AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005130.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005130.01.T01 MTR_1g094130 75.191 262 14 5 1 243 34 263 3.22e-67 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 143 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGTGGTAGACTGGTTT+AGG 0.210173 1:-87418907 None:intergenic
GACTTCTTTGGTGGTGGTGG+TGG 0.218370 1:-87418649 None:intergenic
GGAGAGTGGTAGACCGGTTT+TGG 0.227125 1:-87419003 None:intergenic
TTAGGGTAGGTGTGATGAAC+TGG 0.250652 1:-87418838 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.269476 1:-87418478 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.269476 1:-87418523 None:intergenic
GGGTGAGGGTAGGTGTGAAC+TGG 0.274431 1:-87418886 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1:-87418808 None:intergenic
GGAGAGTGGTAGACTGGTTT+AGG 0.276912 1:-87418856 None:intergenic
TTGTGTGGTGTTGGTGGTGG+TGG 0.296778 1:-87418739 None:intergenic
CTTCTTTGGTGGTGGTGGTG+GGG 0.304850 1:-87418647 None:intergenic
GTGAGGGTACTTGTGGAATG+GGG 0.310159 1:-87418695 None:intergenic
GGGTGAGGGTAAGTGTGAAC+TGG 0.312030 1:-87418982 None:intergenic
GGAGGAGGAGAATGGTAAAC+TGG 0.315939 1:-87419066 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.323054 1:-87419027 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.323634 1:-87418793 None:intergenic
GGTGGTGGGGAATGGTAGAC+AGG 0.327301 1:-87418724 None:intergenic
TGAGGGTAGGTGTGAACTGG+GGG 0.338637 1:-87418883 None:intergenic
GGGTATTTGTAGGACTTCTT+TGG 0.339824 1:-87418661 None:intergenic
AACTGGGTGGGGAACGTGTG+GGG 0.342140 1:-87419049 None:intergenic
GGGGAATGGACTGGAGGAGG+AGG 0.342363 1:-87419081 None:intergenic
TGTGTGGTGTTGGTGGTGGT+GGG 0.350492 1:-87418738 None:intergenic
GGTGAGGGTACTTGTGGAAT+GGG 0.364132 1:-87418696 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.365546 1:-87419024 None:intergenic
GGTGGTGGAGAATGGTAGAC+TGG 0.368383 1:-87418580 None:intergenic
GTGTTGGTGGTGGTGGGGAA+TGG 0.368418 1:-87418732 None:intergenic
ACTTCTTTGGTGGTGGTGGT+GGG 0.372019 1:-87418648 None:intergenic
TGGTGGTGGTGGAGAGGAAT+AGG 0.383114 1:-87418416 None:intergenic
TGAGGGTACTTGTGGAATGG+GGG 0.384288 1:-87418694 None:intergenic
GTGAGGGTAGGTGTGAACTG+GGG 0.384890 1:-87418884 None:intergenic
TAGGGTAGGTGTGATGAACT+GGG 0.385655 1:-87418837 None:intergenic
GGGGAATGGTAGACAGGGTG+AGG 0.393051 1:-87418718 None:intergenic
TTAGGGTAGGTGTGAACTGG+GGG 0.394496 1:-87418790 None:intergenic
TGGTAGACAGGGTGAGGGTG+AGG 0.399555 1:-87418712 None:intergenic
GGTGGAGGAGAGTGGTAGAT+TGG 0.401120 1:-87418958 None:intergenic
GGTGAGGGTAGGTGTGAACT+GGG 0.401214 1:-87418885 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1:-87418814 None:intergenic
GGTGGAGGAGAGTGGTAGAC+TGG 0.406838 1:-87418862 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1:-87418484 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1:-87418529 None:intergenic
GGTGGTGGAGAGTGGTAGAC+TGG 0.406884 1:-87418913 None:intergenic
GGAGAGTGGTAGATTGGCTT+AGG 0.407710 1:-87418952 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1:-87418807 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.407775 1:-87418855 None:intergenic
TAGGACTTCTTTGGTGGTGG+TGG 0.413096 1:-87418652 None:intergenic
TGAGGGTAAGTGTGAACTGG+GGG 0.414542 1:-87418979 None:intergenic
ACTGGGTGGGGAACGTGTGG+GGG 0.414643 1:-87419048 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.414873 1:-87418906 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.418204 1:-87418477 None:intergenic
GAGAGTGGTAGACTGGTTTA+GGG 0.418204 1:-87418522 None:intergenic
TTCTTGTGTGGTGTTGGTGG+TGG 0.422729 1:-87418742 None:intergenic
GGTGGGGAATGGACTGGAGG+AGG 0.423530 1:-87419084 None:intergenic
TAAACTGGGTGGGGAACGTG+TGG 0.424331 1:-87419051 None:intergenic
TAGGTGTGAACTGGTGGTGG+TGG 0.425430 1:-87418499 None:intergenic
TATGGCTTCTTGTGTGGTGT+TGG 0.430459 1:-87418748 None:intergenic
GGGTAGGTGTGAACTGGTGG+TGG 0.432339 1:-87418502 None:intergenic
TAGGTGTGAACCGGTGGAGG+TGG 0.432885 1:-87418454 None:intergenic
TGGTAGACTGGGTGTGGATG+AGG 0.432940 1:-87418568 None:intergenic
GGTGGAGGTGGGGAATGGAC+TGG 0.437619 1:-87419090 None:intergenic
GGCTTCTTGTGTGGTGTTGG+TGG 0.438133 1:-87418745 None:intergenic
GTTTAGGGTAGGTGTGAACT+GGG 0.438204 1:-87418792 None:intergenic
TAGTAATAGTGTGGTGGAGG+TGG 0.444136 1:-87419102 None:intergenic
GGATGAGGGTACTTGTGAAC+TGG 0.454340 1:-87418604 None:intergenic
GGGTGAGGGTACTTGTGGAA+TGG 0.457239 1:-87418697 None:intergenic
TGGTGGAGATGGGTATTTGT+AGG 0.464447 1:-87418671 None:intergenic
GGTGAGGGTAAGTGTGAACT+GGG 0.467342 1:-87418981 None:intergenic
GGTTTAGGGTAGGTGTGAAC+TGG 0.467806 1:-87418508 None:intergenic
TGGTACACAGGGTGAGGATG+AGG 0.470660 1:-87418619 None:intergenic
GGAGGTGGGGAATGGACTGG+AGG 0.472430 1:-87419087 None:intergenic
GGAGGAGAGTGGTACTTGTA+TGG 0.473439 1:-87418766 None:intergenic
AGTGTGGTGGAGGTGGGGAA+TGG 0.475102 1:-87419095 None:intergenic
TAAGTGTGAACTGGTGGTGG+TGG 0.475303 1:-87418928 None:intergenic
TACTTGTGAACTGGTGGTGG+TGG 0.478889 1:-87418544 None:intergenic
GTGTGAACCGGTGGAGGTGG+AGG 0.479749 1:-87418451 None:intergenic
TGGTAGACTGGTTTAGGGTG+AGG 0.481256 1:-87418901 None:intergenic
GACTGGTTTAGGGTGAGGGT+AGG 0.481274 1:-87418896 None:intergenic
GGGTAAGTGTGAACTGGTGG+TGG 0.483553 1:-87418931 None:intergenic
CACTTACCCTCACCCAAAAC+CGG 0.486139 1:+87418990 MsG0180005130.01.T01:CDS
GAGGAGAATGGTAAACTGGG+TGG 0.487610 1:-87419062 None:intergenic
TTGTAGGACTTCTTTGGTGG+TGG 0.488177 1:-87418655 None:intergenic
TATTTGTAGGACTTCTTTGG+TGG 0.488416 1:-87418658 None:intergenic
CTGGGTGGGGAACGTGTGGG+GGG 0.492090 1:-87419047 None:intergenic
GTGTGGTGTTGGTGGTGGTG+GGG 0.493914 1:-87418737 None:intergenic
TTGTTTGCTGAAATTTCAGA+TGG 0.495058 1:-87418388 None:intergenic
AGGGTAGGTGTGATGAACTG+GGG 0.495351 1:-87418836 None:intergenic
TTAGGGTAGGTGTGAACTGG+TGG 0.497727 1:-87418505 None:intergenic
GGAGAATGGTAGACTGGGTG+TGG 0.503359 1:-87418574 None:intergenic
GATGAGTAATGTGGTGGTGG+TGG 0.503703 1:-87418427 None:intergenic
GGGTAGGTGTGAACCGGTGG+AGG 0.512967 1:-87418457 None:intergenic
GGCTTAGGGTAAGTGTGAAC+TGG 0.512993 1:-87418937 None:intergenic
AGGAGAATGGTAAACTGGGT+GGG 0.515299 1:-87419061 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1:-87418492 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1:-87418921 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.521227 1:-87419017 None:intergenic
AGTAATAGTGTGGTGGAGGT+GGG 0.524670 1:-87419101 None:intergenic
GGAGATGAGTAATGTGGTGG+TGG 0.526418 1:-87418430 None:intergenic
CTCATCTCCTCCACCTCCAC+CGG 0.527332 1:+87418444 MsG0180005130.01.T01:CDS
GGGTACTTGTGAACTGGTGG+TGG 0.529976 1:-87418547 None:intergenic
GGTTTAGGGTAGGTGTGAAC+CGG 0.531173 1:-87418463 None:intergenic
AAACTGGGTGGGGAACGTGT+GGG 0.531189 1:-87419050 None:intergenic
GGATGAGGGTACTTGTGAAC+TGG 0.532303 1:-87418553 None:intergenic
GAACTGGTGGTGGTGGAGAG+TGG 0.534066 1:-87418537 None:intergenic
GGAGAGTGGTACACAGGGTG+AGG 0.537722 1:-87418625 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:-87418473 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:-87418518 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:-87418803 None:intergenic
GTGGTAGACTGGTTTAGGGT+AGG 0.540463 1:-87418851 None:intergenic
GAGAGTGGTAGATTGGCTTA+GGG 0.544319 1:-87418951 None:intergenic
TTGTAGTAATAGTGTGGTGG+AGG 0.545118 1:-87419105 None:intergenic
GGTAGACTGGTTTAGGGTGA+GGG 0.550330 1:-87418900 None:intergenic
TTAGGGTAGGTGTGAACCGG+TGG 0.552413 1:-87418460 None:intergenic
GGTGGTGGAGAGTGGTAGAC+CGG 0.554181 1:-87419009 None:intergenic
GGAGAATGGTAAACTGGGTG+GGG 0.556186 1:-87419060 None:intergenic
TACTTGTATGGCTTCTTGTG+TGG 0.556733 1:-87418754 None:intergenic
ATCTAGTTGTGGTAAGGTGG+AGG 0.557443 1:-87419135 None:intergenic
GCTATCTAGTTGTGGTAAGG+TGG 0.557614 1:-87419138 None:intergenic
TGGGCTATCTAGTTGTGGTA+AGG 0.561481 1:-87419141 None:intergenic
GTGGTGGAGAATGGTAGACT+GGG 0.561528 1:-87418579 None:intergenic
GTGAGGGTAAGTGTGAACTG+GGG 0.567494 1:-87418980 None:intergenic
GATGAGGGTACTTGTGAACT+GGG 0.567518 1:-87418603 None:intergenic
GGACTGGAGGAGGAGGAGAA+TGG 0.567677 1:-87419074 None:intergenic
GAGGAGGAGAATGGTAAACT+GGG 0.569161 1:-87419065 None:intergenic
GGTAGACAGGGTGAGGGTGA+GGG 0.577845 1:-87418711 None:intergenic
TTTAGGGTAGGTGTGAACTG+GGG 0.578197 1:-87418791 None:intergenic
GGTGAGGGTGAGGGTACTTG+TGG 0.578511 1:-87418702 None:intergenic
TAGTTGTGGTAAGGTGGAGG+AGG 0.587639 1:-87419132 None:intergenic
TTAGGGTAAGTGTGAACTGG+TGG 0.591700 1:-87418934 None:intergenic
GGGAATGGTAGACAGGGTGA+GGG 0.591903 1:-87418717 None:intergenic
GTAATAGTGTGGTGGAGGTG+GGG 0.597020 1:-87419100 None:intergenic
TGAGGGTACTTGTGAACTGG+TGG 0.603153 1:-87418550 None:intergenic
GGGTAGGTGTGATGAACTGG+GGG 0.603246 1:-87418835 None:intergenic
GGTAGACTGGGTGTGGATGA+GGG 0.606300 1:-87418567 None:intergenic
AATTATGGGCTATCTAGTTG+TGG 0.619700 1:-87419146 None:intergenic
GGTGATTTGTAGTAATAGTG+TGG 0.626570 1:-87419111 None:intergenic
ATGAGGGTACTTGTGAACTG+GGG 0.632619 1:-87418602 None:intergenic
GGTGGAGGAGATGAGTAATG+TGG 0.638580 1:-87418436 None:intergenic
TGTTTGCTGAAATTTCAGAT+GGG 0.639287 1:-87418387 None:intergenic
GTGGTGGGGAATGGTAGACA+GGG 0.647557 1:-87418723 None:intergenic
GGTACACAGGGTGAGGATGA+GGG 0.650631 1:-87418618 None:intergenic
GGAGGAGATGAGTAATGTGG+TGG 0.655082 1:-87418433 None:intergenic
GATTTGTAGTAATAGTGTGG+TGG 0.661309 1:-87419108 None:intergenic
GTAATGTGGTGGTGGTGGAG+AGG 0.667025 1:-87418422 None:intergenic
TGAGGGTACTTGTGAACTGG+GGG 0.698582 1:-87418601 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGTTTGCTGAAATTTCAGAT+GGG - Chr1:87418390-87418409 None:intergenic 30.0%
! TTGTTTGCTGAAATTTCAGA+TGG - Chr1:87418391-87418410 None:intergenic 30.0%
GATTTGTAGTAATAGTGTGG+TGG - Chr1:87419111-87419130 None:intergenic 35.0%
TATTTGTAGGACTTCTTTGG+TGG - Chr1:87418661-87418680 None:intergenic 35.0%
! GGTGATTTGTAGTAATAGTG+TGG - Chr1:87419114-87419133 None:intergenic 35.0%
CAGATGGGAAACTCAAAAAG+AGG - Chr1:87418375-87418394 None:intergenic 40.0%
GGGTATTTGTAGGACTTCTT+TGG - Chr1:87418664-87418683 None:intergenic 40.0%
TACTTGTATGGCTTCTTGTG+TGG - Chr1:87418757-87418776 None:intergenic 40.0%
TGGGAAACTCAAAAAGAGGA+TGG - Chr1:87418371-87418390 None:intergenic 40.0%
TTGTAGTAATAGTGTGGTGG+AGG - Chr1:87419108-87419127 None:intergenic 40.0%
AGGAGAATGGTAAACTGGGT+GGG - Chr1:87419064-87419083 None:intergenic 45.0%
GAGGAGGAGAATGGTAAACT+GGG - Chr1:87419068-87419087 None:intergenic 45.0%
TAGGGTAGGTGTGATGAACT+GGG - Chr1:87418840-87418859 None:intergenic 45.0%
TATGGCTTCTTGTGTGGTGT+TGG - Chr1:87418751-87418770 None:intergenic 45.0%
TGGTGGAGATGGGTATTTGT+AGG - Chr1:87418674-87418693 None:intergenic 45.0%
TTAGGGTAAGTGTGAACTGG+TGG - Chr1:87418937-87418956 None:intergenic 45.0%
TTAGGGTAGGTGTGATGAAC+TGG - Chr1:87418841-87418860 None:intergenic 45.0%
TTGTAGGACTTCTTTGGTGG+TGG - Chr1:87418658-87418677 None:intergenic 45.0%
! AGTAATAGTGTGGTGGAGGT+GGG - Chr1:87419104-87419123 None:intergenic 45.0%
! GTTTAGGGTAGGTGTGAACT+GGG - Chr1:87418510-87418529 None:intergenic 45.0%
! TAGTAATAGTGTGGTGGAGG+TGG - Chr1:87419105-87419124 None:intergenic 45.0%
! TTTAGGGTAGGTGTGAACTG+GGG - Chr1:87418509-87418528 None:intergenic 45.0%
!! ATGAGGGTACTTGTGAACTG+GGG - Chr1:87418554-87418573 None:intergenic 45.0%
!! GAGAGTGGTAGACTGGTTTA+GGG - Chr1:87418480-87418499 None:intergenic 45.0%
!! GAGAGTGGTAGATTGGCTTA+GGG - Chr1:87418954-87418973 None:intergenic 45.0%
!! GATGAGGGTACTTGTGAACT+GGG - Chr1:87418555-87418574 None:intergenic 45.0%
AGGGTAGGTGTGATGAACTG+GGG - Chr1:87418839-87418858 None:intergenic 50.0%
CACTTACCCTCACCCAAAAC+CGG + Chr1:87418990-87419009 MsG0180005130.01.T01:CDS 50.0%
GAGGAGAATGGTAAACTGGG+TGG - Chr1:87419065-87419084 None:intergenic 50.0%
GGAGAATGGTAAACTGGGTG+GGG - Chr1:87419063-87419082 None:intergenic 50.0%
GGAGATGAGTAATGTGGTGG+TGG - Chr1:87418433-87418452 None:intergenic 50.0%
GGAGGAGAGTGGTACTTGTA+TGG - Chr1:87418769-87418788 None:intergenic 50.0%
GGAGGAGATGAGTAATGTGG+TGG - Chr1:87418436-87418455 None:intergenic 50.0%
GGAGGAGGAGAATGGTAAAC+TGG - Chr1:87419069-87419088 None:intergenic 50.0%
GGCTTAGGGTAAGTGTGAAC+TGG - Chr1:87418940-87418959 None:intergenic 50.0%
GGTGAGGGTAAGTGTGAACT+GGG - Chr1:87418984-87419003 None:intergenic 50.0%
GGTGGAGGAGATGAGTAATG+TGG - Chr1:87418439-87418458 None:intergenic 50.0%
GTGAGGGTAAGTGTGAACTG+GGG - Chr1:87418983-87419002 None:intergenic 50.0%
TAGTTGTGGTAAGGTGGAGG+AGG - Chr1:87419135-87419154 None:intergenic 50.0%
TGAGGGTAAGTGTGAACTGG+GGG - Chr1:87418982-87419001 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+GGG - Chr1:87418508-87418527 None:intergenic 50.0%
TTAGGGTAGGTGTGAACTGG+TGG - Chr1:87418508-87418527 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+CGG - Chr1:87418466-87418485 None:intergenic 50.0%
! GGTTTAGGGTAGGTGTGAAC+TGG - Chr1:87418466-87418485 None:intergenic 50.0%
! GTAATAGTGTGGTGGAGGTG+GGG - Chr1:87419103-87419122 None:intergenic 50.0%
! GTGGTGGAGAATGGTAGACT+GGG - Chr1:87418582-87418601 None:intergenic 50.0%
!! ACTTCTTTGGTGGTGGTGGT+GGG - Chr1:87418651-87418670 None:intergenic 50.0%
!! GAGAGTGGTAGACCGGTTTT+GGG - Chr1:87419005-87419024 None:intergenic 50.0%
!! GATGAGTAATGTGGTGGTGG+TGG - Chr1:87418430-87418449 None:intergenic 50.0%
!! GGAGAGTGGTAGACTGGTTT+AGG - Chr1:87418481-87418500 None:intergenic 50.0%
!! GGAGAGTGGTAGATTGGCTT+AGG - Chr1:87418955-87418974 None:intergenic 50.0%
!! GGATGAGGGTACTTGTGAAC+TGG - Chr1:87418556-87418575 None:intergenic 50.0%
!! GGTAGACTGGTTTAGGGTGA+GGG - Chr1:87418903-87418922 None:intergenic 50.0%
!! GGTGAGGGTACTTGTGGAAT+GGG - Chr1:87418699-87418718 None:intergenic 50.0%
!! GTGAGGGTACTTGTGGAATG+GGG - Chr1:87418698-87418717 None:intergenic 50.0%
!! GTGGTAGACTGGTTTAGGGT+AGG - Chr1:87418476-87418495 None:intergenic 50.0%
!! TAAGTGTGAACTGGTGGTGG+TGG - Chr1:87418931-87418950 None:intergenic 50.0%
!! TACTTGTGAACTGGTGGTGG+TGG - Chr1:87418547-87418566 None:intergenic 50.0%
!! TAGGACTTCTTTGGTGGTGG+TGG - Chr1:87418655-87418674 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+GGG - Chr1:87418553-87418572 None:intergenic 50.0%
!! TGAGGGTACTTGTGAACTGG+TGG - Chr1:87418553-87418572 None:intergenic 50.0%
!! TGAGGGTACTTGTGGAATGG+GGG - Chr1:87418697-87418716 None:intergenic 50.0%
!! TGGTAGACTGGTTTAGGGTG+AGG - Chr1:87418904-87418923 None:intergenic 50.0%
!! TTCTTGTGTGGTGTTGGTGG+TGG - Chr1:87418745-87418764 None:intergenic 50.0%
AAACTGGGTGGGGAACGTGT+GGG - Chr1:87419053-87419072 None:intergenic 55.0%
GGAGAATGGTAGACTGGGTG+TGG - Chr1:87418577-87418596 None:intergenic 55.0%
GGGAATGGTAGACAGGGTGA+GGG - Chr1:87418720-87418739 None:intergenic 55.0%
GGGTAAGTGTGAACTGGTGG+TGG - Chr1:87418934-87418953 None:intergenic 55.0%
GGGTACTTGTGAACTGGTGG+TGG - Chr1:87418550-87418569 None:intergenic 55.0%
GGGTAGGTGTGATGAACTGG+GGG - Chr1:87418838-87418857 None:intergenic 55.0%
GGGTGAGGGTAAGTGTGAAC+TGG - Chr1:87418985-87419004 None:intergenic 55.0%
GGTACACAGGGTGAGGATGA+GGG - Chr1:87418621-87418640 None:intergenic 55.0%
GGTAGACTGGGTGTGGATGA+GGG - Chr1:87418570-87418589 None:intergenic 55.0%
GGTGAGGGTAGGTGTGAACT+GGG - Chr1:87418888-87418907 None:intergenic 55.0%
GGTGGAGGAGAGTGGTAGAT+TGG - Chr1:87418961-87418980 None:intergenic 55.0%
GTGAGGGTAGGTGTGAACTG+GGG - Chr1:87418887-87418906 None:intergenic 55.0%
TAAACTGGGTGGGGAACGTG+TGG - Chr1:87419054-87419073 None:intergenic 55.0%
TAAGTGTGAACTGGGGGTGG+AGG - Chr1:87418976-87418995 None:intergenic 55.0%
TACTTGTGAACTGGGGGTGG+TGG - Chr1:87418598-87418617 None:intergenic 55.0%
TACTTGTGGAATGGGGGTGG+TGG - Chr1:87418691-87418710 None:intergenic 55.0%
TAGGTGTGATGAACTGGGGG+TGG - Chr1:87418835-87418854 None:intergenic 55.0%
TGAGGGTAGGTGTGAACTGG+GGG - Chr1:87418886-87418905 None:intergenic 55.0%
TGGTACACAGGGTGAGGATG+AGG - Chr1:87418622-87418641 None:intergenic 55.0%
TGGTAGACTGGGTGTGGATG+AGG - Chr1:87418571-87418590 None:intergenic 55.0%
TTAGGGTAGGTGTGAACCGG+TGG - Chr1:87418463-87418482 None:intergenic 55.0%
! GGCTTCTTGTGTGGTGTTGG+TGG - Chr1:87418748-87418767 None:intergenic 55.0%
! GTGGTGGGGAATGGTAGACA+GGG - Chr1:87418726-87418745 None:intergenic 55.0%
!! CTTCTTTGGTGGTGGTGGTG+GGG - Chr1:87418650-87418669 None:intergenic 55.0%
!! GACTGGTTTAGGGTGAGGGT+AGG - Chr1:87418899-87418918 None:intergenic 55.0%
!! GACTTCTTTGGTGGTGGTGG+TGG - Chr1:87418652-87418671 None:intergenic 55.0%
!! GGAGAGTGGTAGACCGGTTT+TGG - Chr1:87419006-87419025 None:intergenic 55.0%
!! GGGTGAGGGTACTTGTGGAA+TGG - Chr1:87418700-87418719 None:intergenic 55.0%
!! GGTGGTGGAGAATGGTAGAC+TGG - Chr1:87418583-87418602 None:intergenic 55.0%
!! GTAATGTGGTGGTGGTGGAG+AGG - Chr1:87418425-87418444 None:intergenic 55.0%
!! TAGGTGTGAACTGGTGGTGG+TGG - Chr1:87418502-87418521 None:intergenic 55.0%
!! TGGTGGTGGTGGAGAGGAAT+AGG - Chr1:87418419-87418438 None:intergenic 55.0%
!! TGTGTGGTGTTGGTGGTGGT+GGG - Chr1:87418741-87418760 None:intergenic 55.0%
!! TTCTTTGGTGGTGGTGGTGG+GGG - Chr1:87418649-87418668 None:intergenic 55.0%
!! TTGTGTGGTGTTGGTGGTGG+TGG - Chr1:87418742-87418761 None:intergenic 55.0%
!!! GGTAGACCGGTTTTGGGTGA+GGG - Chr1:87418999-87419018 None:intergenic 55.0%
!!! TGGTAGACCGGTTTTGGGTG+AGG - Chr1:87419000-87419019 None:intergenic 55.0%
AACTGGGTGGGGAACGTGTG+GGG - Chr1:87419052-87419071 None:intergenic 60.0%
CTCATCTCCTCCACCTCCAC+CGG + Chr1:87418444-87418463 MsG0180005130.01.T01:CDS 60.0%
GGACTGGAGGAGGAGGAGAA+TGG - Chr1:87419077-87419096 None:intergenic 60.0%
GGAGAGTGGTACACAGGGTG+AGG - Chr1:87418628-87418647 None:intergenic 60.0%
GGGGAATGGTAGACAGGGTG+AGG - Chr1:87418721-87418740 None:intergenic 60.0%
GGGTAAGTGTGAACTGGGGG+TGG - Chr1:87418979-87418998 None:intergenic 60.0%
GGGTACTTGTGAACTGGGGG+TGG - Chr1:87418601-87418620 None:intergenic 60.0%
GGGTACTTGTGGAATGGGGG+TGG - Chr1:87418694-87418713 None:intergenic 60.0%
GGGTAGGTGTGAACTGGTGG+TGG - Chr1:87418505-87418524 None:intergenic 60.0%
GGGTGAGGGTAGGTGTGAAC+TGG - Chr1:87418889-87418908 None:intergenic 60.0%
GGTAGACAGGGTGAGGGTGA+GGG - Chr1:87418714-87418733 None:intergenic 60.0%
GGTGGAGGAGAGTGGTAGAC+TGG - Chr1:87418817-87418836 None:intergenic 60.0%
GTGGGGGAGAGTGGTACACA+GGG - Chr1:87418633-87418652 None:intergenic 60.0%
GTGTGATGAACTGGGGGTGG+AGG - Chr1:87418832-87418851 None:intergenic 60.0%
TAGGTGTGAACCGGTGGAGG+TGG - Chr1:87418457-87418476 None:intergenic 60.0%
TAGGTGTGAACTGGGGGTGG+AGG - Chr1:87418787-87418806 None:intergenic 60.0%
TGGTAGACAGGGTGAGGGTG+AGG - Chr1:87418715-87418734 None:intergenic 60.0%
TGTGGGGGGTAGGTGTGAAC+TGG - Chr1:87419036-87419055 None:intergenic 60.0%
! AGTGTGGTGGAGGTGGGGAA+TGG - Chr1:87419098-87419117 None:intergenic 60.0%
!! GAACTGGGGGTGGTGGAGAA+TGG - Chr1:87418591-87418610 None:intergenic 60.0%
!! GAACTGGTGGTGGTGGAGAG+TGG - Chr1:87418495-87418514 None:intergenic 60.0%
!! GGAATGGGGGTGGTGGAGAT+GGG - Chr1:87418684-87418703 None:intergenic 60.0%
!! GGTGAGGGTGAGGGTACTTG+TGG - Chr1:87418705-87418724 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+CGG - Chr1:87418487-87418506 None:intergenic 60.0%
!! GGTGGTGGAGAGTGGTAGAC+TGG - Chr1:87418487-87418506 None:intergenic 60.0%
!! GGTGGTGGGGAATGGTAGAC+AGG - Chr1:87418727-87418746 None:intergenic 60.0%
!! GTGTGGTGTTGGTGGTGGTG+GGG - Chr1:87418740-87418759 None:intergenic 60.0%
!! GTGTTGGTGGTGGTGGGGAA+TGG - Chr1:87418735-87418754 None:intergenic 60.0%
!! TGGAATGGGGGTGGTGGAGA+TGG - Chr1:87418685-87418704 None:intergenic 60.0%
ACTGGGTGGGGAACGTGTGG+GGG - Chr1:87419051-87419070 None:intergenic 65.0%
GAACTGGGGGTGGAGGAGAG+TGG - Chr1:87418780-87418799 None:intergenic 65.0%
GGGGGGTAGGTGTGAACTGG+TGG - Chr1:87419033-87419052 None:intergenic 65.0%
GGGTAGGTGTGAACCGGTGG+AGG - Chr1:87418460-87418479 None:intergenic 65.0%
GGGTAGGTGTGAACTGGGGG+TGG - Chr1:87418790-87418809 None:intergenic 65.0%
GGTGGAGGTGGGGAATGGAC+TGG - Chr1:87419093-87419112 None:intergenic 65.0%
GGTGGGGGAGAGTGGTACAC+AGG - Chr1:87418634-87418653 None:intergenic 65.0%
GTGTGAACCGGTGGAGGTGG+AGG - Chr1:87418454-87418473 None:intergenic 65.0%
!! GGAGGTGGGGAATGGACTGG+AGG - Chr1:87419090-87419109 None:intergenic 65.0%
!! GGGGAATGGACTGGAGGAGG+AGG - Chr1:87419084-87419103 None:intergenic 65.0%
!! GGTGGGGAATGGACTGGAGG+AGG - Chr1:87419087-87419106 None:intergenic 65.0%
CTGGGTGGGGAACGTGTGGG+GGG - Chr1:87419050-87419069 None:intergenic 70.0%
GTGGGGAACGTGTGGGGGGT+AGG - Chr1:87419046-87419065 None:intergenic 70.0%
!! GTGGTGGTGGTGGGGGAGAG+TGG - Chr1:87418642-87418661 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87418346 87419155 87418346 ID=MsG0180005130.01;Name=MsG0180005130.01
Chr1 mRNA 87418346 87419155 87418346 ID=MsG0180005130.01.T01;Parent=MsG0180005130.01;Name=MsG0180005130.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|269
Chr1 exon 87418346 87419155 87418346 ID=MsG0180005130.01.T01:exon:47598;Parent=MsG0180005130.01.T01
Chr1 CDS 87418346 87419155 87418346 ID=MsG0180005130.01.T01:cds;Parent=MsG0180005130.01.T01
Gene Sequence

>MsG0180005130.01.T01

ATGGCTCTCACTCTTGCATTAGCCATCCTCTTTTTGAGTTTCCCATCTGAAATTTCAGCAAACAAATACTCCTATTCCTCTCCACCACCACCACATTACTCATCTCCTCCACCTCCACCGGTTCACACCTACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACAAGTACCCTCATCCACACCCAGTCTACCATTCTCCACCACCCCCAGTTCACAAGTACCCTCATCCTCACCCTGTGTACCACTCTCCCCCACCACCACCACCAAAGAAGTCCTACAAATACCCATCTCCACCACCCCCATTCCACAAGTACCCTCACCCTCACCCTGTCTACCATTCCCCACCACCACCAACACCACACAAGAAGCCATACAAGTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCATCACACCTACCCTAAACCAGTCTACCACTCTCCTCCACCCCCAGTTCACACCTACCCTCACCCTAAACCAGTCTACCACTCTCCACCACCACCAGTTCACACTTACCCTAAGCCAATCTACCACTCTCCTCCACCCCCAGTTCACACTTACCCTCACCCAAAACCGGTCTACCACTCTCCACCACCACCAGTTCACACCTACCCCCCACACGTTCCCCACCCAGTTTACCATTCTCCTCCTCCTCCAGTCCATTCCCCACCTCCACCACACTATTACTACAAATCACCTCCTCCACCTTACCACAACTAG

Protein sequence

>MsG0180005130.01.T01

MALTLALAILFLSFPSEISANKYSYSSPPPPHYSSPPPPPVHTYPKPVYHSPPPPVHTYPKPVYHSPPPPVHKYPHPHPVYHSPPPPVHKYPHPHPVYHSPPPPPPKKSYKYPSPPPPFHKYPHPHPVYHSPPPPTPHKKPYKYHSPPPPVHTYPKPVYHSPPPPVHHTYPKPVYHSPPPPVHTYPHPKPVYHSPPPPVHTYPKPIYHSPPPPVHTYPHPKPVYHSPPPPVHTYPPHVPHPVYHSPPPPVHSPPPPHYYYKSPPPPYHN*