AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042671.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042671.01.T01 MTR_3g047490 34.226 336 157 7 1 285 1 323 3.32e-50 172
MsG0880042671.01.T01 MTR_6g039060 30.612 392 209 9 24 357 19 405 1.61e-46 167
MsG0880042671.01.T01 MTR_0132s0050 34.153 366 205 9 1 345 1 351 2.37e-45 163
MsG0880042671.01.T01 MTR_5g049460 31.941 407 201 12 24 375 19 404 4.46e-45 162
MsG0880042671.01.T01 MTR_0010s0130 41.148 209 114 3 24 226 19 224 4.11e-41 154
MsG0880042671.01.T01 MTR_6g052660 28.392 398 202 11 34 360 6 391 1.67e-37 143
MsG0880042671.01.T01 MTR_0752s0020 36.364 231 118 5 1 226 1 207 2.43e-37 143
MsG0880042671.01.T01 MTR_7g099763 39.196 199 114 3 26 217 24 222 1.02e-35 133
MsG0880042671.01.T01 MTR_5g084777 40.000 205 106 6 26 218 24 223 1.40e-35 139
MsG0880042671.01.T01 MTR_8g012072 38.725 204 110 4 26 218 24 223 2.92e-35 138
MsG0880042671.01.T01 MTR_6g471790 38.725 204 110 4 26 218 24 223 3.03e-35 138
MsG0880042671.01.T01 MTR_5g459570 38.725 204 110 4 26 218 24 223 3.11e-35 137
MsG0880042671.01.T01 MTR_3g436570 38.725 204 110 4 26 218 24 223 3.32e-35 138
MsG0880042671.01.T01 MTR_0133s0060 38.725 204 110 4 26 218 24 223 3.66e-35 137
MsG0880042671.01.T01 MTR_8g087757 38.725 204 110 4 26 218 24 223 4.02e-35 137
MsG0880042671.01.T01 MTR_0195s0040 27.139 409 234 11 14 360 13 419 3.27e-34 134
MsG0880042671.01.T01 MTR_7g024373 38.235 204 111 4 26 218 24 223 3.39e-34 135
MsG0880042671.01.T01 MTR_4g053915 29.305 331 172 8 26 301 25 348 7.14e-34 132
MsG0880042671.01.T01 MTR_6g047410 27.930 401 217 13 26 360 24 418 3.71e-33 132
MsG0880042671.01.T01 MTR_5g056945 33.613 238 137 5 1 226 1 229 3.30e-32 124
MsG0880042671.01.T01 MTR_3g048350 27.068 399 211 11 34 369 6 387 4.19e-32 129
MsG0880042671.01.T01 MTR_7g068680 35.294 204 118 3 26 219 25 224 1.00e-31 124
MsG0880042671.01.T01 MTR_4g119430 29.524 315 166 9 26 288 24 334 2.81e-31 125
MsG0880042671.01.T01 MTR_7g009270 29.085 306 162 8 34 288 34 335 2.15e-30 124
MsG0880042671.01.T01 MTR_0387s0030 28.180 401 184 10 1 352 1 346 2.87e-30 123
MsG0880042671.01.T01 MTR_1465s0010 28.180 401 179 15 26 358 13 372 8.58e-30 120
MsG0880042671.01.T01 MTR_7g027027 40.909 176 95 5 26 193 24 198 1.49e-29 113
MsG0880042671.01.T01 MTR_0454s0020 27.049 366 195 10 36 336 147 505 3.04e-28 116
MsG0880042671.01.T01 MTR_0015s0160 32.051 234 135 5 26 239 25 254 1.64e-27 114
MsG0880042671.01.T01 MTR_0002s0140 43.796 137 73 1 24 156 19 155 6.06e-27 108
MsG0880042671.01.T01 MTR_6g464050 28.099 363 197 13 14 364 13 323 6.26e-27 114
MsG0880042671.01.T01 MTR_1g053665 32.753 287 153 10 80 344 24 292 6.13e-25 105
MsG0880042671.01.T01 MTR_6g033905 32.836 201 90 3 26 226 25 180 1.03e-24 106
MsG0880042671.01.T01 MTR_6g049080 27.415 383 176 11 24 361 19 344 7.63e-24 102
MsG0880042671.01.T01 MTR_1g099290 28.352 261 153 7 62 308 320 560 1.13e-23 103
MsG0880042671.01.T01 MTR_4g046907 29.938 324 160 10 113 379 1 314 1.33e-23 102
MsG0880042671.01.T01 MTR_0547s0010 29.938 324 160 10 113 379 1 314 1.50e-23 102
MsG0880042671.01.T01 MTR_0322s0040 23.415 410 219 11 26 375 25 399 1.89e-19 90.1
MsG0880042671.01.T01 MTR_8g468090 24.848 330 162 12 68 335 2 307 1.71e-18 87.4
MsG0880042671.01.T01 MTR_3g450160 30.435 161 106 2 72 226 1 161 2.46e-18 87.4
MsG0880042671.01.T01 MTR_7g038780 22.350 349 213 10 26 329 25 360 3.53e-18 86.3
MsG0880042671.01.T01 MTR_3g436840 50.000 98 46 2 1 98 1 95 9.71e-18 85.1
MsG0880042671.01.T01 MTR_7g045830 30.542 203 112 3 30 228 1 178 6.85e-14 73.2
MsG0880042671.01.T01 MTR_1g423950 43.836 73 41 0 26 98 24 96 1.10e-13 67.8
MsG0880042671.01.T01 MTR_3g040210 45.122 82 43 1 20 99 4 85 2.82e-13 71.2
MsG0880042671.01.T01 MTR_3g031890 42.683 82 43 3 26 104 25 105 1.21e-12 65.5
MsG0880042671.01.T01 MTR_1g052035 42.000 100 51 4 1 99 1 94 5.18e-11 63.5
MsG0880042671.01.T01 MTR_0324s0040 30.159 126 80 2 106 226 10 132 6.56e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTTCCTCCCATCTTTA+AGG 0.153003 8:+12384940 MsG0880042671.01.T01:CDS
TGACTCTACTTGAACTATTA+AGG 0.226667 8:-12384085 None:intergenic
CTTCCTTCCTGACTATTTCT+TGG 0.228529 8:-12384437 None:intergenic
AGGTTACTACAACACTCTTT+TGG 0.268967 8:+12384473 MsG0880042671.01.T01:CDS
GAGTATTTCAAGATGCTAAA+TGG 0.300004 8:+12384180 MsG0880042671.01.T01:CDS
TGAACTTGGTCAAGGACTTT+TGG 0.305016 8:+12384214 MsG0880042671.01.T01:CDS
CATAGTCTTCTCTTTGTAGA+TGG 0.316178 8:-12384046 None:intergenic
AATTTACTTCATGGCTATTC+TGG 0.318612 8:+12384623 MsG0880042671.01.T01:CDS
CTGCTGAAACTGAGATAATC+AGG 0.323360 8:+12384918 MsG0880042671.01.T01:CDS
ACGTCCTCAGTGATGGTTAT+AGG 0.334141 8:-12384375 None:intergenic
GAAGCTAGCAATTTACTTCA+TGG 0.334384 8:+12384614 MsG0880042671.01.T01:CDS
AAGCAAAGCGTATCAGAATC+TGG 0.338583 8:+12384021 MsG0880042671.01.T01:CDS
CATTTGATAGCTTAGAAATA+AGG 0.347561 8:+12384334 MsG0880042671.01.T01:CDS
CTGGCCTTCTTTCCTTTAGT+AGG 0.350006 8:-12385154 None:intergenic
AGATGATCCATTACATATCT+TGG 0.352507 8:-12384659 None:intergenic
CCTGTTTCTATCAAGGAAAA+AGG 0.356420 8:+12385205 MsG0880042671.01.T01:CDS
TGCTAGCTTCTGTTGATTGT+TGG 0.363863 8:-12384601 None:intergenic
TTCTGACTCAGTACTAGTTC+TGG 0.378125 8:-12385173 None:intergenic
GCTAGCTTCTGTTGATTGTT+GGG 0.380746 8:-12384600 None:intergenic
GCTTCTGTTGATTGTTGGGT+TGG 0.399652 8:-12384596 None:intergenic
ACGTTATAGCTAAAGCTTGT+AGG 0.401395 8:+12384394 MsG0880042671.01.T01:CDS
TTCTGACACAGCAACTGCTT+TGG 0.413585 8:-12385068 None:intergenic
AGAGTCACTTTCCTTAAAGA+TGG 0.416859 8:-12384951 None:intergenic
AGATGCAAAGCCTTCTGAAA+TGG 0.433259 8:+12384506 MsG0880042671.01.T01:CDS
GAAGATTCCAAGAAATAGTC+AGG 0.435830 8:+12384430 MsG0880042671.01.T01:CDS
AGTATTTCAAGATGCTAAAT+GGG 0.444412 8:+12384181 MsG0880042671.01.T01:CDS
GATGATCCATTACATATCTT+GGG 0.455203 8:-12384658 None:intergenic
CTGATGCACCTAAAGGGAAA+AGG 0.457007 8:+12385101 MsG0880042671.01.T01:CDS
GGAGGAAGATGCGAGGTCTC+AGG 0.460578 8:+12385009 MsG0880042671.01.T01:CDS
GAGGAAGCTGCTCTTGCTAA+AGG 0.460692 8:+12385031 MsG0880042671.01.T01:CDS
CATCTACAAAGAGAAGACTA+TGG 0.463223 8:+12384047 MsG0880042671.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 8:+12384347 MsG0880042671.01.T01:CDS
TGCTAAACCTGTTTCTATCA+AGG 0.477409 8:+12385198 MsG0880042671.01.T01:CDS
AGGAAGCTGCTCTTGCTAAA+GGG 0.478652 8:+12385032 MsG0880042671.01.T01:CDS
GATTGCTTCTTTCAAAGAGC+AGG 0.488635 8:+12384564 MsG0880042671.01.T01:CDS
CTGTTTCTGATGCACCTAAA+GGG 0.489553 8:+12385095 MsG0880042671.01.T01:CDS
TCTAAGCTATCAAATGATGT+AGG 0.490834 8:-12384327 None:intergenic
CTGAAATGGAGATTCACAAC+AGG 0.491040 8:+12384520 MsG0880042671.01.T01:CDS
TCTGATGCTGCTCCTACTAA+AGG 0.495320 8:+12385142 MsG0880042671.01.T01:CDS
TGGGTCAAAGAAAGGGAAAA+TGG 0.497362 8:+12384290 MsG0880042671.01.T01:CDS
ATCAGATTCAGAACTAGTTC+TGG 0.499274 8:-12385125 None:intergenic
AGAAGACTATGGATATTCCA+TGG 0.500726 8:+12384058 MsG0880042671.01.T01:CDS
AAACAAGCTGGGTCAAAGAA+AGG 0.502080 8:+12384282 MsG0880042671.01.T01:CDS
GCTGTTTCTGATGCACCTAA+AGG 0.505921 8:+12385094 MsG0880042671.01.T01:CDS
TGATGCACCTAAAGGGAAAA+GGG 0.511185 8:+12385102 MsG0880042671.01.T01:CDS
AACAAGCTGGGTCAAAGAAA+GGG 0.513083 8:+12384283 MsG0880042671.01.T01:CDS
CTATTCCAGAAGAGAAGAAA+AGG 0.514175 8:+12385254 MsG0880042671.01.T01:CDS
TGCTCCTACTAAAGGAAAGA+AGG 0.516416 8:+12385150 MsG0880042671.01.T01:CDS
CTGAAAGGACTATCAGTAGC+AGG 0.525113 8:+12384831 MsG0880042671.01.T01:CDS
TTGTGAATCTCCATTTCAGA+AGG 0.526263 8:-12384516 None:intergenic
ATCAGTAGCTGAGTACGTCT+TGG 0.528893 8:+12384988 MsG0880042671.01.T01:CDS
CCAGAAGAGAAGAAAAGGTA+AGG 0.528992 8:+12385259 MsG0880042671.01.T01:CDS
TGGGCCAACATATGTGAACT+TGG 0.531084 8:+12384200 MsG0880042671.01.T01:CDS
AGCAAAGCGTATCAGAATCT+GGG 0.533512 8:+12384022 MsG0880042671.01.T01:CDS
TTGACCAAGTTCACATATGT+TGG 0.534216 8:-12384204 None:intergenic
GAGTCACTTTCCTTAAAGAT+GGG 0.539345 8:-12384950 None:intergenic
AAAGTCGTAAGCAAACAAGC+TGG 0.548529 8:+12384270 MsG0880042671.01.T01:CDS
TGTTGTAGTAACCTTGTAGC+AGG 0.549844 8:-12384464 None:intergenic
AGCTATAACGTCCTCAGTGA+TGG 0.550655 8:-12384382 None:intergenic
TGCTAAAGGGAAAGGCAAGA+AGG 0.557921 8:+12385045 MsG0880042671.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG 0.558761 8:+12384882 MsG0880042671.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 8:+12384348 MsG0880042671.01.T01:CDS
ATTCCAAGAAATAGTCAGGA+AGG 0.562379 8:+12384434 MsG0880042671.01.T01:CDS
TGCTTCTTTCAAAGAGCAGG+AGG 0.563512 8:+12384567 MsG0880042671.01.T01:CDS
CAAGAAGTATGAAGTAAACA+TGG 0.567275 8:+12384128 MsG0880042671.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG 0.567877 8:+12384296 MsG0880042671.01.T01:CDS
AAGGAAGATGTCCTGCTACA+AGG 0.568237 8:+12384453 MsG0880042671.01.T01:CDS
AGTAGCTGAGTACGTCTTGG+AGG 0.574153 8:+12384991 MsG0880042671.01.T01:CDS
TGAACTATTAAGGATTCCCA+TGG 0.576043 8:-12384075 None:intergenic
GCTGCTCTTGCTAAAGGGAA+AGG 0.581656 8:+12385037 MsG0880042671.01.T01:CDS
ACTCAGCTACTGATTGAACT+AGG 0.585948 8:-12384979 None:intergenic
GGAGATTCACAACAGGATGT+TGG 0.588861 8:+12384527 MsG0880042671.01.T01:CDS
AAGTCGTAAGCAAACAAGCT+GGG 0.591113 8:+12384271 MsG0880042671.01.T01:CDS
AAAGGAAAGATGCAGAAGGT+TGG 0.591290 8:+12385223 MsG0880042671.01.T01:CDS
AATAGTTCAAGTAGAGTCAC+CGG 0.592431 8:+12384089 MsG0880042671.01.T01:CDS
TATAGCTAAAGCTTGTAGGA+TGG 0.593671 8:+12384398 MsG0880042671.01.T01:CDS
AGCTTGTAGGATGGATGCAG+AGG 0.595153 8:+12384407 MsG0880042671.01.T01:CDS
GAAGACTATGGATATTCCAT+GGG 0.608051 8:+12384059 MsG0880042671.01.T01:CDS
TCACTTTCCTTAAAGATGGG+AGG 0.608137 8:-12384947 None:intergenic
AAGTATGAAGTAAACATGGA+AGG 0.610824 8:+12384132 MsG0880042671.01.T01:CDS
TCGAAGTCTCTACTGCTGAA+AGG 0.616687 8:+12384816 MsG0880042671.01.T01:CDS
TGCTGAAACTGAGATAATCA+GGG 0.625436 8:+12384919 MsG0880042671.01.T01:CDS
TTGAGTGAAGCAAAATCCAC+CGG 0.625573 8:-12384108 None:intergenic
GGAAGATGCGAGGTCTCAGG+AGG 0.628698 8:+12385012 MsG0880042671.01.T01:CDS
AACATATGTGAACTTGGTCA+AGG 0.631522 8:+12384206 MsG0880042671.01.T01:CDS
GCTTGTAGGATGGATGCAGA+GGG 0.632839 8:+12384408 MsG0880042671.01.T01:CDS
AGTTCAAGTAGAGTCACCGG+TGG 0.701435 8:+12384092 MsG0880042671.01.T01:CDS
ACGTCTTGGAGGAAGATGCG+AGG 0.711757 8:+12385002 MsG0880042671.01.T01:CDS
CATTCCTATAACCATCACTG+AGG 0.778544 8:+12384371 MsG0880042671.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATTTCAAGATGCTAAAT+GGG + Chr8:12384181-12384200 MsG0880042671.01.T01:CDS 25.0%
! TAAATTCCCAAGATATGTAA+TGG + Chr8:12384652-12384671 MsG0880042671.01.T01:intron 25.0%
!! CATTTGATAGCTTAGAAATA+AGG + Chr8:12384334-12384353 MsG0880042671.01.T01:CDS 25.0%
!! TGAAATCTTTTATCAAGGAA+GGG + Chr8:12384748-12384767 MsG0880042671.01.T01:intron 25.0%
AAGTATGAAGTAAACATGGA+AGG + Chr8:12384132-12384151 MsG0880042671.01.T01:CDS 30.0%
AATTTACTTCATGGCTATTC+TGG + Chr8:12384623-12384642 MsG0880042671.01.T01:CDS 30.0%
AGATGATCCATTACATATCT+TGG - Chr8:12384662-12384681 None:intergenic 30.0%
GAGTATTTCAAGATGCTAAA+TGG + Chr8:12384180-12384199 MsG0880042671.01.T01:CDS 30.0%
GATGATCCATTACATATCTT+GGG - Chr8:12384661-12384680 None:intergenic 30.0%
TCTAAGCTATCAAATGATGT+AGG - Chr8:12384330-12384349 None:intergenic 30.0%
TGACTCTACTTGAACTATTA+AGG - Chr8:12384088-12384107 None:intergenic 30.0%
! CAAGAAGTATGAAGTAAACA+TGG + Chr8:12384128-12384147 MsG0880042671.01.T01:CDS 30.0%
! CTGAAATCTTTTATCAAGGA+AGG + Chr8:12384747-12384766 MsG0880042671.01.T01:intron 30.0%
! TCTGATAGTGCTTTCATTTA+TGG - Chr8:12384693-12384712 None:intergenic 30.0%
!! ATAAATGAAAGCACTATCAG+AGG + Chr8:12384692-12384711 MsG0880042671.01.T01:intron 30.0%
!! CTAACCACTTTTCATCTTTA+GGG - Chr8:12384889-12384908 None:intergenic 30.0%
!! CTGTCTGAAATCTTTTATCA+AGG + Chr8:12384743-12384762 MsG0880042671.01.T01:intron 30.0%
!! TAACCACTTTTCATCTTTAG+GGG - Chr8:12384888-12384907 None:intergenic 30.0%
!! TCTAACCACTTTTCATCTTT+AGG - Chr8:12384890-12384909 None:intergenic 30.0%
AAAGAAAGGGAAAATGGTCA+TGG + Chr8:12384296-12384315 MsG0880042671.01.T01:CDS 35.0%
AACATATGTGAACTTGGTCA+AGG + Chr8:12384206-12384225 MsG0880042671.01.T01:CDS 35.0%
AATAGTTCAAGTAGAGTCAC+CGG + Chr8:12384089-12384108 MsG0880042671.01.T01:CDS 35.0%
ACGTTATAGCTAAAGCTTGT+AGG + Chr8:12384394-12384413 MsG0880042671.01.T01:CDS 35.0%
AGAAGACTATGGATATTCCA+TGG + Chr8:12384058-12384077 MsG0880042671.01.T01:CDS 35.0%
ATCAGATTCAGAACTAGTTC+TGG - Chr8:12385128-12385147 None:intergenic 35.0%
ATTCCAAGAAATAGTCAGGA+AGG + Chr8:12384434-12384453 MsG0880042671.01.T01:CDS 35.0%
CATAGTCTTCTCTTTGTAGA+TGG - Chr8:12384049-12384068 None:intergenic 35.0%
CATCTACAAAGAGAAGACTA+TGG + Chr8:12384047-12384066 MsG0880042671.01.T01:CDS 35.0%
CTATTCCAGAAGAGAAGAAA+AGG + Chr8:12385254-12385273 MsG0880042671.01.T01:CDS 35.0%
GAAGACTATGGATATTCCAT+GGG + Chr8:12384059-12384078 MsG0880042671.01.T01:CDS 35.0%
GAAGATTCCAAGAAATAGTC+AGG + Chr8:12384430-12384449 MsG0880042671.01.T01:CDS 35.0%
GAAGCTAGCAATTTACTTCA+TGG + Chr8:12384614-12384633 MsG0880042671.01.T01:CDS 35.0%
TATAGCTAAAGCTTGTAGGA+TGG + Chr8:12384398-12384417 MsG0880042671.01.T01:CDS 35.0%
TGAACTATTAAGGATTCCCA+TGG - Chr8:12384078-12384097 None:intergenic 35.0%
TGCTGAAACTGAGATAATCA+GGG + Chr8:12384919-12384938 MsG0880042671.01.T01:CDS 35.0%
TGGAGTTCTTAAAAAGGACA+AGG + Chr8:12384774-12384793 MsG0880042671.01.T01:intron 35.0%
TTGACCAAGTTCACATATGT+TGG - Chr8:12384207-12384226 None:intergenic 35.0%
TTGTGAATCTCCATTTCAGA+AGG - Chr8:12384519-12384538 None:intergenic 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG + Chr8:12384347-12384366 MsG0880042671.01.T01:CDS 35.0%
! AGAGTCACTTTCCTTAAAGA+TGG - Chr8:12384954-12384973 None:intergenic 35.0%
! AGGTTACTACAACACTCTTT+TGG + Chr8:12384473-12384492 MsG0880042671.01.T01:CDS 35.0%
! CCTTTTTCCTTGATAGAAAC+AGG - Chr8:12385208-12385227 None:intergenic 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG + Chr8:12384348-12384367 MsG0880042671.01.T01:CDS 35.0%
! GAGTCACTTTCCTTAAAGAT+GGG - Chr8:12384953-12384972 None:intergenic 35.0%
! GGTTACTACAACACTCTTTT+GGG + Chr8:12384474-12384493 MsG0880042671.01.T01:CDS 35.0%
!! CCTGTTTCTATCAAGGAAAA+AGG + Chr8:12385205-12385224 MsG0880042671.01.T01:CDS 35.0%
!! TGCTAAACCTGTTTCTATCA+AGG + Chr8:12385198-12385217 MsG0880042671.01.T01:CDS 35.0%
AAACAAGCTGGGTCAAAGAA+AGG + Chr8:12384282-12384301 MsG0880042671.01.T01:CDS 40.0%
AAAGGAAAGATGCAGAAGGT+TGG + Chr8:12385223-12385242 MsG0880042671.01.T01:CDS 40.0%
AAAGTCGTAAGCAAACAAGC+TGG + Chr8:12384270-12384289 MsG0880042671.01.T01:CDS 40.0%
AACAAGCTGGGTCAAAGAAA+GGG + Chr8:12384283-12384302 MsG0880042671.01.T01:CDS 40.0%
AAGCAAAGCGTATCAGAATC+TGG + Chr8:12384021-12384040 MsG0880042671.01.T01:CDS 40.0%
AAGCCCCTAAAGATGAAAAG+TGG + Chr8:12384882-12384901 MsG0880042671.01.T01:CDS 40.0%
AAGTCGTAAGCAAACAAGCT+GGG + Chr8:12384271-12384290 MsG0880042671.01.T01:CDS 40.0%
AGCAAAGCGTATCAGAATCT+GGG + Chr8:12384022-12384041 MsG0880042671.01.T01:CDS 40.0%
CATTCCTATAACCATCACTG+AGG + Chr8:12384371-12384390 MsG0880042671.01.T01:CDS 40.0%
CTGAAATGGAGATTCACAAC+AGG + Chr8:12384520-12384539 MsG0880042671.01.T01:CDS 40.0%
CTGCTGAAACTGAGATAATC+AGG + Chr8:12384918-12384937 MsG0880042671.01.T01:CDS 40.0%
GATTGCTTCTTTCAAAGAGC+AGG + Chr8:12384564-12384583 MsG0880042671.01.T01:CDS 40.0%
GGAAAAAGGAAAGATGCAGA+AGG + Chr8:12385219-12385238 MsG0880042671.01.T01:CDS 40.0%
TCACTTTCCTTAAAGATGGG+AGG - Chr8:12384950-12384969 None:intergenic 40.0%
TCAGACAGCAATCTTCCATA+GGG - Chr8:12384731-12384750 None:intergenic 40.0%
TGATGCACCTAAAGGGAAAA+GGG + Chr8:12385102-12385121 MsG0880042671.01.T01:CDS 40.0%
TGCTCCTACTAAAGGAAAGA+AGG + Chr8:12385150-12385169 MsG0880042671.01.T01:CDS 40.0%
TGGGTCAAAGAAAGGGAAAA+TGG + Chr8:12384290-12384309 MsG0880042671.01.T01:CDS 40.0%
TGTTGTAGTAACCTTGTAGC+AGG - Chr8:12384467-12384486 None:intergenic 40.0%
TTCAGACAGCAATCTTCCAT+AGG - Chr8:12384732-12384751 None:intergenic 40.0%
TTCTGACTCAGTACTAGTTC+TGG - Chr8:12385176-12385195 None:intergenic 40.0%
TTGAGTGAAGCAAAATCCAC+CGG - Chr8:12384111-12384130 None:intergenic 40.0%
! ACTCAGCTACTGATTGAACT+AGG - Chr8:12384982-12385001 None:intergenic 40.0%
! AGATGCAAAGCCTTCTGAAA+TGG + Chr8:12384506-12384525 MsG0880042671.01.T01:CDS 40.0%
! CTTCCTTCCTGACTATTTCT+TGG - Chr8:12384440-12384459 None:intergenic 40.0%
! GCTAGCTTCTGTTGATTGTT+GGG - Chr8:12384603-12384622 None:intergenic 40.0%
! TACTACAACACTCTTTTGGG+TGG + Chr8:12384477-12384496 MsG0880042671.01.T01:CDS 40.0%
! TGAACTTGGTCAAGGACTTT+TGG + Chr8:12384214-12384233 MsG0880042671.01.T01:CDS 40.0%
! TGCTAGCTTCTGTTGATTGT+TGG - Chr8:12384604-12384623 None:intergenic 40.0%
! TGTTTGCTTACGACTTTTGC+AGG - Chr8:12384267-12384286 None:intergenic 40.0%
!! ACTACAACACTCTTTTGGGT+GGG + Chr8:12384478-12384497 MsG0880042671.01.T01:CDS 40.0%
!! ATGAAAGCACTATCAGAGGA+AGG + Chr8:12384696-12384715 MsG0880042671.01.T01:intron 40.0%
!! ATGTAATGGATCATCTCTGC+TGG + Chr8:12384666-12384685 MsG0880042671.01.T01:intron 40.0%
!! CTGTTTCTGATGCACCTAAA+GGG + Chr8:12385095-12385114 MsG0880042671.01.T01:CDS 40.0%
!! TGTAATGGATCATCTCTGCT+GGG + Chr8:12384667-12384686 MsG0880042671.01.T01:intron 40.0%
AAGGAAGATGTCCTGCTACA+AGG + Chr8:12384453-12384472 MsG0880042671.01.T01:CDS 45.0%
ACGTCCTCAGTGATGGTTAT+AGG - Chr8:12384378-12384397 None:intergenic 45.0%
AGCTATAACGTCCTCAGTGA+TGG - Chr8:12384385-12384404 None:intergenic 45.0%
AGGAAGCTGCTCTTGCTAAA+GGG + Chr8:12385032-12385051 MsG0880042671.01.T01:CDS 45.0%
ATCAGTAGCTGAGTACGTCT+TGG + Chr8:12384988-12385007 MsG0880042671.01.T01:CDS 45.0%
CTGAAAGGACTATCAGTAGC+AGG + Chr8:12384831-12384850 MsG0880042671.01.T01:CDS 45.0%
CTGATGCACCTAAAGGGAAA+AGG + Chr8:12385101-12385120 MsG0880042671.01.T01:CDS 45.0%
GGAAGGAAACAAGTACCCTA+TGG + Chr8:12384713-12384732 MsG0880042671.01.T01:intron 45.0%
GGACTTTCCTCCCATCTTTA+AGG + Chr8:12384940-12384959 MsG0880042671.01.T01:CDS 45.0%
GGAGATTCACAACAGGATGT+TGG + Chr8:12384527-12384546 MsG0880042671.01.T01:CDS 45.0%
TCGAAGTCTCTACTGCTGAA+AGG + Chr8:12384816-12384835 MsG0880042671.01.T01:CDS 45.0%
TCTGATGCTGCTCCTACTAA+AGG + Chr8:12385142-12385161 MsG0880042671.01.T01:CDS 45.0%
TGCTAAAGGGAAAGGCAAGA+AGG + Chr8:12385045-12385064 MsG0880042671.01.T01:CDS 45.0%
TGCTTCTTTCAAAGAGCAGG+AGG + Chr8:12384567-12384586 MsG0880042671.01.T01:CDS 45.0%
TGGGCCAACATATGTGAACT+TGG + Chr8:12384200-12384219 MsG0880042671.01.T01:CDS 45.0%
TTCTGACACAGCAACTGCTT+TGG - Chr8:12385071-12385090 None:intergenic 45.0%
! CTGGCCTTCTTTCCTTTAGT+AGG - Chr8:12385157-12385176 None:intergenic 45.0%
! GCTTCTGTTGATTGTTGGGT+TGG - Chr8:12384599-12384618 None:intergenic 45.0%
!! CTTTTATCAAGGAAGGGTGC+TGG + Chr8:12384754-12384773 MsG0880042671.01.T01:intron 45.0%
!! GCTGTTTCTGATGCACCTAA+AGG + Chr8:12385094-12385113 MsG0880042671.01.T01:CDS 45.0%
!! GGGTGCTGGAGTTCTTAAAA+AGG + Chr8:12384768-12384787 MsG0880042671.01.T01:intron 45.0%
AGCTTGTAGGATGGATGCAG+AGG + Chr8:12384407-12384426 MsG0880042671.01.T01:CDS 50.0%
AGTAGCTGAGTACGTCTTGG+AGG + Chr8:12384991-12385010 MsG0880042671.01.T01:CDS 50.0%
AGTTCAAGTAGAGTCACCGG+TGG + Chr8:12384092-12384111 MsG0880042671.01.T01:CDS 50.0%
GAGGAAGCTGCTCTTGCTAA+AGG + Chr8:12385031-12385050 MsG0880042671.01.T01:CDS 50.0%
GCTGCTCTTGCTAAAGGGAA+AGG + Chr8:12385037-12385056 MsG0880042671.01.T01:CDS 50.0%
GCTTGTAGGATGGATGCAGA+GGG + Chr8:12384408-12384427 MsG0880042671.01.T01:CDS 50.0%
! GTTCTGGCCCTTTTCCCTTT+AGG - Chr8:12385112-12385131 None:intergenic 50.0%
ACGTCTTGGAGGAAGATGCG+AGG + Chr8:12385002-12385021 MsG0880042671.01.T01:CDS 55.0%
GGAAGATGCGAGGTCTCAGG+AGG + Chr8:12385012-12385031 MsG0880042671.01.T01:CDS 60.0%
GGAGGAAGATGCGAGGTCTC+AGG + Chr8:12385009-12385028 MsG0880042671.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 12383979 12385279 12383979 ID=MsG0880042671.01;Name=MsG0880042671.01
Chr8 mRNA 12383979 12385279 12383979 ID=MsG0880042671.01.T01;Parent=MsG0880042671.01;Name=MsG0880042671.01.T01;_AED=0.43;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|392
Chr8 exon 12383979 12384667 12383979 ID=MsG0880042671.01.T01:exon:240;Parent=MsG0880042671.01.T01
Chr8 exon 12384790 12385279 12384790 ID=MsG0880042671.01.T01:exon:241;Parent=MsG0880042671.01.T01
Chr8 CDS 12383979 12384667 12383979 ID=MsG0880042671.01.T01:cds;Parent=MsG0880042671.01.T01
Chr8 CDS 12384790 12385279 12384790 ID=MsG0880042671.01.T01:cds;Parent=MsG0880042671.01.T01
Gene Sequence

>MsG0880042671.01.T01

ATGGCATCATCAAGCTCAAAAGTTTCAGAATCTACATCAAACAAGCAAAGCGTATCAGAATCTGGGTCCATCTACAAAGAGAAGACTATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGATTGATAGAGACTCAGATGCTGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCTGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGGATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTACAAGGTTACTACAACACTCTTTTGGGTGGGAAGAAAGATGCAAAGCCTTCTGAAATGGAGATTCACAACAGGATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGATCTGACCAACCCAACAATCAACAGAAGCTAGCAATTTACTTCATGGCTATTCTGGAAAAGATAAATTCCCAAGATATGACAAGGAGTGCTTCTGATAGATGTTTCGAAGTCTCTACTGCTGAAAGGACTATCAGTAGCAGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTGACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTACGTCTTGGAGGAAGATGCGAGGTCTCAGGAGGAAGCTGCTCTTGCTAAAGGGAAAGGCAAGAAGGCCAAAGCAGTTGCTGTGTCAGAAGCTGCTGTTTCTGATGCACCTAAAGGGAAAAGGGCCAGAACTAGTTCTGAATCTGATGCTGCTCCTACTAAAGGAAAGAAGGCCAGAACTAGTACTGAGTCAGAAGCTGCTAAACCTGTTTCTATCAAGGAAAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCAGAAGAGAAGAAAAGGTAA
Protein sequence

>MsG0880042671.01.T01

MASSSSKVSESTSNKQSVSESGSIYKEKTMDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMLSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMDAEGRFQEIVRKEDVLLQGYYNTLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMAILEKINSQDMTRSASDRCFEVSTAERTISSRSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESDSDFLVQSVAEYVLEEDARSQEEAALAKGKGKKAKAVAVSEAAVSDAPKGKRARTSSESDAAPTKGKKARTSTESEAAKPVSIKEKGKMQKVGAASIPEEKKR*