AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016993.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016993.01.T01 MTR_3g498775 83.333 624 7 5 1 624 1 527 0.0 995
MsG0380016993.01.T01 MTR_3g498775 77.363 455 7 4 170 624 1 359 0.0 658
MsG0380016993.01.T01 MTR_7g114220 38.540 493 171 15 139 624 230 597 3.14e-83 275
MsG0380016993.01.T01 MTR_7g114220 37.561 205 91 7 1 181 1 192 2.99e-14 76.6
MsG0380016993.01.T01 MTR_1g117130 51.190 84 41 0 291 374 34 117 2.32e-22 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016993.01.T01 AT3G48860 53.135 638 182 15 1 624 1 535 0.0 555
MsG0380016993.01.T01 AT3G48860 58.269 520 168 12 1 502 1 489 0.0 530
MsG0380016993.01.T01 AT5G23700 51.515 627 207 13 1 624 1 533 1.45e-176 514
MsG0380016993.01.T01 AT5G23700 51.037 627 205 12 1 624 1 528 4.62e-176 513
MsG0380016993.01.T01 AT5G23700 51.037 627 182 12 1 624 1 505 4.98e-173 504
MsG0380016993.01.T01 AT5G13260 49.291 635 188 13 1 624 1 512 8.52e-157 462
MsG0380016993.01.T01 AT3G48860 52.490 482 125 9 146 624 1 381 1.18e-153 450
MsG0380016993.01.T01 AT4G25070 47.404 443 132 6 184 624 380 723 4.02e-111 351
MsG0380016993.01.T01 AT4G25070 47.392 441 131 6 186 624 384 725 1.44e-110 350
MsG0380016993.01.T01 AT4G08630 40.323 496 180 11 135 624 376 761 1.07e-98 320
MsG0380016993.01.T01 AT4G08630 40.040 497 181 12 135 624 376 762 3.05e-97 316

Find 167 sgRNAs with CRISPR-Local

Find 499 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTTATTATCTTATTTC+TGG 0.126119 3:+90416683 MsG0380016993.01.T01:CDS
ACAGACTGCCGAATCAAATT+TGG 0.169916 3:-90414689 None:intergenic
CAGAAGACAGGCTTCGGTTT+TGG 0.207993 3:+90416604 MsG0380016993.01.T01:CDS
ACCCGGTGATGCTAAATATT+TGG 0.209870 3:+90415296 MsG0380016993.01.T01:CDS
TGCTCAGCAGTTTGGCTTCC+AGG 0.226560 3:-90413063 None:intergenic
AATATTTGTAGCTTATAAAT+TGG 0.231087 3:-90416518 None:intergenic
AGCACTAGAATTTCTGTTAC+TGG 0.266285 3:-90410527 None:intergenic
AGCTGGAAGACCGGCGGTTT+CGG 0.278869 3:+90410912 MsG0380016993.01.T01:CDS
AAATACTGACCATTTCTTCT+TGG 0.280043 3:-90413828 None:intergenic
GCGCTGATCTCCCGTGTCTT+TGG 0.282933 3:-90412219 None:intergenic
TGGATCTGGTCTCCACTTCT+TGG 0.283260 3:-90412559 None:intergenic
TTCTCTTTATTCCTGATTGT+TGG 0.283750 3:-90411024 None:intergenic
AGGCGTGGTTAACTTATTTC+TGG 0.295556 3:+90416544 MsG0380016993.01.T01:CDS
TTTAGCATCACCGGGTGATT+TGG 0.299242 3:-90415289 None:intergenic
GCTAAATATTTGGAAGCATT+TGG 0.317804 3:+90415306 MsG0380016993.01.T01:CDS
TTTAATTTGGTGTGCTTTAG+TGG 0.326904 3:+90415425 MsG0380016993.01.T01:CDS
GATGTTGGCTTGCTCGCTAC+TGG 0.328613 3:+90413943 MsG0380016993.01.T01:CDS
TGGAGGAGAGCTTTATTTCA+TGG 0.330011 3:+90416564 MsG0380016993.01.T01:CDS
TTCGGTCTCGCAACGGAAAT+CGG 0.339993 3:-90410568 None:intergenic
TATAAGCTACAAATATTTGC+AGG 0.347538 3:+90416524 MsG0380016993.01.T01:CDS
AATACTGACCATTTCTTCTT+GGG 0.353157 3:-90413827 None:intergenic
GAGGGAACTTGCTTCTTTGA+AGG 0.358652 3:+90414477 MsG0380016993.01.T01:CDS
TTTGAACTTGTCATCTCTGC+TGG 0.359361 3:+90414236 MsG0380016993.01.T01:CDS
CTCTTTGAAAAGAACGTCTT+CGG 0.366142 3:-90416176 None:intergenic
TCAAATTTGGGCGTCTGTGT+TGG 0.372854 3:-90414676 None:intergenic
GTCATCCAAAACATGATTAT+AGG 0.375252 3:-90416496 None:intergenic
ACGCTCCTATAATCATGTTT+TGG 0.376794 3:+90416491 MsG0380016993.01.T01:CDS
ACGCTGTGCGGCGGCTTTAG+CGG 0.383928 3:-90410401 None:intergenic
AAGAGCCTTTGCTACGGCTT+CGG 0.386256 3:-90413776 None:intergenic
CTCCACTGCCGCGTGTAGAC+TGG 0.387171 3:-90410262 None:intergenic
CATTTATATCACGAACAGTT+TGG 0.393557 3:-90414402 None:intergenic
AGCCCTTCGTGTCGAAATTC+AGG 0.395308 3:+90413600 MsG0380016993.01.T01:CDS
TTTCTCGAGTTCCCTGGATC+TGG 0.398557 3:-90412573 None:intergenic
CAAATTTGGGCGTCTGTGTT+GGG 0.402012 3:-90414675 None:intergenic
GAGCAAGCCAACATCTCTTC+AGG 0.403716 3:-90413935 None:intergenic
ATCCAGGGAACTCGAGAAAC+AGG 0.404007 3:+90412577 MsG0380016993.01.T01:CDS
GAACGATGCTTTATTAGAAA+AGG 0.407263 3:+90412434 MsG0380016993.01.T01:CDS
CAGGTTGCTTCTCTTGGAGA+AGG 0.422749 3:+90413034 MsG0380016993.01.T01:intron
CAGACTGCCGAATCAAATTT+GGG 0.423991 3:-90414688 None:intergenic
GATTTCGGAGGCGGCACCAC+TGG 0.425160 3:-90410961 None:intergenic
CGTGATATAAATGATCTTGC+CGG 0.426184 3:+90414412 MsG0380016993.01.T01:CDS
TCTTTATTCCTGATTGTTGG+AGG 0.427115 3:-90411021 None:intergenic
AGGTTACCTGCTCAGCAGTT+TGG 0.427607 3:-90413071 None:intergenic
TTTGTCACAGGCTGCTCTCA+TGG 0.429817 3:+90413537 MsG0380016993.01.T01:CDS
AGAGAGGTATGCACTAAGAA+TGG 0.431050 3:+90413202 MsG0380016993.01.T01:CDS
CGATTGATCCTCCAACAATC+AGG 0.443369 3:+90411013 MsG0380016993.01.T01:CDS
GGCGTTCGTATGGTGGATTT+CGG 0.447120 3:-90410976 None:intergenic
TTCAGTTGAGATGGGTTTGA+GGG 0.447980 3:+90414459 MsG0380016993.01.T01:CDS
AAAAGGCTAAGGAGGAATCT+TGG 0.452681 3:+90414261 MsG0380016993.01.T01:CDS
TTCCAAATATTTAGCATCAC+CGG 0.453193 3:-90415298 None:intergenic
ATGTTGGCTTGCTCGCTACT+GGG 0.454653 3:+90413944 MsG0380016993.01.T01:CDS
TTCCACCAGACATCACTATC+AGG 0.455204 3:+90412186 MsG0380016993.01.T01:CDS
CTGATTGTTGGAGGATCAAT+CGG 0.458023 3:-90411012 None:intergenic
GAAGAAAGAGCAGAAGGAGG+CGG 0.460811 3:-90410499 None:intergenic
CACATAAATCCTCACAATCA+TGG 0.464365 3:+90410219 MsG0380016993.01.T01:exon
TGTCATCTCTGCTGGACAAA+AGG 0.466508 3:+90414244 MsG0380016993.01.T01:CDS
GAGTATGCTTTCAGTTGAGA+TGG 0.466852 3:+90414450 MsG0380016993.01.T01:CDS
ATTCCGTTGGAATCGTGTGC+TGG 0.467035 3:-90410103 None:intergenic
ACTTCACATGATGCTGTTGA+TGG 0.469085 3:+90416651 MsG0380016993.01.T01:CDS
CACCTGTTTCTCGAGTTCCC+TGG 0.469515 3:-90412579 None:intergenic
AAGAAGTGGAGACCAGATCC+AGG 0.469773 3:+90412561 MsG0380016993.01.T01:CDS
GCAGAGATGACAAGTTCAAA+AGG 0.472999 3:-90414233 None:intergenic
ACTCTCTATGTTTCCTTCCC+CGG 0.475392 3:-90414431 None:intergenic
ATATTGCAGAAGACAGGCTT+CGG 0.478751 3:+90416598 MsG0380016993.01.T01:CDS
TGGAAGCCAAACTGCTGAGC+AGG 0.482141 3:+90413065 MsG0380016993.01.T01:CDS
CGCCATAGGCGTTCGTATGG+TGG 0.486844 3:-90410983 None:intergenic
GTTCACTCAAAGAATATCCT+TGG 0.487117 3:+90413501 MsG0380016993.01.T01:intron
CAAAACAAACACGGAATGAA+AGG 0.487949 3:+90413563 MsG0380016993.01.T01:CDS
ACAGCGTCTCGCTCGTGTCA+TGG 0.491526 3:+90410417 MsG0380016993.01.T01:CDS
AGAAGACCAATGTTCATACT+TGG 0.492813 3:-90414198 None:intergenic
GTCCAGTCTACACGCGGCAG+TGG 0.495833 3:+90410260 MsG0380016993.01.T01:CDS
TTCATCATCAGCTGGAAGAC+CGG 0.498897 3:+90410903 MsG0380016993.01.T01:CDS
GTGATATAAATGATCTTGCC+GGG 0.498998 3:+90414413 MsG0380016993.01.T01:CDS
ATCCACCATACGAACGCCTA+TGG 0.499768 3:+90410981 MsG0380016993.01.T01:CDS
CGTATGGTGGATTTCGGAGG+CGG 0.501048 3:-90410970 None:intergenic
CTGGACTCTCGGTTCTTCTC+CGG 0.502539 3:-90410243 None:intergenic
ACAGACGCCCAAATTTGATT+CGG 0.506139 3:+90414681 MsG0380016993.01.T01:CDS
GCAGGAGAAGGAGATCTATT+CGG 0.512746 3:-90410586 None:intergenic
TTTCAGTTGAGATGGGTTTG+AGG 0.519039 3:+90414458 MsG0380016993.01.T01:CDS
TACTCCAGAATTAAGTGAAG+AGG 0.521502 3:+90416150 MsG0380016993.01.T01:intron
CATGATTGTGAGGATTTATG+TGG 0.521686 3:-90410218 None:intergenic
AGCGGCAATTCAAGCAGCAC+CGG 0.522283 3:+90410283 MsG0380016993.01.T01:CDS
ATAAATGATCTTGCCGGGGA+AGG 0.522445 3:+90414418 MsG0380016993.01.T01:CDS
ATCATCGCCGGTGATGTCGC+CGG 0.523330 3:+90410309 MsG0380016993.01.T01:CDS
GAGAGGTATGCACTAAGAAT+GGG 0.524513 3:+90413203 MsG0380016993.01.T01:CDS
AGTTGCCTGATAGTGATGTC+TGG 0.529058 3:-90412191 None:intergenic
GTAGGACCGAGCCGTGATTG+AGG 0.531559 3:-90410337 None:intergenic
TCTTGGAGAAGGTGTATCCC+TGG 0.533811 3:+90413045 MsG0380016993.01.T01:CDS
ATCATCGTCATCGTCGTCAA+CGG 0.539039 3:-90410449 None:intergenic
CGCAACGGAAATCGGAGGGA+TGG 0.539152 3:-90410560 None:intergenic
GCTCAGCAGTTTGGCTTCCA+GGG 0.539187 3:-90413062 None:intergenic
CATCACCGGCGATGATGAGC+CGG 0.539864 3:-90410302 None:intergenic
CAGCTTGGACTAGGTACTGA+TGG 0.540617 3:+90414367 MsG0380016993.01.T01:intron
TCAACAGCATCATGTGAAGT+TGG 0.541330 3:-90416648 None:intergenic
ATGACAAGTTCAAAAGGAAG+AGG 0.541683 3:-90414227 None:intergenic
AGTATGCTTTCAGTTGAGAT+GGG 0.544442 3:+90414451 MsG0380016993.01.T01:CDS
AAAACAAACACGGAATGAAA+GGG 0.545563 3:+90413564 MsG0380016993.01.T01:CDS
GCTACAAATATTTGCAGGCG+TGG 0.546047 3:+90416529 MsG0380016993.01.T01:CDS
TCAGTTCGTTCATCATCAGC+TGG 0.546757 3:+90410895 MsG0380016993.01.T01:CDS
GTGGAGAGACCGGTGGAAGT+AGG 0.549968 3:-90410355 None:intergenic
TCCAAATATTTAGCATCACC+GGG 0.550653 3:-90415297 None:intergenic
GCGAGAATTACCGCAGGAGA+AGG 0.551504 3:-90410598 None:intergenic
GCGTTTGATGGTGGAGAGAC+CGG 0.553150 3:-90410365 None:intergenic
TCAATCGGAGGTACCGCCAT+AGG 0.554332 3:-90410997 None:intergenic
GTCTACACGCGGCAGTGGAG+CGG 0.555759 3:+90410265 MsG0380016993.01.T01:CDS
CTCTGCTGGACAAAAGGCTA+AGG 0.556195 3:+90414250 MsG0380016993.01.T01:CDS
GAGAGCTTTATTTCATGGTG+TGG 0.558475 3:+90416569 MsG0380016993.01.T01:CDS
AGGAAGATATTGCAGAAGAC+AGG 0.560279 3:+90416592 MsG0380016993.01.T01:CDS
GGATGCGCCGGCGACATCAC+CGG 0.561221 3:-90410316 None:intergenic
TTCTCCGGTCCATGATTGTG+AGG 0.562510 3:-90410228 None:intergenic
CAGCACCGGCTCATCATCGC+CGG 0.563685 3:+90410297 MsG0380016993.01.T01:CDS
CGCCGGCGCATCCTCAATCA+CGG 0.569206 3:+90410326 MsG0380016993.01.T01:CDS
GTGAAATGTTACAAGTGTCT+AGG 0.570143 3:+90415476 MsG0380016993.01.T01:CDS
AGATCTATTCGGTCTCGCAA+CGG 0.573700 3:-90410575 None:intergenic
CGTGGTTAACTTATTTCTGG+AGG 0.574809 3:+90416547 MsG0380016993.01.T01:CDS
TGCTGGACAAAAGGCTAAGG+AGG 0.574889 3:+90414253 MsG0380016993.01.T01:CDS
GAGAAAGAAGAAAGAGCAGA+AGG 0.575083 3:-90410505 None:intergenic
CTGCAGCAGCAGAGGAACAA+CGG 0.575389 3:+90413746 MsG0380016993.01.T01:CDS
TACCGCCATAGGCGTTCGTA+TGG 0.575928 3:-90410986 None:intergenic
AAAGAAGAAAGAGCAGAAGG+AGG 0.583162 3:-90410502 None:intergenic
AGCTTTATTTCATGGTGTGG+AGG 0.585098 3:+90416572 MsG0380016993.01.T01:CDS
AGATGACGCTGCAGCAGCAG+AGG 0.585454 3:+90413738 MsG0380016993.01.T01:CDS
AGCCGTGATTGAGGATGCGC+CGG 0.587313 3:-90410328 None:intergenic
AGTTGGTGACTGTCCACTGC+GGG 0.589051 3:-90416631 None:intergenic
AAGTGGTCCTGAAGAGATGT+TGG 0.590236 3:+90413928 MsG0380016993.01.T01:CDS
GCGCATCCTCAATCACGGCT+CGG 0.591623 3:+90410331 MsG0380016993.01.T01:CDS
GTTCGTATGGTGGATTTCGG+AGG 0.592589 3:-90410973 None:intergenic
AGAAGCCGAAGCCGTAGCAA+AGG 0.592956 3:+90413771 MsG0380016993.01.T01:CDS
TGATTGAAGAGCCTTTGCTA+CGG 0.596284 3:-90413782 None:intergenic
GACACTTGTAACATTTCACA+AGG 0.597126 3:-90415472 None:intergenic
GGAATCGTGTGCTGGTATGT+AGG 0.598198 3:-90410095 None:intergenic
ACGAGCGAGACGCTGTGCGG+CGG 0.598377 3:-90410410 None:intergenic
AGCTGCTTTGCGTCAAAGAG+AGG 0.599240 3:+90413186 MsG0380016993.01.T01:CDS
GTCTCGCAACGGAAATCGGA+GGG 0.602538 3:-90410564 None:intergenic
CCGCGTGTAGACTGGACTCT+CGG 0.604412 3:-90410254 None:intergenic
AAATCCTCACAATCATGGAC+CGG 0.605575 3:+90410224 MsG0380016993.01.T01:exon
GCTGATCGAACCGAAACCGC+CGG 0.607453 3:-90410922 None:intergenic
CAATTATTACACACAAGAAG+CGG 0.609019 3:+90410061 None:intergenic
AAGGAGGCGGAGCACTGTAA+CGG 0.610453 3:-90410486 None:intergenic
CACCATACGAACGCCTATGG+CGG 0.612551 3:+90410984 MsG0380016993.01.T01:CDS
TCATGGCTGCAAAACAAACA+CGG 0.613528 3:+90413554 MsG0380016993.01.T01:CDS
AACACGGAATGAAAGGGATG+AGG 0.620060 3:+90413570 MsG0380016993.01.T01:CDS
CAATCAGGAATAAAGAGAAG+AGG 0.620486 3:+90411028 MsG0380016993.01.T01:CDS
CGGCTCGGTCCTACTTCCAC+CGG 0.622316 3:+90410346 MsG0380016993.01.T01:CDS
TACTCAGCTAAGACTAGCAG+AGG 0.623006 3:+90412529 MsG0380016993.01.T01:intron
TGTTGGCTTGCTCGCTACTG+GGG 0.628223 3:+90413945 MsG0380016993.01.T01:CDS
ATCATCAGCTGGAAGACCGG+CGG 0.633397 3:+90410906 MsG0380016993.01.T01:CDS
CACAGTCCAAGTATGAACAT+TGG 0.636014 3:+90414192 MsG0380016993.01.T01:CDS
TGGGGTCTTTCTGTAAAACA+TGG 0.652306 3:+90413963 MsG0380016993.01.T01:CDS
GCAACTTAACTCCAAAGACA+CGG 0.656597 3:+90412208 MsG0380016993.01.T01:CDS
CAACTTAACTCCAAAGACAC+GGG 0.658234 3:+90412209 MsG0380016993.01.T01:CDS
ATACCAGCACACGATTCCAA+CGG 0.659225 3:+90410100 MsG0380016993.01.T01:five_prime_UTR
CTACCTGAATTTCGACACGA+AGG 0.659616 3:-90413603 None:intergenic
AGAAGTGGAGACCAGATCCA+GGG 0.665136 3:+90412562 MsG0380016993.01.T01:CDS
GGTCTCGCAACGGAAATCGG+AGG 0.666488 3:-90410565 None:intergenic
TACCTGAATTTCGACACGAA+GGG 0.669846 3:-90413602 None:intergenic
GAATAGATCTCCTTCTCCTG+CGG 0.669858 3:+90410588 MsG0380016993.01.T01:CDS
GTAAATACTATACTTCATCA+CGG 0.671876 3:-90412256 None:intergenic
TGATATAAATGATCTTGCCG+GGG 0.682107 3:+90414414 MsG0380016993.01.T01:CDS
TGCCTGATAGTGATGTCTGG+TGG 0.682242 3:-90412188 None:intergenic
GACACGAGCGAGACGCTGTG+CGG 0.698792 3:-90410413 None:intergenic
TTGGGCTAATGCAAGCACAA+CGG 0.701529 3:-90414657 None:intergenic
CCGAGAGTCCAGTCTACACG+CGG 0.705247 3:+90410254 MsG0380016993.01.T01:CDS
ATTGTTGGAGGATCAATCGG+AGG 0.708364 3:-90411009 None:intergenic
TTTGATGGTGGAGAGACCGG+TGG 0.710364 3:-90410362 None:intergenic
ACACTTGTAACATTTCACAA+GGG 0.710853 3:-90415471 None:intergenic
AAGTTGGTGACTGTCCACTG+CGG 0.748822 3:-90416632 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTATGTCTTTT+AGG + Chr3:90413902-90413921 MsG0380016993.01.T01:intron 10.0%
!!! TATCATTTTCTTATTTATTT+TGG + Chr3:90411874-90411893 MsG0380016993.01.T01:intron 10.0%
!! AATACTGAAATTAAAAGAAT+AGG - Chr3:90415380-90415399 None:intergenic 15.0%
!! AATATTTGTAGCTTATAAAT+TGG - Chr3:90416521-90416540 None:intergenic 15.0%
!! AGTTGAAATATTTATCTTTA+TGG + Chr3:90411360-90411379 MsG0380016993.01.T01:intron 15.0%
!! ATAAATATGATCAGAAAATA+AGG - Chr3:90411935-90411954 None:intergenic 15.0%
!! CATTTCCATTTATAAATTAA+CGG - Chr3:90416081-90416100 None:intergenic 15.0%
!! TCTTAATCTGTATTTATTTA+TGG + Chr3:90412046-90412065 MsG0380016993.01.T01:intron 15.0%
!! TGAAATTTCTATAAACAATA+TGG + Chr3:90411304-90411323 MsG0380016993.01.T01:intron 15.0%
!!! AATAAGAACTGATTTTATTT+CGG - Chr3:90412474-90412493 None:intergenic 15.0%
!!! AATCTTTGAATTTTAATCAT+TGG + Chr3:90412148-90412167 MsG0380016993.01.T01:intron 15.0%
!!! AATTCTTATTATCTTATTTC+TGG + Chr3:90416683-90416702 MsG0380016993.01.T01:CDS 15.0%
!!! ATATTATTCTTCTTTTCAAT+TGG + Chr3:90415912-90415931 MsG0380016993.01.T01:intron 15.0%
!!! ATTATGAAATTATTGATGAT+AGG + Chr3:90413242-90413261 MsG0380016993.01.T01:intron 15.0%
!!! ATTTTCTGATCATATTTATT+AGG + Chr3:90411936-90411955 MsG0380016993.01.T01:intron 15.0%
!!! TATTCTTTTAATTTCAGTAT+TGG + Chr3:90415379-90415398 MsG0380016993.01.T01:intron 15.0%
!!! TTTTGATGTTTTTATTAGTT+AGG + Chr3:90410847-90410866 MsG0380016993.01.T01:intron 15.0%
!! AAAAAAAAACTCAAAGATTC+TGG - Chr3:90414943-90414962 None:intergenic 20.0%
!! AACCTAGAAAAAGAAAAATT+GGG - Chr3:90411564-90411583 None:intergenic 20.0%
!! CTAAATAAAGGTAATAAAGT+GGG + Chr3:90411789-90411808 MsG0380016993.01.T01:intron 20.0%
!! GAAGTAATTCCATAAATAAT+AGG - Chr3:90415975-90415994 None:intergenic 20.0%
!! TATACACTACCTATTATTTA+TGG + Chr3:90415963-90415982 MsG0380016993.01.T01:intron 20.0%
!! TCTAAATAAAGGTAATAAAG+TGG + Chr3:90411788-90411807 MsG0380016993.01.T01:intron 20.0%
!! TTAATTCAGTATTATTGAGA+AGG + Chr3:90413322-90413341 MsG0380016993.01.T01:intron 20.0%
!! TTTAGCCGTTAATTTATAAA+TGG + Chr3:90416073-90416092 MsG0380016993.01.T01:intron 20.0%
!! TTTATAAATGGAAATGTGTA+TGG + Chr3:90416085-90416104 MsG0380016993.01.T01:intron 20.0%
!! TTTATCATAAATCAGCTATA+CGG - Chr3:90411222-90411241 None:intergenic 20.0%
!!! AAGTATTTACTTTTTACCAT+CGG + Chr3:90413872-90413891 MsG0380016993.01.T01:intron 20.0%
!!! AATTCTGTAACAACATTTTA+AGG - Chr3:90416270-90416289 None:intergenic 20.0%
!!! AATTCTTATTTTTTAGGTTG+AGG + Chr3:90414631-90414650 MsG0380016993.01.T01:intron 20.0%
!!! AGCAAAATTTTACTAGTTAA+AGG - Chr3:90415869-90415888 None:intergenic 20.0%
!!! ATAAACAATATGGTTTTTGT+AGG + Chr3:90411314-90411333 MsG0380016993.01.T01:intron 20.0%
!!! TAAACAATATGGTTTTTGTA+GGG + Chr3:90411315-90411334 MsG0380016993.01.T01:intron 20.0%
!!! TGCTTTTATTGTGTTTAATT+TGG + Chr3:90415412-90415431 MsG0380016993.01.T01:CDS 20.0%
!!! TTAAGTCAGATTTATTTCTT+AGG + Chr3:90416401-90416420 MsG0380016993.01.T01:intron 20.0%
!!! TTATTTTGGACATATATAAG+AGG + Chr3:90411888-90411907 MsG0380016993.01.T01:intron 20.0%
!!! TTTATCTTTATGGTTTGTTT+CGG + Chr3:90411370-90411389 MsG0380016993.01.T01:intron 20.0%
!!! TTTGTTCATTTTTTTGTTCA+TGG + Chr3:90413135-90413154 MsG0380016993.01.T01:intron 20.0%
!!! TTTTGAGTTTAGTAATTAGA+GGG + Chr3:90414961-90414980 MsG0380016993.01.T01:intron 20.0%
!!! TTTTTGAGTTTAGTAATTAG+AGG + Chr3:90414960-90414979 MsG0380016993.01.T01:intron 20.0%
!!! TTTTTTTTATGTCTTTTAGG+AGG + Chr3:90413905-90413924 MsG0380016993.01.T01:intron 20.0%
! AAAAAATTAATTGAGACCGA+TGG - Chr3:90413891-90413910 None:intergenic 25.0%
! AAAATATGGCATCAAAACTA+TGG - Chr3:90412868-90412887 None:intergenic 25.0%
! AAAATTAACAAGTCATCATC+AGG - Chr3:90416118-90416137 None:intergenic 25.0%
! AAAATTATAACCCTCCAATA+TGG - Chr3:90411590-90411609 None:intergenic 25.0%
! AAATTATAACCCTCCAATAT+GGG - Chr3:90411589-90411608 None:intergenic 25.0%
! AAGAAAGAATAAACAATAGG+AGG + Chr3:90412680-90412699 MsG0380016993.01.T01:intron 25.0%
! AATACATTCTATAATGCAGA+TGG - Chr3:90415512-90415531 None:intergenic 25.0%
! AATTAACATAACCAACTACA+AGG - Chr3:90412319-90412338 None:intergenic 25.0%
! ACAATTCTTACCATATTAAC+TGG + Chr3:90414834-90414853 MsG0380016993.01.T01:intron 25.0%
! AGAAAAAGAAAAATTGGGAA+GGG - Chr3:90411559-90411578 None:intergenic 25.0%
! AGGAAATAATCCAGTTAATA+TGG - Chr3:90414847-90414866 None:intergenic 25.0%
! ATCACGTAATTGAATCAAAA+CGG - Chr3:90410623-90410642 None:intergenic 25.0%
! ATGTATGCATATTTGTGTAA+AGG + Chr3:90413349-90413368 MsG0380016993.01.T01:intron 25.0%
! CACAAGAAAGAATAAACAAT+AGG + Chr3:90412677-90412696 MsG0380016993.01.T01:intron 25.0%
! CATCGTATATCTATCTATAT+TGG + Chr3:90412070-90412089 MsG0380016993.01.T01:intron 25.0%
! GAACCTAGAAAAAGAAAAAT+TGG - Chr3:90411565-90411584 None:intergenic 25.0%
! GATACTATAAAAAGAGGAAA+AGG + Chr3:90411501-90411520 MsG0380016993.01.T01:intron 25.0%
! GTAAATACTATACTTCATCA+CGG - Chr3:90412259-90412278 None:intergenic 25.0%
! GTGGAGAAAAAAATAATGAT+CGG + Chr3:90410670-90410689 MsG0380016993.01.T01:intron 25.0%
! GTTTCAGATACTATAAAAAG+AGG + Chr3:90411495-90411514 MsG0380016993.01.T01:intron 25.0%
! TAGAAAAAGAAAAATTGGGA+AGG - Chr3:90411560-90411579 None:intergenic 25.0%
! TATAAGCTACAAATATTTGC+AGG + Chr3:90416524-90416543 MsG0380016993.01.T01:CDS 25.0%
! TCAATCAAACAAAAAAGGAA+AGG - Chr3:90414867-90414886 None:intergenic 25.0%
! TGTATGCATATTTGTGTAAA+GGG + Chr3:90413350-90413369 MsG0380016993.01.T01:intron 25.0%
! TTATGGAATTACTTCTTCTA+CGG + Chr3:90415980-90415999 MsG0380016993.01.T01:intron 25.0%
! TTCTGATCATATTTATTAGG+AGG + Chr3:90411939-90411958 MsG0380016993.01.T01:intron 25.0%
!! ATTGGAGGGTTATAATTTTA+CGG + Chr3:90411591-90411610 MsG0380016993.01.T01:intron 25.0%
!! GAATTTTTGTTGCAAAATTC+TGG + Chr3:90410810-90410829 MsG0380016993.01.T01:intron 25.0%
!! TATTCTTCTTTTCAATTGGT+GGG + Chr3:90415916-90415935 MsG0380016993.01.T01:intron 25.0%
!! TTATTCTTCTTTTCAATTGG+TGG + Chr3:90415915-90415934 MsG0380016993.01.T01:intron 25.0%
!! TTATTTCTTAGGAAATTGAG+TGG + Chr3:90416412-90416431 MsG0380016993.01.T01:intron 25.0%
!! TTCCCAATTTTTCTTTTTCT+AGG + Chr3:90411559-90411578 MsG0380016993.01.T01:intron 25.0%
!!! AACCAAAAAAGTGTTTACAA+GGG - Chr3:90412826-90412845 None:intergenic 25.0%
!!! AATCATTGGTTTATGATTTC+AGG + Chr3:90412162-90412181 MsG0380016993.01.T01:intron 25.0%
!!! GATGTTTTTATTAGTTAGGT+CGG + Chr3:90410851-90410870 MsG0380016993.01.T01:intron 25.0%
!!! TATACTATTATTAGCTCTAC+CGG - Chr3:90411139-90411158 None:intergenic 25.0%
!!! TGTAATGGATAGTTATTTGA+AGG + Chr3:90411748-90411767 MsG0380016993.01.T01:intron 25.0%
!!! TTATTAACTTTGAAACTGCT+AGG + Chr3:90412616-90412635 MsG0380016993.01.T01:intron 25.0%
!!! TTATTTTTCTACTTCTCTTC+TGG + Chr3:90414739-90414758 MsG0380016993.01.T01:intron 25.0%
AAAAACACAAACTCTACCAA+GGG - Chr3:90411188-90411207 None:intergenic 30.0%
AAAACAAACACGGAATGAAA+GGG + Chr3:90413564-90413583 MsG0380016993.01.T01:CDS 30.0%
AAATACTGACCATTTCTTCT+TGG - Chr3:90413831-90413850 None:intergenic 30.0%
AAATTTAGAAGAGCTAGACA+TGG + Chr3:90411239-90411258 MsG0380016993.01.T01:intron 30.0%
AATAAACAATAGGAGGTTAG+TGG + Chr3:90412687-90412706 MsG0380016993.01.T01:intron 30.0%
AATAAATCTGACTTAAGCAG+AGG - Chr3:90416397-90416416 None:intergenic 30.0%
AATACTGACCATTTCTTCTT+GGG - Chr3:90413830-90413849 None:intergenic 30.0%
AATCTCTTTCAAGATCCATT+GGG + Chr3:90415671-90415690 MsG0380016993.01.T01:intron 30.0%
ACACTCTGTTCTCTAAATAA+AGG + Chr3:90411777-90411796 MsG0380016993.01.T01:intron 30.0%
ACACTTGTAACATTTCACAA+GGG - Chr3:90415474-90415493 None:intergenic 30.0%
ATAAACAATAGGAGGTTAGT+GGG + Chr3:90412688-90412707 MsG0380016993.01.T01:intron 30.0%
ATAAATCTGACTTAAGCAGA+GGG - Chr3:90416396-90416415 None:intergenic 30.0%
ATATACAAGCAAAAACACAC+CGG - Chr3:90416035-90416054 None:intergenic 30.0%
ATATGCCTGAGCATAAAAAT+AGG + Chr3:90412640-90412659 MsG0380016993.01.T01:intron 30.0%
ATGTGTGCTTATAATTTACG+TGG + Chr3:90414126-90414145 MsG0380016993.01.T01:intron 30.0%
CAAAAATATTGAGTACTCCA+AGG - Chr3:90413521-90413540 None:intergenic 30.0%
CAGAAGTTAACTAAGTTTCA+CGG + Chr3:90412787-90412806 MsG0380016993.01.T01:intron 30.0%
CATAGTGATTGTGCAAAATA+TGG - Chr3:90412882-90412901 None:intergenic 30.0%
CATTTATATCACGAACAGTT+TGG - Chr3:90414405-90414424 None:intergenic 30.0%
CCACTCAATATTTCATATCA+AGG - Chr3:90416471-90416490 None:intergenic 30.0%
CCTTGATATGAAATATTGAG+TGG + Chr3:90416468-90416487 MsG0380016993.01.T01:intron 30.0%
CTGACAATGTGTTAATAAGT+GGG + Chr3:90415575-90415594 MsG0380016993.01.T01:intron 30.0%
CTGACAATGTGTTTATAAGT+GGG + Chr3:90415778-90415797 MsG0380016993.01.T01:intron 30.0%
CTTTAAATTCCCTTATATGC+TGG + Chr3:90413096-90413115 MsG0380016993.01.T01:intron 30.0%
GAGCACATAAATAAGAACAA+GGG - Chr3:90415150-90415169 None:intergenic 30.0%
GATGTGGAACTATTTAACAA+AGG - Chr3:90415541-90415560 None:intergenic 30.0%
GCAAACTAAATCCAAAAGAT+TGG + Chr3:90411718-90411737 MsG0380016993.01.T01:intron 30.0%
GCTTGTATATTAGATAGACA+TGG + Chr3:90416045-90416064 MsG0380016993.01.T01:intron 30.0%
GTACATCTAATTAAACAGCT+TGG + Chr3:90414352-90414371 MsG0380016993.01.T01:intron 30.0%
GTATCTACCACACATAATTT+CGG + Chr3:90414587-90414606 MsG0380016993.01.T01:intron 30.0%
GTCATCCAAAACATGATTAT+AGG - Chr3:90416499-90416518 None:intergenic 30.0%
TACAATACACCAAAAATGGA+GGG + Chr3:90415078-90415097 MsG0380016993.01.T01:intron 30.0%
TATGCCTGAGCATAAAAATA+GGG + Chr3:90412641-90412660 MsG0380016993.01.T01:intron 30.0%
TATGGAATTACTTCTTCTAC+GGG + Chr3:90415981-90416000 MsG0380016993.01.T01:intron 30.0%
TATGTGGTTGTGATAGAAAT+CGG + Chr3:90414915-90414934 MsG0380016993.01.T01:intron 30.0%
TCTGACAATGTGTTTATAAG+TGG + Chr3:90415777-90415796 MsG0380016993.01.T01:intron 30.0%
TGACAATGTGTTAATAAGTG+GGG + Chr3:90415576-90415595 MsG0380016993.01.T01:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG + Chr3:90415779-90415798 MsG0380016993.01.T01:intron 30.0%
TGAGCACATAAATAAGAACA+AGG - Chr3:90415151-90415170 None:intergenic 30.0%
TTAAAGGCTCTTAGAAATTG+TGG - Chr3:90415853-90415872 None:intergenic 30.0%
TTCCAAATATTTAGCATCAC+CGG - Chr3:90415301-90415320 None:intergenic 30.0%
TTCTCTTTATTCCTGATTGT+TGG - Chr3:90411027-90411046 None:intergenic 30.0%
TTCTTATTCATGTGACTGAA+AGG + Chr3:90414999-90415018 MsG0380016993.01.T01:intron 30.0%
! ATATAAGGGAATTTAAAGCC+AGG - Chr3:90413094-90413113 None:intergenic 30.0%
! ATTCTTCTTTTCAATTGGTG+GGG + Chr3:90415917-90415936 MsG0380016993.01.T01:intron 30.0%
! CACTTGTTAAACTACTTCAA+TGG + Chr3:90411272-90411291 MsG0380016993.01.T01:intron 30.0%
! GAAAATCGAAGGAAAGTTTT+TGG - Chr3:90410148-90410167 None:intergenic 30.0%
! GAACGATGCTTTATTAGAAA+AGG + Chr3:90412434-90412453 MsG0380016993.01.T01:CDS 30.0%
! GATTTATGTGGAGAATTTTG+CGG - Chr3:90410209-90410228 None:intergenic 30.0%
! TTTTGTTCATGGCTTTTGTT+TGG + Chr3:90413146-90413165 MsG0380016993.01.T01:intron 30.0%
!! CAACCAAAAAAGTGTTTACA+AGG - Chr3:90412827-90412846 None:intergenic 30.0%
!! CTTTTGTTTGGTATATTTGC+AGG + Chr3:90413158-90413177 MsG0380016993.01.T01:intron 30.0%
!! GCTAAATATTTGGAAGCATT+TGG + Chr3:90415306-90415325 MsG0380016993.01.T01:CDS 30.0%
!! GTACTCAATATTTTTGTCAC+AGG + Chr3:90413525-90413544 MsG0380016993.01.T01:CDS 30.0%
!! TGTAACAACATTTTAAGGAC+AGG - Chr3:90416265-90416284 None:intergenic 30.0%
!! TTGTTACTTCCATGCTTTTA+AGG + Chr3:90414152-90414171 MsG0380016993.01.T01:intron 30.0%
!! TTTAATTTGGTGTGCTTTAG+TGG + Chr3:90415425-90415444 MsG0380016993.01.T01:CDS 30.0%
!! TTTGTTGGTAATTTGATGCT+AGG + Chr3:90410723-90410742 MsG0380016993.01.T01:intron 30.0%
!!! AACCCTTGTAAACACTTTTT+TGG + Chr3:90412821-90412840 MsG0380016993.01.T01:intron 30.0%
!!! CCTTTTTTGTTTGATTGATG+CGG + Chr3:90414869-90414888 MsG0380016993.01.T01:intron 30.0%
!!! GGATCATCAGATTGATTTTT+TGG - Chr3:90412298-90412317 None:intergenic 30.0%
!!! TCAATTCGTTTTTTGACTTG+TGG + Chr3:90410651-90410670 MsG0380016993.01.T01:intron 30.0%
!!! TTGTTTTAGTTTTTCAGCTG+CGG + Chr3:90411077-90411096 MsG0380016993.01.T01:intron 30.0%
AAATTCCCTTATATGCTGGT+CGG + Chr3:90413100-90413119 MsG0380016993.01.T01:intron 35.0%
AACTAAGTTTCACGGTTGTA+AGG + Chr3:90412795-90412814 MsG0380016993.01.T01:intron 35.0%
AACTTGAAGAGCTAGTATAG+TGG - Chr3:90413302-90413321 None:intergenic 35.0%
AAGATTGGAAGCTGTTGTAA+TGG + Chr3:90411733-90411752 MsG0380016993.01.T01:intron 35.0%
AATCTGATGATCCTTGTAGT+TGG + Chr3:90412305-90412324 MsG0380016993.01.T01:intron 35.0%
ACTAAGTTTCACGGTTGTAA+GGG + Chr3:90412796-90412815 MsG0380016993.01.T01:intron 35.0%
AGAAAGAATATAGCTGCAAC+TGG - Chr3:90413443-90413462 None:intergenic 35.0%
AGAAGACCAATGTTCATACT+TGG - Chr3:90414201-90414220 None:intergenic 35.0%
AGCACTAGAATTTCTGTTAC+TGG - Chr3:90410530-90410549 None:intergenic 35.0%
AGTATGCTTTCAGTTGAGAT+GGG + Chr3:90414451-90414470 MsG0380016993.01.T01:CDS 35.0%
ATAGGAACCGAAATTATGTG+TGG - Chr3:90414597-90414616 None:intergenic 35.0%
ATGACAAGTTCAAAAGGAAG+AGG - Chr3:90414230-90414249 None:intergenic 35.0%
ATTAACAAGTCATCATCAGG+TGG - Chr3:90416115-90416134 None:intergenic 35.0%
CAAAAACACAAACTCTACCA+AGG - Chr3:90411189-90411208 None:intergenic 35.0%
CAAAACAAACACGGAATGAA+AGG + Chr3:90413563-90413582 MsG0380016993.01.T01:CDS 35.0%
CAATAATGTTCTCTCAGACA+AGG - Chr3:90411434-90411453 None:intergenic 35.0%
CAATCAGGAATAAAGAGAAG+AGG + Chr3:90411028-90411047 MsG0380016993.01.T01:CDS 35.0%
CACATAAATCCTCACAATCA+TGG + Chr3:90410219-90410238 MsG0380016993.01.T01:exon 35.0%
CATGATTGTGAGGATTTATG+TGG - Chr3:90410221-90410240 None:intergenic 35.0%
CCACTTATTAACACATTGTC+AGG - Chr3:90415577-90415596 None:intergenic 35.0%
CCGCATCAATCAAACAAAAA+AGG - Chr3:90414872-90414891 None:intergenic 35.0%
CCTGACAATGTGTTAATAAG+TGG + Chr3:90415574-90415593 MsG0380016993.01.T01:intron 35.0%
CGTGATATAAATGATCTTGC+CGG + Chr3:90414412-90414431 MsG0380016993.01.T01:CDS 35.0%
CTAATTAAACAGCTTGGACT+AGG + Chr3:90414358-90414377 MsG0380016993.01.T01:intron 35.0%
CTTGTCTGAGAGAACATTAT+TGG + Chr3:90411432-90411451 MsG0380016993.01.T01:intron 35.0%
GAATCTCTTTCAAGATCCAT+TGG + Chr3:90415670-90415689 MsG0380016993.01.T01:intron 35.0%
GACAATGTGTTAATAAGTGG+GGG + Chr3:90415577-90415596 MsG0380016993.01.T01:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG + Chr3:90415780-90415799 MsG0380016993.01.T01:intron 35.0%
GACACTTGTAACATTTCACA+AGG - Chr3:90415475-90415494 None:intergenic 35.0%
GCTCAGTATTATAATACCCT+TGG + Chr3:90411169-90411188 MsG0380016993.01.T01:intron 35.0%
GTACAATACACCAAAAATGG+AGG + Chr3:90415077-90415096 MsG0380016993.01.T01:intron 35.0%
GTGAAATGTTACAAGTGTCT+AGG + Chr3:90415476-90415495 MsG0380016993.01.T01:CDS 35.0%
GTGAGATCTGATCTGATTTA+TGG + Chr3:90410758-90410777 MsG0380016993.01.T01:intron 35.0%
GTGATATAAATGATCTTGCC+GGG + Chr3:90414413-90414432 MsG0380016993.01.T01:CDS 35.0%
GTGTAACGATTTGTCATATG+TGG + Chr3:90414899-90414918 MsG0380016993.01.T01:intron 35.0%
GTTCACTCAAAGAATATCCT+TGG + Chr3:90413501-90413520 MsG0380016993.01.T01:intron 35.0%
GTTGTTTGTGTTTGTACAGA+GGG + Chr3:90414541-90414560 MsG0380016993.01.T01:intron 35.0%
TACACTAACGGTTATGAAGT+AGG + Chr3:90412716-90412735 MsG0380016993.01.T01:intron 35.0%
TACAGTTGTTTGTGGCTAAT+AGG + Chr3:90412109-90412128 MsG0380016993.01.T01:intron 35.0%
TACTCCAGAATTAAGTGAAG+AGG + Chr3:90416150-90416169 MsG0380016993.01.T01:intron 35.0%
TATAGTGGCTTATCAAGCAA+GGG - Chr3:90413287-90413306 None:intergenic 35.0%
TATTAGGAGGTCGAGTATTT+GGG + Chr3:90411952-90411971 MsG0380016993.01.T01:intron 35.0%
TCAGAAAATAAGGAGCAAGA+TGG - Chr3:90411925-90411944 None:intergenic 35.0%
TCATACCATCTTAGTAATCG+TGG - Chr3:90415650-90415669 None:intergenic 35.0%
TCCAAATATTTAGCATCACC+GGG - Chr3:90415300-90415319 None:intergenic 35.0%
TCTACAAAACCATTCTGCTT+TGG - Chr3:90415216-90415235 None:intergenic 35.0%
TCTGAGAGAACATTATTGGA+GGG + Chr3:90411436-90411455 MsG0380016993.01.T01:intron 35.0%
TCTTTATTCCTGATTGTTGG+AGG - Chr3:90411024-90411043 None:intergenic 35.0%
TGATATAAATGATCTTGCCG+GGG + Chr3:90414414-90414433 MsG0380016993.01.T01:CDS 35.0%
TGATGTTGAATGTAAACACG+TGG + Chr3:90412503-90412522 MsG0380016993.01.T01:intron 35.0%
TGCGTACAATACACCAAAAA+TGG + Chr3:90415074-90415093 MsG0380016993.01.T01:intron 35.0%
TGTGTTAAATTGTCCCACTT+CGG + Chr3:90415743-90415762 MsG0380016993.01.T01:intron 35.0%
TTATTAGGAGGTCGAGTATT+TGG + Chr3:90411951-90411970 MsG0380016993.01.T01:intron 35.0%
TTCTACTAGCATTAGTGTTG+TGG + Chr3:90416295-90416314 MsG0380016993.01.T01:intron 35.0%
TTTCAATTGGTGGGGAAATT+AGG + Chr3:90415925-90415944 MsG0380016993.01.T01:intron 35.0%
! ACGCTCCTATAATCATGTTT+TGG + Chr3:90416491-90416510 MsG0380016993.01.T01:CDS 35.0%
! CTCTTTGAAAAGAACGTCTT+CGG - Chr3:90416179-90416198 None:intergenic 35.0%
! GATTTTCTCGAGAAAATCGA+AGG - Chr3:90410159-90410178 None:intergenic 35.0%
! TACAACAGCTTCCAATCTTT+TGG - Chr3:90411732-90411751 None:intergenic 35.0%
! TGAGCTTAGTGAACTTTTGT+TGG + Chr3:90410708-90410727 MsG0380016993.01.T01:intron 35.0%
! TGTAAAGGGTCATGATTTGT+CGG + Chr3:90413364-90413383 MsG0380016993.01.T01:intron 35.0%
! TGTTGTTTGTGTTTGTACAG+AGG + Chr3:90414540-90414559 MsG0380016993.01.T01:intron 35.0%
! TTGTGTTTTGTAGAGCTTTC+CGG + Chr3:90411117-90411136 MsG0380016993.01.T01:intron 35.0%
! TTTTCAGATTCCAAATCACC+CGG + Chr3:90415279-90415298 MsG0380016993.01.T01:intron 35.0%
! TTTTCTAGGTTCACCCATAT+TGG + Chr3:90411573-90411592 MsG0380016993.01.T01:intron 35.0%
!! AAGGAAAGTTTTTGGAGAAG+AGG - Chr3:90410140-90410159 None:intergenic 35.0%
!! ATTTAGTTTGCGAGTTAGGA+GGG - Chr3:90411709-90411728 None:intergenic 35.0%
!! GATTTTGACCCAAGAAGAAA+TGG + Chr3:90413819-90413838 MsG0380016993.01.T01:CDS 35.0%
!! TATGGTTTGTTTCGGAGTTA+GGG + Chr3:90411378-90411397 MsG0380016993.01.T01:intron 35.0%
!! TTATGGTTTGTTTCGGAGTT+AGG + Chr3:90411377-90411396 MsG0380016993.01.T01:intron 35.0%
!! TTATGTCTTTTAGGAGGAAG+TGG + Chr3:90413911-90413930 MsG0380016993.01.T01:intron 35.0%
!! TTGGATTTAGTTTGCGAGTT+AGG - Chr3:90411713-90411732 None:intergenic 35.0%
!! TTTTTGTTTGATTGATGCGG+TGG + Chr3:90414872-90414891 MsG0380016993.01.T01:intron 35.0%
!!! GAGATTATGGTGGATTTTCT+CGG - Chr3:90410187-90410206 None:intergenic 35.0%
!!! GTTGTCAGCTTTTGGTTTTT+TGG + Chr3:90415339-90415358 MsG0380016993.01.T01:intron 35.0%
AAAAGGCTAAGGAGGAATCT+TGG + Chr3:90414261-90414280 MsG0380016993.01.T01:CDS 40.0%
AAAAGTAAACCCCTCATGCA+AGG + Chr3:90411616-90411635 MsG0380016993.01.T01:intron 40.0%
AAAGAAGAAAGAGCAGAAGG+AGG - Chr3:90410505-90410524 None:intergenic 40.0%
AAAGGAAAGGGACCAGAAAT+GGG - Chr3:90411655-90411674 None:intergenic 40.0%
AAATAAGAACAAGGGAAGCC+CGG - Chr3:90415142-90415161 None:intergenic 40.0%
AAATCCTCACAATCATGGAC+CGG + Chr3:90410224-90410243 MsG0380016993.01.T01:exon 40.0%
AAATTGGGAAGGGACTTTAG+AGG - Chr3:90411549-90411568 None:intergenic 40.0%
AATTGGGAAGGGACTTTAGA+GGG - Chr3:90411548-90411567 None:intergenic 40.0%
ACAGACGCCCAAATTTGATT+CGG + Chr3:90414681-90414700 MsG0380016993.01.T01:CDS 40.0%
ACAGACTGCCGAATCAAATT+TGG - Chr3:90414692-90414711 None:intergenic 40.0%
ACCATCTTAGTAATCGTGGT+TGG - Chr3:90415646-90415665 None:intergenic 40.0%
ACCCGGTGATGCTAAATATT+TGG + Chr3:90415296-90415315 MsG0380016993.01.T01:CDS 40.0%
ACTTCACATGATGCTGTTGA+TGG + Chr3:90416651-90416670 MsG0380016993.01.T01:CDS 40.0%
AGCAACAAGTTCGTAAATGC+TGG + Chr3:90413479-90413498 MsG0380016993.01.T01:intron 40.0%
AGCCTCTTGTGTAAAACACA+GGG + Chr3:90415045-90415064 MsG0380016993.01.T01:intron 40.0%
AGGAAGATATTGCAGAAGAC+AGG + Chr3:90416592-90416611 MsG0380016993.01.T01:CDS 40.0%
AGGCGTGGTTAACTTATTTC+TGG + Chr3:90416544-90416563 MsG0380016993.01.T01:CDS 40.0%
AGGCTCTTAGAAATTGTGGT+TGG - Chr3:90415849-90415868 None:intergenic 40.0%
ATAGCAGGAACTGTACAGAT+GGG + Chr3:90412746-90412765 MsG0380016993.01.T01:intron 40.0%
ATATTGCAGAAGACAGGCTT+CGG + Chr3:90416598-90416617 MsG0380016993.01.T01:CDS 40.0%
CAACTTAACTCCAAAGACAC+GGG + Chr3:90412209-90412228 MsG0380016993.01.T01:CDS 40.0%
CACAGTCCAAGTATGAACAT+TGG + Chr3:90414192-90414211 MsG0380016993.01.T01:CDS 40.0%
CAGACTGCCGAATCAAATTT+GGG - Chr3:90414691-90414710 None:intergenic 40.0%
CCATCTTAGTAATCGTGGTT+GGG - Chr3:90415645-90415664 None:intergenic 40.0%
CGAAATTCAGGTAGGTTTGA+AGG + Chr3:90413612-90413631 MsG0380016993.01.T01:intron 40.0%
CTAAGTTTCACGGTTGTAAG+GGG + Chr3:90412797-90412816 MsG0380016993.01.T01:intron 40.0%
CTGAGAGAACATTATTGGAG+GGG + Chr3:90411437-90411456 MsG0380016993.01.T01:intron 40.0%
CTGAGCATAAAAATAGGGTC+TGG + Chr3:90412646-90412665 MsG0380016993.01.T01:intron 40.0%
CTGATTGTTGGAGGATCAAT+CGG - Chr3:90411015-90411034 None:intergenic 40.0%
CTTACACAAACCCACAAAAC+CGG - Chr3:90415621-90415640 None:intergenic 40.0%
CTTGTGTAAAACACAGGGTA+AGG + Chr3:90415050-90415069 MsG0380016993.01.T01:intron 40.0%
GAACAAAAGTGAGCATGAGT+TGG + Chr3:90414283-90414302 MsG0380016993.01.T01:intron 40.0%
GAGAAAGAAGAAAGAGCAGA+AGG - Chr3:90410508-90410527 None:intergenic 40.0%
GAGTATGCTTTCAGTTGAGA+TGG + Chr3:90414450-90414469 MsG0380016993.01.T01:CDS 40.0%
GCAACTTAACTCCAAAGACA+CGG + Chr3:90412208-90412227 MsG0380016993.01.T01:CDS 40.0%
GCACATATGCCTTAAAAGCA+TGG - Chr3:90414164-90414183 None:intergenic 40.0%
GCAGAGATGACAAGTTCAAA+AGG - Chr3:90414236-90414255 None:intergenic 40.0%
GCATAAAAATAGGGTCTGGA+AGG + Chr3:90412650-90412669 MsG0380016993.01.T01:intron 40.0%
GCTTCCTCTTCACTTAATTC+TGG - Chr3:90416157-90416176 None:intergenic 40.0%
GGCTCTTAGAAATTGTGGTT+GGG - Chr3:90415848-90415867 None:intergenic 40.0%
GTATAGTGGCTTATCAAGCA+AGG - Chr3:90413288-90413307 None:intergenic 40.0%
GTCTGAGAGAACATTATTGG+AGG + Chr3:90411435-90411454 MsG0380016993.01.T01:intron 40.0%
GTTAGTGTTCCAAAGCAGAA+TGG + Chr3:90415204-90415223 MsG0380016993.01.T01:intron 40.0%
GTTCCACATCTGATAAGAGA+TGG + Chr3:90415551-90415570 MsG0380016993.01.T01:intron 40.0%
TACCTGAATTTCGACACGAA+GGG - Chr3:90413605-90413624 None:intergenic 40.0%
TACTGCACTACAGTTGTTTG+TGG + Chr3:90412101-90412120 MsG0380016993.01.T01:intron 40.0%
TAGCCTCTTGTGTAAAACAC+AGG + Chr3:90415044-90415063 MsG0380016993.01.T01:intron 40.0%
TATCTATATTCCACCTGCAG+CGG + Chr3:90414809-90414828 MsG0380016993.01.T01:intron 40.0%
TCAACAGCATCATGTGAAGT+TGG - Chr3:90416651-90416670 None:intergenic 40.0%
TCATGGCTGCAAAACAAACA+CGG + Chr3:90413554-90413573 MsG0380016993.01.T01:CDS 40.0%
TGATTGAAGAGCCTTTGCTA+CGG - Chr3:90413785-90413804 None:intergenic 40.0%
TGGGGTCTTTCTGTAAAACA+TGG + Chr3:90413963-90413982 MsG0380016993.01.T01:CDS 40.0%
TTCATGTGACTGAAAGGTCA+CGG + Chr3:90415005-90415024 MsG0380016993.01.T01:intron 40.0%
TTCTATAATGCAGATGGTCG+TGG - Chr3:90415506-90415525 None:intergenic 40.0%
TTTGAACTTGTCATCTCTGC+TGG + Chr3:90414236-90414255 MsG0380016993.01.T01:CDS 40.0%
! AGAGAGGTATGCACTAAGAA+TGG + Chr3:90413202-90413221 MsG0380016993.01.T01:CDS 40.0%
! ATGTGTATCCTTGCTCGTTT+TGG + Chr3:90413005-90413024 MsG0380016993.01.T01:intron 40.0%
! CACTATGCTTTTGTTCTCAG+TGG + Chr3:90412895-90412914 MsG0380016993.01.T01:intron 40.0%
! CGAAGACGTTCTTTTCAAAG+AGG + Chr3:90416177-90416196 MsG0380016993.01.T01:CDS 40.0%
! GAAGCTATAACTTGTACCAG+AGG - Chr3:90413694-90413713 None:intergenic 40.0%
! GAATTTTGCGGAGATTATGG+TGG - Chr3:90410197-90410216 None:intergenic 40.0%
! GACGTTCTTTTCAAAGAGGT+TGG + Chr3:90416181-90416200 MsG0380016993.01.T01:CDS 40.0%
! GAGAGGTATGCACTAAGAAT+GGG + Chr3:90413203-90413222 MsG0380016993.01.T01:CDS 40.0%
! GGAGAATTTTGCGGAGATTA+TGG - Chr3:90410200-90410219 None:intergenic 40.0%
! GGGGAAATTAGGATTGACTT+TGG + Chr3:90415936-90415955 MsG0380016993.01.T01:intron 40.0%
! TACCCTGTGTTTTACACAAG+AGG - Chr3:90415050-90415069 None:intergenic 40.0%
! TAGTGGGTCAGTTACACTAA+CGG + Chr3:90412704-90412723 MsG0380016993.01.T01:intron 40.0%
! TTACACAAGAGGCTATTTCC+AGG - Chr3:90415039-90415058 None:intergenic 40.0%
! TTCAGTTGAGATGGGTTTGA+GGG + Chr3:90414459-90414478 MsG0380016993.01.T01:CDS 40.0%
! TTTCAGTTGAGATGGGTTTG+AGG + Chr3:90414458-90414477 MsG0380016993.01.T01:CDS 40.0%
!! AGCGTTAAGTTGTCAGCTTT+TGG + Chr3:90415331-90415350 MsG0380016993.01.T01:intron 40.0%
!! AGCTTTATTTCATGGTGTGG+AGG + Chr3:90416572-90416591 MsG0380016993.01.T01:CDS 40.0%
!! ATGGTTTGTTTCGGAGTTAG+GGG + Chr3:90411379-90411398 MsG0380016993.01.T01:intron 40.0%
!! CGTGGTTAACTTATTTCTGG+AGG + Chr3:90416547-90416566 MsG0380016993.01.T01:CDS 40.0%
!! GAAAGTTTTTGGAGAAGAGG+TGG - Chr3:90410137-90410156 None:intergenic 40.0%
!! GAGAGCTTTATTTCATGGTG+TGG + Chr3:90416569-90416588 MsG0380016993.01.T01:CDS 40.0%
!! GATTTAGTTTGCGAGTTAGG+AGG - Chr3:90411710-90411729 None:intergenic 40.0%
!! TGGAGGAGAGCTTTATTTCA+TGG + Chr3:90416564-90416583 MsG0380016993.01.T01:CDS 40.0%
!! TTTAGTTTGCGAGTTAGGAG+GGG - Chr3:90411708-90411727 None:intergenic 40.0%
!! TTTTAGTTGTACCACGTACC+TGG + Chr3:90413656-90413675 MsG0380016993.01.T01:intron 40.0%
!!! ATCCTTGCTCGTTTTGGTTT+TGG + Chr3:90413011-90413030 MsG0380016993.01.T01:intron 40.0%
!!! CAGACCCTATTTTTATGCTC+AGG - Chr3:90412648-90412667 None:intergenic 40.0%
!!! GGTGGAAAGTTTTATTCCGT+TGG - Chr3:90410119-90410138 None:intergenic 40.0%
!!! TTGATTCGGCAGTCTGTTTT+AGG + Chr3:90414695-90414714 MsG0380016993.01.T01:CDS 40.0%
AACACGGAATGAAAGGGATG+AGG + Chr3:90413570-90413589 MsG0380016993.01.T01:CDS 45.0%
AAGTGGTCCTGAAGAGATGT+TGG + Chr3:90413928-90413947 MsG0380016993.01.T01:CDS 45.0%
ACTCTCTATGTTTCCTTCCC+CGG - Chr3:90414434-90414453 None:intergenic 45.0%
AGACCATCTCTTATCCGAAG+TGG - Chr3:90415760-90415779 None:intergenic 45.0%
AGAGAACATTATTGGAGGGG+AGG + Chr3:90411440-90411459 MsG0380016993.01.T01:intron 45.0%
AGAGGAAAAACGCCAAGAAG+TGG + Chr3:90412547-90412566 MsG0380016993.01.T01:CDS 45.0%
AGATCTATTCGGTCTCGCAA+CGG - Chr3:90410578-90410597 None:intergenic 45.0%
AGGCCATCTCTTATCAGATG+TGG - Chr3:90415557-90415576 None:intergenic 45.0%
ATAAATCGTGGATGGCCCAA+TGG - Chr3:90415689-90415708 None:intergenic 45.0%
ATAAATGATCTTGCCGGGGA+AGG + Chr3:90414418-90414437 MsG0380016993.01.T01:CDS 45.0%
ATACCAGCACACGATTCCAA+CGG + Chr3:90410100-90410119 MsG0380016993.01.T01:five_prime_UTR 45.0%
ATCATCGTCATCGTCGTCAA+CGG - Chr3:90410452-90410471 None:intergenic 45.0%
ATCTATATTCCACCTGCAGC+GGG + Chr3:90414810-90414829 MsG0380016993.01.T01:intron 45.0%
ATTGTTGGAGGATCAATCGG+AGG - Chr3:90411012-90411031 None:intergenic 45.0%
CAAAACTGGCATGTGAGATG+AGG - Chr3:90415810-90415829 None:intergenic 45.0%
CAAAGGAAAGGGACCAGAAA+TGG - Chr3:90411656-90411675 None:intergenic 45.0%
CAAATTTGGGCGTCTGTGTT+GGG - Chr3:90414678-90414697 None:intergenic 45.0%
CACTAACTTCGACAGAGTGA+TGG - Chr3:90411845-90411864 None:intergenic 45.0%
CAGAGGATATTGATCAGACC+AGG - Chr3:90413677-90413696 None:intergenic 45.0%
CAGATCCGACCAGCATATAA+GGG - Chr3:90413108-90413127 None:intergenic 45.0%
CATAGCAGGAACTGTACAGA+TGG + Chr3:90412745-90412764 MsG0380016993.01.T01:intron 45.0%
CCCAACCACGATTACTAAGA+TGG + Chr3:90415642-90415661 MsG0380016993.01.T01:intron 45.0%
CGATTGATCCTCCAACAATC+AGG + Chr3:90411013-90411032 MsG0380016993.01.T01:CDS 45.0%
CTACCTGAATTTCGACACGA+AGG - Chr3:90413606-90413625 None:intergenic 45.0%
CTAGGTTCACCCATATTGGA+GGG + Chr3:90411577-90411596 MsG0380016993.01.T01:intron 45.0%
CTGGTCTGATCAATATCCTC+TGG + Chr3:90413675-90413694 MsG0380016993.01.T01:intron 45.0%
CTTCGTGTCGAAATTCAGGT+AGG + Chr3:90413604-90413623 MsG0380016993.01.T01:intron 45.0%
GAAGTAGGAGATCACATAGC+AGG + Chr3:90412731-90412750 MsG0380016993.01.T01:intron 45.0%
GAATAGATCTCCTTCTCCTG+CGG + Chr3:90410588-90410607 MsG0380016993.01.T01:CDS 45.0%
GACCATCTCTTATCCGAAGT+GGG - Chr3:90415759-90415778 None:intergenic 45.0%
GAGGGATACCTCTGATTGTA+AGG + Chr3:90414559-90414578 MsG0380016993.01.T01:intron 45.0%
GCAACTGGAAACAGAGCTTT+AGG - Chr3:90413428-90413447 None:intergenic 45.0%
GCAATTCTCACATCACAAGC+CGG + Chr3:90415599-90415618 MsG0380016993.01.T01:intron 45.0%
GCAGGAGAAGGAGATCTATT+CGG - Chr3:90410589-90410608 None:intergenic 45.0%
GCGTGGATATAAATCGTGGA+TGG - Chr3:90415697-90415716 None:intergenic 45.0%
GCTACAAATATTTGCAGGCG+TGG + Chr3:90416529-90416548 MsG0380016993.01.T01:CDS 45.0%
GCTGCAGGTGGAATATAGAT+AGG - Chr3:90414810-90414829 None:intergenic 45.0%
TACGAGCTCCTTACAATCAG+AGG - Chr3:90414570-90414589 None:intergenic 45.0%
TACTCAGCTAAGACTAGCAG+AGG + Chr3:90412529-90412548 MsG0380016993.01.T01:intron 45.0%
TAGCAGGAACTGTACAGATG+GGG + Chr3:90412747-90412766 MsG0380016993.01.T01:intron 45.0%
TATATCCACGCTCCAGATGT+CGG + Chr3:90415706-90415725 MsG0380016993.01.T01:intron 45.0%
TATTGATCAGACCAGGTACG+TGG - Chr3:90413670-90413689 None:intergenic 45.0%
TCAAATTTGGGCGTCTGTGT+TGG - Chr3:90414679-90414698 None:intergenic 45.0%
TCAGATCCGACCAGCATATA+AGG - Chr3:90413109-90413128 None:intergenic 45.0%
TCAGTTCGTTCATCATCAGC+TGG + Chr3:90410895-90410914 MsG0380016993.01.T01:CDS 45.0%
TCATGTGACTGAAAGGTCAC+GGG + Chr3:90415006-90415025 MsG0380016993.01.T01:intron 45.0%
TCTAGGTTCACCCATATTGG+AGG + Chr3:90411576-90411595 MsG0380016993.01.T01:intron 45.0%
TGCCAAAACCAAAACGAGCA+AGG - Chr3:90413016-90413035 None:intergenic 45.0%
TGGAGCGTGGATATAAATCG+TGG - Chr3:90415701-90415720 None:intergenic 45.0%
TGTCATCTCTGCTGGACAAA+AGG + Chr3:90414244-90414263 MsG0380016993.01.T01:CDS 45.0%
TTCATCATCAGCTGGAAGAC+CGG + Chr3:90410903-90410922 MsG0380016993.01.T01:CDS 45.0%
TTCCACCAGACATCACTATC+AGG + Chr3:90412186-90412205 MsG0380016993.01.T01:CDS 45.0%
TTGGGCTAATGCAAGCACAA+CGG - Chr3:90414660-90414679 None:intergenic 45.0%
TTTAGCATCACCGGGTGATT+TGG - Chr3:90415292-90415311 None:intergenic 45.0%
! AAAAGGGGTCCCTCCATTTT+TGG - Chr3:90415090-90415109 None:intergenic 45.0%
! AAAATGGAGGGACCCCTTTT+CGG + Chr3:90415090-90415109 MsG0380016993.01.T01:intron 45.0%
! AAGCTTTATGTACGAGGCTC+TGG + Chr3:90416006-90416025 MsG0380016993.01.T01:intron 45.0%
! AGTTGCCTGATAGTGATGTC+TGG - Chr3:90412194-90412213 None:intergenic 45.0%
! ATCTCACATGCCAGTTTTGC+GGG + Chr3:90415811-90415830 MsG0380016993.01.T01:intron 45.0%
! CATCTCACATGCCAGTTTTG+CGG + Chr3:90415810-90415829 MsG0380016993.01.T01:intron 45.0%
! CGGGATAAGCTTTATGTACG+AGG + Chr3:90416000-90416019 MsG0380016993.01.T01:intron 45.0%
! GAGGGAACTTGCTTCTTTGA+AGG + Chr3:90414477-90414496 MsG0380016993.01.T01:CDS 45.0%
! TTTTGGCAGGTTGCTTCTCT+TGG + Chr3:90413028-90413047 MsG0380016993.01.T01:intron 45.0%
!! ACATCACAAGCCGGTTTTGT+GGG + Chr3:90415608-90415627 MsG0380016993.01.T01:intron 45.0%
!! GAAGGGACTTTAGAGGGTTT+TGG - Chr3:90411542-90411561 None:intergenic 45.0%
!! GACGTTTTGAGTGCGTTTGA+TGG - Chr3:90410380-90410399 None:intergenic 45.0%
!! GTTTTGAGTGCGTTTGATGG+TGG - Chr3:90410377-90410396 None:intergenic 45.0%
!!! TTGCTCGTTTTGGTTTTGGC+AGG + Chr3:90413015-90413034 MsG0380016993.01.T01:intron 45.0%
!!! AAATAAAATTCTTATTTTTT+AGG + Chr3:90414625-90414644 MsG0380016993.01.T01:intron 5.0%
!!! AATTTTATTTAAATATTGAT+AGG - Chr3:90414615-90414634 None:intergenic 5.0%
AAAACGGCGAGAATTACCGC+AGG - Chr3:90410607-90410626 None:intergenic 50.0%
AAACCCCTCATGCAAGGTGA+GGG + Chr3:90411622-90411641 MsG0380016993.01.T01:intron 50.0%
AAACTGCTGAGCAGGTAACC+TGG + Chr3:90413073-90413092 MsG0380016993.01.T01:intron 50.0%
AAGAAGTGGAGACCAGATCC+AGG + Chr3:90412561-90412580 MsG0380016993.01.T01:CDS 50.0%
AAGAGCCTTTGCTACGGCTT+CGG - Chr3:90413779-90413798 None:intergenic 50.0%
AGAAGTGGAGACCAGATCCA+GGG + Chr3:90412562-90412581 MsG0380016993.01.T01:CDS 50.0%
AGCCCTTCGTGTCGAAATTC+AGG + Chr3:90413600-90413619 MsG0380016993.01.T01:CDS 50.0%
AGGTTACCTGCTCAGCAGTT+TGG - Chr3:90413074-90413093 None:intergenic 50.0%
ATAGTCCCTCACCTTGCATG+AGG - Chr3:90411630-90411649 None:intergenic 50.0%
ATCCACCATACGAACGCCTA+TGG + Chr3:90410981-90411000 MsG0380016993.01.T01:CDS 50.0%
ATCCAGGGAACTCGAGAAAC+AGG + Chr3:90412577-90412596 MsG0380016993.01.T01:CDS 50.0%
ATTCCGTTGGAATCGTGTGC+TGG - Chr3:90410106-90410125 None:intergenic 50.0%
CAGGTTGCTTCTCTTGGAGA+AGG + Chr3:90413034-90413053 MsG0380016993.01.T01:intron 50.0%
CTCTGCTGGACAAAAGGCTA+AGG + Chr3:90414250-90414269 MsG0380016993.01.T01:CDS 50.0%
CTTACACAACCCCGCAAAAC+TGG - Chr3:90415824-90415843 None:intergenic 50.0%
GAAGAAAGAGCAGAAGGAGG+CGG - Chr3:90410502-90410521 None:intergenic 50.0%
GAGCAAGCCAACATCTCTTC+AGG - Chr3:90413938-90413957 None:intergenic 50.0%
GAGGGACTATCACCCATTTC+TGG + Chr3:90411640-90411659 MsG0380016993.01.T01:intron 50.0%
GGGGGTAAGGACAAAGGAAA+GGG - Chr3:90411667-90411686 None:intergenic 50.0%
GTAAGAATTGTACCCGCTGC+AGG - Chr3:90414825-90414844 None:intergenic 50.0%
GTCCCACTTCGGATAAGAGA+TGG + Chr3:90415754-90415773 MsG0380016993.01.T01:intron 50.0%
TAAACCCCTCATGCAAGGTG+AGG + Chr3:90411621-90411640 MsG0380016993.01.T01:intron 50.0%
TAGTCCCTCACCTTGCATGA+GGG - Chr3:90411629-90411648 None:intergenic 50.0%
TCAATTGCATGCACGTGCAG+AGG - Chr3:90412005-90412024 None:intergenic 50.0%
TGCATACGCAGGTCCGAAAA+GGG - Chr3:90415106-90415125 None:intergenic 50.0%
TGCTGGACAAAAGGCTAAGG+AGG + Chr3:90414253-90414272 MsG0380016993.01.T01:CDS 50.0%
TGGATCTGGTCTCCACTTCT+TGG - Chr3:90412562-90412581 None:intergenic 50.0%
TTCGGTCTCGCAACGGAAAT+CGG - Chr3:90410571-90410590 None:intergenic 50.0%
TTCTCCGGTCCATGATTGTG+AGG - Chr3:90410231-90410250 None:intergenic 50.0%
TTTCGGAGTTAGGGGAGAGA+AGG + Chr3:90411387-90411406 MsG0380016993.01.T01:intron 50.0%
TTTCTCGAGTTCCCTGGATC+TGG - Chr3:90412576-90412595 None:intergenic 50.0%
TTTGTCACAGGCTGCTCTCA+TGG + Chr3:90413537-90413556 MsG0380016993.01.T01:CDS 50.0%
! AGCTGCTTTGCGTCAAAGAG+AGG + Chr3:90413186-90413205 MsG0380016993.01.T01:CDS 50.0%
! CAGAAGACAGGCTTCGGTTT+TGG + Chr3:90416604-90416623 MsG0380016993.01.T01:CDS 50.0%
! CTGCTGCAGCGTCATCTTTT+AGG - Chr3:90413735-90413754 None:intergenic 50.0%
! GGAATCGTGTGCTGGTATGT+AGG - Chr3:90410098-90410117 None:intergenic 50.0%
! TCGACAGAGTGATGGAGTGA+TGG - Chr3:90411837-90411856 None:intergenic 50.0%
! TCTCACATGCCAGTTTTGCG+GGG + Chr3:90415812-90415831 MsG0380016993.01.T01:intron 50.0%
! TCTTGGAGAAGGTGTATCCC+TGG + Chr3:90413045-90413064 MsG0380016993.01.T01:CDS 50.0%
! TGCCTGATAGTGATGTCTGG+TGG - Chr3:90412191-90412210 None:intergenic 50.0%
! TTTGTCGGCGATTTTGCAGC+TGG + Chr3:90413379-90413398 MsG0380016993.01.T01:intron 50.0%
!! AAGTTGGTGACTGTCCACTG+CGG - Chr3:90416635-90416654 None:intergenic 50.0%
!! ATGTTGGCTTGCTCGCTACT+GGG + Chr3:90413944-90413963 MsG0380016993.01.T01:CDS 50.0%
!! CACATCACAAGCCGGTTTTG+TGG + Chr3:90415607-90415626 MsG0380016993.01.T01:intron 50.0%
!! CAGCTTGGACTAGGTACTGA+TGG + Chr3:90414367-90414386 MsG0380016993.01.T01:intron 50.0%
!! GGCGTTCGTATGGTGGATTT+CGG - Chr3:90410979-90410998 None:intergenic 50.0%
!! GTTCGTATGGTGGATTTCGG+AGG - Chr3:90410976-90410995 None:intergenic 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr3:90415018-90415037 MsG0380016993.01.T01:intron 55.0%
AGAAGCCGAAGCCGTAGCAA+AGG + Chr3:90413771-90413790 MsG0380016993.01.T01:CDS 55.0%
AGAATTGTACCCGCTGCAGG+TGG - Chr3:90414822-90414841 None:intergenic 55.0%
AGCGGCAATTCAAGCAGCAC+CGG + Chr3:90410283-90410302 MsG0380016993.01.T01:CDS 55.0%
AGTCCCTCACCTTGCATGAG+GGG - Chr3:90411628-90411647 None:intergenic 55.0%
AGTTTGCGAGTTAGGAGGGG+AGG - Chr3:90411705-90411724 None:intergenic 55.0%
ATCATCAGCTGGAAGACCGG+CGG + Chr3:90410906-90410925 MsG0380016993.01.T01:CDS 55.0%
CACCATACGAACGCCTATGG+CGG + Chr3:90410984-90411003 MsG0380016993.01.T01:CDS 55.0%
CCTTTGTCCTTACCCCCCAA+AGG + Chr3:90411670-90411689 MsG0380016993.01.T01:intron 55.0%
CTGCAGCAGCAGAGGAACAA+CGG + Chr3:90413746-90413765 MsG0380016993.01.T01:CDS 55.0%
CTGCATACGCAGGTCCGAAA+AGG - Chr3:90415107-90415126 None:intergenic 55.0%
CTGGACTCTCGGTTCTTCTC+CGG - Chr3:90410246-90410265 None:intergenic 55.0%
GCATACGCAGGTCCGAAAAG+GGG - Chr3:90415105-90415124 None:intergenic 55.0%
GCGAGAATTACCGCAGGAGA+AGG - Chr3:90410601-90410620 None:intergenic 55.0%
GGGGGGTAAGGACAAAGGAA+AGG - Chr3:90411668-90411687 None:intergenic 55.0%
GTACAGATGGGGTCACATGC+TGG + Chr3:90412758-90412777 MsG0380016993.01.T01:intron 55.0%
GTCTCGCAACGGAAATCGGA+GGG - Chr3:90410567-90410586 None:intergenic 55.0%
GTTTGCGAGTTAGGAGGGGA+GGG - Chr3:90411704-90411723 None:intergenic 55.0%
TACCGCCATAGGCGTTCGTA+TGG - Chr3:90410989-90411008 None:intergenic 55.0%
TGGAAGCCAAACTGCTGAGC+AGG + Chr3:90413065-90413084 MsG0380016993.01.T01:CDS 55.0%
! ATGTACGAGGCTCTGGCTAC+CGG + Chr3:90416013-90416032 MsG0380016993.01.T01:intron 55.0%
! CACCTGTTTCTCGAGTTCCC+TGG - Chr3:90412582-90412601 None:intergenic 55.0%
! CCTTTGGGGGGTAAGGACAA+AGG - Chr3:90411673-90411692 None:intergenic 55.0%
! CTTTTCGGACCTGCGTATGC+AGG + Chr3:90415105-90415124 MsG0380016993.01.T01:intron 55.0%
! GCTCAGCAGTTTGGCTTCCA+GGG - Chr3:90413065-90413084 None:intergenic 55.0%
! TGCTCAGCAGTTTGGCTTCC+AGG - Chr3:90413066-90413085 None:intergenic 55.0%
!! AAGGAGGCGGAGCACTGTAA+CGG - Chr3:90410489-90410508 None:intergenic 55.0%
!! AGTTGGTGACTGTCCACTGC+GGG - Chr3:90416634-90416653 None:intergenic 55.0%
!! CGTATGGTGGATTTCGGAGG+CGG - Chr3:90410973-90410992 None:intergenic 55.0%
!! GATGTTGGCTTGCTCGCTAC+TGG + Chr3:90413943-90413962 MsG0380016993.01.T01:CDS 55.0%
!! GCGTTTGATGGTGGAGAGAC+CGG - Chr3:90410368-90410387 None:intergenic 55.0%
!! TCAATCGGAGGTACCGCCAT+AGG - Chr3:90411000-90411019 None:intergenic 55.0%
!! TGTTGGCTTGCTCGCTACTG+GGG + Chr3:90413945-90413964 MsG0380016993.01.T01:CDS 55.0%
!! TTTGATGGTGGAGAGACCGG+TGG - Chr3:90410365-90410384 None:intergenic 55.0%
ACAGCGTCTCGCTCGTGTCA+TGG + Chr3:90410417-90410436 MsG0380016993.01.T01:CDS 60.0%
AGATGACGCTGCAGCAGCAG+AGG + Chr3:90413738-90413757 MsG0380016993.01.T01:CDS 60.0%
AGCCGTGATTGAGGATGCGC+CGG - Chr3:90410331-90410350 None:intergenic 60.0%
AGCTGGAAGACCGGCGGTTT+CGG + Chr3:90410912-90410931 MsG0380016993.01.T01:CDS 60.0%
ATCATCGCCGGTGATGTCGC+CGG + Chr3:90410309-90410328 MsG0380016993.01.T01:CDS 60.0%
CATCACCGGCGATGATGAGC+CGG - Chr3:90410305-90410324 None:intergenic 60.0%
CCGAGAGTCCAGTCTACACG+CGG + Chr3:90410254-90410273 MsG0380016993.01.T01:CDS 60.0%
CCGCGTGTAGACTGGACTCT+CGG - Chr3:90410257-90410276 None:intergenic 60.0%
CGCAACGGAAATCGGAGGGA+TGG - Chr3:90410563-90410582 None:intergenic 60.0%
CGCCATAGGCGTTCGTATGG+TGG - Chr3:90410986-90411005 None:intergenic 60.0%
GCGCATCCTCAATCACGGCT+CGG + Chr3:90410331-90410350 MsG0380016993.01.T01:CDS 60.0%
GCTGATCGAACCGAAACCGC+CGG - Chr3:90410925-90410944 None:intergenic 60.0%
GGTCTCGCAACGGAAATCGG+AGG - Chr3:90410568-90410587 None:intergenic 60.0%
GTAGGACCGAGCCGTGATTG+AGG - Chr3:90410340-90410359 None:intergenic 60.0%
GTGGAGAGACCGGTGGAAGT+AGG - Chr3:90410358-90410377 None:intergenic 60.0%
TATGCAGGAGCCCTGAGCAC+CGG + Chr3:90415120-90415139 MsG0380016993.01.T01:intron 60.0%
! GCGCTGATCTCCCGTGTCTT+TGG - Chr3:90412222-90412241 None:intergenic 60.0%
!!! CGGTTTTGGATTGCCCGCAG+TGG + Chr3:90416618-90416637 MsG0380016993.01.T01:CDS 60.0%
ACAAGGGAAGCCCGGTGCTC+AGG - Chr3:90415134-90415153 None:intergenic 65.0%
ACGCTCCAGATGTCGGCGTG+AGG + Chr3:90415713-90415732 MsG0380016993.01.T01:intron 65.0%
AGCAGCAGCAGCAGCACCAG+TGG + Chr3:90410945-90410964 MsG0380016993.01.T01:CDS 65.0%
AGGGAAGGCAGGCCTTTGGG+GGG - Chr3:90411685-90411704 None:intergenic 65.0%
ATGCAGGAGCCCTGAGCACC+GGG + Chr3:90415121-90415140 MsG0380016993.01.T01:intron 65.0%
CAAGGGAAGCCCGGTGCTCA+GGG - Chr3:90415133-90415152 None:intergenic 65.0%
CACACCCTCACGCCGACATC+TGG - Chr3:90415721-90415740 None:intergenic 65.0%
CGCCGGCGCATCCTCAATCA+CGG + Chr3:90410326-90410345 MsG0380016993.01.T01:CDS 65.0%
CGCTCCAGATGTCGGCGTGA+GGG + Chr3:90415714-90415733 MsG0380016993.01.T01:intron 65.0%
CTCAGGGCTCCTGCATACGC+AGG - Chr3:90415117-90415136 None:intergenic 65.0%
CTCCACTGCCGCGTGTAGAC+TGG - Chr3:90410265-90410284 None:intergenic 65.0%
GACACGAGCGAGACGCTGTG+CGG - Chr3:90410416-90410435 None:intergenic 65.0%
GAGGGAAGGCAGGCCTTTGG+GGG - Chr3:90411686-90411705 None:intergenic 65.0%
GATTTCGGAGGCGGCACCAC+TGG - Chr3:90410964-90410983 None:intergenic 65.0%
GCGAGTTAGGAGGGGAGGGA+AGG - Chr3:90411700-90411719 None:intergenic 65.0%
GGAGGGAAGGCAGGCCTTTG+GGG - Chr3:90411687-90411706 None:intergenic 65.0%
GGGAGGGAAGGCAGGCCTTT+GGG - Chr3:90411688-90411707 None:intergenic 65.0%
GTCCAGTCTACACGCGGCAG+TGG + Chr3:90410260-90410279 MsG0380016993.01.T01:CDS 65.0%
GTCTACACGCGGCAGTGGAG+CGG + Chr3:90410265-90410284 MsG0380016993.01.T01:CDS 65.0%
GTTAGGAGGGGAGGGAAGGC+AGG - Chr3:90411696-90411715 None:intergenic 65.0%
! ACGCTGTGCGGCGGCTTTAG+CGG - Chr3:90410404-90410423 None:intergenic 65.0%
! AGGCAGGCCTTTGGGGGGTA+AGG - Chr3:90411680-90411699 None:intergenic 65.0%
! TCACGCCGACATCTGGAGCG+TGG - Chr3:90415714-90415733 None:intergenic 65.0%
!! CAGCACCGGCTCATCATCGC+CGG + Chr3:90410297-90410316 MsG0380016993.01.T01:CDS 65.0%
!! CGGCTCGGTCCTACTTCCAC+CGG + Chr3:90410346-90410365 MsG0380016993.01.T01:CDS 65.0%
ACGAGCGAGACGCTGTGCGG+CGG - Chr3:90410413-90410432 None:intergenic 70.0%
GGGGAGGGAAGGCAGGCCTT+TGG - Chr3:90411689-90411708 None:intergenic 70.0%
! GGATGCGCCGGCGACATCAC+CGG - Chr3:90410319-90410338 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 90410071 90416713 90410071 ID=MsG0380016993.01;Name=MsG0380016993.01
Chr3 mRNA 90410071 90416713 90410071 ID=MsG0380016993.01.T01;Parent=MsG0380016993.01;Name=MsG0380016993.01.T01;_AED=0.37;_eAED=0.46;_QI=167|0.75|0.70|1|0.87|0.82|17|0|637
Chr3 exon 90410071 90410609 90410071 ID=MsG0380016993.01.T01:exon:25158;Parent=MsG0380016993.01.T01
Chr3 exon 90410865 90411049 90410865 ID=MsG0380016993.01.T01:exon:25159;Parent=MsG0380016993.01.T01
Chr3 exon 90412184 90412265 90412184 ID=MsG0380016993.01.T01:exon:25160;Parent=MsG0380016993.01.T01
Chr3 exon 90412414 90412455 90412414 ID=MsG0380016993.01.T01:exon:25161;Parent=MsG0380016993.01.T01
Chr3 exon 90412536 90412598 90412536 ID=MsG0380016993.01.T01:exon:25162;Parent=MsG0380016993.01.T01
Chr3 exon 90413037 90413086 90413037 ID=MsG0380016993.01.T01:exon:25163;Parent=MsG0380016993.01.T01
Chr3 exon 90413180 90413224 90413180 ID=MsG0380016993.01.T01:exon:25164;Parent=MsG0380016993.01.T01
Chr3 exon 90413513 90413621 90413513 ID=MsG0380016993.01.T01:exon:25165;Parent=MsG0380016993.01.T01
Chr3 exon 90413730 90413840 90413730 ID=MsG0380016993.01.T01:exon:25166;Parent=MsG0380016993.01.T01
Chr3 exon 90413924 90413984 90413924 ID=MsG0380016993.01.T01:exon:25167;Parent=MsG0380016993.01.T01
Chr3 exon 90414174 90414290 90414174 ID=MsG0380016993.01.T01:exon:25168;Parent=MsG0380016993.01.T01
Chr3 exon 90414380 90414498 90414380 ID=MsG0380016993.01.T01:exon:25169;Parent=MsG0380016993.01.T01
Chr3 exon 90414647 90414716 90414647 ID=MsG0380016993.01.T01:exon:25170;Parent=MsG0380016993.01.T01
Chr3 exon 90415286 90415327 90415286 ID=MsG0380016993.01.T01:exon:25171;Parent=MsG0380016993.01.T01
Chr3 exon 90415396 90415497 90415396 ID=MsG0380016993.01.T01:exon:25172;Parent=MsG0380016993.01.T01
Chr3 exon 90416158 90416275 90416158 ID=MsG0380016993.01.T01:exon:25173;Parent=MsG0380016993.01.T01
Chr3 exon 90416488 90416713 90416488 ID=MsG0380016993.01.T01:exon:25174;Parent=MsG0380016993.01.T01
Chr3 five_prime_UTR 90410071 90410237 90410071 ID=MsG0380016993.01.T01:five_prime_utr;Parent=MsG0380016993.01.T01
Chr3 CDS 90410238 90410609 90410238 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90410865 90411049 90410865 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90412184 90412265 90412184 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90412414 90412455 90412414 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90412536 90412598 90412536 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90413037 90413086 90413037 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90413180 90413224 90413180 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90413513 90413621 90413513 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90413730 90413840 90413730 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90413924 90413984 90413924 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90414174 90414290 90414174 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90414380 90414498 90414380 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90414647 90414716 90414647 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90415286 90415327 90415286 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90415396 90415497 90415396 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90416158 90416275 90416158 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Chr3 CDS 90416488 90416713 90416488 ID=MsG0380016993.01.T01:cds;Parent=MsG0380016993.01.T01
Gene Sequence

>MsG0380016993.01.T01

ATGGACCGGAGAAGAACCGAGAGTCCAGTCTACACGCGGCAGTGGAGCGGCAATTCAAGCAGCACCGGCTCATCATCGCCGGTGATGTCGCCGGCGCATCCTCAATCACGGCTCGGTCCTACTTCCACCGGTCTCTCCACCATCAAACGCACTCAAAACGTCGCCGCTAAAGCCGCCGCACAGCGTCTCGCTCGTGTCATGGCGTCTCAAACCGTTGACGACGATGACGATGATGACGATCTCGATTTCCGTTACAGTGCTCCGCCTCCTTCTGCTCTTTCTTCTTTCTCCAGTAACAGAAATTCTAGTGCTAATGCTAACTCCATCCCTCCGATTTCCGTTGCGAGACCGAATAGATCTCCTTCTCCTGCGTTAGGTCGGAACTTTGTAGAGCATACTCAATCAGTTCGTTCATCATCAGCTGGAAGACCGGCGGTTTCGGTTCGATCAGCAGCAGCAGCAGCAGCACCAGTGGTGCCGCCTCCGAAATCCACCATACGAACGCCTATGGCGGTACCTCCGATTGATCCTCCAACAATCAGGAATAAAGAGAAGAGGTTTCCACCAGACATCACTATCAGGCAACTTAACTCCAAAGACACGGGAGATCAGCGCGAAGCTTCTGCGCTCCGTGATGAACTTGATATGCTACAAGAAGAGAACGATGCTTTATTAGAAAAGCTAAGACTAGCAGAGGAAAAACGCCAAGAAGTGGAGACCAGATCCAGGGAACTCGAGAAACAGGTTGCTTCTCTTGGAGAAGGTGTATCCCTGGAAGCCAAACTGCTGAGCAGGAAAGAAGCTGCTTTGCGTCAAAGAGAGGTATGCACTAAGAATGGAATATCCTTGGAGTACTCAATATTTTTGTCACAGGCTGCTCTCATGGCTGCAAAACAAACACGGAATGAAAGGGATGAGGATCTCACAGCCCTTCGTGTCGAAATTCAGAACCTAAAAGATGACGCTGCAGCAGCAGAGGAACAACGGCAAGAAGCCGAAGCCGTAGCAAAGGCTCTTCAATCAATGACACAGAGAATGATTTTGACCCAAGAAGAAATGGAGGAAGTGGTCCTGAAGAGATGTTGGCTTGCTCGCTACTGGGGTCTTTCTGTAAAACATGGCATATGTGCAGATATAGCACAGTCCAAGTATGAACATTGGTCTTCTTTAGCTCCTCTTCCTTTTGAACTTGTCATCTCTGCTGGACAAAAGGCTAAGGAGGAATCTTGGAACAAAAGTACTGATGGTTCAGATAGAAGCCAAACTGTTCGTGATATAAATGATCTTGCCGGGGAAGGAAACATAGAGAGTATGCTTTCAGTTGAGATGGGTTTGAGGGAACTTGCTTCTTTGAAGGTTGAGGATGCCGTTGTGCTTGCATTAGCCCAACACAGACGCCCAAATTTGATTCGGCAGTCTGTTTTAGATTCCAAATCACCCGGTGATGCTAAATATTTGGAAGCATTTGTATTGGATGAGATTTATGCTTTTATTGTGTTTAATTTGGTGTGCTTTAGTGGTGTTAAATTTGAAGATATAAAAACCCTTGTGAAATGTTACAAGTGTCTAGAATTAAGTGAAGAGGAAGCCGAAGACGTTCTTTTCAAAGAGGTTGGTTGCTTCTTCTTTGAAGATTCTGAAACTTTGTACGATGCAATCTATGAAATTGTAATACCTGTCCTTAAAATTGGACGCTCCTATAATCATGTTTTGGATGACCAATTTATAAGCTACAAATATTTGCAGGCGTGGTTAACTTATTTCTGGAGGAGAGCTTTATTTCATGGTGTGGAGGAAGATATTGCAGAAGACAGGCTTCGGTTTTGGATTGCCCGCAGTGGACAGTCACCAACTTCACATGATGCTGTTGATGGTAAGCTCATAATTCTTATTATCTTATTTCTGGTTCCGTAG
Protein sequence

>MsG0380016993.01.T01

MDRRRTESPVYTRQWSGNSSSTGSSSPVMSPAHPQSRLGPTSTGLSTIKRTQNVAAKAAAQRLARVMASQTVDDDDDDDDLDFRYSAPPPSALSSFSSNRNSSANANSIPPISVARPNRSPSPALGRNFVEHTQSVRSSSAGRPAVSVRSAAAAAAPVVPPPKSTIRTPMAVPPIDPPTIRNKEKRFPPDITIRQLNSKDTGDQREASALRDELDMLQEENDALLEKLRLAEEKRQEVETRSRELEKQVASLGEGVSLEAKLLSRKEAALRQREVCTKNGISLEYSIFLSQAALMAAKQTRNERDEDLTALRVEIQNLKDDAAAAEEQRQEAEAVAKALQSMTQRMILTQEEMEEVVLKRCWLARYWGLSVKHGICADIAQSKYEHWSSLAPLPFELVISAGQKAKEESWNKSTDGSDRSQTVRDINDLAGEGNIESMLSVEMGLRELASLKVEDAVVLALAQHRRPNLIRQSVLDSKSPGDAKYLEAFVLDEIYAFIVFNLVCFSGVKFEDIKTLVKCYKCLELSEEEAEDVLFKEVGCFFFEDSETLYDAIYEIVIPVLKIGRSYNHVLDDQFISYKYLQAWLTYFWRRALFHGVEEDIAEDRLRFWIARSGQSPTSHDAVDGKLIILIILFLVP*