AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1409060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409060 MtrunA17_Chr4g0070011 99.563 229 1 0 1 229 577 805 1.62e-164 474
Msa1409060 MtrunA17_Chr2g0301621 90.393 229 22 0 1 229 575 803 4.77e-150 437
Msa1409060 MtrunA17_Chr7g0269581 74.123 228 58 1 1 227 577 804 1.59e-117 353
Msa1409060 MtrunA17_Chr1g0195241 74.336 226 55 2 1 224 562 786 3.07e-114 344
Msa1409060 MtrunA17_Chr6g0481171 60.606 231 88 2 1 229 455 684 6.08e-98 301
Msa1409060 MtrunA17_Chr6g0481131 60.606 231 88 2 1 229 583 812 8.43e-97 301
Msa1409060 MtrunA17_Chr5g0433761 60.606 231 88 2 1 229 581 810 1.23e-95 297
Msa1409060 MtrunA17_Chr3g0109841 60.606 231 88 2 1 229 584 813 1.24e-95 297
Msa1409060 MtrunA17_Chr6g0481241 51.807 166 58 1 55 220 1 144 1.15e-59 187
Msa1409060 MtrunA17_Chr6g0481261 72.000 100 28 0 58 157 4 103 2.81e-50 159
Msa1409060 MtrunA17_Chr5g0443091 32.461 191 114 5 1 186 493 673 7.54e-24 99.4
Msa1409060 MtrunA17_Chr4g0064501 35.294 187 114 4 1 186 482 662 1.83e-23 98.6
Msa1409060 MtrunA17_Chr3g0096241 30.890 191 117 5 1 186 486 666 5.03e-22 94.4
Msa1409060 MtrunA17_Chr6g0481151 63.793 58 18 2 1 56 39 95 3.62e-15 69.3
Msa1409060 MtrunA17_Chr6g0481161 63.636 44 16 0 107 150 1 44 2.84e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409060 AT3G43190.2 86.026 229 32 0 1 229 579 807 1.65e-142 418
Msa1409060 AT3G43190.1 86.026 229 32 0 1 229 579 807 1.65e-142 418
Msa1409060 AT5G20830.3 86.344 227 31 0 1 227 579 805 2.47e-142 417
Msa1409060 AT5G20830.2 86.344 227 31 0 1 227 579 805 2.47e-142 417
Msa1409060 AT5G20830.1 86.344 227 31 0 1 227 579 805 2.47e-142 417
Msa1409060 AT4G02280.1 68.584 226 70 1 1 225 579 804 9.00e-111 336
Msa1409060 AT5G49190.3 68.261 230 72 1 1 229 510 739 1.03e-110 334
Msa1409060 AT5G49190.2 68.261 230 72 1 1 229 566 795 4.01e-110 334
Msa1409060 AT5G49190.1 68.261 230 72 1 1 229 576 805 4.36e-110 334
Msa1409060 AT5G37180.3 58.333 228 92 2 1 226 327 553 5.74e-94 287
Msa1409060 AT5G37180.2 58.333 228 92 2 1 226 385 611 2.61e-93 286
Msa1409060 AT5G37180.1 58.333 228 92 2 1 226 573 799 1.32e-91 286
Msa1409060 AT1G73370.2 60.088 228 88 2 1 226 539 765 6.06e-91 286
Msa1409060 AT1G73370.3 60.088 228 88 2 1 226 583 809 1.15e-90 286
Msa1409060 AT1G73370.1 60.088 228 88 2 1 226 583 809 1.15e-90 286
Msa1409060 AT4G10120.4 34.031 191 111 5 1 186 336 516 2.69e-27 109
Msa1409060 AT4G10120.5 34.031 191 111 5 1 186 309 489 3.08e-27 109
Msa1409060 AT4G10120.2 34.031 191 111 5 1 186 510 690 3.10e-27 109
Msa1409060 AT4G10120.3 34.031 191 111 5 1 186 510 690 3.10e-27 109
Msa1409060 AT4G10120.1 34.031 191 111 5 1 186 510 690 3.10e-27 109
Msa1409060 AT5G11110.1 33.981 206 117 6 1 197 485 680 1.61e-26 107
Msa1409060 AT5G20280.1 34.225 187 116 4 1 186 483 663 4.52e-24 100
Msa1409060 AT1G04920.1 31.937 191 115 5 1 186 491 671 1.31e-22 96.3

Find 81 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCGGCTTTGTTCTCTTATT+TGG 0.099156 tig0023460:-89038 Msa1409060:three_prime_UTR
CCAACATTTGCAACTCTTAA+TGG 0.126727 tig0023460:-89663 Msa1409060:CDS
CTTACACTCACTGGTGTCTA+TGG 0.256754 tig0023460:-89331 Msa1409060:CDS
ATCATTGTCCATGGCAAATC+TGG 0.266336 tig0023460:-89627 Msa1409060:CDS
TGCTCTCAAGTACCGCAAAT+TGG 0.339856 tig0023460:-89245 Msa1409060:intron
TCAACTTGTAGGTCTCAATT+AGG 0.346623 tig0023460:+89820 None:intergenic
TCACTGGTGTCTATGGCTTC+TGG 0.353000 tig0023460:-89324 Msa1409060:CDS
CCTGCTGTGTATGAAGCTTT+CGG 0.365213 tig0023460:-89720 Msa1409060:CDS
GTTGTTGAGGCCATGGCTAC+TGG 0.374269 tig0023460:-89690 Msa1409060:CDS
GAATTGGCCATTCAACTTGT+AGG 0.393057 tig0023460:+89809 None:intergenic
TGAAGAGTTAAATGAAGAAA+TGG 0.399925 tig0023460:-89065 Msa1409060:three_prime_UTR
ACGGCTTAAAATTGAATTGA+TGG 0.400520 tig0023460:+88888 None:intergenic
GAGAGGAAATCCATCTGAAT+TGG 0.408372 tig0023460:+89793 None:intergenic
TGCATGATTTGAAATGTGAT+TGG 0.415290 tig0023460:-88921 Msa1409060:three_prime_UTR
GACCGTGTGAAGAACATTAC+AGG 0.424858 tig0023460:-89987 None:intergenic
ATATAAAACTTACCAATTTG+CGG 0.440085 tig0023460:+89233 None:intergenic
AAATGAAGAAATGGAGAAAC+CGG 0.441308 tig0023460:-89056 Msa1409060:three_prime_UTR
AAGGAGAATATGAACAATAA+AGG 0.448115 tig0023460:+88864 None:intergenic
TTGTTGTTGTGGCCGGAGAC+AGG 0.452968 tig0023460:-89914 Msa1409060:CDS
CGGCTTAAAATTGAATTGAT+GGG 0.453390 tig0023460:+88889 None:intergenic
GCATGATTTGAAATGTGATT+GGG 0.463926 tig0023460:-88920 Msa1409060:three_prime_UTR
CCATGGACAATGATCTCAGC+AGG 0.473413 tig0023460:+89618 None:intergenic
CCATTAAGAGTTGCAAATGT+TGG 0.481969 tig0023460:+89645 None:intergenic
GAGGAAGGAGTCAAAGGACT+TGG 0.482826 tig0023460:-89892 Msa1409060:CDS
ATTTGATAAAATAAAGTTGA+AGG 0.492002 tig0023460:+88845 None:intergenic
TTTGCTTCCTAAGGTATACA+TGG 0.492112 tig0023460:-89375 Msa1409060:intron
TGACTCCTTCCTCCTGTCTC+CGG 0.496222 tig0023460:+89884 None:intergenic
TTTGACAGTTGTTGAGGCCA+TGG 0.496590 tig0023460:-89697 Msa1409060:CDS
ATTATACATATGAAGACAAA+AGG 0.498960 tig0023460:+88786 None:intergenic
TCAAAGCTGATCCATCTCAC+TGG 0.511921 tig0023460:-89539 Msa1409060:CDS
CAGAGGCTTCTTACACTCAC+TGG 0.512992 tig0023460:-89340 Msa1409060:CDS
GTGAACCTTGTTGTTGTGGC+CGG 0.518232 tig0023460:-89921 Msa1409060:CDS
AGACAGGAGGAAGGAGTCAA+AGG 0.518466 tig0023460:-89898 Msa1409060:CDS
CAGATGAACCGTGTCAGAAA+CGG 0.519346 tig0023460:-89789 Msa1409060:CDS
GAATGCCAAGCTTCGTGAGT+TGG 0.519426 tig0023460:-89943 Msa1409060:CDS
GCTGAGATGAAGAAGATGTA+TGG 0.520705 tig0023460:-89861 Msa1409060:CDS
AGTTGAATGGCCAATTCAGA+TGG 0.521066 tig0023460:-89821 Msa1409060:CDS
CCTTGTTGAATTCTTTGAGA+AGG 0.524810 tig0023460:-89562 Msa1409060:CDS
CTTACTTCTCTTCAATACGT+TGG 0.533821 tig0023460:+89475 None:intergenic
CAAAGCTGATCCATCTCACT+GGG 0.542532 tig0023460:-89538 Msa1409060:CDS
ACAGCTCTCCGTTTCTGACA+CGG 0.543530 tig0023460:+89763 None:intergenic
ATTGAGACCTACAAGTTGAA+TGG 0.547867 tig0023460:-89834 Msa1409060:CDS
GTTGGTGAACCTTGTTGTTG+TGG 0.551147 tig0023460:-89925 Msa1409060:CDS
TCCAAATAAGAGAACAAAGC+CGG 0.552225 tig0023460:+89037 None:intergenic
GTTCACCAACTCACGAAGCT+TGG 0.555450 tig0023460:+89920 None:intergenic
GAGATCTTGTCCCAGTGAGA+TGG 0.559380 tig0023460:+89510 None:intergenic
GCAGCGCGGTCACCATGGTA+AGG 0.561418 tig0023460:+89573 None:intergenic
ACAGGACTTGTGGAGTGGTA+CGG 0.566605 tig0023460:-89969 Msa1409060:CDS
TTTCGGTTTGACAGTTGTTG+AGG 0.569857 tig0023460:-89703 Msa1409060:CDS
AGGTTGCACGAAAGCTCCCT+TGG 0.571444 tig0023460:+89722 None:intergenic
GGCGGCTCTCAAGACGGTCG+AGG 0.571987 tig0023460:+89287 None:intergenic
GGCTTAAAATTGAATTGATG+GGG 0.572089 tig0023460:+88890 None:intergenic
CACTGGGACAAGATCTCTCA+AGG 0.573580 tig0023460:-89522 Msa1409060:CDS
TGTGGAATCCAGATTTGCCA+TGG 0.594911 tig0023460:+89601 None:intergenic
GAAGAACATTACAGGACTTG+TGG 0.595526 tig0023460:-89979 Msa1409060:CDS
TGTTGGCAATCCAGTAGCCA+TGG 0.598646 tig0023460:+89662 None:intergenic
CCGAAAGCTTCATACACAGC+AGG 0.603050 tig0023460:+89702 None:intergenic
GATAGCGGCGGCTCTCAAGA+CGG 0.608468 tig0023460:+89281 None:intergenic
CATGGACAATTTACTCTCAG+AGG 0.621719 tig0023460:-89357 Msa1409060:CDS
GATCAGCAGCGCGGTCACCA+TGG 0.625732 tig0023460:+89568 None:intergenic
CCTGCTGAGATCATTGTCCA+TGG 0.628891 tig0023460:-89636 Msa1409060:CDS
TGTCTCCGGCCACAACAACA+AGG 0.631413 tig0023460:+89898 None:intergenic
ACATTTGCAACTCTTAATGG+TGG 0.637918 tig0023460:-89660 Msa1409060:CDS
TTGTTGTGGCCGGAGACAGG+AGG 0.640249 tig0023460:-89911 Msa1409060:CDS
TTCCACATTGATCCTTACCA+TGG 0.642013 tig0023460:-89603 Msa1409060:CDS
GAATATGAACAATAAAGGCA+CGG 0.646435 tig0023460:+88869 None:intergenic
CCTTGGTGTCACAAATCACA+CGG 0.650373 tig0023460:+89739 None:intergenic
TGTGGCCGGAGACAGGAGGA+AGG 0.651356 tig0023460:-89907 Msa1409060:CDS
CCTTCTCAAAGAATTCAACA+AGG 0.652768 tig0023460:+89544 None:intergenic
GTCCTGTAATGTTCTTCACA+CGG 0.661755 tig0023460:+89967 None:intergenic
CATAGAACATCTCAAGATAG+CGG 0.664966 tig0023460:+89266 None:intergenic
ACATTACAGGACTTGTGGAG+TGG 0.665817 tig0023460:-89974 Msa1409060:CDS
CGTGTGATTTGTGACACCAA+GGG 0.673034 tig0023460:-89756 Msa1409060:CDS
TCTGACACGGTTCATCTGAG+AGG 0.674295 tig0023460:+89776 None:intergenic
TAGCTGTTGAGTAAAATCTG+AGG 0.691053 tig0023460:-89091 Msa1409060:exon
AGAACATCTCAAGATAGCGG+CGG 0.694175 tig0023460:+89269 None:intergenic
CATGGACAATGATCTCAGCA+GGG 0.699547 tig0023460:+89619 None:intergenic
CACCATGGTAAGGATCAATG+TGG 0.700341 tig0023460:+89583 None:intergenic
TGGGACAAGATCTCTCAAGG+TGG 0.743237 tig0023460:-89519 Msa1409060:CDS
CCGTGTGATTTGTGACACCA+AGG 0.745422 tig0023460:-89757 Msa1409060:CDS
CAACAAGGAGATCAGCAGCG+CGG 0.775355 tig0023460:+89559 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAACTTGTTTTATTTTT+TGG - tig0023460:89295-89314 Msa1409060:CDS 15.0%
!! ATTTGATAAAATAAAGTTGA+AGG + tig0023460:89851-89870 None:intergenic 15.0%
!!! GATTAACTTGTTTTATTTTT+TGG - tig0023460:89295-89314 Msa1409060:CDS 15.0%
!! ATTTGATAAAATAAAGTTGA+AGG + tig0023460:89851-89870 None:intergenic 15.0%
!! ATATAAAACTTACCAATTTG+CGG + tig0023460:89463-89482 None:intergenic 20.0%
!!! GATTTTGTTAATTTAAGCTT+TGG - tig0023460:89720-89739 Msa1409060:CDS 20.0%
!! GAAAAAAACATAAAGAGAAA+AGG + tig0023460:89879-89898 None:intergenic 20.0%
!! ATTATACATATGAAGACAAA+AGG + tig0023460:89910-89929 None:intergenic 20.0%
!! ATATAAAACTTACCAATTTG+CGG + tig0023460:89463-89482 None:intergenic 20.0%
!!! GATTTTGTTAATTTAAGCTT+TGG - tig0023460:89720-89739 Msa1409060:CDS 20.0%
!! GAAAAAAACATAAAGAGAAA+AGG + tig0023460:89879-89898 None:intergenic 20.0%
!! ATTATACATATGAAGACAAA+AGG + tig0023460:89910-89929 None:intergenic 20.0%
!!! TTCCATAGTTTTCTTTGTTT+AGG - tig0023460:89259-89278 Msa1409060:CDS 25.0%
! AACCTAAACAAAGAAAACTA+TGG + tig0023460:89264-89283 None:intergenic 25.0%
! TCTATCAAGTTACTAATCAA+TGG - tig0023460:89537-89556 Msa1409060:CDS 25.0%
! TGAAGAGTTAAATGAAGAAA+TGG - tig0023460:89628-89647 Msa1409060:CDS 25.0%
! AAGGAGAATATGAACAATAA+AGG + tig0023460:89832-89851 None:intergenic 25.0%
! AAAAACATAAAGAGAAAAGG+TGG + tig0023460:89876-89895 None:intergenic 25.0%
!!! TTCCATAGTTTTCTTTGTTT+AGG - tig0023460:89259-89278 Msa1409060:CDS 25.0%
! AACCTAAACAAAGAAAACTA+TGG + tig0023460:89264-89283 None:intergenic 25.0%
! TCTATCAAGTTACTAATCAA+TGG - tig0023460:89537-89556 Msa1409060:CDS 25.0%
! TGAAGAGTTAAATGAAGAAA+TGG - tig0023460:89628-89647 Msa1409060:CDS 25.0%
! AAGGAGAATATGAACAATAA+AGG + tig0023460:89832-89851 None:intergenic 25.0%
! AAAAACATAAAGAGAAAAGG+TGG + tig0023460:89876-89895 None:intergenic 25.0%
ACAAAGAAAACTATGGAACA+TGG + tig0023460:89257-89276 None:intergenic 30.0%
!!! ATTTTTTGGTTTGCTTCCTA+AGG - tig0023460:89309-89328 Msa1409060:CDS 30.0%
AAATTGTCCATGTATACCTT+AGG + tig0023460:89328-89347 None:intergenic 30.0%
AAATGAAGAAATGGAGAAAC+CGG - tig0023460:89637-89656 Msa1409060:CDS 30.0%
! TGCATGATTTGAAATGTGAT+TGG - tig0023460:89772-89791 Msa1409060:CDS 30.0%
! GCATGATTTGAAATGTGATT+GGG - tig0023460:89773-89792 Msa1409060:CDS 30.0%
GGCTTAAAATTGAATTGATG+GGG + tig0023460:89806-89825 None:intergenic 30.0%
CGGCTTAAAATTGAATTGAT+GGG + tig0023460:89807-89826 None:intergenic 30.0%
ACGGCTTAAAATTGAATTGA+TGG + tig0023460:89808-89827 None:intergenic 30.0%
GAATATGAACAATAAAGGCA+CGG + tig0023460:89827-89846 None:intergenic 30.0%
ACAAAGAAAACTATGGAACA+TGG + tig0023460:89257-89276 None:intergenic 30.0%
!!! ATTTTTTGGTTTGCTTCCTA+AGG - tig0023460:89309-89328 Msa1409060:CDS 30.0%
AAATTGTCCATGTATACCTT+AGG + tig0023460:89328-89347 None:intergenic 30.0%
AAATGAAGAAATGGAGAAAC+CGG - tig0023460:89637-89656 Msa1409060:CDS 30.0%
! TGCATGATTTGAAATGTGAT+TGG - tig0023460:89772-89791 Msa1409060:CDS 30.0%
! GCATGATTTGAAATGTGATT+GGG - tig0023460:89773-89792 Msa1409060:CDS 30.0%
GGCTTAAAATTGAATTGATG+GGG + tig0023460:89806-89825 None:intergenic 30.0%
CGGCTTAAAATTGAATTGAT+GGG + tig0023460:89807-89826 None:intergenic 30.0%
ACGGCTTAAAATTGAATTGA+TGG + tig0023460:89808-89827 None:intergenic 30.0%
GAATATGAACAATAAAGGCA+CGG + tig0023460:89827-89846 None:intergenic 30.0%
TCAACTTGTAGGTCTCAATT+AGG + tig0023460:88876-88895 None:intergenic 35.0%
! ATTGAGACCTACAAGTTGAA+TGG - tig0023460:88877-88896 Msa1409060:three_prime_UTR 35.0%
CCATTAAGAGTTGCAAATGT+TGG + tig0023460:89051-89070 None:intergenic 35.0%
CCAACATTTGCAACTCTTAA+TGG - tig0023460:89048-89067 Msa1409060:three_prime_UTR 35.0%
ACATTTGCAACTCTTAATGG+TGG - tig0023460:89051-89070 Msa1409060:three_prime_UTR 35.0%
CCTTCTCAAAGAATTCAACA+AGG + tig0023460:89152-89171 None:intergenic 35.0%
! CCTTGTTGAATTCTTTGAGA+AGG - tig0023460:89149-89168 Msa1409060:intron 35.0%
CTTACTTCTCTTCAATACGT+TGG + tig0023460:89221-89240 None:intergenic 35.0%
TTTGCTTCCTAAGGTATACA+TGG - tig0023460:89318-89337 Msa1409060:CDS 35.0%
CATAGAACATCTCAAGATAG+CGG + tig0023460:89430-89449 None:intergenic 35.0%
! GTTACATTTTTGTGTACCTC+AGG - tig0023460:89564-89583 Msa1409060:CDS 35.0%
! AGATTTTACTCAACAGCTAG+GGG + tig0023460:89601-89620 None:intergenic 35.0%
! CAGATTTTACTCAACAGCTA+GGG + tig0023460:89602-89621 None:intergenic 35.0%
! TCAGATTTTACTCAACAGCT+AGG + tig0023460:89603-89622 None:intergenic 35.0%
TAGCTGTTGAGTAAAATCTG+AGG - tig0023460:89602-89621 Msa1409060:CDS 35.0%
TCCAAATAAGAGAACAAAGC+CGG + tig0023460:89659-89678 None:intergenic 35.0%
TCAACTTGTAGGTCTCAATT+AGG + tig0023460:88876-88895 None:intergenic 35.0%
! ATTGAGACCTACAAGTTGAA+TGG - tig0023460:88877-88896 Msa1409060:three_prime_UTR 35.0%
CCATTAAGAGTTGCAAATGT+TGG + tig0023460:89051-89070 None:intergenic 35.0%
CCAACATTTGCAACTCTTAA+TGG - tig0023460:89048-89067 Msa1409060:three_prime_UTR 35.0%
ACATTTGCAACTCTTAATGG+TGG - tig0023460:89051-89070 Msa1409060:three_prime_UTR 35.0%
CCTTCTCAAAGAATTCAACA+AGG + tig0023460:89152-89171 None:intergenic 35.0%
! CCTTGTTGAATTCTTTGAGA+AGG - tig0023460:89149-89168 Msa1409060:intron 35.0%
CTTACTTCTCTTCAATACGT+TGG + tig0023460:89221-89240 None:intergenic 35.0%
TTTGCTTCCTAAGGTATACA+TGG - tig0023460:89318-89337 Msa1409060:CDS 35.0%
CATAGAACATCTCAAGATAG+CGG + tig0023460:89430-89449 None:intergenic 35.0%
! GTTACATTTTTGTGTACCTC+AGG - tig0023460:89564-89583 Msa1409060:CDS 35.0%
! AGATTTTACTCAACAGCTAG+GGG + tig0023460:89601-89620 None:intergenic 35.0%
! CAGATTTTACTCAACAGCTA+GGG + tig0023460:89602-89621 None:intergenic 35.0%
! TCAGATTTTACTCAACAGCT+AGG + tig0023460:89603-89622 None:intergenic 35.0%
TAGCTGTTGAGTAAAATCTG+AGG - tig0023460:89602-89621 Msa1409060:CDS 35.0%
TCCAAATAAGAGAACAAAGC+CGG + tig0023460:89659-89678 None:intergenic 35.0%
GTCCTGTAATGTTCTTCACA+CGG + tig0023460:88729-88748 None:intergenic 40.0%
GAAGAACATTACAGGACTTG+TGG - tig0023460:88732-88751 Msa1409060:three_prime_UTR 40.0%
GCTGAGATGAAGAAGATGTA+TGG - tig0023460:88850-88869 Msa1409060:three_prime_UTR 40.0%
GAATTGGCCATTCAACTTGT+AGG + tig0023460:88887-88906 None:intergenic 40.0%
AGTTGAATGGCCAATTCAGA+TGG - tig0023460:88890-88909 Msa1409060:three_prime_UTR 40.0%
GAGAGGAAATCCATCTGAAT+TGG + tig0023460:88903-88922 None:intergenic 40.0%
! TTTCGGTTTGACAGTTGTTG+AGG - tig0023460:89008-89027 Msa1409060:three_prime_UTR 40.0%
ATCATTGTCCATGGCAAATC+TGG - tig0023460:89084-89103 Msa1409060:exon 40.0%
TTCCACATTGATCCTTACCA+TGG - tig0023460:89108-89127 Msa1409060:CDS 40.0%
CATGGACAATTTACTCTCAG+AGG - tig0023460:89336-89355 Msa1409060:CDS 40.0%
!! ACCGGCTTTGTTCTCTTATT+TGG - tig0023460:89655-89674 Msa1409060:CDS 40.0%
GTCCTGTAATGTTCTTCACA+CGG + tig0023460:88729-88748 None:intergenic 40.0%
GAAGAACATTACAGGACTTG+TGG - tig0023460:88732-88751 Msa1409060:three_prime_UTR 40.0%
GCTGAGATGAAGAAGATGTA+TGG - tig0023460:88850-88869 Msa1409060:three_prime_UTR 40.0%
GAATTGGCCATTCAACTTGT+AGG + tig0023460:88887-88906 None:intergenic 40.0%
AGTTGAATGGCCAATTCAGA+TGG - tig0023460:88890-88909 Msa1409060:three_prime_UTR 40.0%
GAGAGGAAATCCATCTGAAT+TGG + tig0023460:88903-88922 None:intergenic 40.0%
! TTTCGGTTTGACAGTTGTTG+AGG - tig0023460:89008-89027 Msa1409060:three_prime_UTR 40.0%
ATCATTGTCCATGGCAAATC+TGG - tig0023460:89084-89103 Msa1409060:exon 40.0%
TTCCACATTGATCCTTACCA+TGG - tig0023460:89108-89127 Msa1409060:CDS 40.0%
CATGGACAATTTACTCTCAG+AGG - tig0023460:89336-89355 Msa1409060:CDS 40.0%
!! ACCGGCTTTGTTCTCTTATT+TGG - tig0023460:89655-89674 Msa1409060:CDS 40.0%
GACCGTGTGAAGAACATTAC+AGG - tig0023460:88724-88743 Msa1409060:three_prime_UTR 45.0%
ACATTACAGGACTTGTGGAG+TGG - tig0023460:88737-88756 Msa1409060:three_prime_UTR 45.0%
!! GTTGGTGAACCTTGTTGTTG+TGG - tig0023460:88786-88805 Msa1409060:three_prime_UTR 45.0%
CAGATGAACCGTGTCAGAAA+CGG - tig0023460:88922-88941 Msa1409060:three_prime_UTR 45.0%
!! CCTTGGTGTCACAAATCACA+CGG + tig0023460:88957-88976 None:intergenic 45.0%
! CGTGTGATTTGTGACACCAA+GGG - tig0023460:88955-88974 Msa1409060:three_prime_UTR 45.0%
CCTGCTGTGTATGAAGCTTT+CGG - tig0023460:88991-89010 Msa1409060:three_prime_UTR 45.0%
TTTGACAGTTGTTGAGGCCA+TGG - tig0023460:89014-89033 Msa1409060:three_prime_UTR 45.0%
CATGGACAATGATCTCAGCA+GGG + tig0023460:89077-89096 None:intergenic 45.0%
TGTGGAATCCAGATTTGCCA+TGG + tig0023460:89095-89114 None:intergenic 45.0%
CACCATGGTAAGGATCAATG+TGG + tig0023460:89113-89132 None:intergenic 45.0%
TCAAAGCTGATCCATCTCAC+TGG - tig0023460:89172-89191 Msa1409060:intron 45.0%
CAAAGCTGATCCATCTCACT+GGG - tig0023460:89173-89192 Msa1409060:intron 45.0%
CTTACACTCACTGGTGTCTA+TGG - tig0023460:89362-89381 Msa1409060:CDS 45.0%
! AGAACATCTCAAGATAGCGG+CGG + tig0023460:89427-89446 None:intergenic 45.0%
! TGCTCTCAAGTACCGCAAAT+TGG - tig0023460:89448-89467 Msa1409060:intron 45.0%
GACCGTGTGAAGAACATTAC+AGG - tig0023460:88724-88743 Msa1409060:three_prime_UTR 45.0%
ACATTACAGGACTTGTGGAG+TGG - tig0023460:88737-88756 Msa1409060:three_prime_UTR 45.0%
!! GTTGGTGAACCTTGTTGTTG+TGG - tig0023460:88786-88805 Msa1409060:three_prime_UTR 45.0%
CAGATGAACCGTGTCAGAAA+CGG - tig0023460:88922-88941 Msa1409060:three_prime_UTR 45.0%
!! CCTTGGTGTCACAAATCACA+CGG + tig0023460:88957-88976 None:intergenic 45.0%
! CGTGTGATTTGTGACACCAA+GGG - tig0023460:88955-88974 Msa1409060:three_prime_UTR 45.0%
CCTGCTGTGTATGAAGCTTT+CGG - tig0023460:88991-89010 Msa1409060:three_prime_UTR 45.0%
TTTGACAGTTGTTGAGGCCA+TGG - tig0023460:89014-89033 Msa1409060:three_prime_UTR 45.0%
CATGGACAATGATCTCAGCA+GGG + tig0023460:89077-89096 None:intergenic 45.0%
TGTGGAATCCAGATTTGCCA+TGG + tig0023460:89095-89114 None:intergenic 45.0%
CACCATGGTAAGGATCAATG+TGG + tig0023460:89113-89132 None:intergenic 45.0%
TCAAAGCTGATCCATCTCAC+TGG - tig0023460:89172-89191 Msa1409060:intron 45.0%
CAAAGCTGATCCATCTCACT+GGG - tig0023460:89173-89192 Msa1409060:intron 45.0%
CTTACACTCACTGGTGTCTA+TGG - tig0023460:89362-89381 Msa1409060:CDS 45.0%
! AGAACATCTCAAGATAGCGG+CGG + tig0023460:89427-89446 None:intergenic 45.0%
! TGCTCTCAAGTACCGCAAAT+TGG - tig0023460:89448-89467 Msa1409060:intron 45.0%
!!! AAAAATATTTATATTAGTTT+TGG + tig0023460:89518-89537 None:intergenic 5.0%
!!! AAAAATATTTATATTAGTTT+TGG + tig0023460:89518-89537 None:intergenic 5.0%
ACAGGACTTGTGGAGTGGTA+CGG - tig0023460:88742-88761 Msa1409060:three_prime_UTR 50.0%
GAATGCCAAGCTTCGTGAGT+TGG - tig0023460:88768-88787 Msa1409060:three_prime_UTR 50.0%
GTTCACCAACTCACGAAGCT+TGG + tig0023460:88776-88795 None:intergenic 50.0%
!! GTGAACCTTGTTGTTGTGGC+CGG - tig0023460:88790-88809 Msa1409060:three_prime_UTR 50.0%
AGACAGGAGGAAGGAGTCAA+AGG - tig0023460:88813-88832 Msa1409060:three_prime_UTR 50.0%
GAGGAAGGAGTCAAAGGACT+TGG - tig0023460:88819-88838 Msa1409060:three_prime_UTR 50.0%
TCTGACACGGTTCATCTGAG+AGG + tig0023460:88920-88939 None:intergenic 50.0%
ACAGCTCTCCGTTTCTGACA+CGG + tig0023460:88933-88952 None:intergenic 50.0%
! CCGTGTGATTTGTGACACCA+AGG - tig0023460:88954-88973 Msa1409060:three_prime_UTR 50.0%
CCGAAAGCTTCATACACAGC+AGG + tig0023460:88994-89013 None:intergenic 50.0%
TGTTGGCAATCCAGTAGCCA+TGG + tig0023460:89034-89053 None:intergenic 50.0%
CCATGGACAATGATCTCAGC+AGG + tig0023460:89078-89097 None:intergenic 50.0%
CCTGCTGAGATCATTGTCCA+TGG - tig0023460:89075-89094 Msa1409060:three_prime_UTR 50.0%
GAGATCTTGTCCCAGTGAGA+TGG + tig0023460:89186-89205 None:intergenic 50.0%
CACTGGGACAAGATCTCTCA+AGG - tig0023460:89189-89208 Msa1409060:intron 50.0%
TGGGACAAGATCTCTCAAGG+TGG - tig0023460:89192-89211 Msa1409060:intron 50.0%
CAGAGGCTTCTTACACTCAC+TGG - tig0023460:89353-89372 Msa1409060:CDS 50.0%
TCACTGGTGTCTATGGCTTC+TGG - tig0023460:89369-89388 Msa1409060:intron 50.0%
ACAGGACTTGTGGAGTGGTA+CGG - tig0023460:88742-88761 Msa1409060:three_prime_UTR 50.0%
GAATGCCAAGCTTCGTGAGT+TGG - tig0023460:88768-88787 Msa1409060:three_prime_UTR 50.0%
GTTCACCAACTCACGAAGCT+TGG + tig0023460:88776-88795 None:intergenic 50.0%
!! GTGAACCTTGTTGTTGTGGC+CGG - tig0023460:88790-88809 Msa1409060:three_prime_UTR 50.0%
AGACAGGAGGAAGGAGTCAA+AGG - tig0023460:88813-88832 Msa1409060:three_prime_UTR 50.0%
GAGGAAGGAGTCAAAGGACT+TGG - tig0023460:88819-88838 Msa1409060:three_prime_UTR 50.0%
TCTGACACGGTTCATCTGAG+AGG + tig0023460:88920-88939 None:intergenic 50.0%
ACAGCTCTCCGTTTCTGACA+CGG + tig0023460:88933-88952 None:intergenic 50.0%
! CCGTGTGATTTGTGACACCA+AGG - tig0023460:88954-88973 Msa1409060:three_prime_UTR 50.0%
CCGAAAGCTTCATACACAGC+AGG + tig0023460:88994-89013 None:intergenic 50.0%
TGTTGGCAATCCAGTAGCCA+TGG + tig0023460:89034-89053 None:intergenic 50.0%
CCATGGACAATGATCTCAGC+AGG + tig0023460:89078-89097 None:intergenic 50.0%
CCTGCTGAGATCATTGTCCA+TGG - tig0023460:89075-89094 Msa1409060:three_prime_UTR 50.0%
GAGATCTTGTCCCAGTGAGA+TGG + tig0023460:89186-89205 None:intergenic 50.0%
CACTGGGACAAGATCTCTCA+AGG - tig0023460:89189-89208 Msa1409060:intron 50.0%
TGGGACAAGATCTCTCAAGG+TGG - tig0023460:89192-89211 Msa1409060:intron 50.0%
CAGAGGCTTCTTACACTCAC+TGG - tig0023460:89353-89372 Msa1409060:CDS 50.0%
TCACTGGTGTCTATGGCTTC+TGG - tig0023460:89369-89388 Msa1409060:intron 50.0%
TGTCTCCGGCCACAACAACA+AGG + tig0023460:88798-88817 None:intergenic 55.0%
! TTGTTGTTGTGGCCGGAGAC+AGG - tig0023460:88797-88816 Msa1409060:three_prime_UTR 55.0%
TGACTCCTTCCTCCTGTCTC+CGG + tig0023460:88812-88831 None:intergenic 55.0%
AGGTTGCACGAAAGCTCCCT+TGG + tig0023460:88974-88993 None:intergenic 55.0%
GTTGTTGAGGCCATGGCTAC+TGG - tig0023460:89021-89040 Msa1409060:three_prime_UTR 55.0%
CAACAAGGAGATCAGCAGCG+CGG + tig0023460:89137-89156 None:intergenic 55.0%
TGTCTCCGGCCACAACAACA+AGG + tig0023460:88798-88817 None:intergenic 55.0%
! TTGTTGTTGTGGCCGGAGAC+AGG - tig0023460:88797-88816 Msa1409060:three_prime_UTR 55.0%
TGACTCCTTCCTCCTGTCTC+CGG + tig0023460:88812-88831 None:intergenic 55.0%
AGGTTGCACGAAAGCTCCCT+TGG + tig0023460:88974-88993 None:intergenic 55.0%
GTTGTTGAGGCCATGGCTAC+TGG - tig0023460:89021-89040 Msa1409060:three_prime_UTR 55.0%
CAACAAGGAGATCAGCAGCG+CGG + tig0023460:89137-89156 None:intergenic 55.0%
TTGTTGTGGCCGGAGACAGG+AGG - tig0023460:88800-88819 Msa1409060:three_prime_UTR 60.0%
! GATAGCGGCGGCTCTCAAGA+CGG + tig0023460:89415-89434 None:intergenic 60.0%
TTGTTGTGGCCGGAGACAGG+AGG - tig0023460:88800-88819 Msa1409060:three_prime_UTR 60.0%
! GATAGCGGCGGCTCTCAAGA+CGG + tig0023460:89415-89434 None:intergenic 60.0%
TGTGGCCGGAGACAGGAGGA+AGG - tig0023460:88804-88823 Msa1409060:three_prime_UTR 65.0%
GCAGCGCGGTCACCATGGTA+AGG + tig0023460:89123-89142 None:intergenic 65.0%
GATCAGCAGCGCGGTCACCA+TGG + tig0023460:89128-89147 None:intergenic 65.0%
! AGGGGCACAGACTCAGCCTG+AGG + tig0023460:89583-89602 None:intergenic 65.0%
TGTGGCCGGAGACAGGAGGA+AGG - tig0023460:88804-88823 Msa1409060:three_prime_UTR 65.0%
GCAGCGCGGTCACCATGGTA+AGG + tig0023460:89123-89142 None:intergenic 65.0%
GATCAGCAGCGCGGTCACCA+TGG + tig0023460:89128-89147 None:intergenic 65.0%
! AGGGGCACAGACTCAGCCTG+AGG + tig0023460:89583-89602 None:intergenic 65.0%
GGCGGCTCTCAAGACGGTCG+AGG + tig0023460:89409-89428 None:intergenic 70.0%
GGCGGCTCTCAAGACGGTCG+AGG + tig0023460:89409-89428 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0023460 gene 88715 90000 88715 ID=Msa1409060;Name=Msa1409060
tig0023460 mRNA 88715 90000 88715 ID=Msa1409060-mRNA-1;Parent=Msa1409060;Name=Msa1409060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|385|229
tig0023460 exon 88715 89129 88715 ID=Msa1409060-mRNA-1:exon:25848;Parent=Msa1409060-mRNA-1
tig0023460 exon 89246 89384 89246 ID=Msa1409060-mRNA-1:exon:25847;Parent=Msa1409060-mRNA-1
tig0023460 exon 89480 90000 89480 ID=Msa1409060-mRNA-1:exon:25846;Parent=Msa1409060-mRNA-1
tig0023460 CDS 89480 90000 89480 ID=Msa1409060-mRNA-1:cds;Parent=Msa1409060-mRNA-1
tig0023460 CDS 89246 89384 89246 ID=Msa1409060-mRNA-1:cds;Parent=Msa1409060-mRNA-1
tig0023460 CDS 89100 89129 89100 ID=Msa1409060-mRNA-1:cds;Parent=Msa1409060-mRNA-1
tig0023460 three_prime_UTR 88715 89099 88715 ID=Msa1409060-mRNA-1:three_prime_utr;Parent=Msa1409060-mRNA-1
Gene Sequence

>Msa1409060

GCAAGGTTGGACCGTGTGAAGAACATTACAGGACTTGTGGAGTGGTACGGCAAGAATGCCAAGCTTCGTGAGTTGGTGAACCTTGTTGTTGTGGCCGGAGACAGGAGGAAGGAGTCAAAGGACTTGGAAGAGATAGCTGAGATGAAGAAGATGTATGGCCTAATTGAGACCTACAAGTTGAATGGCCAATTCAGATGGATTTCCTCTCAGATGAACCGTGTCAGAAACGGAGAGCTGTACCGTGTGATTTGTGACACCAAGGGAGCTTTCGTGCAACCTGCTGTGTATGAAGCTTTCGGTTTGACAGTTGTTGAGGCCATGGCTACTGGATTGCCAACATTTGCAACTCTTAATGGTGGCCCTGCTGAGATCATTGTCCATGGCAAATCTGGATTCCACATTGATCCTTACCATGGTGACCGCGCTGCTGATCTCCTTGTTGAATTCTTTGAGAAGGTCAAAGCTGATCCATCTCACTGGGACAAGATCTCTCAAGGTGGTCTCCAACGTATTGAAGAGAAGTATACATGGACAATTTACTCTCAGAGGCTTCTTACACTCACTGGTGTCTATGGCTTCTGGAAGCATGTGTCTAACCTCGACCGTCTTGAGAGCCGCCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCCCTAGCTGTTGAGTAA

Protein sequence

>Msa1409060

ARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISQGGLQRIEEKYTWTIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE*