Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011188.01.T01 | KEH23365.1 | 97.674 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 1.01E-118 | 351 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011188.01.T01 | Q0WMJ8 | 65.06 | 166 | 57 | 1 | 8 | 172 | 12 | 177 | 3.18E-74 | 234 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011188.01.T01 | A0A072UC15 | 97.674 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 4.84e-119 | 351 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000172.01 | MsG0280011188.01 | 0.823988 | 1.029410e-53 | 9.002168e-51 |
MsG0180003411.01 | MsG0280011188.01 | 0.860486 | 1.997293e-63 | 5.468688e-60 |
MsG0180003731.01 | MsG0280011188.01 | 0.810044 | 1.401959e-50 | 8.364274e-48 |
MsG0180004752.01 | MsG0280011188.01 | 0.823016 | 1.737757e-53 | 1.478632e-50 |
MsG0180005873.01 | MsG0280011188.01 | 0.859174 | 4.964377e-63 | 1.299215e-59 |
MsG0280011188.01 | MsG0380015495.01 | 0.817410 | 3.345415e-52 | 2.434518e-49 |
MsG0280011188.01 | MsG0380016386.01 | 0.811565 | 6.569648e-51 | 4.080315e-48 |
MsG0280011188.01 | MsG0380016927.01 | 0.805468 | 1.315648e-49 | 6.965883e-47 |
MsG0280011188.01 | MsG0380017228.01 | 0.804049 | 2.603144e-49 | 1.328873e-46 |
MsG0280011188.01 | MsG0380017419.01 | 0.838886 | 2.202291e-57 | 2.990290e-54 |
MsG0280011188.01 | MsG0380017946.01 | 0.814718 | 1.336080e-51 | 9.032935e-49 |
MsG0280011188.01 | MsG0480018125.01 | 0.853830 | 1.843553e-61 | 4.035944e-58 |
MsG0280011188.01 | MsG0480018496.01 | 0.811439 | 6.996914e-51 | 4.331427e-48 |
MsG0280011188.01 | MsG0480019395.01 | 0.823322 | 1.474217e-53 | 1.265138e-50 |
MsG0280011188.01 | MsG0480020047.01 | 0.823386 | 1.424140e-53 | 1.224301e-50 |
MsG0280011188.01 | MsG0480021238.01 | 0.802306 | 5.973772e-49 | 2.916575e-46 |
MsG0280011188.01 | MsG0480022812.01 | 0.824330 | 8.559146e-54 | 7.557437e-51 |
MsG0280011188.01 | MsG0580024871.01 | 0.813414 | 2.590887e-51 | 1.690904e-48 |
MsG0280011188.01 | MsG0580025898.01 | 0.800869 | 1.176890e-48 | 5.540355e-46 |
MsG0280011188.01 | MsG0580026160.01 | 0.827991 | 1.152177e-54 | 1.130440e-51 |
MsG0280011188.01 | MsG0680030545.01 | 0.811147 | 8.098236e-51 | 4.974437e-48 |
MsG0280011188.01 | MsG0780036843.01 | 0.828203 | 1.024612e-54 | 1.011481e-51 |
MsG0280011188.01 | MsG0780039702.01 | 0.878533 | 2.600603e-69 | 1.362759e-65 |
MsG0280011188.01 | MsG0780040481.01 | 0.841534 | 4.483317e-58 | 6.607316e-55 |
MsG0280011188.01 | MsG0780040827.01 | 0.843363 | 1.467664e-58 | 2.290985e-55 |
MsG0280011188.01 | MsG0880046832.01 | 0.811063 | 8.445081e-51 | 5.176121e-48 |
MsG0280011188.01 | MsG0880047233.01 | 0.839957 | 1.161063e-57 | 1.629475e-54 |
MsG0280007052.01 | MsG0280011188.01 | 0.809974 | 1.450951e-50 | 8.640619e-48 |
MsG0280007427.01 | MsG0280011188.01 | 0.806091 | 9.732579e-50 | 5.236098e-47 |
MsG0280008523.01 | MsG0280011188.01 | 0.814505 | 1.489192e-51 | 1.001101e-48 |
MsG0280009932.01 | MsG0280011188.01 | 0.813738 | 2.198798e-51 | 1.447662e-48 |
MsG0280010173.01 | MsG0280011188.01 | 0.808396 | 3.161172e-50 | 1.805555e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011188.01.T01 | MTR_7g077800 | 97.674 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 1.23e-122 | 351 |
MsG0280011188.01.T01 | MTR_7g077800 | 97.674 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 2.54e-121 | 350 |
MsG0280011188.01.T01 | MTR_7g077800 | 97.674 | 172 | 4 | 0 | 1 | 172 | 1 | 172 | 4.44e-120 | 350 |
MsG0280011188.01.T01 | MTR_8g030680 | 77.844 | 167 | 31 | 2 | 7 | 172 | 15 | 176 | 5.33e-90 | 273 |
MsG0280011188.01.T01 | MTR_6g463340 | 61.688 | 154 | 57 | 2 | 21 | 173 | 27 | 179 | 7.45e-61 | 197 |
MsG0280011188.01.T01 | MTR_8g030680 | 81.111 | 90 | 16 | 1 | 84 | 172 | 1 | 90 | 9.54e-44 | 150 |
MsG0280011188.01.T01 | MTR_7g405780 | 44.056 | 143 | 80 | 0 | 22 | 164 | 30 | 172 | 1.37e-32 | 121 |
MsG0280011188.01.T01 | MTR_7g405780 | 44.056 | 143 | 80 | 0 | 22 | 164 | 30 | 172 | 1.54e-32 | 120 |
MsG0280011188.01.T01 | MTR_7g405780 | 44.056 | 143 | 80 | 0 | 22 | 164 | 30 | 172 | 2.91e-32 | 120 |
MsG0280011188.01.T01 | MTR_7g405780 | 44.056 | 143 | 80 | 0 | 22 | 164 | 30 | 172 | 3.83e-32 | 120 |
MsG0280011188.01.T01 | MTR_6g463340 | 60.563 | 71 | 27 | 1 | 104 | 173 | 1 | 71 | 2.42e-20 | 87.4 |
MsG0280011188.01.T01 | MTR_1g116953 | 32.353 | 136 | 88 | 2 | 37 | 170 | 30 | 163 | 7.01e-16 | 74.7 |
MsG0280011188.01.T01 | MTR_7g077800 | 91.176 | 34 | 3 | 0 | 139 | 172 | 1 | 34 | 2.92e-13 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280011188.01.T01 | AT1G01650 | 65.060 | 166 | 57 | 1 | 8 | 172 | 12 | 177 | 3.24e-75 | 234 |
MsG0280011188.01.T01 | AT1G63690 | 64.474 | 152 | 53 | 1 | 22 | 172 | 27 | 178 | 4.12e-63 | 203 |
MsG0280011188.01.T01 | AT1G63690 | 64.474 | 152 | 53 | 1 | 22 | 172 | 27 | 178 | 4.30e-63 | 203 |
MsG0280011188.01.T01 | AT2G43070 | 40.260 | 154 | 90 | 2 | 22 | 173 | 28 | 181 | 6.51e-28 | 108 |
MsG0280011188.01.T01 | AT2G43070 | 40.260 | 154 | 90 | 2 | 22 | 173 | 28 | 181 | 7.09e-28 | 108 |
MsG0280011188.01.T01 | AT2G43070 | 40.260 | 154 | 90 | 2 | 22 | 173 | 87 | 240 | 1.05e-27 | 108 |
MsG0280011188.01.T01 | AT2G43070 | 40.260 | 154 | 90 | 2 | 22 | 173 | 87 | 240 | 1.13e-27 | 108 |
MsG0280011188.01.T01 | AT1G05820 | 43.151 | 146 | 79 | 4 | 29 | 171 | 31 | 175 | 4.61e-25 | 100 |
MsG0280011188.01.T01 | AT1G05820 | 43.151 | 146 | 79 | 4 | 29 | 171 | 31 | 175 | 1.47e-24 | 99.8 |
MsG0280011188.01.T01 | AT1G05820 | 41.379 | 145 | 83 | 2 | 29 | 171 | 31 | 175 | 2.08e-24 | 99.4 |
Find 38 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTTCTCTGTGTTCA+TGG | 0.169898 | 2:+80756936 | MsG0280011188.01.T01:CDS |
TCCACACCATCAATTGAAAT+TGG | 0.185349 | 2:-80758628 | None:intergenic |
AATGAAACCGATATTGATAT+TGG | 0.297635 | 2:+80759284 | MsG0280011188.01.T01:CDS |
AAAGTTCCAATTTCAATTGA+TGG | 0.322977 | 2:+80758622 | MsG0280011188.01.T01:CDS |
TTGTCACATCCAGGTTTCTT+AGG | 0.323154 | 2:-80757012 | None:intergenic |
AACTAGAATACCTTATTCTT+AGG | 0.323199 | 2:-80758766 | None:intergenic |
CTTTAGCGTTATTTATAATC+AGG | 0.343087 | 2:-80759016 | None:intergenic |
GCTCACGGGCGAGATCATTT+TGG | 0.348166 | 2:+80758926 | MsG0280011188.01.T01:intron |
TTGTAGCAAACCTAAGAATA+AGG | 0.355750 | 2:+80758756 | MsG0280011188.01.T01:CDS |
GTCGGTGTTGGTGCAAGATT+TGG | 0.369570 | 2:+80758664 | MsG0280011188.01.T01:CDS |
CGGCAATGGCAACTCTAGTA+TGG | 0.378558 | 2:-80758720 | None:intergenic |
TTCTTCAGCTATATTTGCCT+TGG | 0.386977 | 2:-80758976 | None:intergenic |
AGGTATTCCAATATCAATAT+CGG | 0.409099 | 2:-80759291 | None:intergenic |
ATGTGACAACAACTTTGTTC+TGG | 0.416582 | 2:+80757026 | MsG0280011188.01.T01:CDS |
TCCAATTTCAATTGATGGTG+TGG | 0.445372 | 2:+80758627 | MsG0280011188.01.T01:CDS |
ACAAAGTTGTTGTCACATCC+AGG | 0.490168 | 2:-80757021 | None:intergenic |
TTAGGTTTGCTACAACAGTC+AGG | 0.492193 | 2:-80758748 | None:intergenic |
TGCAAGATTTGGACCTACAT+TGG | 0.494196 | 2:+80758675 | MsG0280011188.01.T01:CDS |
AACACAGAGAAGAAGAAGAT+AGG | 0.498115 | 2:-80756931 | None:intergenic |
ACCTGCTGTCATGCTTCCAC+TGG | 0.500327 | 2:+80759310 | MsG0280011188.01.T01:CDS |
AAGAAGATAGGTGTAAAAGA+AGG | 0.514055 | 2:-80756919 | None:intergenic |
CTGATTATAAATAACGCTAA+AGG | 0.517532 | 2:+80759017 | MsG0280011188.01.T01:CDS |
GTCATGCTTCCACTGGATGC+CGG | 0.519867 | 2:+80759317 | MsG0280011188.01.T01:CDS |
GCAAATATAGCTGAAGAAGC+TGG | 0.537504 | 2:+80758981 | MsG0280011188.01.T01:CDS |
AGTATTGCTCCTAAGAAACC+TGG | 0.554160 | 2:+80757003 | MsG0280011188.01.T01:CDS |
AGCGTTATTTATAATCAGGA+TGG | 0.554823 | 2:-80759012 | None:intergenic |
TCCAGTGGAAGCATGACAGC+AGG | 0.569868 | 2:-80759311 | None:intergenic |
TCAATTGATGGTGTGGAAAG+CGG | 0.573126 | 2:+80758634 | MsG0280011188.01.T01:CDS |
AGCGGCGAGTATGTCGGTGT+TGG | 0.576766 | 2:+80758652 | MsG0280011188.01.T01:CDS |
AAGGCTTCACCGGCATCCAG+TGG | 0.588506 | 2:-80759326 | None:intergenic |
TATATACAAAACAAGTCCAC+AGG | 0.595990 | 2:+80759356 | MsG0280011188.01.T01:CDS |
TTGTGAAACTACATTGTCCT+CGG | 0.612612 | 2:-80758953 | None:intergenic |
GCTACAACAGTCAGGAGGGT+CGG | 0.621755 | 2:-80758740 | None:intergenic |
ACAGTCAGGAGGGTCGGCAA+TGG | 0.630961 | 2:-80758734 | None:intergenic |
GTTTGCTACAACAGTCAGGA+GGG | 0.632295 | 2:-80758744 | None:intergenic |
GTGGAAAGCGGCGAGTATGT+CGG | 0.632476 | 2:+80758646 | MsG0280011188.01.T01:CDS |
GGTTTGCTACAACAGTCAGG+AGG | 0.652355 | 2:-80758745 | None:intergenic |
ACAATGTAGTTTCACAACCA+AGG | 0.675341 | 2:+80758959 | MsG0280011188.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATAAATTACACTAC+AGG | - | Chr2:80759087-80759106 | None:intergenic | 15.0% |
!! | ACTTTCTAATAGTTAATAAA+GGG | - | Chr2:80757733-80757752 | None:intergenic | 15.0% |
!!! | AAAATTTAGTATTGGAAAAA+AGG | - | Chr2:80759110-80759129 | None:intergenic | 15.0% |
!!! | GTTTTGTATATATTTTTTCA+AGG | - | Chr2:80759348-80759367 | None:intergenic | 15.0% |
!!! | TTAAAAAAGTAAGTTTTAAG+TGG | - | Chr2:80757693-80757712 | None:intergenic | 15.0% |
!!! | TTAATAGAATTGATTTCTAT+TGG | + | Chr2:80757462-80757481 | MsG0280011188.01.T01:intron | 15.0% |
!!! | TTTTGTTTTTCTAACAAATT+AGG | - | Chr2:80759177-80759196 | None:intergenic | 15.0% |
!! | AAAAAAAGAAGTTAATGTTG+AGG | + | Chr2:80758363-80758382 | MsG0280011188.01.T01:intron | 20.0% |
!! | AAGAATGAGAAAAATTCTTA+AGG | + | Chr2:80757770-80757789 | MsG0280011188.01.T01:intron | 20.0% |
!! | AATGTATTCAAAGTTTGAAA+TGG | + | Chr2:80758391-80758410 | MsG0280011188.01.T01:intron | 20.0% |
!! | ACAAACTGAAAATTTAGTAT+TGG | - | Chr2:80759118-80759137 | None:intergenic | 20.0% |
!! | ATAGAACATACTGAAAAATA+AGG | + | Chr2:80758796-80758815 | MsG0280011188.01.T01:intron | 20.0% |
!! | ATATACCAAAATTAGCATAA+TGG | - | Chr2:80757575-80757594 | None:intergenic | 20.0% |
!! | CACTTTCTAATAGTTAATAA+AGG | - | Chr2:80757734-80757753 | None:intergenic | 20.0% |
!! | TACTCATAGAAAATAGAAAT+AGG | - | Chr2:80758535-80758554 | None:intergenic | 20.0% |
!! | TATTAACTATTAGAAAGTGA+TGG | + | Chr2:80757735-80757754 | MsG0280011188.01.T01:intron | 20.0% |
!! | TATTATTTATAAGCTTGTCA+AGG | - | Chr2:80758031-80758050 | None:intergenic | 20.0% |
!!! | AAATTCTAGAGCTTTTAATA+TGG | - | Chr2:80758859-80758878 | None:intergenic | 20.0% |
!!! | AATACTAAATTTTCAGTTTG+TGG | + | Chr2:80759117-80759136 | MsG0280011188.01.T01:intron | 20.0% |
!!! | AGTTAATAAAGGGTAATTTT+TGG | - | Chr2:80757723-80757742 | None:intergenic | 20.0% |
!!! | ATTTTATATCCTTATTTTGC+AGG | + | Chr2:80759239-80759258 | MsG0280011188.01.T01:intron | 20.0% |
!!! | TATTTTCTATGAGTATTGAT+AGG | + | Chr2:80758540-80758559 | MsG0280011188.01.T01:intron | 20.0% |
! | AAAAATTCTTAAGGTCTGTT+TGG | + | Chr2:80757779-80757798 | MsG0280011188.01.T01:intron | 25.0% |
! | AAAGTTCCAATTTCAATTGA+TGG | + | Chr2:80758622-80758641 | MsG0280011188.01.T01:CDS | 25.0% |
! | AACTAGAATACCTTATTCTT+AGG | - | Chr2:80758769-80758788 | None:intergenic | 25.0% |
! | AATGAAACCGATATTGATAT+TGG | + | Chr2:80759284-80759303 | MsG0280011188.01.T01:CDS | 25.0% |
! | AGGTATTCCAATATCAATAT+CGG | - | Chr2:80759294-80759313 | None:intergenic | 25.0% |
! | ATACCAGAATGATTTGATTA+AGG | + | Chr2:80757433-80757452 | MsG0280011188.01.T01:intron | 25.0% |
! | CAAAAATAAGTCAATCCAAA+CGG | + | Chr2:80758091-80758110 | MsG0280011188.01.T01:intron | 25.0% |
! | CTGATTATAAATAACGCTAA+AGG | + | Chr2:80759017-80759036 | MsG0280011188.01.T01:CDS | 25.0% |
! | CTTTAGCGTTATTTATAATC+AGG | - | Chr2:80759019-80759038 | None:intergenic | 25.0% |
! | GATTGTTTGGATAAACTAAA+CGG | - | Chr2:80757617-80757636 | None:intergenic | 25.0% |
! | GTAATTAATTATGCTTTCCT+TGG | + | Chr2:80759416-80759435 | MsG0280011188.01.T01:intron | 25.0% |
! | TCTTTGGATAAACAACTTAA+GGG | - | Chr2:80758118-80758137 | None:intergenic | 25.0% |
!! | AATTTTCAGTTTGTGGTTAT+AGG | + | Chr2:80759124-80759143 | MsG0280011188.01.T01:intron | 25.0% |
!! | AGATTCCATTATGCTAATTT+TGG | + | Chr2:80757567-80757586 | MsG0280011188.01.T01:intron | 25.0% |
!! | ATTTTTGTGGAAAATTGAGT+GGG | + | Chr2:80757222-80757241 | MsG0280011188.01.T01:intron | 25.0% |
!! | TACAATTTTCGTAATCCAAA+CGG | - | Chr2:80757980-80757999 | None:intergenic | 25.0% |
!!! | TATTTTTGTGGAAAATTGAG+TGG | + | Chr2:80757221-80757240 | MsG0280011188.01.T01:intron | 25.0% |
!!! | TCTTCATTAATGGTTTGTTT+TGG | + | Chr2:80758337-80758356 | MsG0280011188.01.T01:intron | 25.0% |
!!! | TCTTGATTAGTCTTCATTAA+TGG | + | Chr2:80758327-80758346 | MsG0280011188.01.T01:intron | 25.0% |
!!! | TTTGTTTGTTTTTATTTCCC+TGG | + | Chr2:80757516-80757535 | MsG0280011188.01.T01:intron | 25.0% |
!!! | TTTTCTTTTGATTCCAATGT+AGG | - | Chr2:80758691-80758710 | None:intergenic | 25.0% |
!!! | TTTTGATTTGATTTGATGCT+AGG | + | Chr2:80757152-80757171 | MsG0280011188.01.T01:intron | 25.0% |
AACTATTAGAAAGTGATGGT+GGG | + | Chr2:80757739-80757758 | MsG0280011188.01.T01:intron | 30.0% | |
AAGAAGATAGGTGTAAAAGA+AGG | - | Chr2:80756922-80756941 | None:intergenic | 30.0% | |
AAGCCTTAATCAAATCATTC+TGG | - | Chr2:80757439-80757458 | None:intergenic | 30.0% | |
AGCGTTATTTATAATCAGGA+TGG | - | Chr2:80759015-80759034 | None:intergenic | 30.0% | |
CTTGTTCTATAAGCGTTAAA+GGG | + | Chr2:80757953-80757972 | MsG0280011188.01.T01:intron | 30.0% | |
GATTTCAGCAAACAACTATA+TGG | + | Chr2:80758509-80758528 | MsG0280011188.01.T01:intron | 30.0% | |
GTCTTTGGATAAACAACTTA+AGG | - | Chr2:80758119-80758138 | None:intergenic | 30.0% | |
TAACCTATCGAAAGAAAAAC+CGG | - | Chr2:80758603-80758622 | None:intergenic | 30.0% | |
TAACTATTAGAAAGTGATGG+TGG | + | Chr2:80757738-80757757 | MsG0280011188.01.T01:intron | 30.0% | |
TATATACAAAACAAGTCCAC+AGG | + | Chr2:80759356-80759375 | MsG0280011188.01.T01:CDS | 30.0% | |
TGACAACTTTCATGATTGTT+TGG | - | Chr2:80757630-80757649 | None:intergenic | 30.0% | |
TTGAAAAGTCCTGCAAAATA+AGG | - | Chr2:80759251-80759270 | None:intergenic | 30.0% | |
TTGTAGCAAACCTAAGAATA+AGG | + | Chr2:80758756-80758775 | MsG0280011188.01.T01:CDS | 30.0% | |
TTTACCTATTGCAAAAACCA+GGG | - | Chr2:80757536-80757555 | None:intergenic | 30.0% | |
! | ACAATTTTCGTAATCCAAAC+GGG | - | Chr2:80757979-80757998 | None:intergenic | 30.0% |
! | CTTGAAATTTTGTTAGCTCA+CGG | + | Chr2:80758911-80758930 | MsG0280011188.01.T01:intron | 30.0% |
! | TTGAAATTTTGTTAGCTCAC+GGG | + | Chr2:80758912-80758931 | MsG0280011188.01.T01:intron | 30.0% |
! | TTTTACCTATTGCAAAAACC+AGG | - | Chr2:80757537-80757556 | None:intergenic | 30.0% |
!! | CTTATTTCTATAAGCTCTCT+AGG | + | Chr2:80757849-80757868 | MsG0280011188.01.T01:intron | 30.0% |
!!! | ATATTTTTTCAAGGCTTCAC+CGG | - | Chr2:80759339-80759358 | None:intergenic | 30.0% |
!!! | GAAGTATGTCTGAGTTTTTT+CGG | + | Chr2:80758568-80758587 | MsG0280011188.01.T01:intron | 30.0% |
!!! | TGCTTTGAAATTTTCTTGCT+TGG | + | Chr2:80757082-80757101 | MsG0280011188.01.T01:intron | 30.0% |
AACACAGAGAAGAAGAAGAT+AGG | - | Chr2:80756934-80756953 | None:intergenic | 35.0% | |
AAGACTAATCAAGAAGACAG+AGG | - | Chr2:80758321-80758340 | None:intergenic | 35.0% | |
AAGTCAGTTACTCTAGGTTA+AGG | - | Chr2:80758144-80758163 | None:intergenic | 35.0% | |
ACAATGTAGTTTCACAACCA+AGG | + | Chr2:80758959-80758978 | MsG0280011188.01.T01:CDS | 35.0% | |
ACAGTTAAGTCAGTTACTCT+AGG | - | Chr2:80758150-80758169 | None:intergenic | 35.0% | |
ATGTGACAACAACTTTGTTC+TGG | + | Chr2:80757026-80757045 | MsG0280011188.01.T01:CDS | 35.0% | |
ATGTTTCACTTCTTGTGTGA+AGG | + | Chr2:80759380-80759399 | MsG0280011188.01.T01:intron | 35.0% | |
CAGTTTGTGGTTATAGGTTT+CGG | + | Chr2:80759130-80759149 | MsG0280011188.01.T01:intron | 35.0% | |
CGTGAGCTAACAAAATTTCA+AGG | - | Chr2:80758913-80758932 | None:intergenic | 35.0% | |
GACTTGATTCTATCTTGTCA+TGG | + | Chr2:80757895-80757914 | MsG0280011188.01.T01:intron | 35.0% | |
GCTTGAAATGCTGTTCTTAT+TGG | + | Chr2:80757110-80757129 | MsG0280011188.01.T01:intron | 35.0% | |
GCTTGTTCTATAAGCGTTAA+AGG | + | Chr2:80757952-80757971 | MsG0280011188.01.T01:intron | 35.0% | |
TCCACACCATCAATTGAAAT+TGG | - | Chr2:80758631-80758650 | None:intergenic | 35.0% | |
TCTCTTGCAGCAATGTAAAA+AGG | + | Chr2:80758204-80758223 | MsG0280011188.01.T01:intron | 35.0% | |
TTCTTCAGCTATATTTGCCT+TGG | - | Chr2:80758979-80758998 | None:intergenic | 35.0% | |
TTGTGAAACTACATTGTCCT+CGG | - | Chr2:80758956-80758975 | None:intergenic | 35.0% | |
! | AGTTTGAAATGGTGAGAACA+AGG | + | Chr2:80758402-80758421 | MsG0280011188.01.T01:intron | 35.0% |
! | CTTCTTACTTTCTCTTTTGC+TGG | + | Chr2:80756961-80756980 | MsG0280011188.01.T01:CDS | 35.0% |
!! | ATTTCCCTGGTTTTTGCAAT+AGG | + | Chr2:80757529-80757548 | MsG0280011188.01.T01:intron | 35.0% |
!! | TCCAATTTCAATTGATGGTG+TGG | + | Chr2:80758627-80758646 | MsG0280011188.01.T01:CDS | 35.0% |
!! | TTTTGCAGGACTTTTCAAGA+TGG | + | Chr2:80759253-80759272 | MsG0280011188.01.T01:intron | 35.0% |
!!! | GAAGCTTGTTTTTTGAGCAT+TGG | + | Chr2:80757310-80757329 | MsG0280011188.01.T01:intron | 35.0% |
!!! | TTTTTTGAGCATTGGATGCT+TGG | + | Chr2:80757318-80757337 | MsG0280011188.01.T01:intron | 35.0% |
AAACAACTTAAGGGTCCGTT+TGG | - | Chr2:80758109-80758128 | None:intergenic | 40.0% | |
AAATGGTGAGAACAAGGTGA+TGG | + | Chr2:80758408-80758427 | MsG0280011188.01.T01:intron | 40.0% | |
ACAAAGTTGTTGTCACATCC+AGG | - | Chr2:80757024-80757043 | None:intergenic | 40.0% | |
AGTATTGCTCCTAAGAAACC+TGG | + | Chr2:80757003-80757022 | MsG0280011188.01.T01:CDS | 40.0% | |
CAAGAAGTGAAACATACCTG+TGG | - | Chr2:80759375-80759394 | None:intergenic | 40.0% | |
CTTCTTCTTCTCTGTGTTCA+TGG | + | Chr2:80756936-80756955 | MsG0280011188.01.T01:CDS | 40.0% | |
GCAAATATAGCTGAAGAAGC+TGG | + | Chr2:80758981-80759000 | MsG0280011188.01.T01:CDS | 40.0% | |
TGCAAGATTTGGACCTACAT+TGG | + | Chr2:80758675-80758694 | MsG0280011188.01.T01:CDS | 40.0% | |
TTGTCACATCCAGGTTTCTT+AGG | - | Chr2:80757015-80757034 | None:intergenic | 40.0% | |
!! | CTATGAGTATTGATAGGTCG+TGG | + | Chr2:80758546-80758565 | MsG0280011188.01.T01:intron | 40.0% |
!! | GGTCTGTTTGGATTAGCTTA+TGG | + | Chr2:80757791-80757810 | MsG0280011188.01.T01:intron | 40.0% |
!! | TCAATTGATGGTGTGGAAAG+CGG | + | Chr2:80758634-80758653 | MsG0280011188.01.T01:CDS | 40.0% |
!! | TCTCAACTGTAGCTGTTTTC+TGG | + | Chr2:80757664-80757683 | MsG0280011188.01.T01:intron | 40.0% |
!! | TGACCGGTTTTTCTTTCGAT+AGG | + | Chr2:80758597-80758616 | MsG0280011188.01.T01:intron | 40.0% |
!! | TTAGGTTTGCTACAACAGTC+AGG | - | Chr2:80758751-80758770 | None:intergenic | 40.0% |
!!! | GTTTTTTCGGCAGATTTGAC+CGG | + | Chr2:80758581-80758600 | MsG0280011188.01.T01:intron | 40.0% |
ATTATGCTTTCCTTGGCCAC+AGG | + | Chr2:80759423-80759442 | MsG0280011188.01.T01:intron | 45.0% | |
CTCTAGGTTAAGGTCGTCTT+TGG | - | Chr2:80758134-80758153 | None:intergenic | 45.0% | |
GTGCAGACACAGAATACACT+AGG | + | Chr2:80758257-80758276 | MsG0280011188.01.T01:intron | 45.0% | |
TTAAAATCTCCCTGTGGCCA+AGG | - | Chr2:80759436-80759455 | None:intergenic | 45.0% | |
TTATGCTTTCCTTGGCCACA+GGG | + | Chr2:80759424-80759443 | MsG0280011188.01.T01:intron | 45.0% | |
! | GTTTGCTACAACAGTCAGGA+GGG | - | Chr2:80758747-80758766 | None:intergenic | 45.0% |
!!! | AATTTATTTTTATATTTTTG+TGG | + | Chr2:80757209-80757228 | MsG0280011188.01.T01:intron | 5.0% |
!!! | TTTATTAATATTTTGTAATA+TGG | + | Chr2:80758883-80758902 | MsG0280011188.01.T01:intron | 5.0% |
CGGCAATGGCAACTCTAGTA+TGG | - | Chr2:80758723-80758742 | None:intergenic | 50.0% | |
TAAGCGTTAAAGGGCCCGTT+TGG | + | Chr2:80757962-80757981 | MsG0280011188.01.T01:intron | 50.0% | |
!! | GAGATCATTTTGGTGCACCG+AGG | + | Chr2:80758936-80758955 | MsG0280011188.01.T01:CDS | 50.0% |
!! | GGTTTGCTACAACAGTCAGG+AGG | - | Chr2:80758748-80758767 | None:intergenic | 50.0% |
!! | GTCGGTGTTGGTGCAAGATT+TGG | + | Chr2:80758664-80758683 | MsG0280011188.01.T01:CDS | 50.0% |
ACCTGCTGTCATGCTTCCAC+TGG | + | Chr2:80759310-80759329 | MsG0280011188.01.T01:CDS | 55.0% | |
GCTACAACAGTCAGGAGGGT+CGG | - | Chr2:80758743-80758762 | None:intergenic | 55.0% | |
GTCATGCTTCCACTGGATGC+CGG | + | Chr2:80759317-80759336 | MsG0280011188.01.T01:CDS | 55.0% | |
GTGGAAAGCGGCGAGTATGT+CGG | + | Chr2:80758646-80758665 | MsG0280011188.01.T01:CDS | 55.0% | |
! | GCTCACGGGCGAGATCATTT+TGG | + | Chr2:80758926-80758945 | MsG0280011188.01.T01:intron | 55.0% |
! | TCCAGTGGAAGCATGACAGC+AGG | - | Chr2:80759314-80759333 | None:intergenic | 55.0% |
AAGGCTTCACCGGCATCCAG+TGG | - | Chr2:80759329-80759348 | None:intergenic | 60.0% | |
ACAGTCAGGAGGGTCGGCAA+TGG | - | Chr2:80758737-80758756 | None:intergenic | 60.0% | |
AGCGGCGAGTATGTCGGTGT+TGG | + | Chr2:80758652-80758671 | MsG0280011188.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 80756916 | 80759455 | 80756916 | ID=MsG0280011188.01;Name=MsG0280011188.01 |
Chr2 | mRNA | 80756916 | 80759455 | 80756916 | ID=MsG0280011188.01.T01;Parent=MsG0280011188.01;Name=MsG0280011188.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|0.75|0.8|5|0|176 |
Chr2 | exon | 80756916 | 80757047 | 80756916 | ID=MsG0280011188.01.T01:exon:28510;Parent=MsG0280011188.01.T01 |
Chr2 | exon | 80758619 | 80758777 | 80758619 | ID=MsG0280011188.01.T01:exon:28511;Parent=MsG0280011188.01.T01 |
Chr2 | exon | 80758927 | 80759038 | 80758927 | ID=MsG0280011188.01.T01:exon:28512;Parent=MsG0280011188.01.T01 |
Chr2 | exon | 80759261 | 80759377 | 80759261 | ID=MsG0280011188.01.T01:exon:28513;Parent=MsG0280011188.01.T01 |
Chr2 | exon | 80759445 | 80759455 | 80759445 | ID=MsG0280011188.01.T01:exon:28514;Parent=MsG0280011188.01.T01 |
Chr2 | CDS | 80756916 | 80757047 | 80756916 | ID=MsG0280011188.01.T01:cds;Parent=MsG0280011188.01.T01 |
Chr2 | CDS | 80758619 | 80758777 | 80758619 | ID=MsG0280011188.01.T01:cds;Parent=MsG0280011188.01.T01 |
Chr2 | CDS | 80758927 | 80759038 | 80758927 | ID=MsG0280011188.01.T01:cds;Parent=MsG0280011188.01.T01 |
Chr2 | CDS | 80759261 | 80759377 | 80759261 | ID=MsG0280011188.01.T01:cds;Parent=MsG0280011188.01.T01 |
Chr2 | CDS | 80759445 | 80759455 | 80759445 | ID=MsG0280011188.01.T01:cds;Parent=MsG0280011188.01.T01 |
Gene Sequence |
Protein sequence |