Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043980.01.T01 | RHN62280.1 | 94.545 | 110 | 5 | 1 | 1 | 109 | 1 | 110 | 3.25E-66 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043980.01.T01 | B2X050 | 36.842 | 133 | 67 | 5 | 14 | 139 | 7 | 129 | 6.00E-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043980.01.T01 | A0A396I9J0 | 94.545 | 110 | 5 | 1 | 1 | 109 | 1 | 110 | 1.55e-66 | 208 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000065.01 | MsG0880043980.01 | 0.809303 | 2.022240e-50 | 1.183074e-47 |
| MsG0180003669.01 | MsG0880043980.01 | 0.804215 | 2.404469e-49 | 1.232611e-46 |
| MsG0180004264.01 | MsG0880043980.01 | 0.815791 | 7.713896e-52 | 5.370431e-49 |
| MsG0280010614.01 | MsG0880043980.01 | 0.802083 | 6.637103e-49 | 3.221954e-46 |
| MsG0380014573.01 | MsG0880043980.01 | 0.817092 | 3.944316e-52 | 2.845367e-49 |
| MsG0680035455.01 | MsG0880043980.01 | 0.807530 | 4.832779e-50 | 2.698239e-47 |
| MsG0580024073.01 | MsG0880043980.01 | 0.818424 | 1.974829e-52 | 1.477758e-49 |
| MsG0380016475.01 | MsG0880043980.01 | 0.808495 | 3.011437e-50 | 1.724451e-47 |
| MsG0580027401.01 | MsG0880043980.01 | 0.811151 | 8.080113e-51 | 4.963924e-48 |
| MsG0780038495.01 | MsG0880043980.01 | 0.808755 | 2.650605e-50 | 1.528106e-47 |
| MsG0780039252.01 | MsG0880043980.01 | 0.801279 | 9.703524e-49 | 4.615636e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043980.01.T01 | MTR_4g087460 | 72.436 | 156 | 33 | 3 | 1 | 155 | 1 | 147 | 1.02e-69 | 214 |
| MsG0880043980.01.T01 | MTR_0623s0020 | 92.424 | 66 | 5 | 0 | 109 | 174 | 3 | 68 | 4.10e-39 | 128 |
| MsG0880043980.01.T01 | MTR_0109s0150 | 57.426 | 101 | 33 | 3 | 68 | 164 | 120 | 214 | 3.98e-30 | 110 |
| MsG0880043980.01.T01 | MTR_6g045377 | 59.574 | 94 | 28 | 2 | 84 | 167 | 259 | 352 | 2.21e-29 | 111 |
| MsG0880043980.01.T01 | MTR_4g043785 | 84.746 | 59 | 9 | 0 | 109 | 167 | 154 | 212 | 3.44e-29 | 107 |
| MsG0880043980.01.T01 | MTR_0623s0010 | 90.698 | 43 | 4 | 0 | 132 | 174 | 81 | 123 | 8.97e-22 | 86.3 |
| MsG0880043980.01.T01 | MTR_3g098470 | 38.462 | 143 | 67 | 7 | 16 | 155 | 29 | 153 | 7.70e-18 | 79.3 |
| MsG0880043980.01.T01 | MTR_8g031630 | 38.514 | 148 | 74 | 6 | 24 | 158 | 9 | 152 | 1.82e-17 | 78.2 |
| MsG0880043980.01.T01 | MTR_5g062280 | 35.294 | 153 | 82 | 5 | 19 | 158 | 4 | 152 | 4.02e-17 | 77.0 |
| MsG0880043980.01.T01 | MTR_8g031600 | 38.667 | 150 | 75 | 6 | 22 | 158 | 7 | 152 | 4.02e-17 | 77.0 |
| MsG0880043980.01.T01 | MTR_8g031650 | 38.514 | 148 | 74 | 6 | 24 | 158 | 9 | 152 | 4.45e-17 | 78.2 |
| MsG0880043980.01.T01 | MTR_8g031650 | 38.095 | 147 | 74 | 6 | 25 | 158 | 270 | 412 | 1.63e-16 | 76.6 |
| MsG0880043980.01.T01 | MTR_8g031610 | 40.000 | 145 | 70 | 7 | 24 | 155 | 7 | 147 | 8.43e-17 | 76.3 |
| MsG0880043980.01.T01 | MTR_8g031650 | 38.095 | 147 | 74 | 6 | 25 | 158 | 104 | 246 | 1.28e-16 | 76.6 |
| MsG0880043980.01.T01 | MTR_8g032030 | 50.562 | 89 | 40 | 3 | 21 | 109 | 6 | 90 | 2.21e-16 | 74.3 |
| MsG0880043980.01.T01 | MTR_7g076660 | 52.326 | 86 | 37 | 3 | 24 | 109 | 9 | 90 | 2.79e-16 | 74.7 |
| MsG0880043980.01.T01 | MTR_8g031980 | 44.762 | 105 | 54 | 3 | 18 | 122 | 3 | 103 | 3.08e-16 | 74.7 |
| MsG0880043980.01.T01 | MTR_7g076660 | 52.326 | 86 | 37 | 3 | 24 | 109 | 10 | 91 | 3.09e-16 | 74.7 |
| MsG0880043980.01.T01 | MTR_1g031180 | 43.617 | 94 | 47 | 3 | 16 | 109 | 34 | 121 | 2.02e-15 | 72.8 |
| MsG0880043980.01.T01 | MTR_8g096060 | 44.086 | 93 | 46 | 2 | 16 | 108 | 31 | 117 | 2.05e-15 | 72.8 |
| MsG0880043980.01.T01 | MTR_7g076655 | 38.732 | 142 | 72 | 7 | 24 | 158 | 9 | 142 | 3.87e-15 | 71.6 |
| MsG0880043980.01.T01 | MTR_8g032010 | 47.778 | 90 | 43 | 3 | 20 | 109 | 5 | 90 | 5.43e-15 | 71.2 |
| MsG0880043980.01.T01 | MTR_8g031940 | 45.455 | 99 | 50 | 3 | 24 | 122 | 9 | 103 | 5.58e-15 | 71.2 |
| MsG0880043980.01.T01 | MTR_8g032000 | 50.000 | 86 | 39 | 3 | 24 | 109 | 9 | 90 | 1.21e-14 | 70.5 |
| MsG0880043980.01.T01 | MTR_8g031960 | 48.276 | 87 | 41 | 3 | 23 | 109 | 9 | 91 | 1.93e-14 | 69.7 |
| MsG0880043980.01.T01 | MTR_3g079320 | 50.000 | 86 | 38 | 3 | 24 | 109 | 13 | 93 | 3.42e-14 | 69.3 |
| MsG0880043980.01.T01 | MTR_2g060850 | 45.570 | 79 | 39 | 2 | 96 | 174 | 215 | 289 | 4.39e-14 | 68.9 |
| MsG0880043980.01.T01 | MTR_8g031900 | 48.837 | 86 | 40 | 3 | 24 | 109 | 9 | 90 | 6.24e-14 | 68.2 |
| MsG0880043980.01.T01 | MTR_8g031910 | 39.706 | 136 | 64 | 6 | 19 | 145 | 4 | 130 | 8.19e-14 | 67.8 |
| MsG0880043980.01.T01 | MTR_8g031850 | 35.404 | 161 | 85 | 6 | 24 | 170 | 9 | 164 | 1.17e-13 | 67.0 |
| MsG0880043980.01.T01 | MTR_8g031990 | 46.667 | 90 | 44 | 3 | 20 | 109 | 5 | 90 | 1.54e-13 | 67.4 |
| MsG0880043980.01.T01 | MTR_7g106800 | 44.318 | 88 | 46 | 2 | 24 | 109 | 11 | 97 | 2.15e-13 | 66.6 |
| MsG0880043980.01.T01 | MTR_7g076665 | 46.512 | 86 | 43 | 2 | 24 | 109 | 9 | 91 | 4.78e-13 | 65.9 |
| MsG0880043980.01.T01 | MTR_8g032020 | 47.674 | 86 | 41 | 3 | 24 | 109 | 10 | 91 | 5.56e-13 | 65.9 |
| MsG0880043980.01.T01 | MTR_0089s0100 | 51.020 | 49 | 24 | 0 | 126 | 174 | 18 | 66 | 1.60e-12 | 60.8 |
| MsG0880043980.01.T01 | MTR_0089s0100 | 51.020 | 49 | 24 | 0 | 126 | 174 | 18 | 66 | 1.85e-12 | 60.8 |
| MsG0880043980.01.T01 | MTR_3g036000 | 51.020 | 49 | 24 | 0 | 126 | 174 | 53 | 101 | 3.09e-12 | 60.8 |
| MsG0880043980.01.T01 | MTR_0089s0100 | 51.020 | 49 | 24 | 0 | 126 | 174 | 51 | 99 | 6.56e-12 | 60.1 |
| MsG0880043980.01.T01 | MTR_4g056250 | 73.171 | 41 | 4 | 1 | 141 | 174 | 22 | 62 | 1.11e-11 | 58.2 |
| MsG0880043980.01.T01 | MTR_6g059800 | 48.980 | 49 | 25 | 0 | 126 | 174 | 18 | 66 | 1.44e-11 | 58.5 |
| MsG0880043980.01.T01 | MTR_6g059800 | 48.980 | 49 | 25 | 0 | 126 | 174 | 49 | 97 | 3.50e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043980.01.T01 | AT3G59710 | 55.238 | 105 | 41 | 4 | 10 | 113 | 6 | 105 | 1.96e-25 | 99.4 |
| MsG0880043980.01.T01 | AT3G59710 | 56.122 | 98 | 38 | 3 | 16 | 113 | 42 | 134 | 8.80e-25 | 98.2 |
| MsG0880043980.01.T01 | AT3G59710 | 55.670 | 97 | 38 | 3 | 17 | 113 | 24 | 115 | 6.39e-24 | 95.5 |
| MsG0880043980.01.T01 | AT5G61830 | 51.579 | 95 | 40 | 3 | 16 | 109 | 31 | 120 | 3.80e-18 | 80.1 |
| MsG0880043980.01.T01 | AT5G61830 | 51.579 | 95 | 40 | 3 | 16 | 109 | 31 | 120 | 3.80e-18 | 80.1 |
| MsG0880043980.01.T01 | AT1G01800 | 48.276 | 87 | 43 | 2 | 23 | 109 | 6 | 90 | 2.09e-16 | 75.1 |
| MsG0880043980.01.T01 | AT2G24190 | 41.176 | 102 | 50 | 4 | 8 | 109 | 6 | 97 | 2.03e-15 | 72.4 |
| MsG0880043980.01.T01 | AT5G51030 | 37.736 | 106 | 60 | 2 | 16 | 121 | 32 | 131 | 3.33e-15 | 72.0 |
| MsG0880043980.01.T01 | AT2G24190 | 43.023 | 86 | 47 | 2 | 24 | 109 | 9 | 92 | 8.60e-15 | 70.9 |
| MsG0880043980.01.T01 | AT3G61220 | 45.349 | 86 | 45 | 2 | 24 | 109 | 9 | 92 | 1.26e-14 | 70.5 |
| MsG0880043980.01.T01 | AT3G61220 | 45.349 | 86 | 45 | 2 | 24 | 109 | 16 | 99 | 1.36e-14 | 70.5 |
| MsG0880043980.01.T01 | AT3G61220 | 45.349 | 86 | 45 | 2 | 24 | 109 | 40 | 123 | 1.75e-14 | 70.1 |
| MsG0880043980.01.T01 | AT4G09750 | 36.735 | 98 | 54 | 2 | 25 | 122 | 47 | 136 | 4.02e-11 | 60.8 |
Find 48 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCCTTCAAAGACAAATT+TGG | 0.232306 | 8:+33738499 | MsG0880043980.01.T01:CDS |
| GATGATTTGCCTGCTTGTTT+TGG | 0.234847 | 8:+33740142 | MsG0880043980.01.T01:three_prime_UTR |
| TGAAATGACACCATTCTTCT+TGG | 0.249236 | 8:-33739882 | None:intergenic |
| GGAGGAGAGTGAACGAAATT+TGG | 0.263625 | 8:+33740111 | MsG0880043980.01.T01:three_prime_UTR |
| TATCTATGTTAACATGTTAT+AGG | 0.286236 | 8:+33740264 | MsG0880043980.01.T01:three_prime_UTR |
| TAGTGTACTCGCCAAGAAAA+TGG | 0.319270 | 8:+33739643 | MsG0880043980.01.T01:intron |
| ATAAACATCAAAATCTTCTA+TGG | 0.347106 | 8:-33740212 | None:intergenic |
| AGTGCAGGAGAAGGAAAATA+AGG | 0.378888 | 8:-33738131 | None:intergenic |
| GGCTCCAAATTTGTCTTTGA+AGG | 0.388365 | 8:-33738503 | None:intergenic |
| AAGAAAATGGTATAGATTGC+AGG | 0.397467 | 8:+33739656 | MsG0880043980.01.T01:CDS |
| GAGAGCATTCGAGCACAATT+AGG | 0.410670 | 8:+33738403 | MsG0880043980.01.T01:CDS |
| GAGACGGTGGCGGTGGTGAC+CGG | 0.423762 | 8:+33738277 | MsG0880043980.01.T01:CDS |
| ATAAATTTAACAACATATCA+TGG | 0.435583 | 8:+33739521 | MsG0880043980.01.T01:CDS |
| GGAGAAGGAAAATAAGGTTC+TGG | 0.450582 | 8:-33738125 | None:intergenic |
| CCGGAGGTAACAAGGGCATT+GGG | 0.462430 | 8:+33738296 | MsG0880043980.01.T01:CDS |
| ACTGCTAGAGACAAGCAAAA+AGG | 0.463408 | 8:+33738367 | MsG0880043980.01.T01:CDS |
| TATATTACTAAACCTGTACT+TGG | 0.468946 | 8:-33739546 | None:intergenic |
| GGTGGTGACCGGAGGTAACA+AGG | 0.481342 | 8:+33738288 | MsG0880043980.01.T01:CDS |
| CTCCTGCACTTTGCTCAACC+AGG | 0.481741 | 8:+33738144 | MsG0880043980.01.T01:CDS |
| GTCTTTGAAGGAGGATGCAA+AGG | 0.489278 | 8:-33738491 | None:intergenic |
| ACCGGAGGTAACAAGGGCAT+TGG | 0.496161 | 8:+33738295 | MsG0880043980.01.T01:CDS |
| CCCAATGCCCTTGTTACCTC+CGG | 0.499855 | 8:-33738296 | None:intergenic |
| GTCGAAGGAGACGGTGGCGG+TGG | 0.502526 | 8:+33738270 | MsG0880043980.01.T01:CDS |
| TACAGGTATTTCGCTCTGCA+AGG | 0.508638 | 8:+33739479 | MsG0880043980.01.T01:intron |
| TAAGAGAAATCCAAGAAGAA+TGG | 0.512769 | 8:+33739872 | MsG0880043980.01.T01:three_prime_UTR |
| ACTAAACGAGATTCGAAAGC+TGG | 0.514413 | 8:+33739720 | MsG0880043980.01.T01:CDS |
| AGACAAATTTGGAGCCACCT+TGG | 0.518797 | 8:+33738510 | MsG0880043980.01.T01:CDS |
| TCCAAATTTGTCTTTGAAGG+AGG | 0.528089 | 8:-33738500 | None:intergenic |
| CATATCATGGGTCCAAGTAC+AGG | 0.531891 | 8:+33739534 | MsG0880043980.01.T01:CDS |
| GTCGTCGAAGGAGACGGTGG+CGG | 0.538047 | 8:+33738267 | MsG0880043980.01.T01:CDS |
| TACCTGGTTGAGCAAAGTGC+AGG | 0.547617 | 8:-33738146 | None:intergenic |
| ATGTTAACATAGATATCTCT+AGG | 0.560248 | 8:-33740256 | None:intergenic |
| AATCAACATCTGAGACATCA+AGG | 0.568702 | 8:-33738459 | None:intergenic |
| TAAATTTAACAACATATCAT+GGG | 0.570631 | 8:+33739522 | MsG0880043980.01.T01:CDS |
| ACAGGTATTTCGCTCTGCAA+GGG | 0.570858 | 8:+33739480 | MsG0880043980.01.T01:intron |
| ATTGCAGGTACTTTGTGATG+AGG | 0.574110 | 8:+33739671 | MsG0880043980.01.T01:CDS |
| TGAATGAAGGTGGTCGTCGA+AGG | 0.587089 | 8:+33738255 | MsG0880043980.01.T01:intron |
| ACGGTGGCGGTGGTGACCGG+AGG | 0.596513 | 8:+33738280 | MsG0880043980.01.T01:CDS |
| GTGGTGACCGGAGGTAACAA+GGG | 0.601388 | 8:+33738289 | MsG0880043980.01.T01:CDS |
| GTTGAGCAAAGTGCAGGAGA+AGG | 0.605589 | 8:-33738140 | None:intergenic |
| AATACATACGAGAATATCCA+AGG | 0.618479 | 8:-33738527 | None:intergenic |
| ATTCAGGTGGAGGATTCAAG+TGG | 0.634957 | 8:+33740090 | MsG0880043980.01.T01:intron |
| CAGGTGGAGGATTCAAGTGG+AGG | 0.641521 | 8:+33740093 | MsG0880043980.01.T01:intron |
| ACTAGAAAGTGAACATGATG+AGG | 0.645794 | 8:-33738436 | None:intergenic |
| AAGGTGGTCGTCGAAGGAGA+CGG | 0.648614 | 8:+33738261 | MsG0880043980.01.T01:intron |
| GAACATGATGAGGTGCAACA+AGG | 0.658083 | 8:-33738426 | None:intergenic |
| GTGGTCGTCGAAGGAGACGG+TGG | 0.665530 | 8:+33738264 | MsG0880043980.01.T01:CDS |
| ACATACGAGAATATCCAAGG+TGG | 0.779700 | 8:-33738524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAATCAAACATATATA+TGG | - | Chr8:33738207-33738226 | None:intergenic | 10.0% |
| !!! | TATATGATATTTTTATGATA+AGG | + | Chr8:33739919-33739938 | MsG0880043980.01.T01:three_prime_UTR | 10.0% |
| !! | AATATAGTATTATTGCTTAA+TGG | + | Chr8:33740052-33740071 | MsG0880043980.01.T01:intron | 15.0% |
| !! | ATAAATTTAACAACATATCA+TGG | + | Chr8:33739521-33739540 | MsG0880043980.01.T01:CDS | 15.0% |
| !! | ATAGACTTATGTATATAAAA+TGG | - | Chr8:33739155-33739174 | None:intergenic | 15.0% |
| !! | ATCGAAAATCATATATTATT+TGG | + | Chr8:33739305-33739324 | MsG0880043980.01.T01:intron | 15.0% |
| !! | ATTAAGTTTATTAAGTAACA+TGG | + | Chr8:33739781-33739800 | MsG0880043980.01.T01:intron | 15.0% |
| !! | TAAATTTAACAACATATCAT+GGG | + | Chr8:33739522-33739541 | MsG0880043980.01.T01:CDS | 15.0% |
| !!! | ATAATATATGATTTTCGATA+TGG | - | Chr8:33739304-33739323 | None:intergenic | 15.0% |
| !!! | ATTAGATACTTTTAAATGTT+AGG | - | Chr8:33738973-33738992 | None:intergenic | 15.0% |
| !!! | ATTCATACACTAATTTTTTA+AGG | - | Chr8:33739581-33739600 | None:intergenic | 15.0% |
| !!! | TAATATATGATTTTCGATAT+GGG | - | Chr8:33739303-33739322 | None:intergenic | 15.0% |
| !!! | TACATACATTTTTTATGATA+TGG | + | Chr8:33740316-33740335 | MsG0880043980.01.T01:three_prime_UTR | 15.0% |
| !!! | TTAGATACTTTTAAATGTTA+GGG | - | Chr8:33738972-33738991 | None:intergenic | 15.0% |
| !! | AATTAAACTATAAGAGTTGA+AGG | - | Chr8:33738935-33738954 | None:intergenic | 20.0% |
| !! | ATAAACATCAAAATCTTCTA+TGG | - | Chr8:33740215-33740234 | None:intergenic | 20.0% |
| !! | TAATCAAAAACAAAGTTTCA+AGG | - | Chr8:33739188-33739207 | None:intergenic | 20.0% |
| !! | TATCTATGTTAACATGTTAT+AGG | + | Chr8:33740264-33740283 | MsG0880043980.01.T01:three_prime_UTR | 20.0% |
| !!! | ATGATATTTTTATGATAAGG+TGG | + | Chr8:33739922-33739941 | MsG0880043980.01.T01:intron | 20.0% |
| !!! | CAAACATATTCTTCATTTTT+GGG | - | Chr8:33739359-33739378 | None:intergenic | 20.0% |
| !!! | TAGATACTTTTAAATGTTAG+GGG | - | Chr8:33738971-33738990 | None:intergenic | 20.0% |
| !!! | TCAAACATATTCTTCATTTT+TGG | - | Chr8:33739360-33739379 | None:intergenic | 20.0% |
| !!! | TGATATTTTTATGATAAGGT+GGG | + | Chr8:33739923-33739942 | MsG0880043980.01.T01:intron | 20.0% |
| ! | AATTGAAGTAGAACAAGAAT+TGG | + | Chr8:33739067-33739086 | MsG0880043980.01.T01:intron | 25.0% |
| ! | AGAAAATCTTCTATAAACGA+TGG | - | Chr8:33739229-33739248 | None:intergenic | 25.0% |
| ! | AGTTGAATTAGGCTAAAATT+AGG | - | Chr8:33738741-33738760 | None:intergenic | 25.0% |
| ! | ATAGTAGGATTGAAAAGATA+AGG | - | Chr8:33738172-33738191 | None:intergenic | 25.0% |
| ! | ATGTTAACATAGATATCTCT+AGG | - | Chr8:33740259-33740278 | None:intergenic | 25.0% |
| ! | TATATTACTAAACCTGTACT+TGG | - | Chr8:33739549-33739568 | None:intergenic | 25.0% |
| ! | TATTTGTGCTAAATGAATGA+AGG | + | Chr8:33738242-33738261 | MsG0880043980.01.T01:intron | 25.0% |
| ! | TTATCATTGTGAAACTAAGA+AGG | - | Chr8:33738656-33738675 | None:intergenic | 25.0% |
| ! | TTCACAATGATAAACATGTT+TGG | + | Chr8:33738663-33738682 | MsG0880043980.01.T01:intron | 25.0% |
| ! | TTCATATAGTCATTGAGTAA+TGG | - | Chr8:33739333-33739352 | None:intergenic | 25.0% |
| !! | AGATACTTTTAAATGTTAGG+GGG | - | Chr8:33738970-33738989 | None:intergenic | 25.0% |
| !! | TATATTTTGTAGAGTTCTAC+AGG | + | Chr8:33739462-33739481 | MsG0880043980.01.T01:intron | 25.0% |
| !!! | CTCAATTTATTTTGTGCTTA+GGG | + | Chr8:33738825-33738844 | MsG0880043980.01.T01:intron | 25.0% |
| !!! | GTGTTTTTTCGTATATATTC+AGG | + | Chr8:33740074-33740093 | MsG0880043980.01.T01:intron | 25.0% |
| !!! | TCAATTTATTTTGTGCTTAG+GGG | + | Chr8:33738826-33738845 | MsG0880043980.01.T01:intron | 25.0% |
| !!! | TTTTTTCGTATATATTCAGG+TGG | + | Chr8:33740077-33740096 | MsG0880043980.01.T01:intron | 25.0% |
| AAACACAGAAGAGTTGAATT+AGG | - | Chr8:33738752-33738771 | None:intergenic | 30.0% | |
| AAGAAAATGGTATAGATTGC+AGG | + | Chr8:33739656-33739675 | MsG0880043980.01.T01:CDS | 30.0% | |
| AATACATACGAGAATATCCA+AGG | - | Chr8:33738530-33738549 | None:intergenic | 30.0% | |
| ATAAACGATGGTAACAAGTT+AGG | - | Chr8:33739217-33739236 | None:intergenic | 30.0% | |
| TAACACCAATGATATTCGAT+GGG | - | Chr8:33739048-33739067 | None:intergenic | 30.0% | |
| TAACTTTGACATTTGTGTAG+TGG | + | Chr8:33739252-33739271 | MsG0880043980.01.T01:intron | 30.0% | |
| TAAGAGAAATCCAAGAAGAA+TGG | + | Chr8:33739872-33739891 | MsG0880043980.01.T01:three_prime_UTR | 30.0% | |
| TGGCATTAAATGTGTATAGT+AGG | - | Chr8:33738187-33738206 | None:intergenic | 30.0% | |
| TTAACACCAATGATATTCGA+TGG | - | Chr8:33739049-33739068 | None:intergenic | 30.0% | |
| ! | AATGACACATTTGTTACTAG+AGG | - | Chr8:33738619-33738638 | None:intergenic | 30.0% |
| ! | CTCAATATATTTGCTAGAAG+TGG | + | Chr8:33739956-33739975 | MsG0880043980.01.T01:intron | 30.0% |
| ! | TGCAATCTATACCATTTTCT+TGG | - | Chr8:33739657-33739676 | None:intergenic | 30.0% |
| !!! | CAATTTATTTTGTGCTTAGG+GGG | + | Chr8:33738827-33738846 | MsG0880043980.01.T01:intron | 30.0% |
| !!! | GCTCAATTTATTTTGTGCTT+AGG | + | Chr8:33738824-33738843 | MsG0880043980.01.T01:intron | 30.0% |
| AACACCAATGATATTCGATG+GGG | - | Chr8:33739047-33739066 | None:intergenic | 35.0% | |
| ACTAGAAAGTGAACATGATG+AGG | - | Chr8:33738439-33738458 | None:intergenic | 35.0% | |
| AGAATTGGTCAAAGCATACA+TGG | + | Chr8:33739082-33739101 | MsG0880043980.01.T01:intron | 35.0% | |
| TCCTCCTTCAAAGACAAATT+TGG | + | Chr8:33738499-33738518 | MsG0880043980.01.T01:CDS | 35.0% | |
| TGAAATGACACCATTCTTCT+TGG | - | Chr8:33739885-33739904 | None:intergenic | 35.0% | |
| TTGTGCTAAATGAATGAAGG+TGG | + | Chr8:33738245-33738264 | MsG0880043980.01.T01:intron | 35.0% | |
| TTTCGTATATATTCAGGTGG+AGG | + | Chr8:33740080-33740099 | MsG0880043980.01.T01:intron | 35.0% | |
| ! | AATCAACATCTGAGACATCA+AGG | - | Chr8:33738462-33738481 | None:intergenic | 35.0% |
| ! | CATTTTTACCCAAAACAAGC+AGG | - | Chr8:33740154-33740173 | None:intergenic | 35.0% |
| ! | GATTGAAAAGATAAGGTACC+TGG | - | Chr8:33738165-33738184 | None:intergenic | 35.0% |
| ! | TCCAAATTTGTCTTTGAAGG+AGG | - | Chr8:33738503-33738522 | None:intergenic | 35.0% |
| !! | ACATTTGTGTAGTGGACATT+GGG | + | Chr8:33739260-33739279 | MsG0880043980.01.T01:intron | 35.0% |
| !! | ATGATTTGCCTGCTTGTTTT+GGG | + | Chr8:33740143-33740162 | MsG0880043980.01.T01:three_prime_UTR | 35.0% |
| ACACCAATGATATTCGATGG+GGG | - | Chr8:33739046-33739065 | None:intergenic | 40.0% | |
| ACATACGAGAATATCCAAGG+TGG | - | Chr8:33738527-33738546 | None:intergenic | 40.0% | |
| ACTAAACGAGATTCGAAAGC+TGG | + | Chr8:33739720-33739739 | MsG0880043980.01.T01:CDS | 40.0% | |
| ACTGCTAGAGACAAGCAAAA+AGG | + | Chr8:33738367-33738386 | MsG0880043980.01.T01:CDS | 40.0% | |
| AGTGCAGGAGAAGGAAAATA+AGG | - | Chr8:33738134-33738153 | None:intergenic | 40.0% | |
| ATTGCAGGTACTTTGTGATG+AGG | + | Chr8:33739671-33739690 | MsG0880043980.01.T01:CDS | 40.0% | |
| GGAGAAGGAAAATAAGGTTC+TGG | - | Chr8:33738128-33738147 | None:intergenic | 40.0% | |
| GGCTCCAAATTTGTCTTTGA+AGG | - | Chr8:33738506-33738525 | None:intergenic | 40.0% | |
| GGTCAAAGCATACATGGTTA+AGG | + | Chr8:33739088-33739107 | MsG0880043980.01.T01:intron | 40.0% | |
| TAGAGACAAGCAAAAAGGAG+AGG | + | Chr8:33738372-33738391 | MsG0880043980.01.T01:CDS | 40.0% | |
| TAGTGTACTCGCCAAGAAAA+TGG | + | Chr8:33739643-33739662 | MsG0880043980.01.T01:intron | 40.0% | |
| ! | GACACATTTGTTACTAGAGG+TGG | - | Chr8:33738616-33738635 | None:intergenic | 40.0% |
| ! | GTGAAACGTTTTGCTGAGTT+GGG | + | Chr8:33738328-33738347 | MsG0880043980.01.T01:CDS | 40.0% |
| ! | TGTGAAACGTTTTGCTGAGT+TGG | + | Chr8:33738327-33738346 | MsG0880043980.01.T01:CDS | 40.0% |
| !! | GACATTTGTGTAGTGGACAT+TGG | + | Chr8:33739259-33739278 | MsG0880043980.01.T01:intron | 40.0% |
| !! | GATGATTTGCCTGCTTGTTT+TGG | + | Chr8:33740142-33740161 | MsG0880043980.01.T01:three_prime_UTR | 40.0% |
| ACAGGTATTTCGCTCTGCAA+GGG | + | Chr8:33739480-33739499 | MsG0880043980.01.T01:intron | 45.0% | |
| ATCCCCCCATCGAATATCAT+TGG | + | Chr8:33739040-33739059 | MsG0880043980.01.T01:intron | 45.0% | |
| ATTCAGGTGGAGGATTCAAG+TGG | + | Chr8:33740090-33740109 | MsG0880043980.01.T01:intron | 45.0% | |
| CACCAATGATATTCGATGGG+GGG | - | Chr8:33739045-33739064 | None:intergenic | 45.0% | |
| CATATCATGGGTCCAAGTAC+AGG | + | Chr8:33739534-33739553 | MsG0880043980.01.T01:CDS | 45.0% | |
| GAACATGATGAGGTGCAACA+AGG | - | Chr8:33738429-33738448 | None:intergenic | 45.0% | |
| GGAGGAGAGTGAACGAAATT+TGG | + | Chr8:33740111-33740130 | MsG0880043980.01.T01:three_prime_UTR | 45.0% | |
| TACAGGTATTTCGCTCTGCA+AGG | + | Chr8:33739479-33739498 | MsG0880043980.01.T01:intron | 45.0% | |
| TATTCGATGGGGGGATAAGA+AGG | - | Chr8:33739036-33739055 | None:intergenic | 45.0% | |
| ! | AGACAAATTTGGAGCCACCT+TGG | + | Chr8:33738510-33738529 | MsG0880043980.01.T01:CDS | 45.0% |
| ! | GTCTTTGAAGGAGGATGCAA+AGG | - | Chr8:33738494-33738513 | None:intergenic | 45.0% |
| !! | GAGAGCATTCGAGCACAATT+AGG | + | Chr8:33738403-33738422 | MsG0880043980.01.T01:CDS | 45.0% |
| GCAAAAAGGAGAGGATGCTG+TGG | + | Chr8:33738381-33738400 | MsG0880043980.01.T01:CDS | 50.0% | |
| GTTGAGCAAAGTGCAGGAGA+AGG | - | Chr8:33738143-33738162 | None:intergenic | 50.0% | |
| TACCTGGTTGAGCAAAGTGC+AGG | - | Chr8:33738149-33738168 | None:intergenic | 50.0% | |
| TGAATGAAGGTGGTCGTCGA+AGG | + | Chr8:33738255-33738274 | MsG0880043980.01.T01:intron | 50.0% | |
| AAGGTGGTCGTCGAAGGAGA+CGG | + | Chr8:33738261-33738280 | MsG0880043980.01.T01:intron | 55.0% | |
| CAGGTGGAGGATTCAAGTGG+AGG | + | Chr8:33740093-33740112 | MsG0880043980.01.T01:intron | 55.0% | |
| CCCAATGCCCTTGTTACCTC+CGG | - | Chr8:33738299-33738318 | None:intergenic | 55.0% | |
| CTCCTGCACTTTGCTCAACC+AGG | + | Chr8:33738144-33738163 | MsG0880043980.01.T01:CDS | 55.0% | |
| GTGGTGACCGGAGGTAACAA+GGG | + | Chr8:33738289-33738308 | MsG0880043980.01.T01:CDS | 55.0% | |
| ! | ACCGGAGGTAACAAGGGCAT+TGG | + | Chr8:33738295-33738314 | MsG0880043980.01.T01:CDS | 55.0% |
| !! | CCGGAGGTAACAAGGGCATT+GGG | + | Chr8:33738296-33738315 | MsG0880043980.01.T01:CDS | 55.0% |
| !! | TGCGCGACACTGATTTCGCA+AGG | + | Chr8:33739003-33739022 | MsG0880043980.01.T01:intron | 55.0% |
| GGTGGTGACCGGAGGTAACA+AGG | + | Chr8:33738288-33738307 | MsG0880043980.01.T01:CDS | 60.0% | |
| GTCGTCGAAGGAGACGGTGG+CGG | + | Chr8:33738267-33738286 | MsG0880043980.01.T01:CDS | 65.0% | |
| GTGGTCGTCGAAGGAGACGG+TGG | + | Chr8:33738264-33738283 | MsG0880043980.01.T01:CDS | 65.0% | |
| ! | GAGACGGTGGCGGTGGTGAC+CGG | + | Chr8:33738277-33738296 | MsG0880043980.01.T01:CDS | 70.0% |
| ! | GTCGAAGGAGACGGTGGCGG+TGG | + | Chr8:33738270-33738289 | MsG0880043980.01.T01:CDS | 70.0% |
| ! | ACGGTGGCGGTGGTGACCGG+AGG | + | Chr8:33738280-33738299 | MsG0880043980.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 33738119 | 33740351 | 33738119 | ID=MsG0880043980.01;Name=MsG0880043980.01 |
| Chr8 | mRNA | 33738119 | 33740351 | 33738119 | ID=MsG0880043980.01.T01;Parent=MsG0880043980.01;Name=MsG0880043980.01.T01;_AED=0.50;_eAED=0.69;_QI=0|0.6|0.5|1|0.8|0.66|6|335|174 |
| Chr8 | exon | 33738119 | 33738165 | 33738119 | ID=MsG0880043980.01.T01:exon:10075;Parent=MsG0880043980.01.T01 |
| Chr8 | exon | 33738264 | 33738540 | 33738264 | ID=MsG0880043980.01.T01:exon:10076;Parent=MsG0880043980.01.T01 |
| Chr8 | exon | 33739484 | 33739555 | 33739484 | ID=MsG0880043980.01.T01:exon:10077;Parent=MsG0880043980.01.T01 |
| Chr8 | exon | 33739646 | 33739741 | 33739646 | ID=MsG0880043980.01.T01:exon:10078;Parent=MsG0880043980.01.T01 |
| Chr8 | exon | 33739829 | 33739940 | 33739829 | ID=MsG0880043980.01.T01:exon:10079;Parent=MsG0880043980.01.T01 |
| Chr8 | exon | 33740096 | 33740351 | 33740096 | ID=MsG0880043980.01.T01:exon:10080;Parent=MsG0880043980.01.T01 |
| Chr8 | CDS | 33738119 | 33738165 | 33738119 | ID=MsG0880043980.01.T01:cds;Parent=MsG0880043980.01.T01 |
| Chr8 | CDS | 33738264 | 33738540 | 33738264 | ID=MsG0880043980.01.T01:cds;Parent=MsG0880043980.01.T01 |
| Chr8 | CDS | 33739484 | 33739555 | 33739484 | ID=MsG0880043980.01.T01:cds;Parent=MsG0880043980.01.T01 |
| Chr8 | CDS | 33739646 | 33739741 | 33739646 | ID=MsG0880043980.01.T01:cds;Parent=MsG0880043980.01.T01 |
| Chr8 | CDS | 33739829 | 33739861 | 33739829 | ID=MsG0880043980.01.T01:cds;Parent=MsG0880043980.01.T01 |
| Chr8 | three_prime_UTR | 33739862 | 33739940 | 33739862 | ID=MsG0880043980.01.T01:three_prime_utr;Parent=MsG0880043980.01.T01 |
| Chr8 | three_prime_UTR | 33740096 | 33740351 | 33740096 | ID=MsG0880043980.01.T01:three_prime_utr;Parent=MsG0880043980.01.T01 |
| Gene Sequence |
| Protein sequence |
