Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367580 | XP_003604062.1 | 96.045 | 177 | 3 | 3 | 1 | 177 | 1 | 173 | 3.86e-115 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367580 | G7J8K4 | 96.045 | 177 | 3 | 3 | 1 | 177 | 1 | 173 | 1.84e-115 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001440 | Msa1367580 | 0.995443 | 2.540167e-216 | -8.615850e-47 |
| Msa1367580 | Msa1371270 | 0.822829 | 1.921119e-53 | -8.615850e-47 |
| Msa1367580 | Msa1409060 | 0.805939 | 1.047692e-49 | -8.615850e-47 |
| Msa0706690 | Msa1367580 | 0.821907 | 3.145987e-53 | -8.615850e-47 |
| Msa1343460 | Msa1367580 | 0.825303 | 5.045917e-54 | -8.615850e-47 |
| Msa0380290 | Msa1367580 | 0.889077 | 3.344059e-73 | -8.615850e-47 |
| Msa1196210 | Msa1367580 | -0.837718 | 4.406473e-57 | -8.615850e-47 |
| Msa0524490 | Msa1367580 | 0.833449 | 5.298141e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367580 | MtrunA17_Chr3g0145751 | 95.105 | 143 | 3 | 3 | 1 | 143 | 1 | 139 | 1.80e-93 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367580 | AT3G07580.1 | 39.865 | 148 | 66 | 9 | 23 | 168 | 10 | 136 | 1.19e-19 | 80.9 |
| Msa1367580 | AT3G07580.2 | 41.935 | 124 | 49 | 9 | 23 | 144 | 10 | 112 | 1.30e-15 | 70.1 |
| Msa1367580 | AT5G48335.1 | 43.443 | 122 | 43 | 5 | 22 | 142 | 18 | 114 | 6.40e-15 | 67.8 |
Find 60 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCACAGCTTGACTTTC+TGG | 0.027355 | tig0018513:+237600 | Msa1367580:CDS |
| TACATTAGGACTTATATTTA+AGG | 0.159684 | tig0018513:+237873 | Msa1367580:three_prime_UTR |
| CTTTCTCTTTCTGCTTCTGC+TGG | 0.246256 | tig0018513:+234987 | Msa1367580:five_prime_UTR |
| CAATGAATCTTCTTGAATAA+TGG | 0.279902 | tig0018513:-236115 | None:intergenic |
| CCACTAACCAGATGAATCTT+TGG | 0.290343 | tig0018513:-236635 | None:intergenic |
| AGAAGATTCATTGCTTTAGA+AGG | 0.326176 | tig0018513:+236125 | Msa1367580:CDS |
| TGAATCTTTGGGATTGTTGT+AGG | 0.326660 | tig0018513:-236623 | None:intergenic |
| GGAACCGTTCTATCAATAAT+AGG | 0.344648 | tig0018513:+235167 | Msa1367580:CDS |
| CAAGCTCAGCCACCGGAATC+TGG | 0.349994 | tig0018513:+235103 | Msa1367580:CDS |
| GATAGAACGGTTCCTTTGAT+TGG | 0.354075 | tig0018513:-235158 | None:intergenic |
| GTGTCACAGCTTGACTTTCT+GGG | 0.362844 | tig0018513:+237601 | Msa1367580:CDS |
| TAGGATTGGCACTGTGCATT+TGG | 0.363887 | tig0018513:-237636 | None:intergenic |
| ATTCTGGTGGGACCTCAGTT+TGG | 0.371991 | tig0018513:+237396 | Msa1367580:CDS |
| GAATTGCAATATCTTACATT+AGG | 0.381475 | tig0018513:+237859 | Msa1367580:three_prime_UTR |
| CGAAGTTACAAAATCACAAA+TGG | 0.387457 | tig0018513:-237772 | None:intergenic |
| CACTAACCAGATGAATCTTT+GGG | 0.397232 | tig0018513:-236634 | None:intergenic |
| ATAGAACGGTTCCTTTGATT+GGG | 0.430840 | tig0018513:-235157 | None:intergenic |
| TTTCTCTTTCTGCTTCTGCT+GGG | 0.448802 | tig0018513:+234988 | Msa1367580:five_prime_UTR |
| AAGAAGAGACTGAGAGTCAG+AGG | 0.454007 | tig0018513:+235055 | Msa1367580:five_prime_UTR |
| GTCCCACCAGAATACATAAC+TGG | 0.456812 | tig0018513:-237386 | None:intergenic |
| GAAAATAAGGACAAAATAGT+TGG | 0.469040 | tig0018513:-238015 | None:intergenic |
| TCAGTTCAGACTCCCTCATC+AGG | 0.470456 | tig0018513:+237421 | Msa1367580:CDS |
| AACAATCCCAAAGATTCATC+TGG | 0.471111 | tig0018513:+236628 | Msa1367580:CDS |
| ACAAATGGGTAGTCAAGTAA+AGG | 0.483918 | tig0018513:-237757 | None:intergenic |
| TAAATAAAGCTTACCTGATG+AGG | 0.484449 | tig0018513:-237434 | None:intergenic |
| GAAGAGGAAGCACTCGCAGC+TGG | 0.484647 | tig0018513:-237577 | None:intergenic |
| CAAATGGGTAGTCAAGTAAA+GGG | 0.492979 | tig0018513:-237756 | None:intergenic |
| ACCACCACAGGACCAGATTC+CGG | 0.497624 | tig0018513:-235115 | None:intergenic |
| AATAGGCGGAAATCATCATC+TGG | 0.506410 | tig0018513:+235184 | Msa1367580:CDS |
| ACTCACGATCACTAAGAAGC+TGG | 0.511171 | tig0018513:-236169 | None:intergenic |
| TCCGCCTATTATTGATAGAA+CGG | 0.520342 | tig0018513:-235171 | None:intergenic |
| ATCCATCATGTGCTGAAACT+AGG | 0.524448 | tig0018513:-237655 | None:intergenic |
| GAAGTTACAAAATCACAAAT+GGG | 0.528232 | tig0018513:-237771 | None:intergenic |
| GGTGGCTGAGCTTGAGCGTG+AGG | 0.529358 | tig0018513:-235094 | None:intergenic |
| ACAAAATAGTTGGTTCATGT+AGG | 0.539542 | tig0018513:-238005 | None:intergenic |
| TCACGCTCAAGCTCAGCCAC+CGG | 0.539551 | tig0018513:+235096 | Msa1367580:CDS |
| AACATTCAAGTTACAGATCA+CGG | 0.540516 | tig0018513:+236059 | Msa1367580:CDS |
| GTGGCTGAGCTTGAGCGTGA+GGG | 0.545346 | tig0018513:-235093 | None:intergenic |
| TAGCGCTTCACCACCACCAC+AGG | 0.546744 | tig0018513:-235127 | None:intergenic |
| ATCCTAGTTTCAGCACATGA+TGG | 0.552536 | tig0018513:+237653 | Msa1367580:CDS |
| AAATAAAGCTTACCTGATGA+GGG | 0.555627 | tig0018513:-237433 | None:intergenic |
| TCATGTGCTGAAACTAGGAT+TGG | 0.568680 | tig0018513:-237650 | None:intergenic |
| GTCAAGCTGTGACACAGAAG+AGG | 0.569534 | tig0018513:-237593 | None:intergenic |
| GGAATCTGGTCCTGTGGTGG+TGG | 0.575807 | tig0018513:+235117 | Msa1367580:CDS |
| CTTGATCGATCAAACAGTGT+TGG | 0.579556 | tig0018513:+235999 | Msa1367580:CDS |
| TAGTTTCAGCACATGATGGA+TGG | 0.583477 | tig0018513:+237657 | Msa1367580:exon |
| GCTATGCTCCGCCCAATCAA+AGG | 0.584395 | tig0018513:+235146 | Msa1367580:CDS |
| CTCACGATCACTAAGAAGCT+GGG | 0.587411 | tig0018513:-236168 | None:intergenic |
| GAACGGTTCCTTTGATTGGG+CGG | 0.595000 | tig0018513:-235154 | None:intergenic |
| GCCACCGGAATCTGGTCCTG+TGG | 0.595031 | tig0018513:+235111 | Msa1367580:CDS |
| AAACCAGTTATGTATTCTGG+TGG | 0.598244 | tig0018513:+237383 | Msa1367580:CDS |
| TCAGCACATGATGGATGGCA+TGG | 0.602398 | tig0018513:+237662 | Msa1367580:exon |
| ACCGGAATCTGGTCCTGTGG+TGG | 0.616133 | tig0018513:+235114 | Msa1367580:CDS |
| ATTGCAATTCACACCTACAC+AGG | 0.627927 | tig0018513:-237846 | None:intergenic |
| AGAAGAGACTGAGAGTCAGA+GGG | 0.632966 | tig0018513:+235056 | Msa1367580:five_prime_UTR |
| AACCAGTTATGTATTCTGGT+GGG | 0.640003 | tig0018513:+237384 | Msa1367580:CDS |
| AATATGTGTGACGCCTGTGT+AGG | 0.649218 | tig0018513:+237833 | Msa1367580:three_prime_UTR |
| ACCGTTCTATCAATAATAGG+CGG | 0.659459 | tig0018513:+235170 | Msa1367580:CDS |
| ACCACAGGACCAGATTCCGG+TGG | 0.684814 | tig0018513:-235112 | None:intergenic |
| TCTGAACTGAGTCCAAACTG+AGG | 0.739116 | tig0018513:-237408 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATAAATAAAGCAT+CGG | - | tig0018513:235329-235348 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAAAAGG+AGG | - | tig0018513:235831-235850 | None:intergenic | 10.0% |
| !! | ACAAAAAACAAAAAAAAAAA+AGG | - | tig0018513:236834-236853 | None:intergenic | 10.0% |
| !!! | TTACATTGATTGAAGTAAAA+AGG | - | tig0018513:235471-235490 | None:intergenic | 20.0% |
| !! | TAATGTATCATCCTAAATAA+TGG | + | tig0018513:235488-235507 | Msa1367580:intron | 20.0% |
| !! | TTATGTGCCTATAATTTATA+GGG | - | tig0018513:235533-235552 | None:intergenic | 20.0% |
| !! | TTCTATCAAATTATGTAGAT+CGG | + | tig0018513:235976-235995 | Msa1367580:intron | 20.0% |
| !!! | TTTTTTGTTTTTTGTGTGTT+TGG | + | tig0018513:236839-236858 | Msa1367580:intron | 20.0% |
| !!! | TTACTTTTTAATCATCTTTG+TGG | + | tig0018513:237156-237175 | Msa1367580:intron | 20.0% |
| !! | ATAAATAATATACGCTCAAA+TGG | - | tig0018513:237230-237249 | None:intergenic | 20.0% |
| !! | TTGAGCGTATATTATTTATA+CGG | + | tig0018513:237231-237250 | Msa1367580:intron | 20.0% |
| !! | AAGATCATGTTAGATTTAAA+AGG | - | tig0018513:237526-237545 | None:intergenic | 20.0% |
| !! | TACATTAGGACTTATATTTA+AGG | + | tig0018513:237873-237892 | Msa1367580:three_prime_UTR | 20.0% |
| !!! | GTTTTGATAATTTAAATGCA+TGG | + | tig0018513:237933-237952 | Msa1367580:three_prime_UTR | 20.0% |
| ! | AGATAGAATTAGAGTTAGTT+GGG | - | tig0018513:235433-235452 | None:intergenic | 25.0% |
| ! | AAGATAGAATTAGAGTTAGT+TGG | - | tig0018513:235434-235453 | None:intergenic | 25.0% |
| !! | TATCATCCTAAATAATGGAA+CGG | + | tig0018513:235493-235512 | Msa1367580:intron | 25.0% |
| ! | CTTATGTGCCTATAATTTAT+AGG | - | tig0018513:235534-235553 | None:intergenic | 25.0% |
| !!! | GAACTATTAGTTTGTATTGT+TGG | + | tig0018513:235567-235586 | Msa1367580:intron | 25.0% |
| ! | CAATGAATCTTCTTGAATAA+TGG | - | tig0018513:236118-236137 | None:intergenic | 25.0% |
| !! | TGTCTAATATTTAGTGTTGA+TGG | + | tig0018513:236704-236723 | Msa1367580:intron | 25.0% |
| !!! | GAATCATTTCATAGTTTTAC+TGG | - | tig0018513:236785-236804 | None:intergenic | 25.0% |
| ! | TAGTCAATTAAAGAAAGAAC+TGG | - | tig0018513:236868-236887 | None:intergenic | 25.0% |
| ! | TTGACTAATTACTATAAGCT+TGG | + | tig0018513:236881-236900 | Msa1367580:intron | 25.0% |
| !!! | AAGGAACAACATATTTTAGT+TGG | - | tig0018513:236983-237002 | None:intergenic | 25.0% |
| ! | AAACACTAATGAACTGTATA+AGG | - | tig0018513:237002-237021 | None:intergenic | 25.0% |
| ! | TATAGTTTCTAAATTGCTGT+TGG | + | tig0018513:237190-237209 | Msa1367580:intron | 25.0% |
| !! | ATAGTTTCTAAATTGCTGTT+GGG | + | tig0018513:237191-237210 | Msa1367580:intron | 25.0% |
| ! | GAAGTTACAAAATCACAAAT+GGG | - | tig0018513:237774-237793 | None:intergenic | 25.0% |
| !! | CATTTGTGATTTTGTAACTT+CGG | + | tig0018513:237773-237792 | Msa1367580:three_prime_UTR | 25.0% |
| ! | GAATTGCAATATCTTACATT+AGG | + | tig0018513:237859-237878 | Msa1367580:three_prime_UTR | 25.0% |
| !! | TAATAAATAAAGCATCGGAC+AGG | - | tig0018513:235324-235343 | None:intergenic | 30.0% |
| ! | TGAGATTTGAAGTAGTTAGT+TGG | - | tig0018513:235406-235425 | None:intergenic | 30.0% |
| ACATATTGGTATTCAACTCA+AGG | - | tig0018513:235651-235670 | None:intergenic | 30.0% | |
| ! | TGAGTTGAATACCAATATGT+TGG | + | tig0018513:235651-235670 | Msa1367580:intron | 30.0% |
| ! | GAACTTTTACATAGATCTGA+TGG | - | tig0018513:235759-235778 | None:intergenic | 30.0% |
| AGAAACAAACAAAATAGAGC+AGG | - | tig0018513:235935-235954 | None:intergenic | 30.0% | |
| ! | AACATTCAAGTTACAGATCA+CGG | + | tig0018513:236059-236078 | Msa1367580:CDS | 30.0% |
| ! | AGAAGATTCATTGCTTTAGA+AGG | + | tig0018513:236125-236144 | Msa1367580:CDS | 30.0% |
| TACAAGTTCTCACAAACAAA+AGG | - | tig0018513:236203-236222 | None:intergenic | 30.0% | |
| TTGTGAGAACTTGTATATGT+TGG | + | tig0018513:236208-236227 | Msa1367580:intron | 30.0% | |
| AAGAACTACAGAAATCATCA+GGG | - | tig0018513:236263-236282 | None:intergenic | 30.0% | |
| AAAGAACTACAGAAATCATC+AGG | - | tig0018513:236264-236283 | None:intergenic | 30.0% | |
| GATGATTTCTGTAGTTCTTT+AGG | + | tig0018513:236264-236283 | Msa1367580:intron | 30.0% | |
| !! | TACCTTCAATTAGTTTGCAT+AGG | + | tig0018513:236333-236352 | Msa1367580:intron | 30.0% |
| ATCCTATGCAAACTAATTGA+AGG | - | tig0018513:236338-236357 | None:intergenic | 30.0% | |
| ! | GATTGAGATATGCAGATTTT+AGG | + | tig0018513:236355-236374 | Msa1367580:intron | 30.0% |
| !!! | ATATGCAGATTTTAGGACTT+AGG | + | tig0018513:236362-236381 | Msa1367580:intron | 30.0% |
| GGAACAATTAACGAAACAAA+AGG | - | tig0018513:236443-236462 | None:intergenic | 30.0% | |
| CAGTTAAAATACGAAAAGAC+AGG | - | tig0018513:236464-236483 | None:intergenic | 30.0% | |
| CAACAGGTAATGTTAATCAA+TGG | - | tig0018513:236561-236580 | None:intergenic | 30.0% | |
| CAAATTTCATAGCATGGAAA+AGG | - | tig0018513:236680-236699 | None:intergenic | 30.0% | |
| ATACAGTTCATTAGTGTTTG+AGG | + | tig0018513:237003-237022 | Msa1367580:intron | 30.0% | |
| TGAACTACATCAAAACACTT+TGG | - | tig0018513:237096-237115 | None:intergenic | 30.0% | |
| TACTATCACCACATTTAAGA+AGG | - | tig0018513:237280-237299 | None:intergenic | 30.0% | |
| TATGTGCTACATATACTCTT+AGG | + | tig0018513:237303-237322 | Msa1367580:intron | 30.0% | |
| !!! | GTTTTTCTGAAATTCGAAAG+AGG | - | tig0018513:237367-237386 | None:intergenic | 30.0% |
| GAAAAACCAGTTATGTATTC+TGG | + | tig0018513:237380-237399 | Msa1367580:intron | 30.0% | |
| AAATAAAGCTTACCTGATGA+GGG | - | tig0018513:237436-237455 | None:intergenic | 30.0% | |
| TAAATAAAGCTTACCTGATG+AGG | - | tig0018513:237437-237456 | None:intergenic | 30.0% | |
| GTTAGATTTAAAAGGCAGAA+GGG | - | tig0018513:237518-237537 | None:intergenic | 30.0% | |
| TGTTAGATTTAAAAGGCAGA+AGG | - | tig0018513:237519-237538 | None:intergenic | 30.0% | |
| CGAAGTTACAAAATCACAAA+TGG | - | tig0018513:237775-237794 | None:intergenic | 30.0% | |
| ! | ACAAAATAGTTGGTTCATGT+AGG | - | tig0018513:238008-238027 | None:intergenic | 30.0% |
| ATAGAACGGTTCCTTTGATT+GGG | - | tig0018513:235160-235179 | None:intergenic | 35.0% | |
| GGAACCGTTCTATCAATAAT+AGG | + | tig0018513:235167-235186 | Msa1367580:CDS | 35.0% | |
| ACCGTTCTATCAATAATAGG+CGG | + | tig0018513:235170-235189 | Msa1367580:CDS | 35.0% | |
| TCCGCCTATTATTGATAGAA+CGG | - | tig0018513:235174-235193 | None:intergenic | 35.0% | |
| AGTTGGAGGAAAGCAAATAA+GGG | - | tig0018513:235389-235408 | None:intergenic | 35.0% | |
| TAGTTGGAGGAAAGCAAATA+AGG | - | tig0018513:235390-235409 | None:intergenic | 35.0% | |
| ! | GATTTGAAGTAGTTAGTTGG+AGG | - | tig0018513:235403-235422 | None:intergenic | 35.0% |
| ! | CTAAATAATGGAACGGATCT+GGG | + | tig0018513:235500-235519 | Msa1367580:intron | 35.0% |
| ACTGGGACCCTATAAATTAT+AGG | + | tig0018513:235523-235542 | Msa1367580:intron | 35.0% | |
| AGTTTGTATTGTTGGATCAG+TGG | + | tig0018513:235575-235594 | Msa1367580:intron | 35.0% | |
| TTAACTCACGATAACAGTGT+TGG | + | tig0018513:235618-235637 | Msa1367580:intron | 35.0% | |
| CTGCTTATTGCATTATAGTG+AGG | + | tig0018513:236481-236500 | Msa1367580:intron | 35.0% | |
| TATTGCATTATAGTGAGGAG+TGG | + | tig0018513:236486-236505 | Msa1367580:intron | 35.0% | |
| ATTGCATTATAGTGAGGAGT+GGG | + | tig0018513:236487-236506 | Msa1367580:intron | 35.0% | |
| !! | TGAATCTTTGGGATTGTTGT+AGG | - | tig0018513:236626-236645 | None:intergenic | 35.0% |
| AACAATCCCAAAGATTCATC+TGG | + | tig0018513:236628-236647 | Msa1367580:CDS | 35.0% | |
| CACTAACCAGATGAATCTTT+GGG | - | tig0018513:236637-236656 | None:intergenic | 35.0% | |
| CAGTGACAAATTTCATAGCA+TGG | - | tig0018513:236686-236705 | None:intergenic | 35.0% | |
| !! | GTTTTCAATCCATTGAGTTG+AGG | + | tig0018513:236756-236775 | Msa1367580:intron | 35.0% |
| ATTGCGATACTTACGACTTA+CGG | + | tig0018513:236938-236957 | Msa1367580:intron | 35.0% | |
| TATCACCACATTTAAGAAGG+CGG | - | tig0018513:237277-237296 | None:intergenic | 35.0% | |
| !! | TTCTGAAATTCGAAAGAGGT+AGG | - | tig0018513:237363-237382 | None:intergenic | 35.0% |
| AAACCAGTTATGTATTCTGG+TGG | + | tig0018513:237383-237402 | Msa1367580:CDS | 35.0% | |
| AACCAGTTATGTATTCTGGT+GGG | + | tig0018513:237384-237403 | Msa1367580:CDS | 35.0% | |
| CAAATGGGTAGTCAAGTAAA+GGG | - | tig0018513:237759-237778 | None:intergenic | 35.0% | |
| ACAAATGGGTAGTCAAGTAA+AGG | - | tig0018513:237760-237779 | None:intergenic | 35.0% | |
| TTTCTCTTTCTGCTTCTGCT+GGG | + | tig0018513:234988-235007 | Msa1367580:five_prime_UTR | 40.0% | |
| ! | TCTCTCTCTCTCTCTAAGAA+AGG | + | tig0018513:235032-235051 | Msa1367580:five_prime_UTR | 40.0% |
| GATAGAACGGTTCCTTTGAT+TGG | - | tig0018513:235161-235180 | None:intergenic | 40.0% | |
| AATAGGCGGAAATCATCATC+TGG | + | tig0018513:235184-235203 | Msa1367580:CDS | 40.0% | |
| CCAGATCCGTTCCATTATTT+AGG | - | tig0018513:235502-235521 | None:intergenic | 40.0% | |
| ! | CCTAAATAATGGAACGGATC+TGG | + | tig0018513:235499-235518 | Msa1367580:intron | 40.0% |
| GAGTTAATATGTGCCTTGGT+TGG | - | tig0018513:235605-235624 | None:intergenic | 40.0% | |
| TCGTGAGTTAATATGTGCCT+TGG | - | tig0018513:235609-235628 | None:intergenic | 40.0% | |
| GAAGGCTAAAGCCAACATAT+TGG | - | tig0018513:235665-235684 | None:intergenic | 40.0% | |
| ATTTATCTCCCATGAGACCA+TGG | - | tig0018513:235694-235713 | None:intergenic | 40.0% | |
| GCATAATTCACAGTGAGCAA+TGG | + | tig0018513:235880-235899 | Msa1367580:intron | 40.0% | |
| CTTGATCGATCAAACAGTGT+TGG | + | tig0018513:235999-236018 | Msa1367580:CDS | 40.0% | |
| GTTCTCACAAACAAAAGGCA+GGG | - | tig0018513:236198-236217 | None:intergenic | 40.0% | |
| AGTTCTCACAAACAAAAGGC+AGG | - | tig0018513:236199-236218 | None:intergenic | 40.0% | |
| TTGCATTATAGTGAGGAGTG+GGG | + | tig0018513:236488-236507 | Msa1367580:intron | 40.0% | |
| TTAACATTACCTGTTGCCCA+TGG | + | tig0018513:236565-236584 | Msa1367580:intron | 40.0% | |
| CCACTAACCAGATGAATCTT+TGG | - | tig0018513:236638-236657 | None:intergenic | 40.0% | |
| CCAAAGATTCATCTGGTTAG+TGG | + | tig0018513:236635-236654 | Msa1367580:intron | 40.0% | |
| AAGGTCAATTACTGCAACAG+TGG | - | tig0018513:236815-236834 | None:intergenic | 40.0% | |
| TTGCGATACTTACGACTTAC+GGG | + | tig0018513:236939-236958 | Msa1367580:intron | 40.0% | |
| TTGATGTAGTTCAAGCTGAG+AGG | + | tig0018513:237103-237122 | Msa1367580:intron | 40.0% | |
| AATAGCCGCCTTCTTAAATG+TGG | + | tig0018513:237269-237288 | Msa1367580:intron | 40.0% | |
| ATTTAAAAGGCAGAAGGGAG+GGG | - | tig0018513:237513-237532 | None:intergenic | 40.0% | |
| GATTTAAAAGGCAGAAGGGA+GGG | - | tig0018513:237514-237533 | None:intergenic | 40.0% | |
| AGATTTAAAAGGCAGAAGGG+AGG | - | tig0018513:237515-237534 | None:intergenic | 40.0% | |
| TCATGTGCTGAAACTAGGAT+TGG | - | tig0018513:237653-237672 | None:intergenic | 40.0% | |
| ATCCTAGTTTCAGCACATGA+TGG | + | tig0018513:237653-237672 | Msa1367580:CDS | 40.0% | |
| ATCCATCATGTGCTGAAACT+AGG | - | tig0018513:237658-237677 | None:intergenic | 40.0% | |
| ! | TAGTTTCAGCACATGATGGA+TGG | + | tig0018513:237657-237676 | Msa1367580:exon | 40.0% |
| ATTGCAATTCACACCTACAC+AGG | - | tig0018513:237849-237868 | None:intergenic | 40.0% | |
| CTTTCTCTTTCTGCTTCTGC+TGG | + | tig0018513:234987-235006 | Msa1367580:five_prime_UTR | 45.0% | |
| AAGAAGAGACTGAGAGTCAG+AGG | + | tig0018513:235055-235074 | Msa1367580:five_prime_UTR | 45.0% | |
| AGAAGAGACTGAGAGTCAGA+GGG | + | tig0018513:235056-235075 | Msa1367580:five_prime_UTR | 45.0% | |
| !! | AATAAAGCATCGGACAGGAC+AGG | - | tig0018513:235319-235338 | None:intergenic | 45.0% |
| ! | CTTTAGCCTTCTATCTGCCA+TGG | + | tig0018513:235674-235693 | Msa1367580:intron | 45.0% |
| ATGAGACCATGGCAGATAGA+AGG | - | tig0018513:235683-235702 | None:intergenic | 45.0% | |
| TTCTATCTGCCATGGTCTCA+TGG | + | tig0018513:235682-235701 | Msa1367580:intron | 45.0% | |
| TCTATCTGCCATGGTCTCAT+GGG | + | tig0018513:235683-235702 | Msa1367580:intron | 45.0% | |
| CTTGTAGCTCTTGATGCAAG+TGG | + | tig0018513:235798-235817 | Msa1367580:intron | 45.0% | |
| ! | GTGAGCAATGGCAAAGCTTT+TGG | + | tig0018513:235892-235911 | Msa1367580:intron | 45.0% |
| AGCAGGAACTGACAGCAAAT+GGG | - | tig0018513:235918-235937 | None:intergenic | 45.0% | |
| CTCACGATCACTAAGAAGCT+GGG | - | tig0018513:236171-236190 | None:intergenic | 45.0% | |
| ACTCACGATCACTAAGAAGC+TGG | - | tig0018513:236172-236191 | None:intergenic | 45.0% | |
| TGCATTATAGTGAGGAGTGG+GGG | + | tig0018513:236489-236508 | Msa1367580:intron | 45.0% | |
| ACCTGGAAACAGAAGTCCAT+GGG | - | tig0018513:236584-236603 | None:intergenic | 45.0% | |
| AACCTGGAAACAGAAGTCCA+TGG | - | tig0018513:236585-236604 | None:intergenic | 45.0% | |
| ATGGACTTCTGTTTCCAGGT+TGG | + | tig0018513:236584-236603 | Msa1367580:intron | 45.0% | |
| TGTATTACAGCTGTCCAACC+TGG | - | tig0018513:236601-236620 | None:intergenic | 45.0% | |
| TACTGGTGACCTCAACTCAA+TGG | - | tig0018513:236768-236787 | None:intergenic | 45.0% | |
| ACTTACGACTTACGGGAGTT+TGG | + | tig0018513:236946-236965 | Msa1367580:intron | 45.0% | |
| GTCCCACCAGAATACATAAC+TGG | - | tig0018513:237389-237408 | None:intergenic | 45.0% | |
| TCTGAACTGAGTCCAAACTG+AGG | - | tig0018513:237411-237430 | None:intergenic | 45.0% | |
| TGTGTCACAGCTTGACTTTC+TGG | + | tig0018513:237600-237619 | Msa1367580:CDS | 45.0% | |
| GTGTCACAGCTTGACTTTCT+GGG | + | tig0018513:237601-237620 | Msa1367580:CDS | 45.0% | |
| ! | TAGGATTGGCACTGTGCATT+TGG | - | tig0018513:237639-237658 | None:intergenic | 45.0% |
| AATATGTGTGACGCCTGTGT+AGG | + | tig0018513:237833-237852 | Msa1367580:three_prime_UTR | 45.0% | |
| !! | AACAAAAAAAAAAAAAAAAA+AGG | - | tig0018513:235834-235853 | None:intergenic | 5.0% |
| GAACGGTTCCTTTGATTGGG+CGG | - | tig0018513:235157-235176 | None:intergenic | 50.0% | |
| ! | TAATGGAACGGATCTGGGAC+TGG | + | tig0018513:235505-235524 | Msa1367580:intron | 50.0% |
| ! | AATGGAACGGATCTGGGACT+GGG | + | tig0018513:235506-235525 | Msa1367580:intron | 50.0% |
| GATCAGTGGATGTCCAACCA+AGG | + | tig0018513:235589-235608 | Msa1367580:intron | 50.0% | |
| GAGCAGGAACTGACAGCAAA+TGG | - | tig0018513:235919-235938 | None:intergenic | 50.0% | |
| AACAGAAGTCCATGGGCAAC+AGG | - | tig0018513:236577-236596 | None:intergenic | 50.0% | |
| ATTCTGGTGGGACCTCAGTT+TGG | + | tig0018513:237396-237415 | Msa1367580:CDS | 50.0% | |
| TCAGTTCAGACTCCCTCATC+AGG | + | tig0018513:237421-237440 | Msa1367580:CDS | 50.0% | |
| CAGCTGGTGACATAATCTGG+GGG | - | tig0018513:237564-237583 | None:intergenic | 50.0% | |
| GCAGCTGGTGACATAATCTG+GGG | - | tig0018513:237565-237584 | None:intergenic | 50.0% | |
| CGCAGCTGGTGACATAATCT+GGG | - | tig0018513:237566-237585 | None:intergenic | 50.0% | |
| TCGCAGCTGGTGACATAATC+TGG | - | tig0018513:237567-237586 | None:intergenic | 50.0% | |
| GTCAAGCTGTGACACAGAAG+AGG | - | tig0018513:237596-237615 | None:intergenic | 50.0% | |
| !! | TCAGCACATGATGGATGGCA+TGG | + | tig0018513:237662-237681 | Msa1367580:exon | 50.0% |
| ACCACCACAGGACCAGATTC+CGG | - | tig0018513:235118-235137 | None:intergenic | 55.0% | |
| GCTATGCTCCGCCCAATCAA+AGG | + | tig0018513:235146-235165 | Msa1367580:CDS | 55.0% | |
| GCCCATGGACTTCTGTTTCC+AGG | + | tig0018513:236580-236599 | Msa1367580:intron | 55.0% | |
| AAAAGGCAGAAGGGAGGGGA+AGG | - | tig0018513:237509-237528 | None:intergenic | 55.0% | |
| GTGGCTGAGCTTGAGCGTGA+GGG | - | tig0018513:235096-235115 | None:intergenic | 60.0% | |
| TCACGCTCAAGCTCAGCCAC+CGG | + | tig0018513:235096-235115 | Msa1367580:CDS | 60.0% | |
| CAAGCTCAGCCACCGGAATC+TGG | + | tig0018513:235103-235122 | Msa1367580:CDS | 60.0% | |
| ACCACAGGACCAGATTCCGG+TGG | - | tig0018513:235115-235134 | None:intergenic | 60.0% | |
| ACCGGAATCTGGTCCTGTGG+TGG | + | tig0018513:235114-235133 | Msa1367580:CDS | 60.0% | |
| GGAATCTGGTCCTGTGGTGG+TGG | + | tig0018513:235117-235136 | Msa1367580:CDS | 60.0% | |
| TAGCGCTTCACCACCACCAC+AGG | - | tig0018513:235130-235149 | None:intergenic | 60.0% | |
| !! | GAAGAGGAAGCACTCGCAGC+TGG | - | tig0018513:237580-237599 | None:intergenic | 60.0% |
| GGTGGCTGAGCTTGAGCGTG+AGG | - | tig0018513:235097-235116 | None:intergenic | 65.0% | |
| GCCACCGGAATCTGGTCCTG+TGG | + | tig0018513:235111-235130 | Msa1367580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018513 | gene | 234968 | 238032 | 234968 | ID=Msa1367580;Name=Msa1367580 |
| tig0018513 | mRNA | 234968 | 238032 | 234968 | ID=Msa1367580-mRNA-1;Parent=Msa1367580;Name=Msa1367580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=111|1|1|1|1|1|5|360|177 |
| tig0018513 | exon | 234968 | 235205 | 234968 | ID=Msa1367580-mRNA-1:exon:15530;Parent=Msa1367580-mRNA-1 |
| tig0018513 | exon | 235994 | 236185 | 235994 | ID=Msa1367580-mRNA-1:exon:15531;Parent=Msa1367580-mRNA-1 |
| tig0018513 | exon | 236602 | 236649 | 236602 | ID=Msa1367580-mRNA-1:exon:15532;Parent=Msa1367580-mRNA-1 |
| tig0018513 | exon | 237381 | 237442 | 237381 | ID=Msa1367580-mRNA-1:exon:15533;Parent=Msa1367580-mRNA-1 |
| tig0018513 | exon | 237568 | 238032 | 237568 | ID=Msa1367580-mRNA-1:exon:15534;Parent=Msa1367580-mRNA-1 |
| tig0018513 | five_prime_UTR | 234968 | 235078 | 234968 | ID=Msa1367580-mRNA-1:five_prime_utr;Parent=Msa1367580-mRNA-1 |
| tig0018513 | CDS | 235079 | 235205 | 235079 | ID=Msa1367580-mRNA-1:cds;Parent=Msa1367580-mRNA-1 |
| tig0018513 | CDS | 235994 | 236185 | 235994 | ID=Msa1367580-mRNA-1:cds;Parent=Msa1367580-mRNA-1 |
| tig0018513 | CDS | 236602 | 236649 | 236602 | ID=Msa1367580-mRNA-1:cds;Parent=Msa1367580-mRNA-1 |
| tig0018513 | CDS | 237381 | 237442 | 237381 | ID=Msa1367580-mRNA-1:cds;Parent=Msa1367580-mRNA-1 |
| tig0018513 | CDS | 237568 | 237672 | 237568 | ID=Msa1367580-mRNA-1:cds;Parent=Msa1367580-mRNA-1 |
| tig0018513 | three_prime_UTR | 237673 | 238032 | 237673 | ID=Msa1367580-mRNA-1:three_prime_utr;Parent=Msa1367580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
