAGAAAAAGTTAACAAACTTGGTGTAGGAGAGTCATTACCTGGTCTGAGACCAGAAGACATAAACAATATAGATCTTTATGCTGTTCAAAAGGAACTGTATTTAGGTTCTTTATGTGAAGTTAAAGACACACCAAGGCCATGGCAATTTTGGATGATAATGCTAAAAAATGGAAATTATGACACTAGGTCTGGTTTATGTCCTCAAGATGGTAAAAGGGTACCTCCTTTTAAACCAGGAAGGTTTCCTTGTTTTGGAACAGGATGCATGAACCAACCCATCTTCTGTCATCAATGGACAAAGCTGGAAGGTGATGTAATGAGAGGAGGATTTAATGGTACTTATGATTTGGATTCTAGTTGTAGAGATAGTGGACTTGATGATAATAACAATCTTTCATTTTATGAGGTGGTTTGGGAGAAGAAAGTTAATGTTGGGAGTTGGTTGTTCAAGCATAAGTTAAAGACTTCAAAGAAATATCCTTGGTTGATGCTTTACTTGAGAGCTGATACAGTTAGTGGATTCTCTGGTGGTTACCATTATGACACAAGGGGAATGCTTAAAGCTCCTCTTGAGTCACCAAATTTTAAGGTGAGGTTAACCTTAGATGTCAAGAAAGGAGGAGGATCCAAGAGTCAATTCTACCTTCTAGACATGGGAAGTTGTTGGAAGAACAATGGTGCACCTTGTGATGGAGATGTACTAACTGATGTCACTAGATACAGTGAAATGATCATCAATCCAGAAACTCCAGCTTGGTGTAGCCCTACAGGTTTAGGAAATTGTCCACCATTTCATATCACACCAGATGACAAAAAAATATTCAGAAATGACACTGCCAATTTCCCTTATTCAGCATATCACTATTACTGTGCTCCAGGCAATGCTCAACATTTAGAGCAACCTGTTAGTACTTGTGATCCTTATAGTAATCCTCAAGCACAAGAGATAGTTCAGTTATTGCCTCATCCTATTTGGGGTGAGTATGGTTATCCCATTAAAAAAGGTGATGGTTGGGTTGGTGATGCAAGGACTTGGGAACTTGATGTTGGTGGCCTAGCAAGTAGACTTCTATCAGGTCAATAA

Protein sequence

>MsG0180004754.01.T01

MEKQLKKLFVLTNVLLLCASLVSTTHSQTNVSAVGDPGMQRDGLRVAFEAWNFCNEVGQEAPHMGSPRAAECFDLSQGSLIHKVTEKVNKLGVGESLPGLRPEDINNIDLYAVQKELYLGSLCEVKDTPRPWQFWMIMLKNGNYDTRSGLCPQDGKRVPPFKPGRFPCFGTGCMNQPIFCHQWTKLEGDVMRGGFNGTYDLDSSCRDSGLDDNNNLSFYEVVWEKKVNVGSWLFKHKLKTSKKYPWLMLYLRADTVSGFSGGYHYDTRGMLKAPLESPNFKVRLTLDVKKGGGSKSQFYLLDMGSCWKNNGAPCDGDVLTDVTRYSEMIINPETPAWCSPTGLGNCPPFHITPDDKKIFRNDTANFPYSAYHYYCAPGNAQHLEQPVSTCDPYSNPQAQEIVQLLPHPIWGEYGYPIKKGDGWVGDARTWELDVGGLASRLLSGQ*