Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001440 | Msa0380290 | 0.892160 | 2.049775e-74 | -8.615850e-47 |
| Msa0001440 | Msa0524490 | 0.837355 | 5.458659e-57 | -8.615850e-47 |
| Msa0001440 | Msa0706690 | 0.824473 | 7.921341e-54 | -8.615850e-47 |
| Msa0001440 | Msa1196210 | -0.841536 | 4.476470e-58 | -8.615850e-47 |
| Msa0001440 | Msa1343460 | 0.827354 | 1.638900e-54 | -8.615850e-47 |
| Msa0001440 | Msa1367580 | 0.995443 | 2.540167e-216 | -8.615850e-47 |
| Msa0001440 | Msa1371270 | 0.825898 | 3.646616e-54 | -8.615850e-47 |
| Msa0001440 | Msa1409060 | 0.812476 | 4.159900e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001440 | MtrunA17_Chr3g0145751 | 93.793 | 145 | 3 | 3 | 1 | 145 | 1 | 139 | 2.80e-93 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001440 | AT3G07580.1 | 39.865 | 148 | 66 | 9 | 25 | 170 | 10 | 136 | 1.23e-19 | 80.9 |
| Msa0001440 | AT3G07580.2 | 41.935 | 124 | 49 | 9 | 25 | 146 | 10 | 112 | 1.45e-15 | 69.7 |
| Msa0001440 | AT5G48335.1 | 43.443 | 122 | 43 | 5 | 24 | 144 | 18 | 114 | 6.57e-15 | 67.8 |
Find 60 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCACAGCTTGACTTTC+TGG | 0.027355 | 1_1:+3151820 | Msa0001440:CDS |
| TACATTAGGACTTATATTTA+AGG | 0.159684 | 1_1:+3152093 | Msa0001440:three_prime_UTR |
| CTTTCTCTTTCTGCTTCTGC+TGG | 0.246256 | 1_1:+3149191 | Msa0001440:five_prime_UTR |
| CAATGAATCTTCTTGAATAA+TGG | 0.279902 | 1_1:-3150336 | None:intergenic |
| CCACTAACCAGATGAATCTT+TGG | 0.290343 | 1_1:-3150856 | None:intergenic |
| AGAAGATTCATTGCTTTAGA+AGG | 0.326176 | 1_1:+3150346 | Msa0001440:CDS |
| TGAATCTTTGGGATTGTTGT+AGG | 0.326660 | 1_1:-3150844 | None:intergenic |
| GGAACCGTTCTATCAATAAT+AGG | 0.344648 | 1_1:+3149375 | Msa0001440:CDS |
| GATAGAACGGTTCCTTTGAT+TGG | 0.354075 | 1_1:-3149366 | None:intergenic |
| GTGTCACAGCTTGACTTTCT+GGG | 0.362844 | 1_1:+3151821 | Msa0001440:CDS |
| TAGGATTGGCACTGTGCATT+TGG | 0.363887 | 1_1:-3151856 | None:intergenic |
| ATTCTGGTGGGACCTCAGTT+TGG | 0.371991 | 1_1:+3151616 | Msa0001440:CDS |
| CAAGCTCAGCCACCGGAATC+TGG | 0.379086 | 1_1:+3149311 | Msa0001440:CDS |
| GAATTGCAATATCTTACATT+AGG | 0.381475 | 1_1:+3152079 | Msa0001440:three_prime_UTR |
| CGAAGTTACAAAATCACAAA+TGG | 0.387457 | 1_1:-3151992 | None:intergenic |
| CACTAACCAGATGAATCTTT+GGG | 0.397232 | 1_1:-3150855 | None:intergenic |
| ATAGAACGGTTCCTTTGATT+GGG | 0.430840 | 1_1:-3149365 | None:intergenic |
| TTTCTCTTTCTGCTTCTGCT+GGG | 0.448802 | 1_1:+3149192 | Msa0001440:five_prime_UTR |
| AAGAAGAGACTGAGAGTCAG+AGG | 0.454007 | 1_1:+3149257 | Msa0001440:five_prime_UTR |
| GTCCCACCAGAATACATAAC+TGG | 0.456812 | 1_1:-3151606 | None:intergenic |
| GAAAATAAGGACAAAATAGT+TGG | 0.469040 | 1_1:-3152235 | None:intergenic |
| TCAGTTCAGACTCCCTCATC+AGG | 0.470456 | 1_1:+3151641 | Msa0001440:CDS |
| AACAATCCCAAAGATTCATC+TGG | 0.471111 | 1_1:+3150849 | Msa0001440:CDS |
| ACAAATGGGTAGTCAAGTAA+AGG | 0.483918 | 1_1:-3151977 | None:intergenic |
| TAAATAAAGCTTACCTGATG+AGG | 0.484449 | 1_1:-3151654 | None:intergenic |
| GAAGAGGAAGCACTCGCAGC+TGG | 0.484647 | 1_1:-3151797 | None:intergenic |
| CAAATGGGTAGTCAAGTAAA+GGG | 0.492979 | 1_1:-3151976 | None:intergenic |
| ACCACCACAGGACCAGATTC+CGG | 0.497624 | 1_1:-3149323 | None:intergenic |
| AATAGGCGGAAATCATCATC+TGG | 0.506410 | 1_1:+3149392 | Msa0001440:CDS |
| ACTCACGATCACTAAGAAGC+TGG | 0.511171 | 1_1:-3150390 | None:intergenic |
| TCCGCCTATTATTGATAGAA+CGG | 0.520342 | 1_1:-3149379 | None:intergenic |
| ATCCATCATGTGCTGAAACT+AGG | 0.524448 | 1_1:-3151875 | None:intergenic |
| GAAGTTACAAAATCACAAAT+GGG | 0.528232 | 1_1:-3151991 | None:intergenic |
| ACAAAATAGTTGGTTCATGT+AGG | 0.539542 | 1_1:-3152225 | None:intergenic |
| AACATTCAAGTTACAGATCA+CGG | 0.540516 | 1_1:+3150280 | Msa0001440:CDS |
| TAGCGCTTCACCACCACCAC+AGG | 0.546744 | 1_1:-3149335 | None:intergenic |
| TGAGCTTGAGCTTGAGCGTG+AGG | 0.552238 | 1_1:-3149296 | None:intergenic |
| ATCCTAGTTTCAGCACATGA+TGG | 0.552536 | 1_1:+3151873 | Msa0001440:CDS |
| TCAAGCTCAAGCTCAGCCAC+CGG | 0.553933 | 1_1:+3149304 | Msa0001440:CDS |
| AAATAAAGCTTACCTGATGA+GGG | 0.555627 | 1_1:-3151653 | None:intergenic |
| TCATGTGCTGAAACTAGGAT+TGG | 0.568680 | 1_1:-3151870 | None:intergenic |
| GTCAAGCTGTGACACAGAAG+AGG | 0.569534 | 1_1:-3151813 | None:intergenic |
| GGAATCTGGTCCTGTGGTGG+TGG | 0.575807 | 1_1:+3149325 | Msa0001440:CDS |
| CTTGATCGATCAAACAGTGT+TGG | 0.579556 | 1_1:+3150220 | Msa0001440:CDS |
| TAGTTTCAGCACATGATGGA+TGG | 0.583477 | 1_1:+3151877 | Msa0001440:exon |
| GCTATGCTCCGCCCAATCAA+AGG | 0.584395 | 1_1:+3149354 | Msa0001440:CDS |
| CTCACGATCACTAAGAAGCT+GGG | 0.587411 | 1_1:-3150389 | None:intergenic |
| GAACGGTTCCTTTGATTGGG+CGG | 0.595000 | 1_1:-3149362 | None:intergenic |
| GCCACCGGAATCTGGTCCTG+TGG | 0.595031 | 1_1:+3149319 | Msa0001440:CDS |
| AAACCAGTTATGTATTCTGG+TGG | 0.598244 | 1_1:+3151603 | Msa0001440:CDS |
| GAGCTTGAGCTTGAGCGTGA+GGG | 0.601515 | 1_1:-3149295 | None:intergenic |
| TCAGCACATGATGGATGGCA+TGG | 0.602398 | 1_1:+3151882 | Msa0001440:exon |
| ACCGGAATCTGGTCCTGTGG+TGG | 0.616133 | 1_1:+3149322 | Msa0001440:CDS |
| ATTGCAATTCACACCTACAC+AGG | 0.627927 | 1_1:-3152066 | None:intergenic |
| AGAAGAGACTGAGAGTCAGA+GGG | 0.632966 | 1_1:+3149258 | Msa0001440:five_prime_UTR |
| AACCAGTTATGTATTCTGGT+GGG | 0.640003 | 1_1:+3151604 | Msa0001440:CDS |
| AATATGTGTGACGCCTGTGT+AGG | 0.649218 | 1_1:+3152053 | Msa0001440:three_prime_UTR |
| ACCGTTCTATCAATAATAGG+CGG | 0.659459 | 1_1:+3149378 | Msa0001440:CDS |
| ACCACAGGACCAGATTCCGG+TGG | 0.684814 | 1_1:-3149320 | None:intergenic |
| TCTGAACTGAGTCCAAACTG+AGG | 0.739116 | 1_1:-3151628 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATAAATAAAGCAT+CGG | - | chr1_1:3149549-3149568 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | - | chr1_1:3150054-3150073 | None:intergenic | 10.0% |
| !! | AGTAAAGAATTAAAGAAAAA+AGG | - | chr1_1:3149446-3149465 | None:intergenic | 15.0% |
| !! | CACAAAAAACAAAAAAAAAA+AGG | - | chr1_1:3151055-3151074 | None:intergenic | 15.0% |
| !!! | TTACATTGATTGAAGTAAAA+AGG | - | chr1_1:3149691-3149710 | None:intergenic | 20.0% |
| !! | TTATGTGCCTATAATTTATA+GGG | - | chr1_1:3149756-3149775 | None:intergenic | 20.0% |
| !! | TTCTATCAAATTATGTAGAT+CGG | + | chr1_1:3150197-3150216 | Msa0001440:intron | 20.0% |
| !!! | TTTTTTGTTTTTTGTGTGTT+TGG | + | chr1_1:3151059-3151078 | Msa0001440:intron | 20.0% |
| !!! | TTACTTTTTAATCATCTTTG+TGG | + | chr1_1:3151376-3151395 | Msa0001440:intron | 20.0% |
| !! | ATAAATAATATACGCTCAAA+TGG | - | chr1_1:3151450-3151469 | None:intergenic | 20.0% |
| !! | TTGAGCGTATATTATTTATA+CGG | + | chr1_1:3151451-3151470 | Msa0001440:intron | 20.0% |
| !! | AAGATCATGTTAGATTTAAA+AGG | - | chr1_1:3151746-3151765 | None:intergenic | 20.0% |
| !! | TACATTAGGACTTATATTTA+AGG | + | chr1_1:3152093-3152112 | Msa0001440:three_prime_UTR | 20.0% |
| !!! | GTTTTGATAATTTAAATGCA+TGG | + | chr1_1:3152153-3152172 | Msa0001440:three_prime_UTR | 20.0% |
| ! | AGATAGAATTAGAGTTAGTT+GGG | - | chr1_1:3149653-3149672 | None:intergenic | 25.0% |
| ! | AAGATAGAATTAGAGTTAGT+TGG | - | chr1_1:3149654-3149673 | None:intergenic | 25.0% |
| ! | TGTATCATCATCCTAAATAA+TGG | + | chr1_1:3149711-3149730 | Msa0001440:intron | 25.0% |
| ! | CTTATGTGCCTATAATTTAT+AGG | - | chr1_1:3149757-3149776 | None:intergenic | 25.0% |
| !!! | GAACTATTAGTTTGTATTGT+TGG | + | chr1_1:3149790-3149809 | Msa0001440:intron | 25.0% |
| ! | CAATGAATCTTCTTGAATAA+TGG | - | chr1_1:3150339-3150358 | None:intergenic | 25.0% |
| !! | TGTCTAATATTTAGTGTTGA+TGG | + | chr1_1:3150925-3150944 | Msa0001440:intron | 25.0% |
| !!! | GAATCATTTCATAGTTTTAC+TGG | - | chr1_1:3151006-3151025 | None:intergenic | 25.0% |
| ! | TAGTCAATTAAAGAAAGAAC+TGG | - | chr1_1:3151088-3151107 | None:intergenic | 25.0% |
| ! | TTGACTAATTACTATAAGCT+TGG | + | chr1_1:3151101-3151120 | Msa0001440:intron | 25.0% |
| !!! | AAGGAACAACATATTTTAGT+TGG | - | chr1_1:3151203-3151222 | None:intergenic | 25.0% |
| ! | AAACACTAATGAACTGTATA+AGG | - | chr1_1:3151222-3151241 | None:intergenic | 25.0% |
| ! | TATAGTTTCTAAATTGCTGT+TGG | + | chr1_1:3151410-3151429 | Msa0001440:intron | 25.0% |
| !! | ATAGTTTCTAAATTGCTGTT+GGG | + | chr1_1:3151411-3151430 | Msa0001440:intron | 25.0% |
| ! | GAAGTTACAAAATCACAAAT+GGG | - | chr1_1:3151994-3152013 | None:intergenic | 25.0% |
| !! | CATTTGTGATTTTGTAACTT+CGG | + | chr1_1:3151993-3152012 | Msa0001440:three_prime_UTR | 25.0% |
| ! | GAATTGCAATATCTTACATT+AGG | + | chr1_1:3152079-3152098 | Msa0001440:three_prime_UTR | 25.0% |
| !! | TAATAAATAAAGCATCGGAC+AGG | - | chr1_1:3149544-3149563 | None:intergenic | 30.0% |
| ! | TGAGATTTGAAGTAGTTAGT+TGG | - | chr1_1:3149626-3149645 | None:intergenic | 30.0% |
| ! | CATCATCCTAAATAATGGAA+CGG | + | chr1_1:3149716-3149735 | Msa0001440:intron | 30.0% |
| ACATATTGGTATTCAACTCA+AGG | - | chr1_1:3149874-3149893 | None:intergenic | 30.0% | |
| ! | TGAGTTGAATACCAATATGT+TGG | + | chr1_1:3149874-3149893 | Msa0001440:intron | 30.0% |
| ! | GAACTTTTACATAGATCTGA+TGG | - | chr1_1:3149982-3150001 | None:intergenic | 30.0% |
| AGAAACAAACAAAATAGAGC+AGG | - | chr1_1:3150156-3150175 | None:intergenic | 30.0% | |
| ! | AACATTCAAGTTACAGATCA+CGG | + | chr1_1:3150280-3150299 | Msa0001440:CDS | 30.0% |
| ! | AGAAGATTCATTGCTTTAGA+AGG | + | chr1_1:3150346-3150365 | Msa0001440:CDS | 30.0% |
| TACAAGTTCTCACAAACAAA+AGG | - | chr1_1:3150424-3150443 | None:intergenic | 30.0% | |
| TTGTGAGAACTTGTATATGT+TGG | + | chr1_1:3150429-3150448 | Msa0001440:intron | 30.0% | |
| AAGAACTACAGAAATCATCA+GGG | - | chr1_1:3150484-3150503 | None:intergenic | 30.0% | |
| AAAGAACTACAGAAATCATC+AGG | - | chr1_1:3150485-3150504 | None:intergenic | 30.0% | |
| GATGATTTCTGTAGTTCTTT+AGG | + | chr1_1:3150485-3150504 | Msa0001440:intron | 30.0% | |
| !! | TACCTTCAATTAGTTTGCAT+AGG | + | chr1_1:3150554-3150573 | Msa0001440:intron | 30.0% |
| ATCCTATGCAAACTAATTGA+AGG | - | chr1_1:3150559-3150578 | None:intergenic | 30.0% | |
| ! | GATTGAGATATGCAGATTTT+AGG | + | chr1_1:3150576-3150595 | Msa0001440:intron | 30.0% |
| !!! | ATATGCAGATTTTAGGACTT+AGG | + | chr1_1:3150583-3150602 | Msa0001440:intron | 30.0% |
| GGAACAATTAACGAAACAAA+AGG | - | chr1_1:3150664-3150683 | None:intergenic | 30.0% | |
| CAGTTAAAATACGAAAAGAC+AGG | - | chr1_1:3150685-3150704 | None:intergenic | 30.0% | |
| CAACAGGTAATGTTAATCAA+TGG | - | chr1_1:3150782-3150801 | None:intergenic | 30.0% | |
| CAAATTTCATAGCATGGAAA+AGG | - | chr1_1:3150901-3150920 | None:intergenic | 30.0% | |
| ATACAGTTCATTAGTGTTTG+AGG | + | chr1_1:3151223-3151242 | Msa0001440:intron | 30.0% | |
| TGAACTACATCAAAACACTT+TGG | - | chr1_1:3151316-3151335 | None:intergenic | 30.0% | |
| TACTATCACCACATTTAAGA+AGG | - | chr1_1:3151500-3151519 | None:intergenic | 30.0% | |
| TATGTGCTACATATACTCTT+AGG | + | chr1_1:3151523-3151542 | Msa0001440:intron | 30.0% | |
| !!! | GTTTTTCTGAAATTCGAAAG+AGG | - | chr1_1:3151587-3151606 | None:intergenic | 30.0% |
| GAAAAACCAGTTATGTATTC+TGG | + | chr1_1:3151600-3151619 | Msa0001440:intron | 30.0% | |
| AAATAAAGCTTACCTGATGA+GGG | - | chr1_1:3151656-3151675 | None:intergenic | 30.0% | |
| TAAATAAAGCTTACCTGATG+AGG | - | chr1_1:3151657-3151676 | None:intergenic | 30.0% | |
| GTTAGATTTAAAAGGCAGAA+GGG | - | chr1_1:3151738-3151757 | None:intergenic | 30.0% | |
| TGTTAGATTTAAAAGGCAGA+AGG | - | chr1_1:3151739-3151758 | None:intergenic | 30.0% | |
| CGAAGTTACAAAATCACAAA+TGG | - | chr1_1:3151995-3152014 | None:intergenic | 30.0% | |
| ! | ACAAAATAGTTGGTTCATGT+AGG | - | chr1_1:3152228-3152247 | None:intergenic | 30.0% |
| ATAGAACGGTTCCTTTGATT+GGG | - | chr1_1:3149368-3149387 | None:intergenic | 35.0% | |
| GGAACCGTTCTATCAATAAT+AGG | + | chr1_1:3149375-3149394 | Msa0001440:CDS | 35.0% | |
| ACCGTTCTATCAATAATAGG+CGG | + | chr1_1:3149378-3149397 | Msa0001440:CDS | 35.0% | |
| TCCGCCTATTATTGATAGAA+CGG | - | chr1_1:3149382-3149401 | None:intergenic | 35.0% | |
| AGTTGGAGGAAAGCAAATAA+GGG | - | chr1_1:3149609-3149628 | None:intergenic | 35.0% | |
| TAGTTGGAGGAAAGCAAATA+AGG | - | chr1_1:3149610-3149629 | None:intergenic | 35.0% | |
| ! | GATTTGAAGTAGTTAGTTGG+AGG | - | chr1_1:3149623-3149642 | None:intergenic | 35.0% |
| ! | CTAAATAATGGAACGGATCT+GGG | + | chr1_1:3149723-3149742 | Msa0001440:intron | 35.0% |
| ACTGGGACCCTATAAATTAT+AGG | + | chr1_1:3149746-3149765 | Msa0001440:intron | 35.0% | |
| AGTTTGTATTGTTGGATCAG+TGG | + | chr1_1:3149798-3149817 | Msa0001440:intron | 35.0% | |
| TTAACTCACGATAACAGTGT+TGG | + | chr1_1:3149841-3149860 | Msa0001440:intron | 35.0% | |
| CTGCTTATTGCATTATAGTG+AGG | + | chr1_1:3150702-3150721 | Msa0001440:intron | 35.0% | |
| TATTGCATTATAGTGAGGAG+TGG | + | chr1_1:3150707-3150726 | Msa0001440:intron | 35.0% | |
| ATTGCATTATAGTGAGGAGT+GGG | + | chr1_1:3150708-3150727 | Msa0001440:intron | 35.0% | |
| !! | TGAATCTTTGGGATTGTTGT+AGG | - | chr1_1:3150847-3150866 | None:intergenic | 35.0% |
| AACAATCCCAAAGATTCATC+TGG | + | chr1_1:3150849-3150868 | Msa0001440:CDS | 35.0% | |
| CACTAACCAGATGAATCTTT+GGG | - | chr1_1:3150858-3150877 | None:intergenic | 35.0% | |
| CAGTGACAAATTTCATAGCA+TGG | - | chr1_1:3150907-3150926 | None:intergenic | 35.0% | |
| !! | GTTTTCAATCCATTGAGTTG+AGG | + | chr1_1:3150977-3150996 | Msa0001440:intron | 35.0% |
| ATTGCGATACTTACGACTTA+CGG | + | chr1_1:3151158-3151177 | Msa0001440:intron | 35.0% | |
| TATCACCACATTTAAGAAGG+CGG | - | chr1_1:3151497-3151516 | None:intergenic | 35.0% | |
| !! | TTCTGAAATTCGAAAGAGGT+AGG | - | chr1_1:3151583-3151602 | None:intergenic | 35.0% |
| AAACCAGTTATGTATTCTGG+TGG | + | chr1_1:3151603-3151622 | Msa0001440:CDS | 35.0% | |
| AACCAGTTATGTATTCTGGT+GGG | + | chr1_1:3151604-3151623 | Msa0001440:CDS | 35.0% | |
| CAAATGGGTAGTCAAGTAAA+GGG | - | chr1_1:3151979-3151998 | None:intergenic | 35.0% | |
| ACAAATGGGTAGTCAAGTAA+AGG | - | chr1_1:3151980-3151999 | None:intergenic | 35.0% | |
| TTTCTCTTTCTGCTTCTGCT+GGG | + | chr1_1:3149192-3149211 | Msa0001440:five_prime_UTR | 40.0% | |
| ! | TCTCTCTCTCTCTCTAAGAA+AGG | + | chr1_1:3149234-3149253 | Msa0001440:five_prime_UTR | 40.0% |
| GATAGAACGGTTCCTTTGAT+TGG | - | chr1_1:3149369-3149388 | None:intergenic | 40.0% | |
| AATAGGCGGAAATCATCATC+TGG | + | chr1_1:3149392-3149411 | Msa0001440:CDS | 40.0% | |
| CCAGATCCGTTCCATTATTT+AGG | - | chr1_1:3149725-3149744 | None:intergenic | 40.0% | |
| ! | CCTAAATAATGGAACGGATC+TGG | + | chr1_1:3149722-3149741 | Msa0001440:intron | 40.0% |
| GAGTTAATATGTGCCTTGGT+TGG | - | chr1_1:3149828-3149847 | None:intergenic | 40.0% | |
| TCGTGAGTTAATATGTGCCT+TGG | - | chr1_1:3149832-3149851 | None:intergenic | 40.0% | |
| GAAGGCTAAAGCCAACATAT+TGG | - | chr1_1:3149888-3149907 | None:intergenic | 40.0% | |
| ATTTATCTCCCATGAGACCA+TGG | - | chr1_1:3149917-3149936 | None:intergenic | 40.0% | |
| GCATAATTCACAGTGAGCAA+TGG | + | chr1_1:3150101-3150120 | Msa0001440:intron | 40.0% | |
| CTTGATCGATCAAACAGTGT+TGG | + | chr1_1:3150220-3150239 | Msa0001440:CDS | 40.0% | |
| GTTCTCACAAACAAAAGGCA+GGG | - | chr1_1:3150419-3150438 | None:intergenic | 40.0% | |
| AGTTCTCACAAACAAAAGGC+AGG | - | chr1_1:3150420-3150439 | None:intergenic | 40.0% | |
| TTGCATTATAGTGAGGAGTG+GGG | + | chr1_1:3150709-3150728 | Msa0001440:intron | 40.0% | |
| TTAACATTACCTGTTGCCCA+TGG | + | chr1_1:3150786-3150805 | Msa0001440:intron | 40.0% | |
| CCACTAACCAGATGAATCTT+TGG | - | chr1_1:3150859-3150878 | None:intergenic | 40.0% | |
| CCAAAGATTCATCTGGTTAG+TGG | + | chr1_1:3150856-3150875 | Msa0001440:intron | 40.0% | |
| AAGGTCAATTACTGCAACAG+TGG | - | chr1_1:3151036-3151055 | None:intergenic | 40.0% | |
| TTGCGATACTTACGACTTAC+GGG | + | chr1_1:3151159-3151178 | Msa0001440:intron | 40.0% | |
| TTGATGTAGTTCAAGCTGAG+AGG | + | chr1_1:3151323-3151342 | Msa0001440:intron | 40.0% | |
| AATAGCCGCCTTCTTAAATG+TGG | + | chr1_1:3151489-3151508 | Msa0001440:intron | 40.0% | |
| ATTTAAAAGGCAGAAGGGAG+GGG | - | chr1_1:3151733-3151752 | None:intergenic | 40.0% | |
| GATTTAAAAGGCAGAAGGGA+GGG | - | chr1_1:3151734-3151753 | None:intergenic | 40.0% | |
| AGATTTAAAAGGCAGAAGGG+AGG | - | chr1_1:3151735-3151754 | None:intergenic | 40.0% | |
| TCATGTGCTGAAACTAGGAT+TGG | - | chr1_1:3151873-3151892 | None:intergenic | 40.0% | |
| ATCCTAGTTTCAGCACATGA+TGG | + | chr1_1:3151873-3151892 | Msa0001440:CDS | 40.0% | |
| ATCCATCATGTGCTGAAACT+AGG | - | chr1_1:3151878-3151897 | None:intergenic | 40.0% | |
| ! | TAGTTTCAGCACATGATGGA+TGG | + | chr1_1:3151877-3151896 | Msa0001440:exon | 40.0% |
| ATTGCAATTCACACCTACAC+AGG | - | chr1_1:3152069-3152088 | None:intergenic | 40.0% | |
| CTTTCTCTTTCTGCTTCTGC+TGG | + | chr1_1:3149191-3149210 | Msa0001440:five_prime_UTR | 45.0% | |
| AAGAAGAGACTGAGAGTCAG+AGG | + | chr1_1:3149257-3149276 | Msa0001440:five_prime_UTR | 45.0% | |
| AGAAGAGACTGAGAGTCAGA+GGG | + | chr1_1:3149258-3149277 | Msa0001440:five_prime_UTR | 45.0% | |
| !! | AATAAAGCATCGGACAGGAC+AGG | - | chr1_1:3149539-3149558 | None:intergenic | 45.0% |
| ! | CTTTAGCCTTCTATCTGCCA+TGG | + | chr1_1:3149897-3149916 | Msa0001440:intron | 45.0% |
| ATGAGACCATGGCAGATAGA+AGG | - | chr1_1:3149906-3149925 | None:intergenic | 45.0% | |
| TTCTATCTGCCATGGTCTCA+TGG | + | chr1_1:3149905-3149924 | Msa0001440:intron | 45.0% | |
| TCTATCTGCCATGGTCTCAT+GGG | + | chr1_1:3149906-3149925 | Msa0001440:intron | 45.0% | |
| CTTGTAGCTCTTGATGCAAG+TGG | + | chr1_1:3150021-3150040 | Msa0001440:intron | 45.0% | |
| ! | GTGAGCAATGGCAAAGCTTT+TGG | + | chr1_1:3150113-3150132 | Msa0001440:intron | 45.0% |
| AGCAGGAACTGACAGCAAAT+GGG | - | chr1_1:3150139-3150158 | None:intergenic | 45.0% | |
| CTCACGATCACTAAGAAGCT+GGG | - | chr1_1:3150392-3150411 | None:intergenic | 45.0% | |
| ACTCACGATCACTAAGAAGC+TGG | - | chr1_1:3150393-3150412 | None:intergenic | 45.0% | |
| TGCATTATAGTGAGGAGTGG+GGG | + | chr1_1:3150710-3150729 | Msa0001440:intron | 45.0% | |
| ACCTGGAAACAGAAGTCCAT+GGG | - | chr1_1:3150805-3150824 | None:intergenic | 45.0% | |
| AACCTGGAAACAGAAGTCCA+TGG | - | chr1_1:3150806-3150825 | None:intergenic | 45.0% | |
| ATGGACTTCTGTTTCCAGGT+TGG | + | chr1_1:3150805-3150824 | Msa0001440:intron | 45.0% | |
| TGTATTACAGCTGTCCAACC+TGG | - | chr1_1:3150822-3150841 | None:intergenic | 45.0% | |
| TACTGGTGACCTCAACTCAA+TGG | - | chr1_1:3150989-3151008 | None:intergenic | 45.0% | |
| ACTTACGACTTACGGGAGTT+TGG | + | chr1_1:3151166-3151185 | Msa0001440:intron | 45.0% | |
| GTCCCACCAGAATACATAAC+TGG | - | chr1_1:3151609-3151628 | None:intergenic | 45.0% | |
| TCTGAACTGAGTCCAAACTG+AGG | - | chr1_1:3151631-3151650 | None:intergenic | 45.0% | |
| TGTGTCACAGCTTGACTTTC+TGG | + | chr1_1:3151820-3151839 | Msa0001440:CDS | 45.0% | |
| GTGTCACAGCTTGACTTTCT+GGG | + | chr1_1:3151821-3151840 | Msa0001440:CDS | 45.0% | |
| ! | TAGGATTGGCACTGTGCATT+TGG | - | chr1_1:3151859-3151878 | None:intergenic | 45.0% |
| AATATGTGTGACGCCTGTGT+AGG | + | chr1_1:3152053-3152072 | Msa0001440:three_prime_UTR | 45.0% | |
| !! | CAAAAAAAAAAAAAAAAAAA+AGG | - | chr1_1:3150057-3150076 | None:intergenic | 5.0% |
| GAACGGTTCCTTTGATTGGG+CGG | - | chr1_1:3149365-3149384 | None:intergenic | 50.0% | |
| GGCGGAAATCATCATCTGGT+TGG | + | chr1_1:3149396-3149415 | Msa0001440:intron | 50.0% | |
| ! | TAATGGAACGGATCTGGGAC+TGG | + | chr1_1:3149728-3149747 | Msa0001440:intron | 50.0% |
| ! | AATGGAACGGATCTGGGACT+GGG | + | chr1_1:3149729-3149748 | Msa0001440:intron | 50.0% |
| GATCAGTGGATGTCCAACCA+AGG | + | chr1_1:3149812-3149831 | Msa0001440:intron | 50.0% | |
| GAGCAGGAACTGACAGCAAA+TGG | - | chr1_1:3150140-3150159 | None:intergenic | 50.0% | |
| AACAGAAGTCCATGGGCAAC+AGG | - | chr1_1:3150798-3150817 | None:intergenic | 50.0% | |
| ATTCTGGTGGGACCTCAGTT+TGG | + | chr1_1:3151616-3151635 | Msa0001440:CDS | 50.0% | |
| TCAGTTCAGACTCCCTCATC+AGG | + | chr1_1:3151641-3151660 | Msa0001440:CDS | 50.0% | |
| CAGCTGGTGACATAATCTGG+GGG | - | chr1_1:3151784-3151803 | None:intergenic | 50.0% | |
| GCAGCTGGTGACATAATCTG+GGG | - | chr1_1:3151785-3151804 | None:intergenic | 50.0% | |
| CGCAGCTGGTGACATAATCT+GGG | - | chr1_1:3151786-3151805 | None:intergenic | 50.0% | |
| TCGCAGCTGGTGACATAATC+TGG | - | chr1_1:3151787-3151806 | None:intergenic | 50.0% | |
| GTCAAGCTGTGACACAGAAG+AGG | - | chr1_1:3151816-3151835 | None:intergenic | 50.0% | |
| !! | TCAGCACATGATGGATGGCA+TGG | + | chr1_1:3151882-3151901 | Msa0001440:exon | 50.0% |
| GAGCTTGAGCTTGAGCGTGA+GGG | - | chr1_1:3149298-3149317 | None:intergenic | 55.0% | |
| TGAGCTTGAGCTTGAGCGTG+AGG | - | chr1_1:3149299-3149318 | None:intergenic | 55.0% | |
| TCAAGCTCAAGCTCAGCCAC+CGG | + | chr1_1:3149304-3149323 | Msa0001440:CDS | 55.0% | |
| ACCACCACAGGACCAGATTC+CGG | - | chr1_1:3149326-3149345 | None:intergenic | 55.0% | |
| GCTATGCTCCGCCCAATCAA+AGG | + | chr1_1:3149354-3149373 | Msa0001440:CDS | 55.0% | |
| GCCCATGGACTTCTGTTTCC+AGG | + | chr1_1:3150801-3150820 | Msa0001440:intron | 55.0% | |
| AAAAGGCAGAAGGGAGGGGA+AGG | - | chr1_1:3151729-3151748 | None:intergenic | 55.0% | |
| CAAGCTCAGCCACCGGAATC+TGG | + | chr1_1:3149311-3149330 | Msa0001440:CDS | 60.0% | |
| ACCACAGGACCAGATTCCGG+TGG | - | chr1_1:3149323-3149342 | None:intergenic | 60.0% | |
| ACCGGAATCTGGTCCTGTGG+TGG | + | chr1_1:3149322-3149341 | Msa0001440:CDS | 60.0% | |
| GGAATCTGGTCCTGTGGTGG+TGG | + | chr1_1:3149325-3149344 | Msa0001440:CDS | 60.0% | |
| TAGCGCTTCACCACCACCAC+AGG | - | chr1_1:3149338-3149357 | None:intergenic | 60.0% | |
| !! | GAAGAGGAAGCACTCGCAGC+TGG | - | chr1_1:3151800-3151819 | None:intergenic | 60.0% |
| GCCACCGGAATCTGGTCCTG+TGG | + | chr1_1:3149319-3149338 | Msa0001440:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3149172 | 3152252 | 3149172 | ID=Msa0001440;Name=Msa0001440 |
| chr1_1 | mRNA | 3149172 | 3152252 | 3149172 | ID=Msa0001440-mRNA-1;Parent=Msa0001440;Name=Msa0001440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=109|1|1|1|1|1|5|360|179 |
| chr1_1 | exon | 3149172 | 3149413 | 3149172 | ID=Msa0001440-mRNA-1:exon:721;Parent=Msa0001440-mRNA-1 |
| chr1_1 | exon | 3150215 | 3150406 | 3150215 | ID=Msa0001440-mRNA-1:exon:722;Parent=Msa0001440-mRNA-1 |
| chr1_1 | exon | 3150823 | 3150870 | 3150823 | ID=Msa0001440-mRNA-1:exon:723;Parent=Msa0001440-mRNA-1 |
| chr1_1 | exon | 3151601 | 3151662 | 3151601 | ID=Msa0001440-mRNA-1:exon:724;Parent=Msa0001440-mRNA-1 |
| chr1_1 | exon | 3151788 | 3152252 | 3151788 | ID=Msa0001440-mRNA-1:exon:725;Parent=Msa0001440-mRNA-1 |
| chr1_1 | five_prime_UTR | 3149172 | 3149280 | 3149172 | ID=Msa0001440-mRNA-1:five_prime_utr;Parent=Msa0001440-mRNA-1 |
| chr1_1 | CDS | 3149281 | 3149413 | 3149281 | ID=Msa0001440-mRNA-1:cds;Parent=Msa0001440-mRNA-1 |
| chr1_1 | CDS | 3150215 | 3150406 | 3150215 | ID=Msa0001440-mRNA-1:cds;Parent=Msa0001440-mRNA-1 |
| chr1_1 | CDS | 3150823 | 3150870 | 3150823 | ID=Msa0001440-mRNA-1:cds;Parent=Msa0001440-mRNA-1 |
| chr1_1 | CDS | 3151601 | 3151662 | 3151601 | ID=Msa0001440-mRNA-1:cds;Parent=Msa0001440-mRNA-1 |
| chr1_1 | CDS | 3151788 | 3151892 | 3151788 | ID=Msa0001440-mRNA-1:cds;Parent=Msa0001440-mRNA-1 |
| chr1_1 | three_prime_UTR | 3151893 | 3152252 | 3151893 | ID=Msa0001440-mRNA-1:three_prime_utr;Parent=Msa0001440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
