AlfalfaGEDB | MsG0880042690.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042690.01

KEGG: -
GO: GO:0016226
PFAM: PF01458

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042690.01.T01	XP_013444418.1	96.727	550	14	2	1	550	1	546	0	1106

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042690.01.T01	Q9ZS97	76.157	562	117	4	1	550	1	557	0	882

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042690.01.T01	A0A072TNQ0	96.727	550	14	2	1	550	1	546	0.0	1106

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048068.01	MsG0880042690.01	0.816626	5.019798e-52	3.575208e-49
MsG0080048085.01	MsG0880042690.01	0.808127	3.608660e-50	2.046517e-47
MsG0080048273.01	MsG0880042690.01	0.823804	1.136845e-53	9.891365e-51
MsG0080048505.01	MsG0880042690.01	0.832172	1.099770e-55	1.219547e-52
MsG0080048528.01	MsG0880042690.01	0.812178	4.832251e-51	3.050957e-48
MsG0080048801.01	MsG0880042690.01	0.808665	2.770637e-50	1.593514e-47
MsG0080048820.01	MsG0880042690.01	0.801222	9.967157e-49	4.734104e-46
MsG0080048845.01	MsG0880042690.01	0.871548	6.284548e-67	2.545252e-63
MsG0080048938.01	MsG0880042690.01	0.801949	7.074331e-49	3.422315e-46
MsG0080048969.01	MsG0880042690.01	0.847372	1.205853e-59	2.138739e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042690.01.T01	MTR_8g019500	96.727	550	14	2	1	550	1	546	0.0	1106
MsG0880042690.01.T01	MTR_7g038720	94.043	554	22	5	1	550	1	547	0.0	1071
MsG0880042690.01.T01	MTR_7g030030	94.043	554	22	5	1	550	1	547	0.0	1071
MsG0880042690.01.T01	MTR_5g014290	25.240	313	202	9	247	541	171	469	2.75e-17	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042690.01.T01	AT4G04770	76.157	562	117	4	1	550	1	557	0.0	882
MsG0880042690.01.T01	AT5G44316	56.835	556	148	8	1	550	1	470	0.0	600
MsG0880042690.01.T01	AT1G32500	24.923	325	222	6	217	531	148	460	1.29e-19	92.4

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Find 166 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGGAAGTTCTCAG+AGG	0.696090	8:-12645216	MsG0880042690.01.T01:three_prime_UTR
AAACGATTCTGTTCGTTTAA+CGG	0.320292	8:+12647752	None:intergenic
AAACTGGGTCCGCCATTACT+TGG	0.436623	8:-12647178	MsG0880042690.01.T01:CDS
AAAGAGTCGGATTATATCCA+AGG	0.544871	8:-12647033	MsG0880042690.01.T01:CDS
AAATAACTCCTAACCAAATC+AGG	0.383693	8:+12647611	None:intergenic
AAATACGTGGATATCTGCAT+CGG	0.617924	8:+12647488	None:intergenic
AACAGCAAGAATTGAGCATG+AGG	0.637018	8:-12645474	MsG0880042690.01.T01:CDS
AACAGCATCCACCGCAACAT+TGG	0.553710	8:+12647727	None:intergenic
AACTATCAGCAGGCGGATAC+GGG	0.442063	8:-12647086	MsG0880042690.01.T01:CDS
AAGAGTCGGATTATATCCAA+GGG	0.647534	8:-12647032	MsG0880042690.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAGAACTAGCAGAAC+AGG	+	Chr8:12647075-12647094	None:intergenic	30.0%
AAAATGGGATCATGTAAATC+AGG	+	Chr8:12647499-12647518	None:intergenic	30.0%
AAACGATTCTGTTCGTTTAA+CGG	+	Chr8:12645557-12645576	None:intergenic	30.0%
AAATAACTCCTAACCAAATC+AGG	+	Chr8:12645698-12645717	None:intergenic	30.0%
AAGTTTAAAAGATGGCGATA+AGG	-	Chr8:12646565-12646584	MsG0880042690.01.T01:intron	30.0%
ACAAACAAACCAAAAACTGA+TGG	+	Chr8:12647230-12647249	None:intergenic	30.0%
ACATGCAAATACAATGACAT+CGG	+	Chr8:12646730-12646749	None:intergenic	30.0%
ACTAAAGTTGAAAGCAAAAC+AGG	+	Chr8:12646459-12646478	None:intergenic	30.0%
ATTTGAAAGGACTTTGATTG+TGG	-	Chr8:12645868-12645887	MsG0880042690.01.T01:intron	30.0%
CATTCAAGGAATTGTTATAG+AGG	-	Chr8:12646310-12646329	MsG0880042690.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	12644916	12648412	12644916	ID=MsG0880042690.01;Name=MsG0880042690.01
Chr8	mRNA	12644916	12648412	12644916	ID=MsG0880042690.01.T01;Parent=MsG0880042690.01;Name=MsG0880042690.01.T01;_AED=0.42;_eAED=0.42;_QI=89\|1\|1\|1\|1\|1\|2\|373\|550
Chr8	exon	12644916	12645507	12644916	ID=MsG0880042690.01.T01:exon:3627;Parent=MsG0880042690.01.T01
Chr8	exon	12646890	12648412	12646890	ID=MsG0880042690.01.T01:exon:3626;Parent=MsG0880042690.01.T01
Chr8	five_prime_UTR	12648324	12648412	12648324	ID=MsG0880042690.01.T01:five_prime_utr;Parent=MsG0880042690.01.T01
Chr8	CDS	12646890	12648323	12646890	ID=MsG0880042690.01.T01:cds;Parent=MsG0880042690.01.T01
Chr8	CDS	12645289	12645507	12645289	ID=MsG0880042690.01.T01:cds;Parent=MsG0880042690.01.T01
Chr8	three_prime_UTR	12644916	12645288	12644916	ID=MsG0880042690.01.T01:three_prime_utr;Parent=MsG0880042690.01.T01

Gene Sequence

>MsG0880042690.01.T01

ATGACTTCTCTTCTCAACGGAAACGTTTCTTCCTTACACCCACAACCCACTCAAACCAGCTTCTCAAAAAAACCACTTCTCCATCAAACCCACTTCCTCCCAATCTCAAAATCCCCCAAACACAAATCACCCTTATCATCCAAAACCACCGTTCAAGTTCAAATCCGTTCCGACGCAGTTAGTTACGATTCTCCAACTTCTTCATCCACCGATGACAAAATCCGTGAAATTATCCGTAACCGCGATTACGACAAAAAATTCGGTTTCAACATCGATATTGATTCTGTCACAATCCCAAAAGGATTATCAACACAAACCATTCGTTTAATCTCAGCCCTCAAATCCGAACCTGATTGGATGCTCAATTTTCGACTAAACGCCTTCGACAAATTCTCCAAAATGAAAGAACCAAATTGGTCAGATAACACATACCCAACTATAGATTTTCAAGATATATGCTTTTATTCAGCTCCTAAGAACAAACCCGAGATTAATAGCTTACAAGAAGCTGATCCTGAGCTTTTGAGATACTTCGATAAGCTCGGTGTACCGTTAAACGAACAGAATCGTTTAGCCAATGTTGCGGTGGATGCTGTTTTAGACAGTGTTTCTATTGCAACTACTCATAGAAAGACTCTTGAGAAGGCTGGTGTTATATTTTGTTCCATTTCCGATGCTGTTAAGGAGTATCCTGATTTGGTTAGGAGTTATTTAGGGAAAGTTGTTCCTAGTGACGACAATTATTACGCTGCTTTGAATGCCGCTGTTTTTAGTGACGGCTCGTTTGTTTATATACCCAAGGGTGTTAAGTGTCCGATGCAGATATCCACGTATTTTAGGATTAATGCATTGGAGACGGGGCAATTTGAAAGGACTTTGATTGTGGCGGATGATAGGAGTATGGTGGAGTATTTGGAAGGGTGTACTGCGCCTTCTTATGATAAGAATCAGCTTCATGCCGCGGTTGTTGAGTTGTACTGCGGAGAGGGGGCGGAGATTAAGTATTCGACCGTGCAGAATTGGTACGCGGGTGATGAGAATGGGAAAGGTGGGATTTATAATTTTGTGACCAAGAGAGGATTGTGTGCTGGTAAGAAGTCCAAGATATCGTGGACCCAGGTGGAAACTGGGTCCGCCATTACTTGGAAGTATCCTAGCGTGGTTTTGGAGGGAGACGAGAGTGTTGGTGAGTTTTATTCGGTTGCTTTGACGAATAACTATCAGCAGGCGGATACGGGGACCAAGATGATACATAAAGGGAAGAATACAAAGAGTCGGATTATATCCAAGGGTATTTCTGCTGGACATTCAAGGAATTGTTATAGAGGACTTGTTCAGGTTCAGTCTAAGGCGGAGAATGCGAAAAACTCTTCGCAGTGTGATTCCATGCTTATTGGTGATAGTGCTGCTGCCAATACCTATCCTTACATTCAGGTGAAAAATCCAACAGCAAGAATTGAGCATGAGGCTAGTACGTCGAAAATTGGTGAAGATCAGTTATTTTACTTTCAACAGAGAGGAATAGACTATGAAAAAGCAATGGCTGCTATGATCTCTGGATTTTGCCGTGATGTCTTCAATGAGCTTCCCGATGAATTTGGCTCCGAGGTGAACCAACTCATGAGCTTGAAGCTTGAGGGGTCAGTCGGATAA

Protein sequence

>MsG0880042690.01.T01

MTSLLNGNVSSLHPQPTQTSFSKKPLLHQTHFLPISKSPKHKSPLSSKTTVQVQIRSDAVSYDSPTSSSTDDKIREIIRNRDYDKKFGFNIDIDSVTIPKGLSTQTIRLISALKSEPDWMLNFRLNAFDKFSKMKEPNWSDNTYPTIDFQDICFYSAPKNKPEINSLQEADPELLRYFDKLGVPLNEQNRLANVAVDAVLDSVSIATTHRKTLEKAGVIFCSISDAVKEYPDLVRSYLGKVVPSDDNYYAALNAAVFSDGSFVYIPKGVKCPMQISTYFRINALETGQFERTLIVADDRSMVEYLEGCTAPSYDKNQLHAAVVELYCGEGAEIKYSTVQNWYAGDENGKGGIYNFVTKRGLCAGKKSKISWTQVETGSAITWKYPSVVLEGDESVGEFYSVALTNNYQQADTGTKMIHKGKNTKSRIISKGISAGHSRNCYRGLVQVQSKAENAKNSSQCDSMLIGDSAAANTYPYIQVKNPTARIEHEASTSKIGEDQLFYFQQRGIDYEKAMAAMISGFCRDVFNELPDEFGSEVNQLMSLKLEGSVG*