AlfalfaGEDB | MsG0880042728.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042728.01

KEGG: -
GO: GO:0030145 GO:0045735
PFAM: PF00190

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042728.01.T01	XP_003627277.1	96.172	209	8	0	1	209	1	209	5.82E-143	407

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042728.01.T01	Q9ZRA4	58.937	207	82	3	3	207	2	207	4.94E-79	238

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042728.01.T01	G7L6U9	96.172	209	8	0	1	209	1	209	2.78e-143	407

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000489.01	MsG0880042728.01	-0.800399	1.468103e-48	6.829056e-46
MsG0180000549.01	MsG0880042728.01	-0.808683	2.745331e-50	1.579724e-47
MsG0180000793.01	MsG0880042728.01	-0.803560	3.289183e-49	1.658169e-46
MsG0180002700.01	MsG0880042728.01	-0.800287	1.547266e-48	7.177009e-46
MsG0180003320.01	MsG0880042728.01	0.810297	1.236026e-50	7.422717e-48
MsG0180004059.01	MsG0880042728.01	0.801139	1.036852e-48	4.914597e-46
MsG0180004424.01	MsG0880042728.01	0.808653	2.786737e-50	1.602261e-47
MsG0180005130.01	MsG0880042728.01	0.852900	3.406900e-61	7.228113e-58
MsG0180005143.01	MsG0880042728.01	0.850527	1.602598e-60	3.148241e-57
MsG0180005760.01	MsG0880042728.01	-0.800212	1.602008e-48	7.416770e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042728.01.T01	MTR_8g020630	96.172	209	8	0	1	209	1	209	7.04e-147	407
MsG0880042728.01.T01	MTR_8g020650	95.694	209	9	0	1	209	1	209	3.41e-138	385
MsG0880042728.01.T01	MTR_8g020670	89.474	209	22	0	1	209	1	209	5.85e-136	379
MsG0880042728.01.T01	MTR_2g044040	74.641	209	53	0	1	209	1	209	2.12e-113	322
MsG0880042728.01.T01	MTR_0284s0010	74.163	209	54	0	1	209	1	209	2.49e-110	315
MsG0880042728.01.T01	MTR_2g045100	71.292	209	60	0	1	209	1	209	1.48e-107	308
MsG0880042728.01.T01	MTR_2g036120	71.014	207	60	0	1	207	1	207	1.51e-106	305
MsG0880042728.01.T01	MTR_3g019710	70.813	209	61	0	1	209	1	209	1.44e-105	303
MsG0880042728.01.T01	MTR_5g031460	68.900	209	65	0	1	209	1	209	3.26e-102	294
MsG0880042728.01.T01	MTR_3g019650	68.900	209	64	1	1	209	1	208	2.87e-100	289

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042728.01.T01	AT1G72610	60.622	193	74	2	19	209	16	208	6.10e-78	233
MsG0880042728.01.T01	AT5G20630	56.522	207	87	3	3	207	4	209	3.40e-76	228
MsG0880042728.01.T01	AT5G39160	40.196	204	110	5	12	206	16	216	4.60e-41	139
MsG0880042728.01.T01	AT5G39190	40.291	206	111	6	12	206	16	220	3.51e-40	137
MsG0880042728.01.T01	AT5G39160	39.806	206	112	6	12	206	16	220	1.03e-39	135
MsG0880042728.01.T01	AT3G62020	36.493	211	124	5	8	208	8	218	1.83e-39	135
MsG0880042728.01.T01	AT5G39130	40.291	206	111	6	12	206	16	220	1.99e-39	135
MsG0880042728.01.T01	AT3G05950	41.969	193	102	5	22	205	30	221	2.00e-39	135
MsG0880042728.01.T01	AT3G04200	39.378	193	109	5	22	206	31	223	5.75e-39	134
MsG0880042728.01.T01	AT5G26700	37.198	207	126	4	5	208	7	212	7.60e-39	133

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Find 47 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAGTGACGAATGCGG+AGG	0.711598	8:-13275217	None:intergenic
AAAATCATTGACAGAAGCTT+GGG	0.456575	8:-13275058	None:intergenic
AAGAAGCTAAAGGCACGTTT+TGG	0.429524	8:+13275600	MsG0880042728.01.T01:CDS
AGATCAAGTAATTGAGCACC+AGG	0.524185	8:-13275507	None:intergenic
ATCAATAATTCGGTAGCACC+AGG	0.528604	8:-13275318	None:intergenic
ATTCCAAGTCCGTTAAGGCC+TGG	0.517650	8:-13275240	None:intergenic
ATTCCAATGCATACTCATCC+TGG	0.533481	8:+13275300	MsG0880042728.01.T01:CDS
CAACGTCTTAGAATAAACCG+CGG	0.742395	8:-13275382	None:intergenic
CAATAATTTACCTTCTGAAT+TGG	0.309787	8:+13275542	MsG0880042728.01.T01:CDS
CAATTCAGAAGGTAAATTAT+TGG	0.292227	8:-13275541	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATCATTGACAGAAGCT+TGG	-	Chr8:13275062-13275081	None:intergenic	30.0%
AAAATCATTGACAGAAGCTT+GGG	-	Chr8:13275061-13275080	None:intergenic	30.0%
TAATTTACCTTCTGAATTGG+TGG	+	Chr8:13275545-13275564	MsG0880042728.01.T01:CDS	30.0%
AGATCAAGTAATTGAGCACC+AGG	-	Chr8:13275510-13275529	None:intergenic	40.0%
ATCAATAATTCGGTAGCACC+AGG	-	Chr8:13275321-13275340	None:intergenic	40.0%
ATTCCAATGCATACTCATCC+TGG	+	Chr8:13275300-13275319	MsG0880042728.01.T01:CDS	40.0%
CAACGTCTTAGAATAAACCG+CGG	-	Chr8:13275385-13275404	None:intergenic	40.0%
CGTCTGATGTGATATTTGCT+AGG	-	Chr8:13275137-13275156	None:intergenic	40.0%
GATCAAGTAATTGAGCACCA+GGG	-	Chr8:13275509-13275528	None:intergenic	40.0%
GTTCAAGGTGAAATAACTGC+TGG	+	Chr8:13275345-13275364	MsG0880042728.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	13275006	13275635	13275006	ID=MsG0880042728.01;Name=MsG0880042728.01
Chr8	mRNA	13275006	13275635	13275006	ID=MsG0880042728.01.T01;Parent=MsG0880042728.01;Name=MsG0880042728.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|209
Chr8	exon	13275006	13275635	13275006	ID=MsG0880042728.01.T01:exon:36777;Parent=MsG0880042728.01.T01
Chr8	CDS	13275006	13275635	13275006	ID=MsG0880042728.01.T01:cds;Parent=MsG0880042728.01.T01

Gene Sequence

>MsG0880042728.01.T01

ATGAAGATTATTCACATAGTTTTTCTTTTCACTATTCTTTCGTTCACTACTTCCCAAGCTTCTGTCAATGATTTTTGTGTTGCAAATTTACAGGCTCCAGATACCCCTTCAGGCTATCACTGCAAACCCCTAGCAAATATCACATCAGACGATTTCGTCTTTCACGGCTTCGTAGCCGGAAACACCAACAACTCTTTCAACGCCGCACTTACCTCCGCATTCGTCACTGATTTTCCAGGCCTTAACGGACTTGGAATCTCCGCAGCGCGGTTAGACATAGCGGAAGGTGGTTCAATTCCAATGCATACTCATCCTGGTGCTACCGAATTATTGATAATAGTTCAAGGTGAAATAACTGCTGGATTTCTGACACCTACCGCGGTTTATTCTAAGACGTTGAAACCGGGCGATCTTATGGTTTTTCCACAAGGGATGTTGCATTTTCAAATTAACACTGGTAAGGGAAAAGCTACTGCTTTTCTTACTTTTAGTAGTGCTAACCCTGGTGCTCAATTACTTGATCTTCTTTTGTTTTCCAATAATTTACCTTCTGAATTGGTGGCACAAACTACTTTCCTTGATCTTGCACAAGTGAAGAAGCTAAAGGCACGTTTTGGTGGAAGAGGGTAG

Protein sequence

>MsG0880042728.01.T01

MKIIHIVFLFTILSFTTSQASVNDFCVANLQAPDTPSGYHCKPLANITSDDFVFHGFVAGNTNNSFNAALTSAFVTDFPGLNGLGISAARLDIAEGGSIPMHTHPGATELLIIVQGEITAGFLTPTAVYSKTLKPGDLMVFPQGMLHFQINTGKGKATAFLTFSSANPGAQLLDLLLFSNNLPSELVAQTTFLDLAQVKKLKARFGGRG*