AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005143.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005143.01.T01 MTR_1g094130 75.191 262 14 5 1 243 34 263 3.22e-67 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 143 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGTGGTAGACTGGTTT+AGG 0.210173 1:+87515837 None:intergenic
GACTTCTTTGGTGGTGGTGG+TGG 0.218370 1:+87516095 None:intergenic
GGAGAGTGGTAGACCGGTTT+TGG 0.227125 1:+87515741 None:intergenic
TTAGGGTAGGTGTGATGAAC+TGG 0.250652 1:+87515906 None:intergenic
GGAGAGTGGTAAACTGGTTT+AGG 0.264396 1:+87516221 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.269476 1:+87516266 None:intergenic
GGGTGAGGGTAGGTGTGAAC+TGG 0.274431 1:+87515858 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1:+87515888 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1:+87515936 None:intergenic
TTGTGTGGTGTTGGTGGTGG+TGG 0.296778 1:+87516005 None:intergenic
CTTCTTTGGTGGTGGTGGTG+GGG 0.304850 1:+87516097 None:intergenic
GTGAGGGTACTTGTGGAATG+GGG 0.310159 1:+87516049 None:intergenic
GGGTGAGGGTAAGTGTGAAC+TGG 0.312030 1:+87515762 None:intergenic
GGAGGAGGAGAATGGTAAAC+TGG 0.315939 1:+87515678 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.323054 1:+87515717 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.323634 1:+87515951 None:intergenic
GGTGGTGGGGAATGGTAGAC+AGG 0.327301 1:+87516020 None:intergenic
TGAGGGTAGGTGTGAACTGG+GGG 0.338637 1:+87515861 None:intergenic
GGGTATTTGTAGGACTTCTT+TGG 0.339824 1:+87516083 None:intergenic
AACTGGGTGGGGAACGTGTG+GGG 0.342140 1:+87515695 None:intergenic
GGGGAATGGACTGGAGGAGG+AGG 0.342363 1:+87515663 None:intergenic
GGTGGTGGAGAGTGGTAAAC+TGG 0.347165 1:+87516215 None:intergenic
TGTGTGGTGTTGGTGGTGGT+GGG 0.350492 1:+87516006 None:intergenic
GGTGAGGGTACTTGTGGAAT+GGG 0.364132 1:+87516048 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.365546 1:+87515720 None:intergenic
GGTGGTGGAGAATGGTAGAC+TGG 0.368383 1:+87516164 None:intergenic
GTGTTGGTGGTGGTGGGGAA+TGG 0.368418 1:+87516012 None:intergenic
ACTTCTTTGGTGGTGGTGGT+GGG 0.372019 1:+87516096 None:intergenic
TGGTGGTGGTGGAGAGGAAT+AGG 0.383114 1:+87516328 None:intergenic
TGAGGGTACTTGTGGAATGG+GGG 0.384288 1:+87516050 None:intergenic
GTGAGGGTAGGTGTGAACTG+GGG 0.384890 1:+87515860 None:intergenic
TAGGGTAGGTGTGATGAACT+GGG 0.385655 1:+87515907 None:intergenic
GGGGAATGGTAGACAGGGTG+AGG 0.393051 1:+87516026 None:intergenic
TTAGGGTAGGTGTGAACTGG+GGG 0.394496 1:+87515954 None:intergenic
TGGTAGACAGGGTGAGGGTG+AGG 0.399555 1:+87516032 None:intergenic
GGTGGAGGAGAGTGGTAGAT+TGG 0.401120 1:+87515786 None:intergenic
GGTGAGGGTAGGTGTGAACT+GGG 0.401214 1:+87515859 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1:+87515882 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1:+87515930 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1:+87515831 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1:+87516260 None:intergenic
GGAGAGTGGTAGATTGGCTT+AGG 0.407710 1:+87515792 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1:+87515889 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1:+87515937 None:intergenic
TAGGACTTCTTTGGTGGTGG+TGG 0.413096 1:+87516092 None:intergenic
TGAGGGTAAGTGTGAACTGG+GGG 0.414542 1:+87515765 None:intergenic
ACTGGGTGGGGAACGTGTGG+GGG 0.414643 1:+87515696 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.414873 1:+87515838 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.418204 1:+87516267 None:intergenic
GAGAGTGGTAAACTGGTTTA+GGG 0.421341 1:+87516222 None:intergenic
TTCTTGTGTGGTGTTGGTGG+TGG 0.422729 1:+87516002 None:intergenic
GGTGGGGAATGGACTGGAGG+AGG 0.423530 1:+87515660 None:intergenic
TAAACTGGGTGGGGAACGTG+TGG 0.424331 1:+87515693 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.425430 1:+87516245 None:intergenic
TATGGCTTCTTGTGTGGTGT+TGG 0.430459 1:+87515996 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.432339 1:+87516242 None:intergenic
TAGGTGTGAACCGGTGGAGG+TGG 0.432885 1:+87516290 None:intergenic
TGGTAGACTGGGTGTGGATG+AGG 0.432940 1:+87516176 None:intergenic
GGTGGAGGTGGGGAATGGAC+TGG 0.437619 1:+87515654 None:intergenic
GGCTTCTTGTGTGGTGTTGG+TGG 0.438133 1:+87515999 None:intergenic
GTTTAGGGTAGGTGTGAACT+GGG 0.438204 1:+87515952 None:intergenic
TAGTAATAGTGTGGTGGAGG+TGG 0.444136 1:+87515642 None:intergenic
GGATGAGGGTACTTGTGAAC+TGG 0.454340 1:+87516140 None:intergenic
GGGTGAGGGTACTTGTGGAA+TGG 0.457239 1:+87516047 None:intergenic
TGGTGGAGATGGGTATTTGT+AGG 0.464447 1:+87516073 None:intergenic
GGTGAGGGTAAGTGTGAACT+GGG 0.467342 1:+87515763 None:intergenic
TGGTACACAGGGTGAGGATG+AGG 0.470660 1:+87516125 None:intergenic
GGAGGTGGGGAATGGACTGG+AGG 0.472430 1:+87515657 None:intergenic
GGAGGAGAGTGGTACTTGTA+TGG 0.473439 1:+87515978 None:intergenic
AGTGTGGTGGAGGTGGGGAA+TGG 0.475102 1:+87515649 None:intergenic
TAAGTGTGAACTGGTGGTGG+TGG 0.475303 1:+87515816 None:intergenic
TACTTGTGAACTGGTGGTGG+TGG 0.478889 1:+87516200 None:intergenic
GTGTGAACCGGTGGAGGTGG+AGG 0.479749 1:+87516293 None:intergenic
TGGTAGACTGGTTTAGGGTG+AGG 0.481256 1:+87515843 None:intergenic
GACTGGTTTAGGGTGAGGGT+AGG 0.481274 1:+87515848 None:intergenic
GGGTAAGTGTGAACTGGTGG+TGG 0.483553 1:+87515813 None:intergenic
CACTTACCCTCACCCAAAAC+CGG 0.486139 1:-87515754 MsG0180005143.01.T01:CDS
GAGGAGAATGGTAAACTGGG+TGG 0.487610 1:+87515682 None:intergenic
TTGTAGGACTTCTTTGGTGG+TGG 0.488177 1:+87516089 None:intergenic
TATTTGTAGGACTTCTTTGG+TGG 0.488416 1:+87516086 None:intergenic
CTGGGTGGGGAACGTGTGGG+GGG 0.492090 1:+87515697 None:intergenic
GTGTGGTGTTGGTGGTGGTG+GGG 0.493914 1:+87516007 None:intergenic
TTGTTTGCTGAAATTTCAGA+TGG 0.495058 1:+87516356 None:intergenic
AGGGTAGGTGTGATGAACTG+GGG 0.495351 1:+87515908 None:intergenic
TTAGGGTAGGTGTGAACTGG+TGG 0.497727 1:+87516239 None:intergenic
GGAGAATGGTAGACTGGGTG+TGG 0.503359 1:+87516170 None:intergenic
GATGAGTAATGTGGTGGTGG+TGG 0.503703 1:+87516317 None:intergenic
GGGTAGGTGTGAACCGGTGG+AGG 0.512967 1:+87516287 None:intergenic
GGCTTAGGGTAAGTGTGAAC+TGG 0.512993 1:+87515807 None:intergenic
AGGAGAATGGTAAACTGGGT+GGG 0.515299 1:+87515683 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.518023 1:+87516236 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1:+87515727 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1:+87515823 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1:+87516252 None:intergenic
AGTAATAGTGTGGTGGAGGT+GGG 0.524670 1:+87515643 None:intergenic
GGAGATGAGTAATGTGGTGG+TGG 0.526418 1:+87516314 None:intergenic
CTCATCTCCTCCACCTCCAC+CGG 0.527332 1:-87516300 MsG0180005143.01.T01:CDS
GGGTACTTGTGAACTGGTGG+TGG 0.529976 1:+87516197 None:intergenic
GGTTTAGGGTAGGTGTGAAC+CGG 0.531173 1:+87516281 None:intergenic
AAACTGGGTGGGGAACGTGT+GGG 0.531189 1:+87515694 None:intergenic
GGATGAGGGTACTTGTGAAC+TGG 0.532303 1:+87516191 None:intergenic
GGAGAGTGGTACACAGGGTG+AGG 0.537722 1:+87516119 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:+87515893 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:+87515941 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:+87516271 None:intergenic
GAGAGTGGTAGATTGGCTTA+GGG 0.544319 1:+87515793 None:intergenic
TTGTAGTAATAGTGTGGTGG+AGG 0.545118 1:+87515639 None:intergenic
GGTAGACTGGTTTAGGGTGA+GGG 0.550330 1:+87515844 None:intergenic
TTAGGGTAGGTGTGAACCGG+TGG 0.552413 1:+87516284 None:intergenic
GGTGGTGGAGAGTGGTAGAC+CGG 0.554181 1:+87515735 None:intergenic
GGAGAATGGTAAACTGGGTG+GGG 0.556186 1:+87515684 None:intergenic
TACTTGTATGGCTTCTTGTG+TGG 0.556733 1:+87515990 None:intergenic
ATCTAGTTGTGGTAAGGTGG+AGG 0.557443 1:+87515609 None:intergenic
GCTATCTAGTTGTGGTAAGG+TGG 0.557614 1:+87515606 None:intergenic
TGGGCTATCTAGTTGTGGTA+AGG 0.561481 1:+87515603 None:intergenic
GTGGTGGAGAATGGTAGACT+GGG 0.561528 1:+87516165 None:intergenic
GTGAGGGTAAGTGTGAACTG+GGG 0.567494 1:+87515764 None:intergenic
GATGAGGGTACTTGTGAACT+GGG 0.567518 1:+87516141 None:intergenic
GGACTGGAGGAGGAGGAGAA+TGG 0.567677 1:+87515670 None:intergenic
GAGGAGGAGAATGGTAAACT+GGG 0.569161 1:+87515679 None:intergenic
GTGGTAAACTGGTTTAGGGT+AGG 0.570919 1:+87516226 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.575724 1:+87516207 None:intergenic
GGTAGACAGGGTGAGGGTGA+GGG 0.577845 1:+87516033 None:intergenic
TTTAGGGTAGGTGTGAACTG+GGG 0.578197 1:+87515953 None:intergenic
GGTGAGGGTGAGGGTACTTG+TGG 0.578511 1:+87516042 None:intergenic
TAGTTGTGGTAAGGTGGAGG+AGG 0.587639 1:+87515612 None:intergenic
TTAGGGTAAGTGTGAACTGG+TGG 0.591700 1:+87515810 None:intergenic
GGGAATGGTAGACAGGGTGA+GGG 0.591903 1:+87516027 None:intergenic
GTAATAGTGTGGTGGAGGTG+GGG 0.597020 1:+87515644 None:intergenic
TGAGGGTACTTGTGAACTGG+TGG 0.603153 1:+87516194 None:intergenic
GGGTAGGTGTGATGAACTGG+GGG 0.603246 1:+87515909 None:intergenic
GGTAGACTGGGTGTGGATGA+GGG 0.606300 1:+87516177 None:intergenic
AATTATGGGCTATCTAGTTG+TGG 0.619700 1:+87515598 None:intergenic
GGTGATTTGTAGTAATAGTG+TGG 0.626570 1:+87515633 None:intergenic
ATGAGGGTACTTGTGAACTG+GGG 0.632619 1:+87516142 None:intergenic
GGTGGAGGAGATGAGTAATG+TGG 0.638580 1:+87516308 None:intergenic
TGTTTGCTGAAATTTCAGAT+GGG 0.639287 1:+87516357 None:intergenic
GTGGTGGGGAATGGTAGACA+GGG 0.647557 1:+87516021 None:intergenic
GGTACACAGGGTGAGGATGA+GGG 0.650631 1:+87516126 None:intergenic
GGAGGAGATGAGTAATGTGG+TGG 0.655082 1:+87516311 None:intergenic
GATTTGTAGTAATAGTGTGG+TGG 0.661309 1:+87515636 None:intergenic
GTAATGTGGTGGTGGTGGAG+AGG 0.667025 1:+87516322 None:intergenic
TGAGGGTACTTGTGAACTGG+GGG 0.698582 1:+87516143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGTTTGCTGAAATTTCAGAT+GGG + Chr1:87515655-87515674 None:intergenic 30.0%
! TTGTTTGCTGAAATTTCAGA+TGG + Chr1:87515656-87515675 None:intergenic 30.0%
GATTTGTAGTAATAGTGTGG+TGG + Chr1:87516376-87516395 None:intergenic 35.0%
TATTTGTAGGACTTCTTTGG+TGG + Chr1:87515926-87515945 None:intergenic 35.0%
! GGTGATTTGTAGTAATAGTG+TGG + Chr1:87516379-87516398 None:intergenic 35.0%
CAGATGGGAAACTCAAAAAG+AGG + Chr1:87515640-87515659 None:intergenic 40.0%
GGGTATTTGTAGGACTTCTT+TGG + Chr1:87515929-87515948 None:intergenic 40.0%
TACTTGTATGGCTTCTTGTG+TGG + Chr1:87516022-87516041 None:intergenic 40.0%
TGGGAAACTCAAAAAGAGGA+TGG + Chr1:87515636-87515655 None:intergenic 40.0%
TTGTAGTAATAGTGTGGTGG+AGG + Chr1:87516373-87516392 None:intergenic 40.0%
! GAGAGTGGTAAACTGGTTTA+GGG + Chr1:87515790-87515809 None:intergenic 40.0%
AGGAGAATGGTAAACTGGGT+GGG + Chr1:87516329-87516348 None:intergenic 45.0%
GAGGAGGAGAATGGTAAACT+GGG + Chr1:87516333-87516352 None:intergenic 45.0%
TAGGGTAGGTGTGATGAACT+GGG + Chr1:87516105-87516124 None:intergenic 45.0%
TATGGCTTCTTGTGTGGTGT+TGG + Chr1:87516016-87516035 None:intergenic 45.0%
TGGTGGAGATGGGTATTTGT+AGG + Chr1:87515939-87515958 None:intergenic 45.0%
TTAGGGTAAGTGTGAACTGG+TGG + Chr1:87516202-87516221 None:intergenic 45.0%
TTAGGGTAGGTGTGATGAAC+TGG + Chr1:87516106-87516125 None:intergenic 45.0%
TTGTAGGACTTCTTTGGTGG+TGG + Chr1:87515923-87515942 None:intergenic 45.0%
! AGTAATAGTGTGGTGGAGGT+GGG + Chr1:87516369-87516388 None:intergenic 45.0%
! GGAGAGTGGTAAACTGGTTT+AGG + Chr1:87515791-87515810 None:intergenic 45.0%
! GTGGTAAACTGGTTTAGGGT+AGG + Chr1:87515786-87515805 None:intergenic 45.0%
! GTTTAGGGTAGGTGTGAACT+GGG + Chr1:87515775-87515794 None:intergenic 45.0%
! TAGTAATAGTGTGGTGGAGG+TGG + Chr1:87516370-87516389 None:intergenic 45.0%
! TTTAGGGTAGGTGTGAACTG+GGG + Chr1:87515774-87515793 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG + Chr1:87515819-87515838 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG + Chr1:87515745-87515764 None:intergenic 45.0%
!! GAGAGTGGTAGATTGGCTTA+GGG + Chr1:87516219-87516238 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG + Chr1:87515820-87515839 None:intergenic 45.0%
AGGGTAGGTGTGATGAACTG+GGG + Chr1:87516104-87516123 None:intergenic 50.0%
CACTTACCCTCACCCAAAAC+CGG - Chr1:87516255-87516274 MsG0180005143.01.T01:CDS 50.0%
GAGGAGAATGGTAAACTGGG+TGG + Chr1:87516330-87516349 None:intergenic 50.0%
GGAGAATGGTAAACTGGGTG+GGG + Chr1:87516328-87516347 None:intergenic 50.0%
GGAGATGAGTAATGTGGTGG+TGG + Chr1:87515698-87515717 None:intergenic 50.0%
GGAGGAGAGTGGTACTTGTA+TGG + Chr1:87516034-87516053 None:intergenic 50.0%
GGAGGAGATGAGTAATGTGG+TGG + Chr1:87515701-87515720 None:intergenic 50.0%
GGAGGAGGAGAATGGTAAAC+TGG + Chr1:87516334-87516353 None:intergenic 50.0%
GGCTTAGGGTAAGTGTGAAC+TGG + Chr1:87516205-87516224 None:intergenic 50.0%
GGTGAGGGTAAGTGTGAACT+GGG + Chr1:87516249-87516268 None:intergenic 50.0%
GGTGGAGGAGATGAGTAATG+TGG + Chr1:87515704-87515723 None:intergenic 50.0%
GTGAGGGTAAGTGTGAACTG+GGG + Chr1:87516248-87516267 None:intergenic 50.0%
TAGTTGTGGTAAGGTGGAGG+AGG + Chr1:87516400-87516419 None:intergenic 50.0%
TGAGGGTAAGTGTGAACTGG+GGG + Chr1:87516247-87516266 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+GGG + Chr1:87515773-87515792 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+TGG + Chr1:87515773-87515792 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+CGG + Chr1:87515731-87515750 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG + Chr1:87515731-87515750 None:intergenic 50.0%
! GTAATAGTGTGGTGGAGGTG+GGG + Chr1:87516368-87516387 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG + Chr1:87515847-87515866 None:intergenic 50.0%
!! ACTTCTTTGGTGGTGGTGGT+GGG + Chr1:87515916-87515935 None:intergenic 50.0%
!! GAGAGTGGTAGACCGGTTTT+GGG + Chr1:87516270-87516289 None:intergenic 50.0%
!! GATGAGTAATGTGGTGGTGG+TGG + Chr1:87515695-87515714 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG + Chr1:87515746-87515765 None:intergenic 50.0%
!! GGAGAGTGGTAGATTGGCTT+AGG + Chr1:87516220-87516239 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG + Chr1:87515821-87515840 None:intergenic 50.0%
!! GGTAGACTGGTTTAGGGTGA+GGG + Chr1:87516168-87516187 None:intergenic 50.0%
!! GGTGAGGGTACTTGTGGAAT+GGG + Chr1:87515964-87515983 None:intergenic 50.0%
!! GTGAGGGTACTTGTGGAATG+GGG + Chr1:87515963-87515982 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG + Chr1:87515741-87515760 None:intergenic 50.0%
!! TAAGTGTGAACTGGTGGTGG+TGG + Chr1:87516196-87516215 None:intergenic 50.0%
!! TACTTGTGAACTGGTGGTGG+TGG + Chr1:87515812-87515831 None:intergenic 50.0%
!! TAGGACTTCTTTGGTGGTGG+TGG + Chr1:87515920-87515939 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG + Chr1:87515818-87515837 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+TGG + Chr1:87515818-87515837 None:intergenic 50.0%
!! TGAGGGTACTTGTGGAATGG+GGG + Chr1:87515962-87515981 None:intergenic 50.0%
!! TGGTAGACTGGTTTAGGGTG+AGG + Chr1:87516169-87516188 None:intergenic 50.0%
!! TTCTTGTGTGGTGTTGGTGG+TGG + Chr1:87516010-87516029 None:intergenic 50.0%
AAACTGGGTGGGGAACGTGT+GGG + Chr1:87516318-87516337 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG + Chr1:87515842-87515861 None:intergenic 55.0%
GGGAATGGTAGACAGGGTGA+GGG + Chr1:87515985-87516004 None:intergenic 55.0%
GGGTAAGTGTGAACTGGTGG+TGG + Chr1:87516199-87516218 None:intergenic 55.0%
GGGTACTTGTGAACTGGTGG+TGG + Chr1:87515815-87515834 None:intergenic 55.0%
GGGTAGGTGTGATGAACTGG+GGG + Chr1:87516103-87516122 None:intergenic 55.0%
GGGTGAGGGTAAGTGTGAAC+TGG + Chr1:87516250-87516269 None:intergenic 55.0%
GGTACACAGGGTGAGGATGA+GGG + Chr1:87515886-87515905 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG + Chr1:87515835-87515854 None:intergenic 55.0%
GGTGAGGGTAGGTGTGAACT+GGG + Chr1:87516153-87516172 None:intergenic 55.0%
GGTGGAGGAGAGTGGTAGAT+TGG + Chr1:87516226-87516245 None:intergenic 55.0%
GTGAGGGTAGGTGTGAACTG+GGG + Chr1:87516152-87516171 None:intergenic 55.0%
TAAACTGGGTGGGGAACGTG+TGG + Chr1:87516319-87516338 None:intergenic 55.0%
TAAGTGTGAACTGGGGGTGG+AGG + Chr1:87516241-87516260 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG + Chr1:87515863-87515882 None:intergenic 55.0%
TACTTGTGGAATGGGGGTGG+TGG + Chr1:87515956-87515975 None:intergenic 55.0%
TAGGTGTGATGAACTGGGGG+TGG + Chr1:87516100-87516119 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG + Chr1:87516151-87516170 None:intergenic 55.0%
TGGTACACAGGGTGAGGATG+AGG + Chr1:87515887-87515906 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG + Chr1:87515836-87515855 None:intergenic 55.0%
TTAGGGTAGGTGTGAACCGG+TGG + Chr1:87515728-87515747 None:intergenic 55.0%
! GGCTTCTTGTGTGGTGTTGG+TGG + Chr1:87516013-87516032 None:intergenic 55.0%
! GTGGTGGGGAATGGTAGACA+GGG + Chr1:87515991-87516010 None:intergenic 55.0%
!! CTTCTTTGGTGGTGGTGGTG+GGG + Chr1:87515915-87515934 None:intergenic 55.0%
!! GACTGGTTTAGGGTGAGGGT+AGG + Chr1:87516164-87516183 None:intergenic 55.0%
!! GACTTCTTTGGTGGTGGTGG+TGG + Chr1:87515917-87515936 None:intergenic 55.0%
!! GGAGAGTGGTAGACCGGTTT+TGG + Chr1:87516271-87516290 None:intergenic 55.0%
!! GGGTGAGGGTACTTGTGGAA+TGG + Chr1:87515965-87515984 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG + Chr1:87515848-87515867 None:intergenic 55.0%
!! GGTGGTGGAGAGTGGTAAAC+TGG + Chr1:87515797-87515816 None:intergenic 55.0%
!! GTAATGTGGTGGTGGTGGAG+AGG + Chr1:87515690-87515709 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG + Chr1:87515767-87515786 None:intergenic 55.0%
!! TGGTGGTGGTGGAGAGGAAT+AGG + Chr1:87515684-87515703 None:intergenic 55.0%
!! TGTGTGGTGTTGGTGGTGGT+GGG + Chr1:87516006-87516025 None:intergenic 55.0%
!! TTCTTTGGTGGTGGTGGTGG+GGG + Chr1:87515914-87515933 None:intergenic 55.0%
!! TTGTGTGGTGTTGGTGGTGG+TGG + Chr1:87516007-87516026 None:intergenic 55.0%
!!! GGTAGACCGGTTTTGGGTGA+GGG + Chr1:87516264-87516283 None:intergenic 55.0%
!!! TGGTAGACCGGTTTTGGGTG+AGG + Chr1:87516265-87516284 None:intergenic 55.0%
AACTGGGTGGGGAACGTGTG+GGG + Chr1:87516317-87516336 None:intergenic 60.0%
CTCATCTCCTCCACCTCCAC+CGG - Chr1:87515709-87515728 MsG0180005143.01.T01:CDS 60.0%
GGACTGGAGGAGGAGGAGAA+TGG + Chr1:87516342-87516361 None:intergenic 60.0%
GGAGAGTGGTACACAGGGTG+AGG + Chr1:87515893-87515912 None:intergenic 60.0%
GGGGAATGGTAGACAGGGTG+AGG + Chr1:87515986-87516005 None:intergenic 60.0%
GGGTAAGTGTGAACTGGGGG+TGG + Chr1:87516244-87516263 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG + Chr1:87515866-87515885 None:intergenic 60.0%
GGGTACTTGTGGAATGGGGG+TGG + Chr1:87515959-87515978 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG + Chr1:87515770-87515789 None:intergenic 60.0%
GGGTGAGGGTAGGTGTGAAC+TGG + Chr1:87516154-87516173 None:intergenic 60.0%
GGTAGACAGGGTGAGGGTGA+GGG + Chr1:87515979-87515998 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG + Chr1:87516082-87516101 None:intergenic 60.0%
GTGGGGGAGAGTGGTACACA+GGG + Chr1:87515898-87515917 None:intergenic 60.0%
GTGTGATGAACTGGGGGTGG+AGG + Chr1:87516097-87516116 None:intergenic 60.0%
TAGGTGTGAACCGGTGGAGG+TGG + Chr1:87515722-87515741 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG + Chr1:87516052-87516071 None:intergenic 60.0%
TGGTAGACAGGGTGAGGGTG+AGG + Chr1:87515980-87515999 None:intergenic 60.0%
TGTGGGGGGTAGGTGTGAAC+TGG + Chr1:87516301-87516320 None:intergenic 60.0%
! AGTGTGGTGGAGGTGGGGAA+TGG + Chr1:87516363-87516382 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG + Chr1:87515856-87515875 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG + Chr1:87515760-87515779 None:intergenic 60.0%
!! GGAATGGGGGTGGTGGAGAT+GGG + Chr1:87515949-87515968 None:intergenic 60.0%
!! GGTGAGGGTGAGGGTACTTG+TGG + Chr1:87515970-87515989 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+CGG + Chr1:87515752-87515771 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG + Chr1:87515752-87515771 None:intergenic 60.0%
!! GGTGGTGGGGAATGGTAGAC+AGG + Chr1:87515992-87516011 None:intergenic 60.0%
!! GTGTGGTGTTGGTGGTGGTG+GGG + Chr1:87516005-87516024 None:intergenic 60.0%
!! GTGTTGGTGGTGGTGGGGAA+TGG + Chr1:87516000-87516019 None:intergenic 60.0%
!! TGGAATGGGGGTGGTGGAGA+TGG + Chr1:87515950-87515969 None:intergenic 60.0%
ACTGGGTGGGGAACGTGTGG+GGG + Chr1:87516316-87516335 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG + Chr1:87516045-87516064 None:intergenic 65.0%
GGGGGGTAGGTGTGAACTGG+TGG + Chr1:87516298-87516317 None:intergenic 65.0%
GGGTAGGTGTGAACCGGTGG+AGG + Chr1:87515725-87515744 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG + Chr1:87516055-87516074 None:intergenic 65.0%
GGTGGAGGTGGGGAATGGAC+TGG + Chr1:87516358-87516377 None:intergenic 65.0%
GGTGGGGGAGAGTGGTACAC+AGG + Chr1:87515899-87515918 None:intergenic 65.0%
GTGTGAACCGGTGGAGGTGG+AGG + Chr1:87515719-87515738 None:intergenic 65.0%
!! GGAGGTGGGGAATGGACTGG+AGG + Chr1:87516355-87516374 None:intergenic 65.0%
!! GGGGAATGGACTGGAGGAGG+AGG + Chr1:87516349-87516368 None:intergenic 65.0%
!! GGTGGGGAATGGACTGGAGG+AGG + Chr1:87516352-87516371 None:intergenic 65.0%
CTGGGTGGGGAACGTGTGGG+GGG + Chr1:87516315-87516334 None:intergenic 70.0%
GTGGGGAACGTGTGGGGGGT+AGG + Chr1:87516311-87516330 None:intergenic 70.0%
!! GTGGTGGTGGTGGGGGAGAG+TGG + Chr1:87515907-87515926 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87515611 87516420 87515611 ID=MsG0180005143.01;Name=MsG0180005143.01
Chr1 mRNA 87515611 87516420 87515611 ID=MsG0180005143.01.T01;Parent=MsG0180005143.01;Name=MsG0180005143.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|269
Chr1 exon 87515611 87516420 87515611 ID=MsG0180005143.01.T01:exon:47690;Parent=MsG0180005143.01.T01
Chr1 CDS 87515611 87516420 87515611 ID=MsG0180005143.01.T01:cds;Parent=MsG0180005143.01.T01
Gene Sequence

>MsG0180005143.01.T01

ATGGCTCTCACTCTTGCATTAGCCATCCTCTTTTTGAGTTTCCCATCTGAAATTTCAGCAAACAAATACTCCTATTCCTCTCCACCACCACCACATTACTCATCTCCTCCACCTCCACCGGTTCACACCTACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCTAAACCAGTTTACCACTCTCCACCACCACCAGTTCACAAGTACCCTCATCCACACCCAGTCTACCATTCTCCACCACCCCCAGTTCACAAGTACCCTCATCCTCACCCTGTGTACCACTCTCCCCCACCACCACCACCAAAGAAGTCCTACAAATACCCATCTCCACCACCCCCATTCCACAAGTACCCTCACCCTCACCCTGTCTACCATTCCCCACCACCACCAACACCACACAAGAAGCCATACAAGTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCATCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACTTACCCTAAGCCAATCTACCACTCTCCTCCACCCCCAGTTCACACTTACCCTCACCCAAAACCGGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCCCCACACGTTCCCCACCCAGTTTACCATTCTCCTCCTCCTCCAGTCCATTCCCCACCTCCACCACACTATTACTACAAATCACCTCCTCCACCTTACCACAACTAG
Protein sequence

>MsG0180005143.01.T01

MALTLALAILFLSFPSEISANKYSYSSPPPPHYSSPPPPPVHTYPKPVYHSPPPPVHTYPKPVYHSPPPPVHKYPHPHPVYHSPPPPVHKYPHPHPVYHSPPPPPPKKSYKYPSPPPPFHKYPHPHPVYHSPPPPTPHKKPYKYHSPPPPVHTYPKPVYHSPPPPVHHTYPKPVYHSPPPPVHTYPHPKPVYHSPPPPVHTYPKPIYHSPPPPVHTYPHPKPVYHSPPPPVHTYPPHVPHPVYHSPPPPVHSPPPPHYYYKSPPPPYHN*