AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047221.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047221.01.T01 MTR_4g123630 96.361 632 22 1 2 633 21 651 0.0 1249
MsG0880047221.01.T01 MTR_2g032660 64.743 641 211 11 2 633 56 690 0.0 796
MsG0880047221.01.T01 MTR_2g063460 42.680 485 233 14 16 487 93 545 2.77e-99 315
MsG0880047221.01.T01 MTR_2g063460 42.680 485 233 14 16 487 95 547 2.77e-99 315
MsG0880047221.01.T01 MTR_4g005110 41.942 515 239 18 6 484 71 561 1.80e-97 312
MsG0880047221.01.T01 MTR_8g088390 37.911 517 253 16 16 484 26 522 1.01e-85 280
MsG0880047221.01.T01 MTR_8g088390 37.911 517 253 16 16 484 91 587 3.41e-85 280
MsG0880047221.01.T01 MTR_7g085500 36.794 549 233 22 17 484 79 594 3.73e-80 267
MsG0880047221.01.T01 MTR_2g005840 62.434 189 71 0 296 484 233 421 2.81e-79 259
MsG0880047221.01.T01 MTR_2g005840 62.434 189 71 0 296 484 264 452 9.25e-79 259
MsG0880047221.01.T01 MTR_6g032970 53.750 240 85 3 262 484 338 568 1.37e-76 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047221.01.T01 AT1G48110 48.292 644 282 16 3 623 23 638 0.0 527
MsG0880047221.01.T01 AT1G48110 48.292 644 282 16 3 623 23 638 0.0 527
MsG0880047221.01.T01 AT3G17330 45.738 610 245 15 35 617 33 583 4.67e-154 457
MsG0880047221.01.T01 AT3G17330 45.738 610 245 15 35 617 33 583 4.67e-154 457
MsG0880047221.01.T01 AT3G17330 42.644 537 223 14 107 617 4 481 1.45e-116 357
MsG0880047221.01.T01 AT1G79270 68.878 196 61 0 290 485 282 477 2.52e-89 287
MsG0880047221.01.T01 AT1G79270 68.878 196 61 0 290 485 282 477 2.52e-89 287
MsG0880047221.01.T01 AT1G79270 68.878 196 61 0 290 485 282 477 2.52e-89 287
MsG0880047221.01.T01 AT1G79270 68.878 196 61 0 290 485 297 492 3.82e-89 287
MsG0880047221.01.T01 AT3G13460 58.577 239 83 3 262 488 378 612 6.16e-89 290
MsG0880047221.01.T01 AT3G13460 58.577 239 83 3 262 488 377 611 7.50e-89 290
MsG0880047221.01.T01 AT3G13460 58.577 239 83 3 262 488 375 609 8.65e-89 290
MsG0880047221.01.T01 AT3G13060 60.714 224 84 1 261 484 345 564 8.88e-89 289
MsG0880047221.01.T01 AT3G13060 60.714 224 84 1 261 484 323 542 8.99e-89 288
MsG0880047221.01.T01 AT3G13060 60.714 224 84 1 261 484 323 542 8.99e-89 288
MsG0880047221.01.T01 AT3G13060 60.714 224 84 1 261 484 335 554 1.04e-88 288
MsG0880047221.01.T01 AT5G61020 55.794 233 91 3 262 486 199 427 2.92e-83 270
MsG0880047221.01.T01 AT5G61020 55.794 233 91 3 262 486 201 429 3.73e-83 270
MsG0880047221.01.T01 AT5G58190 56.054 223 90 3 266 484 274 492 1.63e-77 256
MsG0880047221.01.T01 AT5G58190 56.054 223 90 3 266 484 275 493 1.69e-77 256
MsG0880047221.01.T01 AT3G03950 56.250 224 90 3 262 484 195 411 5.19e-76 249
MsG0880047221.01.T01 AT3G03950 56.250 224 90 3 262 484 191 407 5.56e-76 249
MsG0880047221.01.T01 AT3G03950 56.250 224 90 3 262 484 192 408 7.51e-76 249
MsG0880047221.01.T01 AT1G09810 49.821 279 121 4 208 482 94 357 6.56e-75 246
MsG0880047221.01.T01 AT1G09810 49.821 279 121 4 208 482 136 399 7.81e-75 248
MsG0880047221.01.T01 AT1G09810 49.821 279 121 4 208 482 117 380 1.29e-74 246
MsG0880047221.01.T01 AT1G27960 53.304 227 83 3 261 484 216 422 1.58e-74 246
MsG0880047221.01.T01 AT1G27960 53.304 227 83 3 261 484 290 496 6.32e-74 247
MsG0880047221.01.T01 AT3G13060 59.184 196 76 1 261 456 345 536 3.17e-70 238
MsG0880047221.01.T01 AT3G13460 55.285 123 39 3 262 372 378 496 1.62e-30 126
MsG0880047221.01.T01 AT3G13060 49.107 112 53 1 261 372 345 452 1.57e-24 107
MsG0880047221.01.T01 AT1G27960 40.441 136 58 3 261 393 290 405 1.15e-19 92.4
MsG0880047221.01.T01 AT4G11970 29.282 181 100 4 303 466 49 218 2.80e-15 78.6
MsG0880047221.01.T01 AT4G11970 29.282 181 100 4 303 466 49 218 3.04e-15 78.2
MsG0880047221.01.T01 AT4G11970 29.282 181 100 4 303 466 49 218 4.46e-15 77.8
MsG0880047221.01.T01 AT4G11970 29.747 158 95 3 314 466 72 218 1.66e-14 76.6
MsG0880047221.01.T01 AT4G11970 29.747 158 95 3 314 466 72 218 1.66e-14 76.6

Find 165 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTCTCGGCTGTTAGTTAC+AGG 0.207434 8:+83516477 None:intergenic
ATTTCTTCTGTTCTGAATAT+TGG 0.221213 8:-83515654 MsG0880047221.01.T01:CDS
TTTATCATGTGCCACTTTAC+AGG 0.241019 8:+83516555 None:intergenic
TAGAAGCGGTGATGTATTAT+TGG 0.272352 8:-83517116 MsG0880047221.01.T01:CDS
ACCTCATCCTTAAGTCTTGC+TGG 0.272803 8:-83515436 MsG0880047221.01.T01:three_prime_UTR
GACTATGGATCTAATGCTAA+TGG 0.294071 8:-83517196 MsG0880047221.01.T01:CDS
ATCATAGCACCTGGAATATA+AGG 0.296402 8:+83518202 None:intergenic
TTGATAGGCAGATGATGTTT+TGG 0.300677 8:+83517061 None:intergenic
TCAATTGGTTCTGTATTAGA+TGG 0.309724 8:+83515594 None:intergenic
TTGCCTGCCTGTAGAGATCT+TGG 0.313418 8:+83515483 None:intergenic
TTAGCAATTTCATTGTCAAT+AGG 0.315116 8:+83516959 None:intergenic
AGAAAAGCTACTGGAAAATC+TGG 0.315736 8:-83516818 MsG0880047221.01.T01:CDS
GTATATTACACACCTAACTA+TGG 0.315879 8:-83518256 MsG0880047221.01.T01:CDS
AAATGAAGAAATGTAATAAC+TGG 0.334090 8:-83515038 MsG0880047221.01.T01:three_prime_UTR
GTTTCGTCTCTACCTGTCTT+GGG 0.344280 8:+83515616 None:intergenic
TTTATACTGATCAATATAAC+AGG 0.344509 8:-83516991 MsG0880047221.01.T01:CDS
GAGCTGCCCCGTTGAGTAAT+GGG 0.349853 8:-83517225 MsG0880047221.01.T01:CDS
ACTTCTGGCAGCAAGATAAA+TGG 0.351298 8:-83516590 MsG0880047221.01.T01:CDS
CTCTACCTGTCTTGGGGTAA+TGG 0.360665 8:+83515623 None:intergenic
TAGCAATTTCATTGTCAATA+GGG 0.363005 8:+83516960 None:intergenic
GCTTCTGTCAATAGACTTGA+TGG 0.366272 8:-83518034 MsG0880047221.01.T01:CDS
TGCATCACAATTGGGAAGTT+GGG 0.369850 8:-83515357 MsG0880047221.01.T01:three_prime_UTR
TATTATTGGGTGAACAAAAT+CGG 0.371689 8:-83517102 MsG0880047221.01.T01:CDS
TCAATGCAAGTCAGAGTTAA+TGG 0.373259 8:-83515555 MsG0880047221.01.T01:CDS
TATATTCCAGGTGCTATGAT+TGG 0.373959 8:-83518199 MsG0880047221.01.T01:CDS
AATATAAGTTGGCGAAGAAA+TGG 0.379570 8:+83518117 None:intergenic
CCATACAATCCTTATATTCC+AGG 0.381940 8:-83518211 MsG0880047221.01.T01:CDS
CTCACCGTGTACTGAATATC+AGG 0.385752 8:+83518388 None:intergenic
TGTTGACATCAATAAGGATA+TGG 0.386422 8:-83516613 MsG0880047221.01.T01:CDS
ATTGGAGTTGATGGTTCATT+TGG 0.388143 8:-83518181 MsG0880047221.01.T01:CDS
CTCCTTTGAATTGATTATGA+TGG 0.392180 8:+83517245 None:intergenic
GCAAAGAAAGATTCGACAAA+TGG 0.395866 8:-83517887 MsG0880047221.01.T01:CDS
TCAATAAGGATATGGACTTC+TGG 0.398499 8:-83516605 MsG0880047221.01.T01:CDS
ATATAAGTTGGCGAAGAAAT+GGG 0.400966 8:+83518118 None:intergenic
AAGTTTCTAATGAAGGGTTT+TGG 0.402265 8:-83515888 MsG0880047221.01.T01:CDS
GAAAACTAAGTTTCTAATGA+AGG 0.407105 8:-83515895 MsG0880047221.01.T01:CDS
ACCGCTTCTATTTACATCAC+TGG 0.408688 8:+83517129 None:intergenic
CAGAAAACCCATTACTCAAC+GGG 0.408797 8:+83517218 None:intergenic
TTGCATCACAATTGGGAAGT+TGG 0.413687 8:-83515358 MsG0880047221.01.T01:three_prime_UTR
GGTTTCGTCTCTACCTGTCT+TGG 0.414202 8:+83515615 None:intergenic
ATGCCCGATTGCATCACAAT+TGG 0.415768 8:-83515366 MsG0880047221.01.T01:three_prime_UTR
TAAGGATTGTATGGATTGTA+TGG 0.416713 8:+83518220 None:intergenic
TGCTTCATCACCTTCCCATC+AGG 0.416964 8:-83517834 MsG0880047221.01.T01:intron
TGGTCCTGTTGACATCAATA+AGG 0.423599 8:-83516619 MsG0880047221.01.T01:CDS
ATCTCCCGACTTTGCTGTAT+AGG 0.424723 8:+83517036 None:intergenic
TCCTTTGAATTGATTATGAT+GGG 0.425302 8:+83517246 None:intergenic
CACTACATCTGTGGATGAAA+AGG 0.427457 8:-83515706 MsG0880047221.01.T01:CDS
ATCAGACAAGTTCCTTCCTC+AGG 0.430873 8:-83517940 MsG0880047221.01.T01:CDS
CCTGGAATATAAGGATTGTA+TGG 0.432058 8:+83518211 None:intergenic
TTTGCTGTATAGGCTTTGAT+AGG 0.432522 8:+83517046 None:intergenic
CCTCATCCTTAAGTCTTGCT+GGG 0.432969 8:-83515435 MsG0880047221.01.T01:three_prime_UTR
TATGGTAGTGAATCTTTCTT+CGG 0.433115 8:-83514993 MsG0880047221.01.T01:three_prime_UTR
TTTGCCAAAGCATTAGCTCT+TGG 0.434436 8:+83517905 None:intergenic
GGTGCTATGATTGGAGTTGA+TGG 0.439110 8:-83518190 MsG0880047221.01.T01:CDS
ATTATTGGGTGAACAAAATC+GGG 0.439439 8:-83517101 MsG0880047221.01.T01:CDS
CTTCCCAATTGTGATGCAAT+CGG 0.440941 8:+83515362 None:intergenic
CTGGGAGCAACATGAACCTT+TGG 0.447906 8:+83517148 None:intergenic
GACATCCCCAGCAAGACTTA+AGG 0.448843 8:+83515429 None:intergenic
ATATCCTTATTGATGTCAAC+AGG 0.450331 8:+83516615 None:intergenic
GATAATGTATAGAAAGGGTC+TGG 0.450752 8:-83516012 MsG0880047221.01.T01:CDS
AGAAGCGGTGATGTATTATT+GGG 0.451767 8:-83517115 MsG0880047221.01.T01:CDS
ATGTGCCTAAAATTTCCATT+TGG 0.458334 8:+83516525 None:intergenic
GGAGTTGATGGTTCATTTGG+AGG 0.459454 8:-83518178 MsG0880047221.01.T01:CDS
AGCATTAGCTCTTGGCCCCT+CGG 0.460855 8:+83517913 None:intergenic
AAGTCTTGCTGGGGATGTCT+AGG 0.461760 8:-83515425 MsG0880047221.01.T01:three_prime_UTR
CCGACTGTGACAACATCAAT+TGG 0.462977 8:+83515579 None:intergenic
ATGATAAAAGATGTGCCAAA+TGG 0.472322 8:-83516540 MsG0880047221.01.T01:CDS
AAATTAAGAAAACCACTGTT+AGG 0.473007 8:+83517857 None:intergenic
GATTTGAATCACCTGGTGAA+TGG 0.474628 8:-83518444 MsG0880047221.01.T01:CDS
GACTGTGCAAATCCATAGTT+AGG 0.475651 8:+83518244 None:intergenic
ACTATGGATCTAATGCTAAT+GGG 0.477126 8:-83517195 MsG0880047221.01.T01:CDS
AAAACATTATTCAGCTTTCG+AGG 0.481363 8:+83515843 None:intergenic
TGCCCGATTGCATCACAATT+GGG 0.483398 8:-83515365 MsG0880047221.01.T01:three_prime_UTR
CCTCCTGCATGACCTTCTGT+CGG 0.484140 8:+83515919 None:intergenic
ATGGGGCAAAACATTTCCAT+TGG 0.484243 8:+83517264 None:intergenic
TTAGGTGTGTAATATACATA+AGG 0.485977 8:+83518262 None:intergenic
ACCGAAAAGAAAAGAAAGAT+AGG 0.487885 8:+83516788 None:intergenic
TGTGCAGATAATGTATAGAA+AGG 0.489425 8:-83516018 MsG0880047221.01.T01:intron
ATTTGAATCACCTGGTGAAT+GGG 0.489938 8:-83518443 MsG0880047221.01.T01:CDS
TTCCCAATTGTGATGCAATC+GGG 0.490315 8:+83515363 None:intergenic
CCCCATCATAATCAATTCAA+AGG 0.497677 8:-83517247 MsG0880047221.01.T01:CDS
TTACAGTATTGATCGAAAGA+TGG 0.498342 8:-83515397 MsG0880047221.01.T01:three_prime_UTR
AAAACTAAGTTTCTAATGAA+GGG 0.499233 8:-83515894 MsG0880047221.01.T01:CDS
TTCATCCACAGATGTAGTGC+TGG 0.503907 8:+83515710 None:intergenic
CAAAGCCTATACAGCAAAGT+CGG 0.507526 8:-83517041 MsG0880047221.01.T01:CDS
GCTTTCACTTGATTGATACA+AGG 0.508064 8:-83515311 MsG0880047221.01.T01:three_prime_UTR
AGAAAGAAATACACAACAAA+GGG 0.508554 8:+83515136 None:intergenic
GAACTTGTCTGATTTGATGA+TGG 0.508845 8:+83517950 None:intergenic
GAACTATGATGAAAATTGTC+TGG 0.512526 8:+83518082 None:intergenic
TGTATACCTCTTGTGTGTCT+CGG 0.513829 8:+83516463 None:intergenic
GATGCTAGGAGAAAAGCTAC+TGG 0.514734 8:-83516827 MsG0880047221.01.T01:CDS
GGGGCCAAGAGCTAATGCTT+TGG 0.515241 8:-83517909 MsG0880047221.01.T01:CDS
ACTTGATCCAAGATCTCTAC+AGG 0.515937 8:-83515490 MsG0880047221.01.T01:CDS
TTGATACAAGGCTAAACCGT+TGG 0.517407 8:-83515299 MsG0880047221.01.T01:three_prime_UTR
GCATTAGCTCTTGGCCCCTC+GGG 0.520251 8:+83517914 None:intergenic
CCGCTTCTATTTACATCACT+GGG 0.521176 8:+83517130 None:intergenic
TGAACAAGAGGAATATAAGT+TGG 0.522275 8:+83518106 None:intergenic
GGAGCTGCCCCGTTGAGTAA+TGG 0.524236 8:-83517226 MsG0880047221.01.T01:CDS
GTCAATAGACTTGATGGAAG+AGG 0.526422 8:-83518028 MsG0880047221.01.T01:CDS
TTTCGAGGTGGCGCCAACAC+TGG 0.533894 8:+83515858 None:intergenic
TCCTTCCTCAGGGTACCCGA+GGG 0.534598 8:-83517929 MsG0880047221.01.T01:CDS
TTATCATGTGCCACTTTACA+GGG 0.536336 8:+83516556 None:intergenic
TTCCTTCCTCAGGGTACCCG+AGG 0.539305 8:-83517930 MsG0880047221.01.T01:CDS
TGGTGGTCCTCCCATTCACC+AGG 0.542526 8:+83518433 None:intergenic
GTGCAGATAATGTATAGAAA+GGG 0.542850 8:-83516017 MsG0880047221.01.T01:intron
TATGCACTGTATTGACCACT+TGG 0.548951 8:-83518483 None:intergenic
AAAGCCTATACAGCAAAGTC+GGG 0.551116 8:-83517040 MsG0880047221.01.T01:CDS
TGTGGAGTTGCTGAGATGGT+TGG 0.557085 8:-83516639 MsG0880047221.01.T01:CDS
GGGTAAGCTTATTACCTGAT+GGG 0.560408 8:+83517820 None:intergenic
TGTAGAGATCTTGGATCAAG+TGG 0.562297 8:+83515492 None:intergenic
TGCAGTTTCTTGTTTCCATG+AGG 0.563498 8:+83516863 None:intergenic
AATTTAAAGACAGATGAACT+TGG 0.563613 8:-83515792 MsG0880047221.01.T01:CDS
TGGCTAGGATTTGAATCACC+TGG 0.564541 8:-83518451 MsG0880047221.01.T01:CDS
AAATTGTCTGGTTGAACAAG+AGG 0.565932 8:+83518094 None:intergenic
TATAAGTTGGCGAAGAAATG+GGG 0.569498 8:+83518119 None:intergenic
GTGTGGTCATCAACACCTCA+TGG 0.572729 8:-83516878 MsG0880047221.01.T01:CDS
ATCGGGGCCCTAGAATTAGT+AGG 0.574334 8:-83517084 MsG0880047221.01.T01:CDS
CCAATTGATGTTGTCACAGT+CGG 0.582496 8:-83515579 MsG0880047221.01.T01:CDS
GTGGGAGCTTCCCTGTAAAG+TGG 0.586968 8:-83516566 MsG0880047221.01.T01:CDS
AACTCCACAAAATTGACCGC+TGG 0.588632 8:+83516653 None:intergenic
CCCAGTGATGTAAATAGAAG+CGG 0.589037 8:-83517130 MsG0880047221.01.T01:CDS
CAACCTCGCGAATTGTTCGC+TGG 0.589088 8:+83515209 None:intergenic
AAGCTTATTACCTGATGGGA+AGG 0.591653 8:+83517824 None:intergenic
TACAAGGCTAAACCGTTGGA+TGG 0.593011 8:-83515295 MsG0880047221.01.T01:three_prime_UTR
AGTCACCATTACCCCAAGAC+AGG 0.594914 8:-83515628 MsG0880047221.01.T01:CDS
CCCCTCGGGTACCCTGAGGA+AGG 0.595318 8:+83517928 None:intergenic
GATCCAAGATCTCTACAGGC+AGG 0.595943 8:-83515486 MsG0880047221.01.T01:CDS
CCCAGCAAGACTTAAGGATG+AGG 0.597908 8:+83515435 None:intergenic
AAACCGACAGAAGGTCATGC+AGG 0.599786 8:-83515922 MsG0880047221.01.T01:CDS
AATTGCTAAACTTCGACCAA+AGG 0.600391 8:-83517164 MsG0880047221.01.T01:CDS
ACATACTTCAATTTCAAATG+CGG 0.601687 8:-83515760 MsG0880047221.01.T01:CDS
CGCTAGAAAGATCCATCCAA+CGG 0.602011 8:+83515283 None:intergenic
CAGAAAGAAATACACAACAA+AGG 0.604969 8:+83515135 None:intergenic
AGATCTCTACAGGCAGGCAA+AGG 0.607123 8:-83515480 MsG0880047221.01.T01:CDS
CTCATCCTTAAGTCTTGCTG+GGG 0.607421 8:-83515434 MsG0880047221.01.T01:three_prime_UTR
TTTCGTCTCTACCTGTCTTG+GGG 0.609585 8:+83515617 None:intergenic
TCAACTCCAATCATAGCACC+TGG 0.611265 8:+83518193 None:intergenic
GGCAGCAAGATAAATGGAGT+GGG 0.612024 8:-83516584 MsG0880047221.01.T01:CDS
AGAGTGCTTATGAAGATGCT+AGG 0.613434 8:-83516841 MsG0880047221.01.T01:CDS
TGAATCACCTGGTGAATGGG+AGG 0.616103 8:-83518440 MsG0880047221.01.T01:CDS
TTACTATGAAAACCGACAGA+AGG 0.618618 8:-83515931 MsG0880047221.01.T01:CDS
CCTTTGAATTGATTATGATG+GGG 0.619417 8:+83517247 None:intergenic
TGTCACCAGCACTACATCTG+TGG 0.635296 8:-83515715 MsG0880047221.01.T01:CDS
TGGCAGCAAGATAAATGGAG+TGG 0.635971 8:-83516585 MsG0880047221.01.T01:CDS
TCAGACAAGTTCCTTCCTCA+GGG 0.638045 8:-83517939 MsG0880047221.01.T01:CDS
TCAGAAAACCCATTACTCAA+CGG 0.638768 8:+83517217 None:intergenic
AATGGAAGTGTTCCTAACAG+TGG 0.638957 8:-83517869 MsG0880047221.01.T01:CDS
TCAATGTAGGTTAATGCCAG+CGG 0.649389 8:-83516669 MsG0880047221.01.T01:intron
ACATTATTCAGCTTTCGAGG+TGG 0.659451 8:+83515846 None:intergenic
AAAGCTACTGGAAAATCTGG+AGG 0.667052 8:-83516815 MsG0880047221.01.T01:CDS
TGTTATAAAATCATACAGTG+AGG 0.670580 8:-83516930 MsG0880047221.01.T01:CDS
GTAGAGATCTTGGATCAAGT+GGG 0.673059 8:+83515493 None:intergenic
TGGTCCTGATATTCAGTACA+CGG 0.673378 8:-83518392 MsG0880047221.01.T01:intron
TTGGCCCCTCGGGTACCCTG+AGG 0.673523 8:+83517924 None:intergenic
AAAGCATTAAATATAACGTG+TGG 0.673580 8:-83516895 MsG0880047221.01.T01:CDS
TAACAGCCGAGACACACAAG+AGG 0.680258 8:-83516469 MsG0880047221.01.T01:intron
CTGCCAGCGAACAATTCGCG+AGG 0.682834 8:-83515212 MsG0880047221.01.T01:three_prime_UTR
CCTTCCTCAGGGTACCCGAG+GGG 0.684367 8:-83517928 MsG0880047221.01.T01:CDS
CCGACAGAAGGTCATGCAGG+AGG 0.689597 8:-83515919 MsG0880047221.01.T01:CDS
TGAAAAGGTTGAGAATGATG+TGG 0.715647 8:-83515691 MsG0880047221.01.T01:CDS
TTATTGGGTGAACAAAATCG+GGG 0.719539 8:-83517100 MsG0880047221.01.T01:CDS
TCGCTGGCAGACATAATATG+CGG 0.720139 8:+83515225 None:intergenic
TTATACTGATCAATATAACA+GGG 0.725652 8:-83516990 MsG0880047221.01.T01:CDS
TACTGATCAATATAACAGGG+AGG 0.738774 8:-83516987 MsG0880047221.01.T01:CDS
AGAAAACCCATTACTCAACG+GGG 0.769685 8:+83517219 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTATATACCTTTTAA+AGG - Chr8:83517311-83517330 MsG0880047221.01.T01:intron 15.0%
!! AAAACTAAGTTTCTAATGAA+GGG - Chr8:83517570-83517589 MsG0880047221.01.T01:intron 20.0%
!! AAATGAAGAAATGTAATAAC+TGG - Chr8:83518426-83518445 MsG0880047221.01.T01:CDS 20.0%
!! TTATACTGATCAATATAACA+GGG - Chr8:83516474-83516493 MsG0880047221.01.T01:CDS 20.0%
!! TTTATACTGATCAATATAAC+AGG - Chr8:83516473-83516492 MsG0880047221.01.T01:CDS 20.0%
!!! ATGGTACTTTTTTTATGAAA+AGG - Chr8:83515943-83515962 MsG0880047221.01.T01:CDS 20.0%
!!! TTTTCATAAAAAAAGTACCA+TGG + Chr8:83515944-83515963 None:intergenic 20.0%
! AAATTAAGAAAACCACTGTT+AGG + Chr8:83515610-83515629 None:intergenic 25.0%
! AAATTCCAATATAGCTCAAA+AGG + Chr8:83515668-83515687 None:intergenic 25.0%
! AACCTACATTGAAAAAGAAA+GGG + Chr8:83516787-83516806 None:intergenic 25.0%
! AATTCCAATATAGCTCAAAA+GGG + Chr8:83515667-83515686 None:intergenic 25.0%
! AATTTAAAGACAGATGAACT+TGG - Chr8:83517672-83517691 MsG0880047221.01.T01:intron 25.0%
! ACATACTTCAATTTCAAATG+CGG - Chr8:83517704-83517723 MsG0880047221.01.T01:intron 25.0%
! AGAAAGAAATACACAACAAA+GGG + Chr8:83518331-83518350 None:intergenic 25.0%
! ATTGTTCGAATTTGTGAATA+TGG - Chr8:83517144-83517163 MsG0880047221.01.T01:CDS 25.0%
! GAAAACTAAGTTTCTAATGA+AGG - Chr8:83517569-83517588 MsG0880047221.01.T01:intron 25.0%
! GTCAAAATTATATTAACAGC+AGG + Chr8:83517406-83517425 None:intergenic 25.0%
! TAAAATTGATAAGTGTTCCT+GGG - Chr8:83517055-83517074 MsG0880047221.01.T01:CDS 25.0%
! TAACCTACATTGAAAAAGAA+AGG + Chr8:83516788-83516807 None:intergenic 25.0%
! TAGCAAGTTACTACTATTAT+AGG - Chr8:83515909-83515928 MsG0880047221.01.T01:CDS 25.0%
! TAGCAATTTCATTGTCAATA+GGG + Chr8:83516507-83516526 None:intergenic 25.0%
! TATTATTGGGTGAACAAAAT+CGG - Chr8:83516362-83516381 MsG0880047221.01.T01:intron 25.0%
! TCCTTTGAATTGATTATGAT+GGG + Chr8:83516221-83516240 None:intergenic 25.0%
! TGTTATAAAATCATACAGTG+AGG - Chr8:83516534-83516553 MsG0880047221.01.T01:CDS 25.0%
! TTAAAATTGATAAGTGTTCC+TGG - Chr8:83517054-83517073 MsG0880047221.01.T01:CDS 25.0%
! TTAGCAATTTCATTGTCAAT+AGG + Chr8:83516508-83516527 None:intergenic 25.0%
! TTAGGTGTGTAATATACATA+AGG + Chr8:83515205-83515224 None:intergenic 25.0%
!! AAAGCATTAAATATAACGTG+TGG - Chr8:83516569-83516588 MsG0880047221.01.T01:CDS 25.0%
!! ATTTCTTCTGTTCTGAATAT+TGG - Chr8:83517810-83517829 MsG0880047221.01.T01:intron 25.0%
!! TCCTATCTTTCTTTTCTTTT+CGG - Chr8:83516675-83516694 MsG0880047221.01.T01:intron 25.0%
!!! ATGAATGCGTTTTAAGATTA+TGG - Chr8:83518453-83518472 MsG0880047221.01.T01:CDS 25.0%
!!! TAAAAAAAGTACCATGGAAA+AGG + Chr8:83515938-83515957 None:intergenic 25.0%
!!! TACATAAGTTTTAGAAGTAC+AGG + Chr8:83516727-83516746 None:intergenic 25.0%
!!! TTATTAGTTTGTGAACTTTG+TGG - Chr8:83515993-83516012 MsG0880047221.01.T01:CDS 25.0%
AAAACATTATTCAGCTTTCG+AGG + Chr8:83517624-83517643 None:intergenic 30.0%
AAACATGTCAAAAGCAAAAG+TGG + Chr8:83515859-83515878 None:intergenic 30.0%
AACATGTCAAAAGCAAAAGT+GGG + Chr8:83515858-83515877 None:intergenic 30.0%
ACCGAAAAGAAAAGAAAGAT+AGG + Chr8:83516679-83516698 None:intergenic 30.0%
ACTATGGATCTAATGCTAAT+GGG - Chr8:83516269-83516288 MsG0880047221.01.T01:intron 30.0%
ATATCCTTATTGATGTCAAC+AGG + Chr8:83516852-83516871 None:intergenic 30.0%
ATGATAAAAGATGTGCCAAA+TGG - Chr8:83516924-83516943 MsG0880047221.01.T01:CDS 30.0%
ATGTGCCTAAAATTTCCATT+TGG + Chr8:83516942-83516961 None:intergenic 30.0%
ATTATTGGGTGAACAAAATC+GGG - Chr8:83516363-83516382 MsG0880047221.01.T01:intron 30.0%
CAGAAAGAAATACACAACAA+AGG + Chr8:83518332-83518351 None:intergenic 30.0%
CATAAGCTGGTAAAAAATGT+GGG - Chr8:83517334-83517353 MsG0880047221.01.T01:intron 30.0%
CATCTACACCAAAAATTCTA+TGG + Chr8:83515054-83515073 None:intergenic 30.0%
CCTTTGAATTGATTATGATG+GGG + Chr8:83516220-83516239 None:intergenic 30.0%
CTCCTTTGAATTGATTATGA+TGG + Chr8:83516222-83516241 None:intergenic 30.0%
GAACTATGATGAAAATTGTC+TGG + Chr8:83515385-83515404 None:intergenic 30.0%
GAATAGTGTGTTTATATGGA+AGG - Chr8:83515795-83515814 MsG0880047221.01.T01:CDS 30.0%
GTATATTACACACCTAACTA+TGG - Chr8:83515208-83515227 MsG0880047221.01.T01:three_prime_UTR 30.0%
GTGCAGATAATGTATAGAAA+GGG - Chr8:83517447-83517466 MsG0880047221.01.T01:intron 30.0%
TACTCAATTGTTTCCTAACA+AGG + Chr8:83517175-83517194 None:intergenic 30.0%
TCAACTAAAAACTTGCATGT+CGG + Chr8:83517092-83517111 None:intergenic 30.0%
TGAACAAGAGGAATATAAGT+TGG + Chr8:83515361-83515380 None:intergenic 30.0%
TGTCTCAATGATGTAAATGT+TGG - Chr8:83517277-83517296 MsG0880047221.01.T01:CDS 30.0%
TGTGCAGATAATGTATAGAA+AGG - Chr8:83517446-83517465 MsG0880047221.01.T01:intron 30.0%
TGTTGACATCAATAAGGATA+TGG - Chr8:83516851-83516870 MsG0880047221.01.T01:CDS 30.0%
TTACATCATTGAGACAATCA+AGG + Chr8:83517273-83517292 None:intergenic 30.0%
TTGTTAGGAAACAATTGAGT+AGG - Chr8:83517174-83517193 MsG0880047221.01.T01:CDS 30.0%
! AAATGCTTCTTTCTTTTCCA+GGG - Chr8:83515160-83515179 MsG0880047221.01.T01:three_prime_UTR 30.0%
! AAATTTTTCTCATCACTTGC+AGG + Chr8:83517657-83517676 None:intergenic 30.0%
! AAGTTTCTAATGAAGGGTTT+TGG - Chr8:83517576-83517595 MsG0880047221.01.T01:intron 30.0%
! AATATAAGTTGGCGAAGAAA+TGG + Chr8:83515350-83515369 None:intergenic 30.0%
! AATTGTGTTGTTGTATTTGC+TGG - Chr8:83516046-83516065 MsG0880047221.01.T01:intron 30.0%
! ATAGCTATATTTTCCTTCTG+TGG - Chr8:83516126-83516145 MsG0880047221.01.T01:intron 30.0%
! ATATAAGTTGGCGAAGAAAT+GGG + Chr8:83515349-83515368 None:intergenic 30.0%
! ATGTGCCAAATGGAAATTTT+AGG - Chr8:83516934-83516953 MsG0880047221.01.T01:CDS 30.0%
! GTGTTTATATGGAAGGATTT+TGG - Chr8:83515802-83515821 MsG0880047221.01.T01:CDS 30.0%
! TAAATGCTTCTTTCTTTTCC+AGG - Chr8:83515159-83515178 MsG0880047221.01.T01:three_prime_UTR 30.0%
! TAAGGATTGTATGGATTGTA+TGG + Chr8:83515247-83515266 None:intergenic 30.0%
! TATGGTAGTGAATCTTTCTT+CGG - Chr8:83518471-83518490 MsG0880047221.01.T01:CDS 30.0%
! TTTTATGAAAAGGACATGCT+TGG - Chr8:83515953-83515972 MsG0880047221.01.T01:CDS 30.0%
!! AAATGGGGTTTTGATAATTG+GGG + Chr8:83515333-83515352 None:intergenic 30.0%
!! AGAAATGGGGTTTTGATAAT+TGG + Chr8:83515335-83515354 None:intergenic 30.0%
!! CTTTTGCTTTTGACATGTTT+AGG - Chr8:83515859-83515878 MsG0880047221.01.T01:CDS 30.0%
!! GAAATGGGGTTTTGATAATT+GGG + Chr8:83515334-83515353 None:intergenic 30.0%
!! TCAATTGGTTCTGTATTAGA+TGG + Chr8:83517873-83517892 None:intergenic 30.0%
!! TTACAGTATTGATCGAAAGA+TGG - Chr8:83518067-83518086 MsG0880047221.01.T01:CDS 30.0%
!!! CATAGAATTTTTGGTGTAGA+TGG - Chr8:83515052-83515071 MsG0880047221.01.T01:three_prime_UTR 30.0%
!!! TCTGTAGATACTTTTTCCAA+TGG - Chr8:83516184-83516203 MsG0880047221.01.T01:intron 30.0%
AAATTGTCTGGTTGAACAAG+AGG + Chr8:83515373-83515392 None:intergenic 35.0%
AATTATGTGTGCATGCGATT+AGG + Chr8:83517214-83517233 None:intergenic 35.0%
AATTGCTAAACTTCGACCAA+AGG - Chr8:83516300-83516319 MsG0880047221.01.T01:intron 35.0%
ACATGTCAAAAGCAAAAGTG+GGG + Chr8:83515857-83515876 None:intergenic 35.0%
AGAAAAGCTACTGGAAAATC+TGG - Chr8:83516646-83516665 MsG0880047221.01.T01:CDS 35.0%
AGAAGCGGTGATGTATTATT+GGG - Chr8:83516349-83516368 MsG0880047221.01.T01:intron 35.0%
ATCATAGCACCTGGAATATA+AGG + Chr8:83515265-83515284 None:intergenic 35.0%
ATTATCTGCACATGAGGAAT+GGG + Chr8:83517438-83517457 None:intergenic 35.0%
ATTTGAATCACCTGGTGAAT+GGG - Chr8:83515021-83515040 MsG0880047221.01.T01:three_prime_UTR 35.0%
CCATACAATCCTTATATTCC+AGG - Chr8:83515253-83515272 MsG0880047221.01.T01:three_prime_UTR 35.0%
CCCCATCATAATCAATTCAA+AGG - Chr8:83516217-83516236 MsG0880047221.01.T01:intron 35.0%
CCTGGAATATAAGGATTGTA+TGG + Chr8:83515256-83515275 None:intergenic 35.0%
CTACACCAAAAATTCTATGG+TGG + Chr8:83515051-83515070 None:intergenic 35.0%
CTATACATTATCTGCACATG+AGG + Chr8:83517444-83517463 None:intergenic 35.0%
GACTATGGATCTAATGCTAA+TGG - Chr8:83516268-83516287 MsG0880047221.01.T01:intron 35.0%
GATAATGTATAGAAAGGGTC+TGG - Chr8:83517452-83517471 MsG0880047221.01.T01:intron 35.0%
GCAAAGAAAGATTCGACAAA+TGG - Chr8:83515577-83515596 MsG0880047221.01.T01:CDS 35.0%
GCATAAGCTGGTAAAAAATG+TGG - Chr8:83517333-83517352 MsG0880047221.01.T01:intron 35.0%
GCTGGAATAGTGTGTTTATA+TGG - Chr8:83515791-83515810 MsG0880047221.01.T01:CDS 35.0%
GCTTTCACTTGATTGATACA+AGG - Chr8:83518153-83518172 MsG0880047221.01.T01:CDS 35.0%
TACCAGCTTATGCCTTTAAA+AGG + Chr8:83517326-83517345 None:intergenic 35.0%
TACTGATCAATATAACAGGG+AGG - Chr8:83516477-83516496 MsG0880047221.01.T01:CDS 35.0%
TAGAAGCGGTGATGTATTAT+TGG - Chr8:83516348-83516367 MsG0880047221.01.T01:intron 35.0%
TAGCCACAAAAAATACCAAG+TGG + Chr8:83514999-83515018 None:intergenic 35.0%
TATGACACACAAGACACATA+CGG + Chr8:83515119-83515138 None:intergenic 35.0%
TCAATAAGGATATGGACTTC+TGG - Chr8:83516859-83516878 MsG0880047221.01.T01:CDS 35.0%
TCAATGCAAGTCAGAGTTAA+TGG - Chr8:83517909-83517928 MsG0880047221.01.T01:CDS 35.0%
TCAGAAAACCCATTACTCAA+CGG + Chr8:83516250-83516269 None:intergenic 35.0%
TGAAAAGGTTGAGAATGATG+TGG - Chr8:83517773-83517792 MsG0880047221.01.T01:intron 35.0%
TGTCTTGTGTGTCATATGTT+GGG - Chr8:83515123-83515142 MsG0880047221.01.T01:three_prime_UTR 35.0%
TTACTATGAAAACCGACAGA+AGG - Chr8:83517533-83517552 MsG0880047221.01.T01:intron 35.0%
TTATTGGGTGAACAAAATCG+GGG - Chr8:83516364-83516383 MsG0880047221.01.T01:intron 35.0%
! AAAGTGTTATCAATGGCAGA+AGG + Chr8:83515828-83515847 None:intergenic 35.0%
! ATTATAGGTCACCTTTTCCA+TGG - Chr8:83515924-83515943 MsG0880047221.01.T01:CDS 35.0%
! CTTACCCTTTTGAGCTATAT+TGG - Chr8:83515660-83515679 MsG0880047221.01.T01:CDS 35.0%
! GAACTTGTCTGATTTGATGA+TGG + Chr8:83515517-83515536 None:intergenic 35.0%
! GAAGCATTTAAATCAGCTGT+CGG + Chr8:83515149-83515168 None:intergenic 35.0%
! GCTTGACAAAGTGTTATCAA+TGG + Chr8:83515835-83515854 None:intergenic 35.0%
! TATAAGTTGGCGAAGAAATG+GGG + Chr8:83515348-83515367 None:intergenic 35.0%
! TATATTCCAGGTGCTATGAT+TGG - Chr8:83515265-83515284 MsG0880047221.01.T01:three_prime_UTR 35.0%
! TTGATAGGCAGATGATGTTT+TGG + Chr8:83516406-83516425 None:intergenic 35.0%
! TTTGCTGTATAGGCTTTGAT+AGG + Chr8:83516421-83516440 None:intergenic 35.0%
! TTTTCCTTCTGTGGTATTGT+AGG - Chr8:83516135-83516154 MsG0880047221.01.T01:intron 35.0%
!! AATGGATTTTCTGAGTCTTC+TGG - Chr8:83517927-83517946 MsG0880047221.01.T01:CDS 35.0%
!! AGGTCAAGTTTTGATGTAAG+TGG + Chr8:83518012-83518031 None:intergenic 35.0%
!! ATTGGAGTTGATGGTTCATT+TGG - Chr8:83515283-83515302 MsG0880047221.01.T01:three_prime_UTR 35.0%
!! GTTTTGGCCTACTAATTCTA+GGG + Chr8:83516390-83516409 None:intergenic 35.0%
!! TACCTTTTAAAGGCATAAGC+TGG - Chr8:83517321-83517340 MsG0880047221.01.T01:intron 35.0%
!! TGAGTCTTCTGGTGTTTTAA+AGG - Chr8:83517938-83517957 MsG0880047221.01.T01:CDS 35.0%
!! TGGAAAAAGTATCTACAGAC+TGG + Chr8:83516183-83516202 None:intergenic 35.0%
!! TTATCATGTGCCACTTTACA+GGG + Chr8:83516911-83516930 None:intergenic 35.0%
!! TTTATCATGTGCCACTTTAC+AGG + Chr8:83516912-83516931 None:intergenic 35.0%
!! TTTTGGAAGTATACCAGTGT+TGG - Chr8:83517593-83517612 MsG0880047221.01.T01:intron 35.0%
!!! ACTTGGTATTTTTTGTGGCT+AGG - Chr8:83514998-83515017 MsG0880047221.01.T01:three_prime_UTR 35.0%
!!! AGTAATGGGTTTTCTGACTA+TGG - Chr8:83516253-83516272 MsG0880047221.01.T01:intron 35.0%
!!! CTTCTGGTGTTTTAAAGGTT+GGG - Chr8:83517943-83517962 MsG0880047221.01.T01:CDS 35.0%
!!! GACCCTTTCTTTTTCAATGT+AGG - Chr8:83516782-83516801 MsG0880047221.01.T01:intron 35.0%
!!! TCTTCTGGTGTTTTAAAGGT+TGG - Chr8:83517942-83517961 MsG0880047221.01.T01:CDS 35.0%
!!! TGACCACTTGGTATTTTTTG+TGG - Chr8:83514993-83515012 MsG0880047221.01.T01:three_prime_UTR 35.0%
!!! TGTTTTGGCCTACTAATTCT+AGG + Chr8:83516391-83516410 None:intergenic 35.0%
AAACACACTATTCCAGCCTA+TGG + Chr8:83515788-83515807 None:intergenic 40.0%
AAAGCCTATACAGCAAAGTC+GGG - Chr8:83516424-83516443 MsG0880047221.01.T01:intron 40.0%
AAAGCTACTGGAAAATCTGG+AGG - Chr8:83516649-83516668 MsG0880047221.01.T01:CDS 40.0%
AAGCTTATTACCTGATGGGA+AGG + Chr8:83515643-83515662 None:intergenic 40.0%
ACATTATTCAGCTTTCGAGG+TGG + Chr8:83517621-83517640 None:intergenic 40.0%
ACCGCTTCTATTTACATCAC+TGG + Chr8:83516338-83516357 None:intergenic 40.0%
ACTTCTGGCAGCAAGATAAA+TGG - Chr8:83516874-83516893 MsG0880047221.01.T01:CDS 40.0%
ACTTGATCCAAGATCTCTAC+AGG - Chr8:83517974-83517993 MsG0880047221.01.T01:CDS 40.0%
AGAAAACCCATTACTCAACG+GGG + Chr8:83516248-83516267 None:intergenic 40.0%
AGGGTAAGCTTATTACCTGA+TGG + Chr8:83515648-83515667 None:intergenic 40.0%
ATGAAAAGGACATGCTTGGA+GGG - Chr8:83515957-83515976 MsG0880047221.01.T01:CDS 40.0%
ATGACACACAAGACACATAC+GGG + Chr8:83515118-83515137 None:intergenic 40.0%
ATGGGGCAAAACATTTCCAT+TGG + Chr8:83516203-83516222 None:intergenic 40.0%
CAAACGCAGTTTGTCAAAAG+AGG - Chr8:83515741-83515760 MsG0880047221.01.T01:CDS 40.0%
CAAAGCCTATACAGCAAAGT+CGG - Chr8:83516423-83516442 MsG0880047221.01.T01:intron 40.0%
CACTACATCTGTGGATGAAA+AGG - Chr8:83517758-83517777 MsG0880047221.01.T01:intron 40.0%
CAGAAAACCCATTACTCAAC+GGG + Chr8:83516249-83516268 None:intergenic 40.0%
CAGTATGACTAATCGAAGGA+AGG + Chr8:83516763-83516782 None:intergenic 40.0%
CATGAGGAATGGGTATTTGA+TGG + Chr8:83517428-83517447 None:intergenic 40.0%
CATTATCTGCACATGAGGAA+TGG + Chr8:83517439-83517458 None:intergenic 40.0%
CCAATTGATGTTGTCACAGT+CGG - Chr8:83517885-83517904 MsG0880047221.01.T01:CDS 40.0%
CCCAGTGATGTAAATAGAAG+CGG - Chr8:83516334-83516353 MsG0880047221.01.T01:intron 40.0%
CCGCTTCTATTTACATCACT+GGG + Chr8:83516337-83516356 None:intergenic 40.0%
CTTCCCAATTGTGATGCAAT+CGG + Chr8:83518105-83518124 None:intergenic 40.0%
GACTGTGCAAATCCATAGTT+AGG + Chr8:83515223-83515242 None:intergenic 40.0%
GATTTGAATCACCTGGTGAA+TGG - Chr8:83515020-83515039 MsG0880047221.01.T01:three_prime_UTR 40.0%
GCTTCTGTCAATAGACTTGA+TGG - Chr8:83515430-83515449 MsG0880047221.01.T01:three_prime_UTR 40.0%
GGGTAAGCTTATTACCTGAT+GGG + Chr8:83515647-83515666 None:intergenic 40.0%
GTAGAGATCTTGGATCAAGT+GGG + Chr8:83517974-83517993 None:intergenic 40.0%
GTCAATAGACTTGATGGAAG+AGG - Chr8:83515436-83515455 MsG0880047221.01.T01:three_prime_UTR 40.0%
GTGTCTTGTGTGTCATATGT+TGG - Chr8:83515122-83515141 MsG0880047221.01.T01:three_prime_UTR 40.0%
TATGAAAAGGACATGCTTGG+AGG - Chr8:83515956-83515975 MsG0880047221.01.T01:CDS 40.0%
TCAATGTAGGTTAATGCCAG+CGG - Chr8:83516795-83516814 MsG0880047221.01.T01:CDS 40.0%
TGCATCACAATTGGGAAGTT+GGG - Chr8:83518107-83518126 MsG0880047221.01.T01:CDS 40.0%
TGGTCCTGATATTCAGTACA+CGG - Chr8:83515072-83515091 MsG0880047221.01.T01:three_prime_UTR 40.0%
TGGTCCTGTTGACATCAATA+AGG - Chr8:83516845-83516864 MsG0880047221.01.T01:CDS 40.0%
TGTAGAGATCTTGGATCAAG+TGG + Chr8:83517975-83517994 None:intergenic 40.0%
TGTATACCTCTTGTGTGTCT+CGG + Chr8:83517004-83517023 None:intergenic 40.0%
TTCCCAATTGTGATGCAATC+GGG + Chr8:83518104-83518123 None:intergenic 40.0%
TTGATACAAGGCTAAACCGT+TGG - Chr8:83518165-83518184 MsG0880047221.01.T01:CDS 40.0%
TTGCATCACAATTGGGAAGT+TGG - Chr8:83518106-83518125 MsG0880047221.01.T01:CDS 40.0%
! AGAGTGCTTATGAAGATGCT+AGG - Chr8:83516623-83516642 MsG0880047221.01.T01:CDS 40.0%
! ATTTTGTGGAGTTGCTGAGA+TGG - Chr8:83516821-83516840 MsG0880047221.01.T01:CDS 40.0%
! CTCTTTTGACAAACTGCGTT+TGG + Chr8:83515743-83515762 None:intergenic 40.0%
! GAGGACCACCATAGAATTTT+TGG - Chr8:83515043-83515062 MsG0880047221.01.T01:three_prime_UTR 40.0%
! TGCAGTTTCTTGTTTCCATG+AGG + Chr8:83516604-83516623 None:intergenic 40.0%
! TTTGCCAAAGCATTAGCTCT+TGG + Chr8:83515562-83515581 None:intergenic 40.0%
!! AATGGAAGTGTTCCTAACAG+TGG - Chr8:83515595-83515614 MsG0880047221.01.T01:CDS 40.0%
!! GAATATGGTGTTGCCTTGTT+AGG - Chr8:83517159-83517178 MsG0880047221.01.T01:CDS 40.0%
AACTCCACAAAATTGACCGC+TGG + Chr8:83516814-83516833 None:intergenic 45.0%
AACTTTCATCTTGTGCACCC+TGG + Chr8:83515180-83515199 None:intergenic 45.0%
ACCTCATCCTTAAGTCTTGC+TGG - Chr8:83518028-83518047 MsG0880047221.01.T01:CDS 45.0%
ACTATTCCAGCCTATGGCTA+TGG + Chr8:83515782-83515801 None:intergenic 45.0%
ATCAGACAAGTTCCTTCCTC+AGG - Chr8:83515524-83515543 MsG0880047221.01.T01:CDS 45.0%
ATGCCCGATTGCATCACAAT+TGG - Chr8:83518098-83518117 MsG0880047221.01.T01:CDS 45.0%
CCGACTGTGACAACATCAAT+TGG + Chr8:83517888-83517907 None:intergenic 45.0%
CCTCATCCTTAAGTCTTGCT+GGG - Chr8:83518029-83518048 MsG0880047221.01.T01:CDS 45.0%
CGCTAGAAAGATCCATCCAA+CGG + Chr8:83518184-83518203 None:intergenic 45.0%
CTAGCCTACAATACCACAGA+AGG + Chr8:83516142-83516161 None:intergenic 45.0%
CTCACCGTGTACTGAATATC+AGG + Chr8:83515079-83515098 None:intergenic 45.0%
CTCATCCTTAAGTCTTGCTG+GGG - Chr8:83518030-83518049 MsG0880047221.01.T01:CDS 45.0%
GATGCTAGGAGAAAAGCTAC+TGG - Chr8:83516637-83516656 MsG0880047221.01.T01:CDS 45.0%
GGCAGCAAGATAAATGGAGT+GGG - Chr8:83516880-83516899 MsG0880047221.01.T01:CDS 45.0%
GGGTCAGTATGACTAATCGA+AGG + Chr8:83516767-83516786 None:intergenic 45.0%
GTTTCGTCTCTACCTGTCTT+GGG + Chr8:83517851-83517870 None:intergenic 45.0%
TACAAGGCTAAACCGTTGGA+TGG - Chr8:83518169-83518188 MsG0880047221.01.T01:CDS 45.0%
TCAACTCCAATCATAGCACC+TGG + Chr8:83515274-83515293 None:intergenic 45.0%
TCAGACAAGTTCCTTCCTCA+GGG - Chr8:83515525-83515544 MsG0880047221.01.T01:CDS 45.0%
TCGCTGGCAGACATAATATG+CGG + Chr8:83518242-83518261 None:intergenic 45.0%
TGAGCATGTCAAATCAGTGC+TGG - Chr8:83515693-83515712 MsG0880047221.01.T01:CDS 45.0%
TGCCCGATTGCATCACAATT+GGG - Chr8:83518099-83518118 MsG0880047221.01.T01:CDS 45.0%
TGGCAGCAAGATAAATGGAG+TGG - Chr8:83516879-83516898 MsG0880047221.01.T01:CDS 45.0%
TGGCTAGGATTTGAATCACC+TGG - Chr8:83515013-83515032 MsG0880047221.01.T01:three_prime_UTR 45.0%
TTCATCCACAGATGTAGTGC+TGG + Chr8:83517757-83517776 None:intergenic 45.0%
TTTCGTCTCTACCTGTCTTG+GGG + Chr8:83517850-83517869 None:intergenic 45.0%
! AATGCCAGCGGTCAATTTTG+TGG - Chr8:83516807-83516826 MsG0880047221.01.T01:CDS 45.0%
! ATCTCCCGACTTTGCTGTAT+AGG + Chr8:83516431-83516450 None:intergenic 45.0%
! GGTGCTATGATTGGAGTTGA+TGG - Chr8:83515274-83515293 MsG0880047221.01.T01:three_prime_UTR 45.0%
! TGTCGGTTATAAATGCTCCC+AGG + Chr8:83517075-83517094 None:intergenic 45.0%
!! AATGTGGGTTCGTCGACTTT+AGG - Chr8:83517349-83517368 MsG0880047221.01.T01:intron 45.0%
!! GGAGTTGATGGTTCATTTGG+AGG - Chr8:83515286-83515305 MsG0880047221.01.T01:three_prime_UTR 45.0%
!! GGGGTTTTGATAATTGGGGA+GGG + Chr8:83515329-83515348 None:intergenic 45.0%
!! TGGGGTTTTGATAATTGGGG+AGG + Chr8:83515330-83515349 None:intergenic 45.0%
!!! CAGCTTCTGCTGCTTTTACT+AGG - Chr8:83515479-83515498 MsG0880047221.01.T01:CDS 45.0%
AAACCGACAGAAGGTCATGC+AGG - Chr8:83517542-83517561 MsG0880047221.01.T01:intron 50.0%
AAGTCTTGCTGGGGATGTCT+AGG - Chr8:83518039-83518058 MsG0880047221.01.T01:CDS 50.0%
AGATCTCTACAGGCAGGCAA+AGG - Chr8:83517984-83518003 MsG0880047221.01.T01:CDS 50.0%
AGTCACCATTACCCCAAGAC+AGG - Chr8:83517836-83517855 MsG0880047221.01.T01:CDS 50.0%
ATCGGGGCCCTAGAATTAGT+AGG - Chr8:83516380-83516399 MsG0880047221.01.T01:intron 50.0%
CCCAGCAAGACTTAAGGATG+AGG + Chr8:83518032-83518051 None:intergenic 50.0%
CTCTACCTGTCTTGGGGTAA+TGG + Chr8:83517844-83517863 None:intergenic 50.0%
CTGGGAGCAACATGAACCTT+TGG + Chr8:83516319-83516338 None:intergenic 50.0%
GACAAACTGCGTTTGGCAGA+TGG + Chr8:83515736-83515755 None:intergenic 50.0%
GACATCCCCAGCAAGACTTA+AGG + Chr8:83518038-83518057 None:intergenic 50.0%
GATCCAAGATCTCTACAGGC+AGG - Chr8:83517978-83517997 MsG0880047221.01.T01:CDS 50.0%
GGTTTCGTCTCTACCTGTCT+TGG + Chr8:83517852-83517871 None:intergenic 50.0%
GTGTCTCGGCTGTTAGTTAC+AGG + Chr8:83516990-83517009 None:intergenic 50.0%
GTGTGGTCATCAACACCTCA+TGG - Chr8:83516586-83516605 MsG0880047221.01.T01:CDS 50.0%
TAACAGCCGAGACACACAAG+AGG - Chr8:83516995-83517014 MsG0880047221.01.T01:CDS 50.0%
TGAATCACCTGGTGAATGGG+AGG - Chr8:83515024-83515043 MsG0880047221.01.T01:three_prime_UTR 50.0%
TGCTTCATCACCTTCCCATC+AGG - Chr8:83515630-83515649 MsG0880047221.01.T01:CDS 50.0%
TGTCACCAGCACTACATCTG+TGG - Chr8:83517749-83517768 MsG0880047221.01.T01:intron 50.0%
TGTGGAGTTGCTGAGATGGT+TGG - Chr8:83516825-83516844 MsG0880047221.01.T01:CDS 50.0%
TTGCCTGCCTGTAGAGATCT+TGG + Chr8:83517984-83518003 None:intergenic 50.0%
TTGTCAAAAGAGGCCTGTCG+TGG - Chr8:83515751-83515770 MsG0880047221.01.T01:CDS 50.0%
! CTTTAGGAGGGTCTTCAGCT+TGG - Chr8:83517365-83517384 MsG0880047221.01.T01:intron 50.0%
!! ATGTCAAATCAGTGCTGGCG+TGG - Chr8:83515698-83515717 MsG0880047221.01.T01:CDS 50.0%
!! TGGGTTCGTCGACTTTAGGA+GGG - Chr8:83517353-83517372 MsG0880047221.01.T01:intron 50.0%
CAACCTCGCGAATTGTTCGC+TGG + Chr8:83518258-83518277 None:intergenic 55.0%
CAAGACACATACGGGCAGAG+AGG + Chr8:83515110-83515129 None:intergenic 55.0%
CCTCCTGCATGACCTTCTGT+CGG + Chr8:83517548-83517567 None:intergenic 55.0%
GAGCTGCCCCGTTGAGTAAT+GGG - Chr8:83516239-83516258 MsG0880047221.01.T01:intron 55.0%
GGGGCCAAGAGCTAATGCTT+TGG - Chr8:83515555-83515574 MsG0880047221.01.T01:CDS 55.0%
GTGGGAGCTTCCCTGTAAAG+TGG - Chr8:83516898-83516917 MsG0880047221.01.T01:CDS 55.0%
! AGCATTAGCTCTTGGCCCCT+CGG + Chr8:83515554-83515573 None:intergenic 55.0%
!! GTGGGTTCGTCGACTTTAGG+AGG - Chr8:83517352-83517371 MsG0880047221.01.T01:intron 55.0%
CCGACAGAAGGTCATGCAGG+AGG - Chr8:83517545-83517564 MsG0880047221.01.T01:intron 60.0%
CGTGGCAGTGCCATAGCCAT+AGG - Chr8:83515769-83515788 MsG0880047221.01.T01:CDS 60.0%
CTGCCAGCGAACAATTCGCG+AGG - Chr8:83518252-83518271 MsG0880047221.01.T01:CDS 60.0%
GCAGTGCCATAGCCATAGGC+TGG - Chr8:83515773-83515792 MsG0880047221.01.T01:CDS 60.0%
GGAGCTGCCCCGTTGAGTAA+TGG - Chr8:83516238-83516257 MsG0880047221.01.T01:intron 60.0%
TGGTGGTCCTCCCATTCACC+AGG + Chr8:83515034-83515053 None:intergenic 60.0%
TTTCGAGGTGGCGCCAACAC+TGG + Chr8:83517609-83517628 None:intergenic 60.0%
! GCATTAGCTCTTGGCCCCTC+GGG + Chr8:83515553-83515572 None:intergenic 60.0%
! TCCTTCCTCAGGGTACCCGA+GGG - Chr8:83515535-83515554 MsG0880047221.01.T01:CDS 60.0%
! TTCCTTCCTCAGGGTACCCG+AGG - Chr8:83515534-83515553 MsG0880047221.01.T01:CDS 60.0%
GGCTATGGCACTGCCACGAC+AGG + Chr8:83515767-83515786 None:intergenic 65.0%
! CCTTCCTCAGGGTACCCGAG+GGG - Chr8:83515536-83515555 MsG0880047221.01.T01:CDS 65.0%
CCCCTCGGGTACCCTGAGGA+AGG + Chr8:83515539-83515558 None:intergenic 70.0%
TTGGCCCCTCGGGTACCCTG+AGG + Chr8:83515543-83515562 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 83514992 83518494 83514992 ID=MsG0880047221.01;Name=MsG0880047221.01
Chr8 mRNA 83514992 83518494 83514992 ID=MsG0880047221.01.T01;Parent=MsG0880047221.01;Name=MsG0880047221.01.T01;_AED=0.47;_eAED=0.47;_QI=0|1|0.8|1|1|1|5|466|633
Chr8 exon 83514992 83516033 83514992 ID=MsG0880047221.01.T01:exon:20736;Parent=MsG0880047221.01.T01
Chr8 exon 83516470 83516682 83516470 ID=MsG0880047221.01.T01:exon:20735;Parent=MsG0880047221.01.T01
Chr8 exon 83516790 83517329 83516790 ID=MsG0880047221.01.T01:exon:20734;Parent=MsG0880047221.01.T01
Chr8 exon 83517835 83518305 83517835 ID=MsG0880047221.01.T01:exon:20733;Parent=MsG0880047221.01.T01
Chr8 exon 83518393 83518494 83518393 ID=MsG0880047221.01.T01:exon:20732;Parent=MsG0880047221.01.T01
Chr8 CDS 83518393 83518494 83518393 ID=MsG0880047221.01.T01:cds;Parent=MsG0880047221.01.T01
Chr8 CDS 83517835 83518305 83517835 ID=MsG0880047221.01.T01:cds;Parent=MsG0880047221.01.T01
Chr8 CDS 83516790 83517329 83516790 ID=MsG0880047221.01.T01:cds;Parent=MsG0880047221.01.T01
Chr8 CDS 83516470 83516682 83516470 ID=MsG0880047221.01.T01:cds;Parent=MsG0880047221.01.T01
Chr8 CDS 83515458 83516033 83515458 ID=MsG0880047221.01.T01:cds;Parent=MsG0880047221.01.T01
Chr8 three_prime_UTR 83514992 83515457 83514992 ID=MsG0880047221.01.T01:three_prime_utr;Parent=MsG0880047221.01.T01
Gene Sequence

>MsG0880047221.01.T01

TTGACCACTTGGTATTTTTTGTGGCTAGGATTTGAATCACCTGGTGAATGGGAGGACCACCATAGAATTTTTGGTGTAGATGGTCCTGATATTCAGTACACGGGTGCACAAGATGAAAGTTTTCCTTATGTATATTACACACCTAACTATGGATTTGCACAGTCTCCATACAATCCATACAATCCTTATATTCCAGGTGCTATGATTGGAGTTGATGGTTCATTTGGAGGAGAACAGCAGTATTACTCCCTCCCCAATTATCAAAACCCCATTTCTTCGCCAACTTATATTCCTCTTGTTCAACCAGACAATTTTCATCATAGTTCTGTTGACTCATTATATGATAACAGTGCTTCTGTCAATAGACTTGATGGAAGAGGTTCGAAGCATAAGTTCAATTCAGCTTCTGCTGCTTTTACTAGGAACTCTTCAAAACCATCATCAAATCAGACAAGTTCCTTCCTCAGGGTACCCGAGGGGCCAAGAGCTAATGCTTTGGCAAAGAAAGATTCGACAAATGGAAGTGTTCCTAACAGTGGTTTTCTTAATTTTGCTTCATCACCTTCCCATCAGGCTAGAAGTGCTGATGTCTCATTCCAGTCTGTAGATACTTTTTCCAATGGAAATGTTTTGCCCCATCATAATCAATTCAAAGGAGCTGCCCCGTTGAGTAATGGGTTTTCTGACTATGGATCTAATGCTAATGGGCAGTCTGCAATTGCTAAACTTCGACCAAAGGTTCATGTTGCTCCCAGTGATGTAAATAGAAGCGGTGATGTATTATTGGGTGAACAAAATCGGGGCCCTAGAATTAGTAGGCCAAAACATCATCTGCCTATCAAAGCCTATACAGCAAAGTCGGGAGATGCTAACTCACAAGAGAACGTCATTTATACTGATCAATATAACAGGGAGGACTTCCCTATTGACAATGAAATTGCTAAGTTTTTTGTTATAAAATCATACAGTGAGGATGACGTTCACAAAAGCATTAAATATAACGTGTGGTCATCAACACCTCATGGAAACAAGAAACTGCAGAGTGCTTATGAAGATGCTAGGAGAAAAGCTACTGGAAAATCTGGAGGCTGTCCTATCTTTCTTTTCTTTTCGGTTAATGCCAGCGGTCAATTTTGTGGAGTTGCTGAGATGGTTGGTCCTGTTGACATCAATAAGGATATGGACTTCTGGCAGCAAGATAAATGGAGTGGGAGCTTCCCTGTAAAGTGGCACATGATAAAAGATGTGCCAAATGGAAATTTTAGGCACATAATACTAGAGAACAATGAGTTCAAGCCTGTAACTAACAGCCGAGACACACAAGAGATAATGTATAGAAAGGGTCTGGAAATGCTGAAGATATTCAAAAATTATACTTTGAAGACATCTTTGCTTGATGACTTTATTTACTATGAAAACCGACAGAAGGTCATGCAGGAGGAGAAAACTAAGTTTCTAATGAAGGGTTTTGGAAGTATACCAGTGTTGGCGCCACCTCGAAAGCTGAATAATGTTTTTGAAATTCATCCTGCAAGTGATGAGAAAAATTTAAAGACAGATGAACTTGGTAGCGTAAAACATACTTCAATTTCAAATGCGGCACATACTGTTAATAGTTCTGATGTCACCAGCACTACATCTGTGGATGAAAAGGTTGAGAATGATGTGGTTGACAAGCAAGATATTTCTTCTGTTCTGAATATTGGTTCAGTCACCATTACCCCAAGACAGGTAGAGACGAAACCATCTAATACAGAACCAATTGATGTTGTCACAGTCGGCTCAATGCAAGTCAGAGTTAATGGATTTTCTGAGTCTTCTGGTGTTTTAAAGGTTGGGAGTATCCCACTTGATCCAAGATCTCTACAGGCAGGCAAAGGAACCACTTACATCAAAACTTGA
Protein sequence

>MsG0880047221.01.T01

LTTWYFLWLGFESPGEWEDHHRIFGVDGPDIQYTGAQDESFPYVYYTPNYGFAQSPYNPYNPYIPGAMIGVDGSFGGEQQYYSLPNYQNPISSPTYIPLVQPDNFHHSSVDSLYDNSASVNRLDGRGSKHKFNSASAAFTRNSSKPSSNQTSSFLRVPEGPRANALAKKDSTNGSVPNSGFLNFASSPSHQARSADVSFQSVDTFSNGNVLPHHNQFKGAAPLSNGFSDYGSNANGQSAIAKLRPKVHVAPSDVNRSGDVLLGEQNRGPRISRPKHHLPIKAYTAKSGDANSQENVIYTDQYNREDFPIDNEIAKFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLQSAYEDARRKATGKSGGCPIFLFFSVNASGQFCGVAEMVGPVDINKDMDFWQQDKWSGSFPVKWHMIKDVPNGNFRHIILENNEFKPVTNSRDTQEIMYRKGLEMLKIFKNYTLKTSLLDDFIYYENRQKVMQEEKTKFLMKGFGSIPVLAPPRKLNNVFEIHPASDEKNLKTDELGSVKHTSISNAAHTVNSSDVTSTTSVDEKVENDVVDKQDISSVLNIGSVTITPRQVETKPSNTEPIDVVTVGSMQVRVNGFSESSGVLKVGSIPLDPRSLQAGKGTTYIKT*