AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045108.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045108.01.T01 MTR_6g039060 35.714 392 202 7 24 370 19 405 2.89e-72 237
MsG0880045108.01.T01 MTR_3g047490 39.521 334 155 6 1 298 1 323 1.33e-71 228
MsG0880045108.01.T01 MTR_5g049460 32.379 454 244 11 24 426 19 460 3.33e-66 219
MsG0880045108.01.T01 MTR_0010s0130 43.426 251 137 2 24 270 19 268 4.49e-63 215
MsG0880045108.01.T01 MTR_0752s0020 38.745 271 137 5 1 266 1 247 8.49e-58 200
MsG0880045108.01.T01 MTR_6g052660 31.702 470 232 15 34 426 6 463 6.56e-56 196
MsG0880045108.01.T01 MTR_0195s0040 30.063 479 270 12 14 432 13 486 1.37e-54 192
MsG0880045108.01.T01 MTR_4g053915 33.837 331 170 6 26 314 25 348 6.75e-51 180
MsG0880045108.01.T01 MTR_7g068680 31.990 397 227 10 26 393 25 407 9.70e-49 171
MsG0880045108.01.T01 MTR_4g119430 34.286 315 164 7 26 301 24 334 1.27e-48 176
MsG0880045108.01.T01 MTR_0387s0030 31.920 401 182 9 1 365 1 346 2.52e-48 176
MsG0880045108.01.T01 MTR_6g047410 30.655 473 248 15 26 428 24 486 3.57e-48 177
MsG0880045108.01.T01 MTR_3g048350 31.373 408 207 12 34 380 6 401 1.28e-47 175
MsG0880045108.01.T01 MTR_1465s0010 33.542 319 139 8 26 305 13 297 1.71e-47 169
MsG0880045108.01.T01 MTR_7g009270 33.968 315 165 7 26 301 25 335 3.13e-47 174
MsG0880045108.01.T01 MTR_7g099763 38.340 253 148 4 26 270 24 276 4.44e-47 164
MsG0880045108.01.T01 MTR_0132s0050 31.692 467 199 14 1 423 1 391 9.17e-47 168
MsG0880045108.01.T01 MTR_5g084777 38.846 260 141 7 26 272 24 278 1.36e-46 172
MsG0880045108.01.T01 MTR_1g053665 37.063 286 155 7 80 357 24 292 2.07e-46 164
MsG0880045108.01.T01 MTR_5g459570 38.132 257 143 5 26 270 24 276 4.09e-46 169
MsG0880045108.01.T01 MTR_6g471790 37.838 259 145 5 26 272 24 278 9.32e-46 170
MsG0880045108.01.T01 MTR_8g012072 37.838 259 145 5 26 272 24 278 1.07e-45 170
MsG0880045108.01.T01 MTR_0133s0060 37.838 259 145 5 26 272 24 278 1.10e-45 170
MsG0880045108.01.T01 MTR_8g087757 37.838 259 145 5 26 272 24 278 1.30e-45 169
MsG0880045108.01.T01 MTR_5g056945 35.185 270 162 4 1 262 1 265 1.58e-45 160
MsG0880045108.01.T01 MTR_0454s0020 31.593 364 198 8 36 351 147 507 1.74e-45 166
MsG0880045108.01.T01 MTR_3g436570 37.838 259 145 5 26 272 24 278 1.96e-45 169
MsG0880045108.01.T01 MTR_7g024373 37.452 259 146 5 26 272 24 278 1.12e-44 167
MsG0880045108.01.T01 MTR_6g049080 32.390 318 148 5 24 314 19 296 1.13e-44 160
MsG0880045108.01.T01 MTR_0547s0010 32.919 322 166 7 113 392 1 314 1.69e-44 161
MsG0880045108.01.T01 MTR_4g046907 32.919 322 166 7 113 392 1 314 1.99e-44 161
MsG0880045108.01.T01 MTR_0015s0160 31.210 314 173 6 26 300 25 334 4.80e-41 153
MsG0880045108.01.T01 MTR_6g033905 32.026 306 132 6 26 301 25 284 6.84e-40 150
MsG0880045108.01.T01 MTR_0322s0040 27.317 410 216 10 26 388 25 399 8.95e-34 131
MsG0880045108.01.T01 MTR_8g468090 28.659 328 173 9 68 351 2 312 1.54e-32 129
MsG0880045108.01.T01 MTR_6g464050 27.335 439 233 15 14 432 13 385 2.10e-32 131
MsG0880045108.01.T01 MTR_3g450160 33.654 208 126 3 72 270 1 205 4.52e-32 129
MsG0880045108.01.T01 MTR_7g027027 40.341 176 96 5 26 193 24 198 1.30e-28 111
MsG0880045108.01.T01 MTR_5g056860 27.312 465 203 17 26 424 25 420 2.55e-27 115
MsG0880045108.01.T01 MTR_0324s0040 27.931 290 161 6 106 351 10 295 4.31e-27 111
MsG0880045108.01.T01 MTR_0002s0140 43.796 137 73 1 24 156 19 155 1.86e-26 107
MsG0880045108.01.T01 MTR_7g038780 24.234 359 207 10 26 342 25 360 1.12e-24 106
MsG0880045108.01.T01 MTR_1g099290 27.304 293 128 9 62 321 320 560 3.81e-22 99.4
MsG0880045108.01.T01 MTR_7g045830 31.429 245 128 3 30 270 1 209 1.14e-21 96.7
MsG0880045108.01.T01 MTR_5g049140 30.164 305 141 12 183 425 1 295 5.72e-20 92.8
MsG0880045108.01.T01 MTR_0450s0010 31.288 163 79 3 183 314 1 161 2.25e-19 89.4
MsG0880045108.01.T01 MTR_3g047110 43.056 72 38 1 204 275 30 98 1.62e-18 84.7
MsG0880045108.01.T01 MTR_3g436840 48.980 98 47 2 1 98 1 95 2.87e-17 84.0
MsG0880045108.01.T01 MTR_1g052035 26.627 169 95 3 175 314 99 267 7.48e-15 75.5
MsG0880045108.01.T01 MTR_1g052035 39.394 99 55 2 1 99 1 94 9.94e-11 62.8
MsG0880045108.01.T01 MTR_1g423950 42.466 73 42 0 26 98 24 96 2.15e-13 67.0
MsG0880045108.01.T01 MTR_3g040210 43.902 82 44 1 20 99 4 85 7.81e-13 70.5
MsG0880045108.01.T01 MTR_3g031890 41.463 82 44 3 26 104 25 105 3.55e-12 64.3
MsG0880045108.01.T01 MTR_1638s0010 27.111 225 113 6 235 424 1 209 5.91e-12 67.0
MsG0880045108.01.T01 MTR_3g035410 30.573 157 72 3 235 357 1 154 3.02e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 107 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTAGTGCTTTCGTTTA+TGG 0.073858 8:+54340069 None:intergenic
GGACTTTCCTCCCATCTTTA+AGG 0.153003 8:-54339821 MsG0880045108.01.T01:CDS
TGACTCTACTTGAACTATTA+AGG 0.226667 8:+54340675 None:intergenic
CTTCCTTCCTGACTATTTCT+TGG 0.228529 8:+54340323 None:intergenic
GCCTTCTTCTTCTTCAGCTT+GGG 0.265675 8:+54339410 None:intergenic
GAGATGATCCATTACATATC+TGG 0.266953 8:+54340099 None:intergenic
AGGTTACTACAACTCTCTTC+TGG 0.284802 8:-54340287 MsG0880045108.01.T01:CDS
GAGTATTTCAAGATGCTAAA+TGG 0.300004 8:-54340580 MsG0880045108.01.T01:CDS
TGAACTTGGTCAAGGACTTT+TGG 0.305016 8:-54340546 MsG0880045108.01.T01:CDS
CTGCTGAAACTGAGATAATC+AGG 0.323360 8:-54339843 MsG0880045108.01.T01:CDS
AAGGAAGATGTCCTGCTAAA+AGG 0.323997 8:-54340307 MsG0880045108.01.T01:CDS
ACGTCCTCAGTGATGGTTAT+AGG 0.334141 8:+54340385 None:intergenic
AAGCAAAGCGTATCAGAATC+TGG 0.338583 8:-54340739 MsG0880045108.01.T01:CDS
CATTTGATAGCTTAGAAATA+AGG 0.347561 8:-54340426 MsG0880045108.01.T01:CDS
CTGGCCTTCTTTCCTTTAGT+AGG 0.350006 8:+54339607 None:intergenic
AGCCTTCTTCTTCTTCAGCT+TGG 0.352894 8:+54339409 None:intergenic
CCTGTTTCTATCAAGGAAAA+AGG 0.356420 8:-54339556 MsG0880045108.01.T01:CDS
GCTAGCTTCTGTTGGTTGTT+GGG 0.363964 8:+54340160 None:intergenic
TGCTAGCTTCTGTTGGTTGT+TGG 0.366897 8:+54340159 None:intergenic
TTCTGATTCAGAACTAGTTC+TGG 0.370653 8:+54339636 None:intergenic
TTCTGACTCAGTACTAGTTC+TGG 0.378125 8:+54339588 None:intergenic
GCTTCTGTTGGTTGTTGGGT+TGG 0.395902 8:+54340164 None:intergenic
ACGTTATAGCTAAAGCTTGT+AGG 0.401395 8:-54340366 MsG0880045108.01.T01:CDS
CTGAAATCTTTCATCAAGGA+AGG 0.411401 8:-54340012 MsG0880045108.01.T01:CDS
AGAGTCACTTTCCTTAAAGA+TGG 0.416859 8:+54339810 None:intergenic
CTGATGCACCTGAAGGGAAA+AGG 0.432261 8:-54339660 MsG0880045108.01.T01:CDS
AAACAAGCGGGGTCAAAGAA+AGG 0.433658 8:-54340478 MsG0880045108.01.T01:CDS
GAAGATTCCAAGAAATAGTC+AGG 0.435830 8:-54340330 MsG0880045108.01.T01:CDS
AGTATTTCAAGATGCTAAAT+GGG 0.444412 8:-54340579 MsG0880045108.01.T01:CDS
GGTTACTACAACTCTCTTCT+GGG 0.459886 8:-54340286 MsG0880045108.01.T01:CDS
GGAGGAAGATGCGAGGTCTC+AGG 0.460578 8:-54339752 MsG0880045108.01.T01:CDS
GAGGAAGCTGCTCTTGCTAA+AGG 0.460692 8:-54339730 MsG0880045108.01.T01:CDS
ATGTAATGGATCATCTCTGC+TGG 0.475466 8:-54340093 MsG0880045108.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 8:-54340413 MsG0880045108.01.T01:CDS
TGCTAAACCTGTTTCTATCA+AGG 0.477409 8:-54339563 MsG0880045108.01.T01:CDS
AGGAAGCTGCTCTTGCTAAA+GGG 0.478652 8:-54339729 MsG0880045108.01.T01:CDS
AGATGATCCATTACATATCT+GGG 0.479286 8:+54340100 None:intergenic
GATTGCTTCTTTCAAAGAGC+AGG 0.488635 8:-54340196 MsG0880045108.01.T01:CDS
TCTAAGCTATCAAATGATGT+AGG 0.490834 8:+54340433 None:intergenic
GAGAAAAGGTAAGGCAGACT+TGG 0.491694 8:-54339491 MsG0880045108.01.T01:CDS
AATCTCCATCTCTGAAGGCT+TGG 0.493755 8:+54340249 None:intergenic
AGAAGACTATGGATATTCCA+TGG 0.493905 8:-54340702 MsG0880045108.01.T01:CDS
AACAAGCGGGGTCAAAGAAA+GGG 0.497240 8:-54340477 MsG0880045108.01.T01:CDS
CTTTCTGAAATCTTTCATCA+AGG 0.500156 8:-54340016 MsG0880045108.01.T01:CDS
TGCTCCTACTAAAGGAAAGA+AGG 0.500403 8:-54339611 MsG0880045108.01.T01:CDS
ATTCCACAGAAGAGGAGAAA+AGG 0.500425 8:-54339505 MsG0880045108.01.T01:CDS
TCAGAAGCTGCTCCTACTAA+AGG 0.501410 8:-54339619 MsG0880045108.01.T01:CDS
AAACTTCCCCAGATATGTAA+TGG 0.502711 8:-54340107 MsG0880045108.01.T01:CDS
TGATGCACCTGAAGGGAAAA+GGG 0.506149 8:-54339659 MsG0880045108.01.T01:CDS
TTCTGACACAGCAACTGCCT+TGG 0.513583 8:+54339693 None:intergenic
GGTAATCACTCAAGAGCAGC+TGG 0.523103 8:-54339470 MsG0880045108.01.T01:CDS
TTGTGAATCTCCATCTCTGA+AGG 0.525037 8:+54340244 None:intergenic
ATCAGTAGCTGAGTACGTCT+TGG 0.528893 8:-54339773 MsG0880045108.01.T01:CDS
TGGGCCAACATATGTGAACT+TGG 0.531084 8:-54340560 MsG0880045108.01.T01:CDS
AGATGCCAAGCCTTCAGAGA+TGG 0.532631 8:-54340254 MsG0880045108.01.T01:CDS
GGAAGAAAACAAGTACCCTA+TGG 0.532902 8:-54340046 MsG0880045108.01.T01:CDS
AGCAAAGCGTATCAGAATCT+GGG 0.533512 8:-54340738 MsG0880045108.01.T01:CDS
TTGACCAAGTTCACATATGT+TGG 0.534216 8:+54340556 None:intergenic
AATAAATTGCTAGCTTCTGT+TGG 0.537457 8:+54340152 None:intergenic
GAGTCACTTTCCTTAAAGAT+GGG 0.539345 8:+54339811 None:intergenic
GGGGTCAAAGAAAGGGAAAA+TGG 0.549767 8:-54340470 MsG0880045108.01.T01:CDS
AGCTATAACGTCCTCAGTGA+TGG 0.550655 8:+54340378 None:intergenic
ACAGAAGAGGAGAAAAGGTA+AGG 0.552019 8:-54339500 MsG0880045108.01.T01:CDS
TTCAGAAAGCAATCTTCCAT+AGG 0.552612 8:+54340030 None:intergenic
TCAGAAAGCAATCTTCCATA+GGG 0.557355 8:+54340031 None:intergenic
TGCTAAAGGGAAAGGCAAGA+AGG 0.557921 8:-54339716 MsG0880045108.01.T01:CDS
TGCTTCTTTCAAAGAGCAGG+AGG 0.557950 8:-54340193 MsG0880045108.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG 0.558761 8:-54339879 MsG0880045108.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 8:-54340412 MsG0880045108.01.T01:CDS
ATTCCAAGAAATAGTCAGGA+AGG 0.562379 8:-54340326 MsG0880045108.01.T01:CDS
AGGGAAAGGCAAGAAGGCCA+AGG 0.562667 8:-54339710 MsG0880045108.01.T01:CDS
TGAAATCTTTCATCAAGGAA+GGG 0.566658 8:-54340011 MsG0880045108.01.T01:intron
CAAGAAGTATGAAGTAAACA+TGG 0.567275 8:-54340632 MsG0880045108.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG 0.567877 8:-54340464 MsG0880045108.01.T01:CDS
AGTAGCTGAGTACGTCTTGG+AGG 0.574153 8:-54339770 MsG0880045108.01.T01:CDS
AAAGTCGTAAGCAAACAAGC+GGG 0.575672 8:-54340490 MsG0880045108.01.T01:CDS
TGAACTATTAAGGATTCCCA+TGG 0.576043 8:+54340685 None:intergenic
GCTGTTTCTGATGCACCTGA+AGG 0.579200 8:-54339667 MsG0880045108.01.T01:CDS
GCTGCTCTTGCTAAAGGGAA+AGG 0.581656 8:-54339724 MsG0880045108.01.T01:CDS
GGAGATTCACAACAGAATGT+TGG 0.585255 8:-54340233 MsG0880045108.01.T01:CDS
ACTCAGCTACTGATTGAACT+AGG 0.585948 8:+54339782 None:intergenic
AAAGGAAAGATGCAGAAGGT+TGG 0.591290 8:-54339538 MsG0880045108.01.T01:CDS
GAAGACTATGGATATTCCAT+GGG 0.592173 8:-54340701 MsG0880045108.01.T01:CDS
AATAGTTCAAGTAGAGTCAC+CGG 0.592431 8:-54340671 MsG0880045108.01.T01:CDS
GCTTGTAGGATGCATGCAGA+GGG 0.594259 8:-54340352 MsG0880045108.01.T01:CDS
CTCTTGAAGAAATAAGAAAG+AGG 0.594566 8:-54339441 MsG0880045108.01.T01:CDS
CTGCTTCTATTCCACAGAAG+AGG 0.602975 8:-54339513 MsG0880045108.01.T01:CDS
TCACTTTCCTTAAAGATGGG+AGG 0.608137 8:+54339814 None:intergenic
ACTACAACTCTCTTCTGGGT+GGG 0.610143 8:-54340282 MsG0880045108.01.T01:CDS
TGTAATGGATCATCTCTGCT+GGG 0.612052 8:-54340092 MsG0880045108.01.T01:CDS
AAGTATGAAGTAAACATGGA+AGG 0.619293 8:-54340628 MsG0880045108.01.T01:CDS
AGCTTGTAGGATGCATGCAG+AGG 0.622944 8:-54340353 MsG0880045108.01.T01:CDS
TGCTGAAACTGAGATAATCA+GGG 0.625436 8:-54339842 MsG0880045108.01.T01:CDS
TTGAGTGAAGCAAAATCCAC+CGG 0.625573 8:+54340652 None:intergenic
GGAAGATGCGAGGTCTCAGG+AGG 0.628698 8:-54339749 MsG0880045108.01.T01:CDS
TTGAAGAAATAAGAAAGAGG+AGG 0.631344 8:-54339438 MsG0880045108.01.T01:CDS
AACATATGTGAACTTGGTCA+AGG 0.631522 8:-54340554 MsG0880045108.01.T01:CDS
GCTTCTTTCAAAGAGCAGGA+GGG 0.637986 8:-54340192 MsG0880045108.01.T01:CDS
AAAAGTCGTAAGCAAACAAG+CGG 0.638533 8:-54340491 MsG0880045108.01.T01:CDS
TACTACAACTCTCTTCTGGG+TGG 0.642887 8:-54340283 MsG0880045108.01.T01:CDS
ATAAACGAAAGCACTACAAG+AGG 0.648175 8:-54340067 MsG0880045108.01.T01:CDS
CTGTTTCTGATGCACCTGAA+GGG 0.666211 8:-54339666 MsG0880045108.01.T01:CDS
GATGATCCATTACATATCTG+GGG 0.671983 8:+54340101 None:intergenic
AAGTCGTAAGCAAACAAGCG+GGG 0.690062 8:-54340489 MsG0880045108.01.T01:CDS
AGTTCAAGTAGAGTCACCGG+TGG 0.701435 8:-54340668 MsG0880045108.01.T01:CDS
ACGTCTTGGAGGAAGATGCG+AGG 0.711757 8:-54339759 MsG0880045108.01.T01:CDS
CATTCCTATAACCATCACTG+AGG 0.778544 8:-54340389 MsG0880045108.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATTTCAAGATGCTAAAT+GGG - Chr8:54339625-54339644 MsG0880045108.01.T01:CDS 25.0%
!! CATTTGATAGCTTAGAAATA+AGG - Chr8:54339778-54339797 MsG0880045108.01.T01:CDS 25.0%
!!! GAAGTTTATCTTTTCAAGAT+TGG + Chr8:54340084-54340103 None:intergenic 25.0%
AAGTATGAAGTAAACATGGA+AGG - Chr8:54339576-54339595 MsG0880045108.01.T01:CDS 30.0%
AGATGATCCATTACATATCT+GGG + Chr8:54340107-54340126 None:intergenic 30.0%
CATCTACAAAAAGAAGACTA+TGG - Chr8:54339491-54339510 MsG0880045108.01.T01:CDS 30.0%
CTCTTGAAGAAATAAGAAAG+AGG - Chr8:54340763-54340782 MsG0880045108.01.T01:CDS 30.0%
GAGTATTTCAAGATGCTAAA+TGG - Chr8:54339624-54339643 MsG0880045108.01.T01:CDS 30.0%
TCTAAGCTATCAAATGATGT+AGG + Chr8:54339774-54339793 None:intergenic 30.0%
TGAAATCTTTCATCAAGGAA+GGG - Chr8:54340193-54340212 MsG0880045108.01.T01:CDS 30.0%
TGACTCTACTTGAACTATTA+AGG + Chr8:54339532-54339551 None:intergenic 30.0%
TTGAAGAAATAAGAAAGAGG+AGG - Chr8:54340766-54340785 MsG0880045108.01.T01:CDS 30.0%
! AATAAATTGCTAGCTTCTGT+TGG + Chr8:54340055-54340074 None:intergenic 30.0%
! CAAGAAGTATGAAGTAAACA+TGG - Chr8:54339572-54339591 MsG0880045108.01.T01:CDS 30.0%
! CATAGTCTTCTTTTTGTAGA+TGG + Chr8:54339493-54339512 None:intergenic 30.0%
!! CTAACCACTTTTCATCTTTA+GGG + Chr8:54340332-54340351 None:intergenic 30.0%
!! CTTTCTGAAATCTTTCATCA+AGG - Chr8:54340188-54340207 MsG0880045108.01.T01:CDS 30.0%
!! TAACCACTTTTCATCTTTAG+GGG + Chr8:54340331-54340350 None:intergenic 30.0%
!! TCTAACCACTTTTCATCTTT+AGG + Chr8:54340333-54340352 None:intergenic 30.0%
AAAAGTCGTAAGCAAACAAG+CGG - Chr8:54339713-54339732 MsG0880045108.01.T01:CDS 35.0%
AAACTTCCCCAGATATGTAA+TGG - Chr8:54340097-54340116 MsG0880045108.01.T01:CDS 35.0%
AAAGAAAGGGAAAATGGTCA+TGG - Chr8:54339740-54339759 MsG0880045108.01.T01:CDS 35.0%
AACATATGTGAACTTGGTCA+AGG - Chr8:54339650-54339669 MsG0880045108.01.T01:CDS 35.0%
AATAGTTCAAGTAGAGTCAC+CGG - Chr8:54339533-54339552 MsG0880045108.01.T01:CDS 35.0%
ACGTTATAGCTAAAGCTTGT+AGG - Chr8:54339838-54339857 MsG0880045108.01.T01:CDS 35.0%
AGAAGACTATGGATATTCCA+TGG - Chr8:54339502-54339521 MsG0880045108.01.T01:CDS 35.0%
ATTCCAAGAAATAGTCAGGA+AGG - Chr8:54339878-54339897 MsG0880045108.01.T01:CDS 35.0%
CTGAAATCTTTCATCAAGGA+AGG - Chr8:54340192-54340211 MsG0880045108.01.T01:CDS 35.0%
GAAGACTATGGATATTCCAT+GGG - Chr8:54339503-54339522 MsG0880045108.01.T01:CDS 35.0%
GAAGATTCCAAGAAATAGTC+AGG - Chr8:54339874-54339893 MsG0880045108.01.T01:CDS 35.0%
GAGATGATCCATTACATATC+TGG + Chr8:54340108-54340127 None:intergenic 35.0%
GATGATCCATTACATATCTG+GGG + Chr8:54340106-54340125 None:intergenic 35.0%
TCAGAAAGCAATCTTCCATA+GGG + Chr8:54340176-54340195 None:intergenic 35.0%
TCTTGTAGTGCTTTCGTTTA+TGG + Chr8:54340138-54340157 None:intergenic 35.0%
TGAACTATTAAGGATTCCCA+TGG + Chr8:54339522-54339541 None:intergenic 35.0%
TGCTGAAACTGAGATAATCA+GGG - Chr8:54340362-54340381 MsG0880045108.01.T01:CDS 35.0%
TGGAGTTCTTAAAAAGGACA+AGG - Chr8:54340219-54340238 MsG0880045108.01.T01:CDS 35.0%
TTCAGAAAGCAATCTTCCAT+AGG + Chr8:54340177-54340196 None:intergenic 35.0%
TTCTGATTCAGAACTAGTTC+TGG + Chr8:54340571-54340590 None:intergenic 35.0%
TTGACCAAGTTCACATATGT+TGG + Chr8:54339651-54339670 None:intergenic 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG - Chr8:54339791-54339810 MsG0880045108.01.T01:CDS 35.0%
! AGAGTCACTTTCCTTAAAGA+TGG + Chr8:54340397-54340416 None:intergenic 35.0%
! AGTTGTAGTAACCTTTTAGC+AGG + Chr8:54339911-54339930 None:intergenic 35.0%
! CCTTTTTCCTTGATAGAAAC+AGG + Chr8:54340651-54340670 None:intergenic 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG - Chr8:54339792-54339811 MsG0880045108.01.T01:CDS 35.0%
! GAGTCACTTTCCTTAAAGAT+GGG + Chr8:54340396-54340415 None:intergenic 35.0%
!! ATAAACGAAAGCACTACAAG+AGG - Chr8:54340137-54340156 MsG0880045108.01.T01:CDS 35.0%
!! CCTGTTTCTATCAAGGAAAA+AGG - Chr8:54340648-54340667 MsG0880045108.01.T01:CDS 35.0%
!! TGCTAAACCTGTTTCTATCA+AGG - Chr8:54340641-54340660 MsG0880045108.01.T01:CDS 35.0%
AAAGGAAAGATGCAGAAGGT+TGG - Chr8:54340666-54340685 MsG0880045108.01.T01:CDS 40.0%
AAAGTCGTAAGCAAACAAGC+GGG - Chr8:54339714-54339733 MsG0880045108.01.T01:CDS 40.0%
AAGCAAAGCGTATCAGAATC+TGG - Chr8:54339465-54339484 MsG0880045108.01.T01:CDS 40.0%
AAGCCCCTAAAGATGAAAAG+TGG - Chr8:54340325-54340344 MsG0880045108.01.T01:CDS 40.0%
AAGGAAGATGTCCTGCTAAA+AGG - Chr8:54339897-54339916 MsG0880045108.01.T01:CDS 40.0%
ACAGAAGAGGAGAAAAGGTA+AGG - Chr8:54340704-54340723 MsG0880045108.01.T01:CDS 40.0%
AGCAAAGCGTATCAGAATCT+GGG - Chr8:54339466-54339485 MsG0880045108.01.T01:CDS 40.0%
AGGTTACTACAACTCTCTTC+TGG - Chr8:54339917-54339936 MsG0880045108.01.T01:intron 40.0%
ATTCCACAGAAGAGGAGAAA+AGG - Chr8:54340699-54340718 MsG0880045108.01.T01:CDS 40.0%
CATTCCTATAACCATCACTG+AGG - Chr8:54339815-54339834 MsG0880045108.01.T01:CDS 40.0%
CTGCTGAAACTGAGATAATC+AGG - Chr8:54340361-54340380 MsG0880045108.01.T01:CDS 40.0%
GATTGCTTCTTTCAAAGAGC+AGG - Chr8:54340008-54340027 MsG0880045108.01.T01:intron 40.0%
GGAAAAAGGAAAGATGCAGA+AGG - Chr8:54340662-54340681 MsG0880045108.01.T01:CDS 40.0%
GGAAGAAAACAAGTACCCTA+TGG - Chr8:54340158-54340177 MsG0880045108.01.T01:CDS 40.0%
GGAGATTCACAACAGAATGT+TGG - Chr8:54339971-54339990 MsG0880045108.01.T01:intron 40.0%
GGTTACTACAACTCTCTTCT+GGG - Chr8:54339918-54339937 MsG0880045108.01.T01:intron 40.0%
TCACTTTCCTTAAAGATGGG+AGG + Chr8:54340393-54340412 None:intergenic 40.0%
TGCTCCTACTAAAGGAAAGA+AGG - Chr8:54340593-54340612 MsG0880045108.01.T01:CDS 40.0%
TTCGAAGTTCTACTGCTGAA+AGG - Chr8:54340260-54340279 MsG0880045108.01.T01:CDS 40.0%
TTCTGACTCAGTACTAGTTC+TGG + Chr8:54340619-54340638 None:intergenic 40.0%
TTGAGTGAAGCAAAATCCAC+CGG + Chr8:54339555-54339574 None:intergenic 40.0%
TTGTGAATCTCCATCTCTGA+AGG + Chr8:54339963-54339982 None:intergenic 40.0%
! ACTCAGCTACTGATTGAACT+AGG + Chr8:54340425-54340444 None:intergenic 40.0%
! CTTCCTTCCTGACTATTTCT+TGG + Chr8:54339884-54339903 None:intergenic 40.0%
! TGAACTTGGTCAAGGACTTT+TGG - Chr8:54339658-54339677 MsG0880045108.01.T01:CDS 40.0%
! TGTTTGCTTACGACTTTTGC+AGG + Chr8:54339711-54339730 None:intergenic 40.0%
! TTACCTTTTCTCCTCTTCTG+TGG + Chr8:54340705-54340724 None:intergenic 40.0%
!! ATGTAATGGATCATCTCTGC+TGG - Chr8:54340111-54340130 MsG0880045108.01.T01:CDS 40.0%
!! TGTAATGGATCATCTCTGCT+GGG - Chr8:54340112-54340131 MsG0880045108.01.T01:CDS 40.0%
AAACAAGCGGGGTCAAAGAA+AGG - Chr8:54339726-54339745 MsG0880045108.01.T01:CDS 45.0%
AACAAGCGGGGTCAAAGAAA+GGG - Chr8:54339727-54339746 MsG0880045108.01.T01:CDS 45.0%
AAGTCGTAAGCAAACAAGCG+GGG - Chr8:54339715-54339734 MsG0880045108.01.T01:CDS 45.0%
ACGTCCTCAGTGATGGTTAT+AGG + Chr8:54339822-54339841 None:intergenic 45.0%
ACTACAACTCTCTTCTGGGT+GGG - Chr8:54339922-54339941 MsG0880045108.01.T01:intron 45.0%
AGCTATAACGTCCTCAGTGA+TGG + Chr8:54339829-54339848 None:intergenic 45.0%
AGGAAGCTGCTCTTGCTAAA+GGG - Chr8:54340475-54340494 MsG0880045108.01.T01:CDS 45.0%
ATCAGTAGCTGAGTACGTCT+TGG - Chr8:54340431-54340450 MsG0880045108.01.T01:CDS 45.0%
CTGCTTCTATTCCACAGAAG+AGG - Chr8:54340691-54340710 MsG0880045108.01.T01:CDS 45.0%
GAGAAAAGGTAAGGCAGACT+TGG - Chr8:54340713-54340732 MsG0880045108.01.T01:CDS 45.0%
GCTTCTTTCAAAGAGCAGGA+GGG - Chr8:54340012-54340031 MsG0880045108.01.T01:CDS 45.0%
GGACTTTCCTCCCATCTTTA+AGG - Chr8:54340383-54340402 MsG0880045108.01.T01:CDS 45.0%
GGGGTCAAAGAAAGGGAAAA+TGG - Chr8:54339734-54339753 MsG0880045108.01.T01:CDS 45.0%
TACTACAACTCTCTTCTGGG+TGG - Chr8:54339921-54339940 MsG0880045108.01.T01:intron 45.0%
TCAGAAGCTGCTCCTACTAA+AGG - Chr8:54340585-54340604 MsG0880045108.01.T01:CDS 45.0%
TGATGCACCTGAAGGGAAAA+GGG - Chr8:54340545-54340564 MsG0880045108.01.T01:CDS 45.0%
TGCTAAAGGGAAAGGCAAGA+AGG - Chr8:54340488-54340507 MsG0880045108.01.T01:CDS 45.0%
TGCTTCTTTCAAAGAGCAGG+AGG - Chr8:54340011-54340030 MsG0880045108.01.T01:intron 45.0%
TGGGCCAACATATGTGAACT+TGG - Chr8:54339644-54339663 MsG0880045108.01.T01:CDS 45.0%
! AATCTCCATCTCTGAAGGCT+TGG + Chr8:54339958-54339977 None:intergenic 45.0%
! CTGGCCTTCTTTCCTTTAGT+AGG + Chr8:54340600-54340619 None:intergenic 45.0%
! GCTAGCTTCTGTTGGTTGTT+GGG + Chr8:54340047-54340066 None:intergenic 45.0%
! TGCTAGCTTCTGTTGGTTGT+TGG + Chr8:54340048-54340067 None:intergenic 45.0%
!! CTGTTTCTGATGCACCTGAA+GGG - Chr8:54340538-54340557 MsG0880045108.01.T01:CDS 45.0%
!! GGGTGCTGGAGTTCTTAAAA+AGG - Chr8:54340213-54340232 MsG0880045108.01.T01:CDS 45.0%
AGATGCCAAGCCTTCAGAGA+TGG - Chr8:54339950-54339969 MsG0880045108.01.T01:intron 50.0%
AGCTTGTAGGATGCATGCAG+AGG - Chr8:54339851-54339870 MsG0880045108.01.T01:CDS 50.0%
AGTAGCTGAGTACGTCTTGG+AGG - Chr8:54340434-54340453 MsG0880045108.01.T01:CDS 50.0%
AGTTCAAGTAGAGTCACCGG+TGG - Chr8:54339536-54339555 MsG0880045108.01.T01:CDS 50.0%
CTGATGCACCTGAAGGGAAA+AGG - Chr8:54340544-54340563 MsG0880045108.01.T01:CDS 50.0%
GAGGAAGCTGCTCTTGCTAA+AGG - Chr8:54340474-54340493 MsG0880045108.01.T01:CDS 50.0%
GCTGCTCTTGCTAAAGGGAA+AGG - Chr8:54340480-54340499 MsG0880045108.01.T01:CDS 50.0%
GCTTGTAGGATGCATGCAGA+GGG - Chr8:54339852-54339871 MsG0880045108.01.T01:CDS 50.0%
GGTAATCACTCAAGAGCAGC+TGG - Chr8:54340734-54340753 MsG0880045108.01.T01:CDS 50.0%
TTCTGACACAGCAACTGCCT+TGG + Chr8:54340514-54340533 None:intergenic 50.0%
! CTTTCATCAAGGAAGGGTGC+TGG - Chr8:54340199-54340218 MsG0880045108.01.T01:CDS 50.0%
! GCTTCTGTTGGTTGTTGGGT+TGG + Chr8:54340043-54340062 None:intergenic 50.0%
!! GCTGTTTCTGATGCACCTGA+AGG - Chr8:54340537-54340556 MsG0880045108.01.T01:CDS 50.0%
ACGTCTTGGAGGAAGATGCG+AGG - Chr8:54340445-54340464 MsG0880045108.01.T01:CDS 55.0%
AGGGAAAGGCAAGAAGGCCA+AGG - Chr8:54340494-54340513 MsG0880045108.01.T01:CDS 55.0%
! GTTCTGGCCCTTTTCCCTTC+AGG + Chr8:54340555-54340574 None:intergenic 55.0%
GGAAGATGCGAGGTCTCAGG+AGG - Chr8:54340455-54340474 MsG0880045108.01.T01:CDS 60.0%
GGAGGAAGATGCGAGGTCTC+AGG - Chr8:54340452-54340471 MsG0880045108.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 54339423 54340803 54339423 ID=MsG0880045108.01;Name=MsG0880045108.01
Chr8 mRNA 54339423 54340803 54339423 ID=MsG0880045108.01.T01;Parent=MsG0880045108.01;Name=MsG0880045108.01.T01;_AED=0.46;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|432
Chr8 exon 54340012 54340803 54340012 ID=MsG0880045108.01.T01:exon:23458;Parent=MsG0880045108.01.T01
Chr8 exon 54339423 54339929 54339423 ID=MsG0880045108.01.T01:exon:23457;Parent=MsG0880045108.01.T01
Chr8 CDS 54340012 54340803 54340012 ID=MsG0880045108.01.T01:cds;Parent=MsG0880045108.01.T01
Chr8 CDS 54339423 54339929 54339423 ID=MsG0880045108.01.T01:cds;Parent=MsG0880045108.01.T01
Gene Sequence

>MsG0880045108.01.T01

ATGGCATCATCAAGCTCAAAAGTTTCAGAATCTACATCAAACAAGCAAAGCGTATCAGAATCTGGGTCCATCTACAAAAAGAAGACTATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGTTTGATAGAAACTCAGATGATGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCGGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGCATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTAAAAGGTTACTACAACTCTCTTCTGGGTGGGAAGAAAGATGCCAAGCCTTCAGAGATGGAGATTCACAACAGAATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGGTCTGACCAACCCAACAACCAACAGAAGCTAGCAATTTATTTCATGACCAATCTTGAAAAGATAAACTTCCCCAGATATGTAATGGATCATCTCTGCTGGGCCATAAACGAAAGCACTACAAGAGGAAGAAAACAAGTACCCTATGGAAGATTGCTTTCTGAAATCTTTCATCAAGGAAGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTGACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTACGTCTTGGAGGAAGATGCGAGGTCTCAGGAGGAAGCTGCTCTTGCTAAAGGGAAAGGCAAGAAGGCCAAGGCAGTTGCTGTGTCAGAAGCTGCTGTTTCTGATGCACCTGAAGGGAAAAGGGCCAGAACTAGTTCTGAATCAGAAGCTGCTCCTACTAAAGGAAAGAAGGCCAGAACTAGTACTGAGTCAGAAGCTGCTAAACCTGTTTCTATCAAGGAAAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCACAGAAGAGGAGAAAAGGTAAGGCAGACTTGGTAATCACTCAAGAGCAGCTGGATGAAGCTCTTGAAGAAATAAGAAAGAGGAGGCTGATCCCAAGCTGA
Protein sequence

>MsG0880045108.01.T01

MASSSSKVSESTSNKQSVSESGSIYKKKTMDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMMSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMHAEGRFQEIVRKEDVLLKGYYNSLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMTNLEKINFPRYVMDHLCWAINESTTRGRKQVPYGRLLSEIFHQGRSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESDSDFLVQSVAEYVLEEDARSQEEAALAKGKGKKAKAVAVSEAAVSDAPEGKRARTSSESEAAPTKGKKARTSTESEAAKPVSIKEKGKMQKVGAASIPQKRRKGKADLVITQEQLDEALEEIRKRRLIPS*