Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040827.01.T01 | XP_024626166.1 | 77.841 | 176 | 10 | 1 | 1 | 147 | 1 | 176 | 1.78E-85 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040827.01.T01 | X1WHY6 | 45.37 | 108 | 59 | 0 | 37 | 144 | 52 | 159 | 2.91E-25 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040827.01.T01 | G7KYK1 | 77.841 | 176 | 10 | 1 | 1 | 147 | 1 | 176 | 8.49e-86 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000172.01 | MsG0780040827.01 | 0.813802 | 2.128603e-51 | 1.403864e-48 |
| MsG0180000458.01 | MsG0780040827.01 | 0.830485 | 2.860568e-55 | 3.017760e-52 |
| MsG0180003411.01 | MsG0780040827.01 | 0.839912 | 1.193087e-57 | 1.671958e-54 |
| MsG0180005873.01 | MsG0780040827.01 | 0.916386 | 1.896267e-85 | 5.201687e-81 |
| MsG0780040323.01 | MsG0780040827.01 | 0.808765 | 2.636616e-50 | 1.520433e-47 |
| MsG0780040481.01 | MsG0780040827.01 | 0.816020 | 6.858328e-52 | 4.804560e-49 |
| MsG0780040827.01 | MsG0780041334.01 | 0.803835 | 2.884374e-49 | 1.464335e-46 |
| MsG0780040827.01 | MsG0780041650.01 | 0.829550 | 4.834482e-55 | 4.963863e-52 |
| MsG0780040827.01 | MsG0780041664.01 | 0.809948 | 1.470100e-50 | 8.748599e-48 |
| MsG0780040827.01 | MsG0880046832.01 | 0.840408 | 8.854159e-58 | 1.260088e-54 |
| MsG0780040827.01 | MsG0880046863.01 | 0.865797 | 4.548977e-65 | 1.498975e-61 |
| MsG0780040827.01 | MsG0880047233.01 | 0.831626 | 1.500679e-55 | 1.637617e-52 |
| MsG0280011055.01 | MsG0780040827.01 | 0.808435 | 3.101490e-50 | 1.773283e-47 |
| MsG0280011188.01 | MsG0780040827.01 | 0.843363 | 1.467664e-58 | 2.290985e-55 |
| MsG0480022812.01 | MsG0780040827.01 | 0.820961 | 5.201864e-53 | 4.176596e-50 |
| MsG0480023188.01 | MsG0780040827.01 | 0.807594 | 4.683578e-50 | 2.619099e-47 |
| MsG0580025815.01 | MsG0780040827.01 | 0.844521 | 7.179819e-59 | 1.162185e-55 |
| MsG0380014937.01 | MsG0780040827.01 | 0.801523 | 8.648172e-49 | 4.138972e-46 |
| MsG0380016993.01 | MsG0780040827.01 | 0.808701 | 2.721294e-50 | 1.566640e-47 |
| MsG0380017419.01 | MsG0780040827.01 | 0.883462 | 4.394918e-71 | 2.789013e-67 |
| MsG0380017868.01 | MsG0780040827.01 | 0.813283 | 2.768370e-51 | 1.800199e-48 |
| MsG0480018125.01 | MsG0780040827.01 | 0.863948 | 1.728092e-64 | 5.333063e-61 |
| MsG0580029214.01 | MsG0780040827.01 | 0.800423 | 1.451604e-48 | 6.756682e-46 |
| MsG0580030086.01 | MsG0780040827.01 | 0.808471 | 3.047853e-50 | 1.744233e-47 |
| MsG0680035681.01 | MsG0780040827.01 | 0.810938 | 8.986979e-51 | 5.490498e-48 |
| MsG0780037101.01 | MsG0780040827.01 | 0.803855 | 2.856706e-49 | 1.451055e-46 |
| MsG0780038743.01 | MsG0780040827.01 | 0.813330 | 2.703891e-51 | 1.760541e-48 |
| MsG0780039530.01 | MsG0780040827.01 | 0.816138 | 6.453209e-52 | 4.535338e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040827.01.T01 | MTR_7g099210 | 77.841 | 176 | 10 | 1 | 1 | 147 | 1 | 176 | 2.15e-89 | 276 |
| MsG0780040827.01.T01 | MTR_1g069355 | 82.308 | 130 | 23 | 0 | 18 | 147 | 79 | 208 | 1.04e-71 | 228 |
| MsG0780040827.01.T01 | MTR_1g069355 | 82.308 | 130 | 23 | 0 | 18 | 147 | 79 | 208 | 1.27e-71 | 229 |
| MsG0780040827.01.T01 | MTR_4g119620 | 33.000 | 100 | 61 | 3 | 44 | 140 | 85 | 181 | 2.48e-12 | 63.2 |
| MsG0780040827.01.T01 | MTR_3g106080 | 40.789 | 76 | 44 | 1 | 41 | 116 | 549 | 623 | 3.06e-12 | 63.2 |
| MsG0780040827.01.T01 | MTR_1g072140 | 34.000 | 100 | 60 | 3 | 44 | 140 | 76 | 172 | 5.97e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040827.01.T01 | AT1G04140 | 73.571 | 140 | 37 | 0 | 8 | 147 | 74 | 213 | 5.18e-67 | 217 |
| MsG0780040827.01.T01 | AT1G04140 | 73.571 | 140 | 37 | 0 | 8 | 147 | 74 | 213 | 6.88e-67 | 216 |
| MsG0780040827.01.T01 | AT5G43930 | 78.740 | 127 | 27 | 0 | 18 | 144 | 87 | 213 | 1.58e-64 | 209 |
| MsG0780040827.01.T01 | AT5G43930 | 78.740 | 127 | 27 | 0 | 18 | 144 | 87 | 213 | 1.58e-64 | 209 |
| MsG0780040827.01.T01 | AT5G43930 | 78.740 | 127 | 27 | 0 | 18 | 144 | 87 | 213 | 1.58e-64 | 209 |
| MsG0780040827.01.T01 | AT5G43930 | 66.225 | 151 | 27 | 1 | 18 | 144 | 87 | 237 | 2.91e-59 | 195 |
| MsG0780040827.01.T01 | AT3G49660 | 35.714 | 98 | 61 | 2 | 44 | 140 | 78 | 174 | 3.36e-15 | 71.2 |
Find 48 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCAAGAAGTTCGATTA+TGG | 0.243621 | 7:-83009360 | MsG0780040827.01.T01:CDS |
| CGTTGCTTAAAGTGTTTAAT+TGG | 0.247471 | 7:-83009610 | MsG0780040827.01.T01:CDS |
| AATTAAAGAATATTCTAATA+TGG | 0.306006 | 7:-83010667 | MsG0780040827.01.T01:five_prime_UTR |
| CGTGTTCGTGTTCGTGTTCA+AGG | 0.309647 | 7:+83010592 | None:intergenic |
| AAGATAATCGACTGTGAAAC+TGG | 0.350714 | 7:-83009634 | MsG0780040827.01.T01:CDS |
| AACGGCAATGATTTCCCCTT+TGG | 0.368185 | 7:+83009138 | None:intergenic |
| GGATCAAGAAGTTCGATTAT+GGG | 0.386752 | 7:-83009359 | MsG0780040827.01.T01:CDS |
| GAAATCATTGCCGTTGCATC+AGG | 0.388142 | 7:-83009130 | MsG0780040827.01.T01:CDS |
| CCACCCAAGGCGTCCTCATA+TGG | 0.404101 | 7:+83009587 | None:intergenic |
| TTACCTGCCGTTATAATTAC+CGG | 0.420052 | 7:+83010369 | None:intergenic |
| CTCCCACTAGCAAGTATTTG+TGG | 0.430838 | 7:+83009385 | None:intergenic |
| CCCTTTGGCATGAAAAGCAA+TGG | 0.446896 | 7:+83009153 | None:intergenic |
| AATACTTGCTAGTGGGAGCT+TGG | 0.475100 | 7:-83009380 | MsG0780040827.01.T01:CDS |
| TGAAAAGCAATGGATGCAAT+TGG | 0.476696 | 7:+83009163 | None:intergenic |
| GAAAATGATCCTTAGGGTTG+AGG | 0.480101 | 7:-83009866 | MsG0780040827.01.T01:intron |
| TACCTTGTGGCCTGATGCAA+CGG | 0.492040 | 7:+83009120 | None:intergenic |
| ACCTTCACCGTCGTCTCGCT+AGG | 0.494262 | 7:-83010623 | MsG0780040827.01.T01:five_prime_UTR |
| GAATCAGAGAGAGTAATAGT+AGG | 0.497721 | 7:+83010496 | None:intergenic |
| AGTGTTTAATTGGCCATATG+AGG | 0.500364 | 7:-83009600 | MsG0780040827.01.T01:CDS |
| TGGCCATATGAGGACGCCTT+GGG | 0.511608 | 7:-83009590 | MsG0780040827.01.T01:CDS |
| GATTTCAAGCTTACCACCCA+AGG | 0.513791 | 7:+83009574 | None:intergenic |
| TTGGCCATATGAGGACGCCT+TGG | 0.541707 | 7:-83009591 | MsG0780040827.01.T01:CDS |
| CACGAACACGAACACGAACA+CGG | 0.542530 | 7:-83010585 | MsG0780040827.01.T01:five_prime_UTR |
| ACCTAGCGAGACGACGGTGA+AGG | 0.558637 | 7:+83010622 | None:intergenic |
| GCAGCGGCGTTTAGTCCAGA+TGG | 0.579480 | 7:-83009778 | MsG0780040827.01.T01:CDS |
| GTTCTTTAGTACCTGCGCCA+AGG | 0.582270 | 7:-83009810 | MsG0780040827.01.T01:CDS |
| AGAAAGTAAATATACAGAAG+TGG | 0.582698 | 7:+83009305 | None:intergenic |
| AGGTACTAAAGAACAATACT+TGG | 0.589341 | 7:+83009819 | None:intergenic |
| CATCGGAATCGTGATCGCAC+CGG | 0.590292 | 7:-83010388 | MsG0780040827.01.T01:CDS |
| TGCCGTTGCATCAGGCCACA+AGG | 0.593080 | 7:-83009122 | MsG0780040827.01.T01:CDS |
| GCAAGTATTTGTGGATGCAA+TGG | 0.594535 | 7:+83009394 | None:intergenic |
| GATCGCACCGGTAATTATAA+CGG | 0.595029 | 7:-83010376 | MsG0780040827.01.T01:CDS |
| CACATATGACGAGAATTCAT+CGG | 0.599243 | 7:-83010405 | MsG0780040827.01.T01:exon |
| GCCGCTGCAATAGTAGACCT+TGG | 0.604711 | 7:+83009793 | None:intergenic |
| GCACCGGTAATTATAACGGC+AGG | 0.608085 | 7:-83010372 | MsG0780040827.01.T01:intron |
| GTATTTGTGGATGCAATGGA+TGG | 0.608429 | 7:+83009398 | None:intergenic |
| CCATATGAGGACGCCTTGGG+TGG | 0.612145 | 7:-83009587 | MsG0780040827.01.T01:intron |
| ACACGAACACGAACACGGAG+AGG | 0.616284 | 7:-83010580 | MsG0780040827.01.T01:five_prime_UTR |
| CATCCACAAATACTTGCTAG+TGG | 0.619566 | 7:-83009388 | MsG0780040827.01.T01:CDS |
| ATCCACAAATACTTGCTAGT+GGG | 0.630308 | 7:-83009387 | MsG0780040827.01.T01:CDS |
| AACGAGAAGAAACAGAAGAG+AGG | 0.651443 | 7:+83010470 | None:intergenic |
| GCAATAGTAGACCTTGGCGC+AGG | 0.654426 | 7:+83009799 | None:intergenic |
| ATTATGGGATGCTAACACAT+CGG | 0.657460 | 7:-83009344 | MsG0780040827.01.T01:CDS |
| GCCAAGGTCTACTATTGCAG+CGG | 0.665562 | 7:-83009794 | MsG0780040827.01.T01:CDS |
| GTATAATTAACACAAGTCGT+AGG | 0.672001 | 7:+83010644 | None:intergenic |
| GCAGAGACCTAGCGAGACGA+CGG | 0.673343 | 7:+83010616 | None:intergenic |
| AGTCGATTATCTTTACTGTG+TGG | 0.679994 | 7:+83009644 | None:intergenic |
| GGGTTGAGGCTGATTCACTG+CGG | 0.741601 | 7:-83009852 | MsG0780040827.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAGAATATTCTAATA+TGG | - | Chr7:83009105-83009124 | MsG0780040827.01.T01:CDS | 10.0% |
| !!! | GTATTTTTATAATTGAATTA+TGG | - | Chr7:83009506-83009525 | MsG0780040827.01.T01:intron | 10.0% |
| !! | AACAAAAAAATTAGTAATAG+TGG | + | Chr7:83010526-83010545 | None:intergenic | 15.0% |
| !! | TTCAATTTAAACTAATAATG+AGG | + | Chr7:83010063-83010082 | None:intergenic | 15.0% |
| !! | TTTAGCACATAAATTAAAAT+TGG | + | Chr7:83010337-83010356 | None:intergenic | 15.0% |
| !! | AATAGATGCATAATAAATTC+AGG | + | Chr7:83010234-83010253 | None:intergenic | 20.0% |
| !! | ACAAAAAAAACTAATCACAA+AGG | + | Chr7:83010089-83010108 | None:intergenic | 20.0% |
| !! | CAAAAAAAACTAATCACAAA+GGG | + | Chr7:83010088-83010107 | None:intergenic | 20.0% |
| !! | TTTCTGTTTGATGAATTTAT+TGG | - | Chr7:83010567-83010586 | MsG0780040827.01.T01:five_prime_UTR | 20.0% |
| ! | AAAATTAGTAATAGTGGCAA+AGG | + | Chr7:83010520-83010539 | None:intergenic | 25.0% |
| ! | AGAAAGTAAATATACAGAAG+TGG | + | Chr7:83010470-83010489 | None:intergenic | 25.0% |
| ! | ATTCAACAAATTCAACACAA+CGG | + | Chr7:83009728-83009747 | None:intergenic | 25.0% |
| ! | GAGAAATGATTAATCAGAAA+CGG | + | Chr7:83009436-83009455 | None:intergenic | 25.0% |
| ! | TACAATCCATATAAAAACTG+AGG | + | Chr7:83009675-83009694 | None:intergenic | 25.0% |
| ! | TGTTTAAATACCATGACAAT+AGG | + | Chr7:83009831-83009850 | None:intergenic | 25.0% |
| !! | ATCTTTGAAAATGATCCTTA+GGG | - | Chr7:83009900-83009919 | MsG0780040827.01.T01:intron | 25.0% |
| !!! | GTTGTTTTTCTTGTATTGAT+TGG | - | Chr7:83010543-83010562 | MsG0780040827.01.T01:five_prime_UTR | 25.0% |
| !!! | TTTTTGTTTGTTATGTGTAG+TGG | - | Chr7:83010102-83010121 | MsG0780040827.01.T01:intron | 25.0% |
| AATCATTTCTCTGTTTCCAT+CGG | - | Chr7:83009445-83009464 | MsG0780040827.01.T01:intron | 30.0% | |
| AGAAAAAAACTACTACCTTG+TGG | + | Chr7:83010668-83010687 | None:intergenic | 30.0% | |
| AGGTACTAAAGAACAATACT+TGG | + | Chr7:83009956-83009975 | None:intergenic | 30.0% | |
| ATTCCTTCTGTAAACAACAA+AGG | + | Chr7:83010297-83010316 | None:intergenic | 30.0% | |
| GTATAATTAACACAAGTCGT+AGG | + | Chr7:83009131-83009150 | None:intergenic | 30.0% | |
| TCAGTCTATAAACGATATCT+AGG | - | Chr7:83009854-83009873 | MsG0780040827.01.T01:CDS | 30.0% | |
| TGCATTTAGATCGAATCATT+TGG | - | Chr7:83009475-83009494 | MsG0780040827.01.T01:intron | 30.0% | |
| TTTATGTGCTAAATGACTAC+AGG | - | Chr7:83010344-83010363 | MsG0780040827.01.T01:intron | 30.0% | |
| TTTCAAAGATGTTAGTCAAG+AGG | + | Chr7:83009890-83009909 | None:intergenic | 30.0% | |
| ! | AGTTTGCCTCAGTTTTTATA+TGG | - | Chr7:83009666-83009685 | MsG0780040827.01.T01:intron | 30.0% |
| ! | CATCTTTGAAAATGATCCTT+AGG | - | Chr7:83009899-83009918 | MsG0780040827.01.T01:intron | 30.0% |
| ! | CGTTGCTTAAAGTGTTTAAT+TGG | - | Chr7:83010162-83010181 | MsG0780040827.01.T01:intron | 30.0% |
| !! | ATGTCTTTAATTTGCTTGCA+CGG | - | Chr7:83009755-83009774 | MsG0780040827.01.T01:intron | 30.0% |
| AAGATAATCGACTGTGAAAC+TGG | - | Chr7:83010138-83010157 | MsG0780040827.01.T01:intron | 35.0% | |
| AGTCGATTATCTTTACTGTG+TGG | + | Chr7:83010131-83010150 | None:intergenic | 35.0% | |
| AGTGTTTAATTGGCCATATG+AGG | - | Chr7:83010172-83010191 | MsG0780040827.01.T01:intron | 35.0% | |
| ATTATGGGATGCTAACACAT+CGG | - | Chr7:83010428-83010447 | MsG0780040827.01.T01:five_prime_UTR | 35.0% | |
| CACATATGACGAGAATTCAT+CGG | - | Chr7:83009367-83009386 | MsG0780040827.01.T01:CDS | 35.0% | |
| CATAATAAATTCAGGCAGAC+AGG | + | Chr7:83010226-83010245 | None:intergenic | 35.0% | |
| CTAATTTGAGCTGATCCTAA+TGG | + | Chr7:83009594-83009613 | None:intergenic | 35.0% | |
| GAATCAGAGAGAGTAATAGT+AGG | + | Chr7:83009279-83009298 | None:intergenic | 35.0% | |
| GGATCAAGAAGTTCGATTAT+GGG | - | Chr7:83010413-83010432 | MsG0780040827.01.T01:exon | 35.0% | |
| TGAAAAGCAATGGATGCAAT+TGG | + | Chr7:83010612-83010631 | None:intergenic | 35.0% | |
| TGGATCAAGAAGTTCGATTA+TGG | - | Chr7:83010412-83010431 | MsG0780040827.01.T01:exon | 35.0% | |
| TTACCTGCCGTTATAATTAC+CGG | + | Chr7:83009406-83009425 | None:intergenic | 35.0% | |
| ! | ATCCACAAATACTTGCTAGT+GGG | - | Chr7:83010385-83010404 | MsG0780040827.01.T01:CDS | 35.0% |
| !! | CTTGCTACATGTTTTGTTCT+CGG | + | Chr7:83009793-83009812 | None:intergenic | 35.0% |
| !! | TTGCCTTTGTTGTTTACAGA+AGG | - | Chr7:83010291-83010310 | MsG0780040827.01.T01:intron | 35.0% |
| AACGAGAAGAAACAGAAGAG+AGG | + | Chr7:83009305-83009324 | None:intergenic | 40.0% | |
| ACTAATTGCAACTTACTGCG+TGG | + | Chr7:83010034-83010053 | None:intergenic | 40.0% | |
| CTAAATGCAACTGAAACCGA+TGG | + | Chr7:83009464-83009483 | None:intergenic | 40.0% | |
| GAAAATGATCCTTAGGGTTG+AGG | - | Chr7:83009906-83009925 | MsG0780040827.01.T01:intron | 40.0% | |
| GCAAGTATTTGTGGATGCAA+TGG | + | Chr7:83010381-83010400 | None:intergenic | 40.0% | |
| GTATTTGTGGATGCAATGGA+TGG | + | Chr7:83010377-83010396 | None:intergenic | 40.0% | |
| GTGCTAAATGACTACAGGTT+AGG | - | Chr7:83010349-83010368 | MsG0780040827.01.T01:intron | 40.0% | |
| GTGCTCGTTTATTGACCATT+AGG | - | Chr7:83009576-83009595 | MsG0780040827.01.T01:intron | 40.0% | |
| ! | CATCCACAAATACTTGCTAG+TGG | - | Chr7:83010384-83010403 | MsG0780040827.01.T01:CDS | 40.0% |
| ! | GATCGCACCGGTAATTATAA+CGG | - | Chr7:83009396-83009415 | MsG0780040827.01.T01:CDS | 40.0% |
| ! | GATGCAAGAACTTTTCCATC+TGG | + | Chr7:83010012-83010031 | None:intergenic | 40.0% |
| ! | TCTTTTTCTCTCTCTGTCTC+TGG | + | Chr7:83009239-83009258 | None:intergenic | 40.0% |
| !! | CATTGCTTTTCATGCCAAAG+GGG | - | Chr7:83010620-83010639 | MsG0780040827.01.T01:five_prime_UTR | 40.0% |
| !! | CCATTGCTTTTCATGCCAAA+GGG | - | Chr7:83010619-83010638 | MsG0780040827.01.T01:five_prime_UTR | 40.0% |
| !! | TCCATTGCTTTTCATGCCAA+AGG | - | Chr7:83010618-83010637 | MsG0780040827.01.T01:five_prime_UTR | 40.0% |
| AACGGCAATGATTTCCCCTT+TGG | + | Chr7:83010637-83010656 | None:intergenic | 45.0% | |
| CCCTTTGGCATGAAAAGCAA+TGG | + | Chr7:83010622-83010641 | None:intergenic | 45.0% | |
| CTCCCACTAGCAAGTATTTG+TGG | + | Chr7:83010390-83010409 | None:intergenic | 45.0% | |
| GAAATCATTGCCGTTGCATC+AGG | - | Chr7:83010642-83010661 | MsG0780040827.01.T01:five_prime_UTR | 45.0% | |
| GATTTCAAGCTTACCACCCA+AGG | + | Chr7:83010201-83010220 | None:intergenic | 45.0% | |
| ! | AATACTTGCTAGTGGGAGCT+TGG | - | Chr7:83010392-83010411 | MsG0780040827.01.T01:CDS | 45.0% |
| ! | TTTTCTCTCTCTGTCTCTGG+TGG | + | Chr7:83009236-83009255 | None:intergenic | 45.0% |
| CAAAGCGTGGCCTATTGTCA+TGG | - | Chr7:83009818-83009837 | MsG0780040827.01.T01:CDS | 50.0% | |
| CACGAACACGAACACGAACA+CGG | - | Chr7:83009187-83009206 | MsG0780040827.01.T01:intron | 50.0% | |
| CGTGTTCGTGTTCGTGTTCA+AGG | + | Chr7:83009183-83009202 | None:intergenic | 50.0% | |
| GCCAAGGTCTACTATTGCAG+CGG | - | Chr7:83009978-83009997 | MsG0780040827.01.T01:intron | 50.0% | |
| GTAGCAAGAGATGCAAAGCG+TGG | - | Chr7:83009805-83009824 | MsG0780040827.01.T01:CDS | 50.0% | |
| GTGAATCAGCCTCAACCCTA+AGG | + | Chr7:83009918-83009937 | None:intergenic | 50.0% | |
| GTTCTTTAGTACCTGCGCCA+AGG | - | Chr7:83009962-83009981 | MsG0780040827.01.T01:intron | 50.0% | |
| TACCTTGTGGCCTGATGCAA+CGG | + | Chr7:83010655-83010674 | None:intergenic | 50.0% | |
| ! | GCACCGGTAATTATAACGGC+AGG | - | Chr7:83009400-83009419 | MsG0780040827.01.T01:CDS | 50.0% |
| ACACGAACACGAACACGGAG+AGG | - | Chr7:83009192-83009211 | MsG0780040827.01.T01:intron | 55.0% | |
| CATCGGAATCGTGATCGCAC+CGG | - | Chr7:83009384-83009403 | MsG0780040827.01.T01:CDS | 55.0% | |
| GCAATAGTAGACCTTGGCGC+AGG | + | Chr7:83009976-83009995 | None:intergenic | 55.0% | |
| GCCGCTGCAATAGTAGACCT+TGG | + | Chr7:83009982-83010001 | None:intergenic | 55.0% | |
| TGGCCATATGAGGACGCCTT+GGG | - | Chr7:83010182-83010201 | MsG0780040827.01.T01:intron | 55.0% | |
| TTGGCCATATGAGGACGCCT+TGG | - | Chr7:83010181-83010200 | MsG0780040827.01.T01:intron | 55.0% | |
| ! | GGGTTGAGGCTGATTCACTG+CGG | - | Chr7:83009920-83009939 | MsG0780040827.01.T01:intron | 55.0% |
| ACCTAGCGAGACGACGGTGA+AGG | + | Chr7:83009153-83009172 | None:intergenic | 60.0% | |
| ACCTTCACCGTCGTCTCGCT+AGG | - | Chr7:83009149-83009168 | MsG0780040827.01.T01:CDS | 60.0% | |
| CCATATGAGGACGCCTTGGG+TGG | - | Chr7:83010185-83010204 | MsG0780040827.01.T01:intron | 60.0% | |
| GCAGAGACCTAGCGAGACGA+CGG | + | Chr7:83009159-83009178 | None:intergenic | 60.0% | |
| GCAGCGGCGTTTAGTCCAGA+TGG | - | Chr7:83009994-83010013 | MsG0780040827.01.T01:intron | 60.0% | |
| TGCCGTTGCATCAGGCCACA+AGG | - | Chr7:83010650-83010669 | MsG0780040827.01.T01:five_prime_UTR | 60.0% | |
| ! | CCACCCAAGGCGTCCTCATA+TGG | + | Chr7:83010188-83010207 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 83009105 | 83010689 | 83009105 | ID=MsG0780040827.01;Name=MsG0780040827.01 |
| Chr7 | mRNA | 83009105 | 83010689 | 83009105 | ID=MsG0780040827.01.T01;Parent=MsG0780040827.01;Name=MsG0780040827.01.T01;_AED=0.45;_eAED=0.45;_QI=267|0.75|0.8|1|1|1|5|0|148 |
| Chr7 | exon | 83009105 | 83009190 | 83009105 | ID=MsG0780040827.01.T01:exon:38573;Parent=MsG0780040827.01.T01 |
| Chr7 | exon | 83009320 | 83009428 | 83009320 | ID=MsG0780040827.01.T01:exon:38572;Parent=MsG0780040827.01.T01 |
| Chr7 | exon | 83009588 | 83009672 | 83009588 | ID=MsG0780040827.01.T01:exon:38571;Parent=MsG0780040827.01.T01 |
| Chr7 | exon | 83009757 | 83009873 | 83009757 | ID=MsG0780040827.01.T01:exon:38570;Parent=MsG0780040827.01.T01 |
| Chr7 | exon | 83010373 | 83010689 | 83010373 | ID=MsG0780040827.01.T01:exon:38569;Parent=MsG0780040827.01.T01 |
| Chr7 | five_prime_UTR | 83010423 | 83010689 | 83010423 | ID=MsG0780040827.01.T01:five_prime_utr;Parent=MsG0780040827.01.T01 |
| Chr7 | CDS | 83010373 | 83010422 | 83010373 | ID=MsG0780040827.01.T01:cds;Parent=MsG0780040827.01.T01 |
| Chr7 | CDS | 83009757 | 83009873 | 83009757 | ID=MsG0780040827.01.T01:cds;Parent=MsG0780040827.01.T01 |
| Chr7 | CDS | 83009588 | 83009672 | 83009588 | ID=MsG0780040827.01.T01:cds;Parent=MsG0780040827.01.T01 |
| Chr7 | CDS | 83009320 | 83009428 | 83009320 | ID=MsG0780040827.01.T01:cds;Parent=MsG0780040827.01.T01 |
| Chr7 | CDS | 83009105 | 83009190 | 83009105 | ID=MsG0780040827.01.T01:cds;Parent=MsG0780040827.01.T01 |
| Gene Sequence |
| Protein sequence |
