Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524490 | XP_003604062.1 | 71.910 | 178 | 0 | 3 | 1 | 133 | 1 | 173 | 1.75e-74 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524490 | G7J8K4 | 71.910 | 178 | 0 | 3 | 1 | 133 | 1 | 173 | 8.36e-75 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001440 | Msa0524490 | 0.837355 | 5.458659e-57 | -8.615850e-47 |
| Msa0223050 | Msa0524490 | 0.822879 | 1.870613e-53 | -8.615850e-47 |
| Msa0380290 | Msa0524490 | 0.874519 | 6.339018e-68 | -8.615850e-47 |
| Msa0524490 | Msa0735340 | 0.800162 | 1.639993e-48 | -8.615850e-47 |
| Msa0524490 | Msa0797980 | -0.806304 | 8.777177e-50 | -8.615850e-47 |
| Msa0524490 | Msa1367580 | 0.833449 | 5.298141e-56 | -8.615850e-47 |
| Msa0524490 | Msa1409060 | 0.809132 | 2.200968e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524490 | MtrunA17_Chr3g0145751 | 65.278 | 144 | 0 | 3 | 1 | 99 | 1 | 139 | 2.04e-52 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCACAGCTTGACTTTC+TGG | 0.027355 | 3_4:+77957120 | Msa0524490:CDS |
| TGCATTAGGACTTATATTTA+AGG | 0.141077 | 3_4:+77957393 | Msa0524490:three_prime_UTR |
| CCACTAACCAGATGAATCTT+TGG | 0.290343 | 3_4:-77956157 | None:intergenic |
| TGAATCTTTGGGATTGTTGT+AGG | 0.326660 | 3_4:-77956145 | None:intergenic |
| GGAACCGTTCTATCAATAAT+AGG | 0.344648 | 3_4:+77954658 | Msa0524490:CDS |
| CTTTCTCTTTCTGCTTCTGC+TGG | 0.345415 | 3_4:+77954465 | Msa0524490:five_prime_UTR |
| GATAGAACGGTTCCTTTGAT+TGG | 0.354075 | 3_4:-77954649 | None:intergenic |
| GAATTGCAATATCTTGCATT+AGG | 0.362070 | 3_4:+77957379 | Msa0524490:three_prime_UTR |
| GTGTCACAGCTTGACTTTCT+GGG | 0.362844 | 3_4:+77957121 | Msa0524490:CDS |
| TAGGATTGGCACTGTGCATT+TGG | 0.363887 | 3_4:-77957156 | None:intergenic |
| ATTCTGGTGGGACCTCAGTT+TGG | 0.371991 | 3_4:+77956917 | Msa0524490:CDS |
| CAAGCTCAGCCACCGGAATC+TGG | 0.379086 | 3_4:+77954594 | Msa0524490:CDS |
| CGAAGTTACAAAATCACAAA+TGG | 0.387457 | 3_4:-77957292 | None:intergenic |
| CACTAACCAGATGAATCTTT+GGG | 0.397232 | 3_4:-77956156 | None:intergenic |
| ATAGAACGGTTCCTTTGATT+GGG | 0.430840 | 3_4:-77954648 | None:intergenic |
| AAGAAGAGACTGAGAGTCAG+AGG | 0.454007 | 3_4:+77954540 | Msa0524490:five_prime_UTR |
| GTCCCACCAGAATACATAAC+TGG | 0.456812 | 3_4:-77956907 | None:intergenic |
| GAAAATAAGGACAAAATAGT+TGG | 0.469040 | 3_4:-77957535 | None:intergenic |
| TCAGTTCAGACTCCCTCATC+AGG | 0.470456 | 3_4:+77956942 | Msa0524490:CDS |
| AACAATCCCAAAGATTCATC+TGG | 0.471111 | 3_4:+77956150 | Msa0524490:CDS |
| ACAAATGGGTAGTCAAGTAA+AGG | 0.483918 | 3_4:-77957277 | None:intergenic |
| TAAATAAAGCTTACCTGATG+AGG | 0.484449 | 3_4:-77956955 | None:intergenic |
| GAAGAGGAAGCACTCGCAGC+TGG | 0.484647 | 3_4:-77957097 | None:intergenic |
| CAAATGGGTAGTCAAGTAAA+GGG | 0.492979 | 3_4:-77957276 | None:intergenic |
| ACCACCACAGGACCAGATTC+CGG | 0.497624 | 3_4:-77954606 | None:intergenic |
| ATCCATCACGTGCTGAAACT+AGG | 0.499372 | 3_4:-77957175 | None:intergenic |
| AATAGGCGGAAATCATCATC+TGG | 0.506410 | 3_4:+77954675 | Msa0524490:CDS |
| TCCGCCTATTATTGATAGAA+CGG | 0.520342 | 3_4:-77954662 | None:intergenic |
| GAAGTTACAAAATCACAAAT+GGG | 0.528232 | 3_4:-77957291 | None:intergenic |
| ACAAAATAGTTGGTTCATGT+AGG | 0.539542 | 3_4:-77957525 | None:intergenic |
| TAGCGCTTCACCACCACCAC+AGG | 0.546744 | 3_4:-77954618 | None:intergenic |
| TGAGCTTGAGCTTGAGCGTG+AGG | 0.552238 | 3_4:-77954579 | None:intergenic |
| TCAAGCTCAAGCTCAGCCAC+CGG | 0.553933 | 3_4:+77954587 | Msa0524490:CDS |
| AAATAAAGCTTACCTGATGA+GGG | 0.555627 | 3_4:-77956954 | None:intergenic |
| TAGTTTCAGCACGTGATGGA+TGG | 0.559407 | 3_4:+77957177 | Msa0524490:exon |
| GTCAAGCTGTGACACAGAAG+AGG | 0.569534 | 3_4:-77957113 | None:intergenic |
| GGAATCTGGTCCTGTGGTGG+TGG | 0.575807 | 3_4:+77954608 | Msa0524490:CDS |
| ATCCTAGTTTCAGCACGTGA+TGG | 0.576996 | 3_4:+77957173 | Msa0524490:CDS |
| CTTGATCGATCAAACAGTGT+TGG | 0.579556 | 3_4:+77955521 | Msa0524490:CDS |
| TCACGTGCTGAAACTAGGAT+TGG | 0.583395 | 3_4:-77957170 | None:intergenic |
| GCTATGCTCCGCCCAATCAA+AGG | 0.584395 | 3_4:+77954637 | Msa0524490:CDS |
| GAACGGTTCCTTTGATTGGG+CGG | 0.595000 | 3_4:-77954645 | None:intergenic |
| GCCACCGGAATCTGGTCCTG+TGG | 0.595031 | 3_4:+77954602 | Msa0524490:CDS |
| AAACCAGTTATGTATTCTGG+TGG | 0.598244 | 3_4:+77956904 | Msa0524490:CDS |
| GAGCTTGAGCTTGAGCGTGA+GGG | 0.601515 | 3_4:-77954578 | None:intergenic |
| TCAGCACGTGATGGATGGCA+TGG | 0.614177 | 3_4:+77957182 | Msa0524490:exon |
| ACCGGAATCTGGTCCTGTGG+TGG | 0.616133 | 3_4:+77954605 | Msa0524490:CDS |
| ATTGCAATTCACACCTACAC+AGG | 0.627927 | 3_4:-77957366 | None:intergenic |
| AGAAGAGACTGAGAGTCAGA+GGG | 0.632966 | 3_4:+77954541 | Msa0524490:five_prime_UTR |
| AACCAGTTATGTATTCTGGT+GGG | 0.640003 | 3_4:+77956905 | Msa0524490:CDS |
| AATATGTGTGACGCCTGTGT+AGG | 0.649218 | 3_4:+77957353 | Msa0524490:three_prime_UTR |
| ACCGTTCTATCAATAATAGG+CGG | 0.659459 | 3_4:+77954661 | Msa0524490:CDS |
| ACCACAGGACCAGATTCCGG+TGG | 0.684814 | 3_4:-77954603 | None:intergenic |
| TCTGAACTGAGTCCAAACTG+AGG | 0.739116 | 3_4:-77956929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATAAATAAAGCAT+CGG | - | chr3_4:77954850-77954869 | None:intergenic | 10.0% |
| !! | ACAAACAAAAAAAAAAAAAA+AGG | - | chr3_4:77955359-77955378 | None:intergenic | 10.0% |
| !! | AGTAAAGAATTAAAGAAAAA+AGG | - | chr3_4:77954729-77954748 | None:intergenic | 15.0% |
| !! | AACAAAAAAAAAAAAAAAGG+AGG | - | chr3_4:77955356-77955375 | None:intergenic | 15.0% |
| !! | CACAAAAAACAAAAAAAAAA+AGG | - | chr3_4:77956356-77956375 | None:intergenic | 15.0% |
| !!! | TTACATTGATTGAAGTAAAA+AGG | - | chr3_4:77954992-77955011 | None:intergenic | 20.0% |
| !! | TAATGTATCATCCTAAATAA+TGG | + | chr3_4:77955009-77955028 | Msa0524490:intron | 20.0% |
| !! | TTATGTGCCTATAATTTATA+GGG | - | chr3_4:77955058-77955077 | None:intergenic | 20.0% |
| !! | TTCTATCAAATTATGTAGAT+CGG | + | chr3_4:77955498-77955517 | Msa0524490:intron | 20.0% |
| !!! | TTTTTTGTTTTTTGTGTGTT+TGG | + | chr3_4:77956360-77956379 | Msa0524490:intron | 20.0% |
| !!! | TTACTTTTTAATCATCTTTG+TGG | + | chr3_4:77956677-77956696 | Msa0524490:intron | 20.0% |
| !! | ATAAATAATATACGCTCAAA+TGG | - | chr3_4:77956751-77956770 | None:intergenic | 20.0% |
| !! | TTGAGCGTATATTATTTATA+CGG | + | chr3_4:77956752-77956771 | Msa0524490:intron | 20.0% |
| !! | AAGATCATGTTAGATTTAAA+AGG | - | chr3_4:77957046-77957065 | None:intergenic | 20.0% |
| !!! | GTTTTGATAATTTAAATGCA+TGG | + | chr3_4:77957453-77957472 | Msa0524490:three_prime_UTR | 20.0% |
| ! | AGATAGAATTAGAGTTAGTT+GGG | - | chr3_4:77954954-77954973 | None:intergenic | 25.0% |
| ! | AAGATAGAATTAGAGTTAGT+TGG | - | chr3_4:77954955-77954974 | None:intergenic | 25.0% |
| !! | TATCATCCTAAATAATGGAA+CGG | + | chr3_4:77955014-77955033 | Msa0524490:intron | 25.0% |
| ! | CTTATGTGCCTATAATTTAT+AGG | - | chr3_4:77955059-77955078 | None:intergenic | 25.0% |
| !!! | GAACTATTAGTTTGTATTGT+TGG | + | chr3_4:77955092-77955111 | Msa0524490:intron | 25.0% |
| ! | CAATGAATCTTCTTGAATAA+TGG | - | chr3_4:77955640-77955659 | None:intergenic | 25.0% |
| !! | TGTCTAATATTTAGTGTTGA+TGG | + | chr3_4:77956226-77956245 | Msa0524490:intron | 25.0% |
| !!! | GAATCATTTCATAGTTTTAC+TGG | - | chr3_4:77956307-77956326 | None:intergenic | 25.0% |
| ! | TAGTCAATTAAAGAAAGAAC+TGG | - | chr3_4:77956389-77956408 | None:intergenic | 25.0% |
| ! | TTGACTAATTACTATAAGCT+TGG | + | chr3_4:77956402-77956421 | Msa0524490:intron | 25.0% |
| !!! | AAGGAACAACATATTTTAGT+TGG | - | chr3_4:77956504-77956523 | None:intergenic | 25.0% |
| ! | AAACACTAATGAACTGTATA+AGG | - | chr3_4:77956523-77956542 | None:intergenic | 25.0% |
| ! | TATAGTTTCTAAATTGCTGT+TGG | + | chr3_4:77956711-77956730 | Msa0524490:intron | 25.0% |
| !! | ATAGTTTCTAAATTGCTGTT+GGG | + | chr3_4:77956712-77956731 | Msa0524490:intron | 25.0% |
| ! | GAAGTTACAAAATCACAAAT+GGG | - | chr3_4:77957294-77957313 | None:intergenic | 25.0% |
| !! | CATTTGTGATTTTGTAACTT+CGG | + | chr3_4:77957293-77957312 | Msa0524490:three_prime_UTR | 25.0% |
| ! | TGCATTAGGACTTATATTTA+AGG | + | chr3_4:77957393-77957412 | Msa0524490:three_prime_UTR | 25.0% |
| !! | TAATAAATAAAGCATCGGAC+AGG | - | chr3_4:77954845-77954864 | None:intergenic | 30.0% |
| ! | TGAGATTTGAAGTAGTTAGT+TGG | - | chr3_4:77954927-77954946 | None:intergenic | 30.0% |
| ACATATTGGTATTCAACTCA+AGG | - | chr3_4:77955176-77955195 | None:intergenic | 30.0% | |
| ! | TGAGTTGAATACCAATATGT+TGG | + | chr3_4:77955176-77955195 | Msa0524490:intron | 30.0% |
| ! | GAACTTTTACATAGATCTGA+TGG | - | chr3_4:77955284-77955303 | None:intergenic | 30.0% |
| AGAAACAAACAAAATAGAGC+AGG | - | chr3_4:77955457-77955476 | None:intergenic | 30.0% | |
| ! | AACATTCAAGTTACAGATCA+CGG | + | chr3_4:77955581-77955600 | Msa0524490:intron | 30.0% |
| ! | AGAAGATTCATTGCTTTAGA+AGG | + | chr3_4:77955647-77955666 | Msa0524490:intron | 30.0% |
| TACAAGTTCTCACAAACAAA+AGG | - | chr3_4:77955725-77955744 | None:intergenic | 30.0% | |
| TTGTGAGAACTTGTATATGT+TGG | + | chr3_4:77955730-77955749 | Msa0524490:intron | 30.0% | |
| AAGAACTACAGAAATCATCA+GGG | - | chr3_4:77955785-77955804 | None:intergenic | 30.0% | |
| AAAGAACTACAGAAATCATC+AGG | - | chr3_4:77955786-77955805 | None:intergenic | 30.0% | |
| GATGATTTCTGTAGTTCTTT+AGG | + | chr3_4:77955786-77955805 | Msa0524490:intron | 30.0% | |
| !! | TACCTTCAATTAGTTTGCAT+AGG | + | chr3_4:77955855-77955874 | Msa0524490:intron | 30.0% |
| ATCCTATGCAAACTAATTGA+AGG | - | chr3_4:77955860-77955879 | None:intergenic | 30.0% | |
| ! | GATTGAGATATGCAGATTTT+AGG | + | chr3_4:77955877-77955896 | Msa0524490:intron | 30.0% |
| !!! | ATATGCAGATTTTAGGACTT+AGG | + | chr3_4:77955884-77955903 | Msa0524490:intron | 30.0% |
| GGAACAATTAACGAAACAAA+AGG | - | chr3_4:77955965-77955984 | None:intergenic | 30.0% | |
| CAGTTAAAATACGAAAAGAC+AGG | - | chr3_4:77955986-77956005 | None:intergenic | 30.0% | |
| CAACAGGTAATGTTAATCAA+TGG | - | chr3_4:77956083-77956102 | None:intergenic | 30.0% | |
| CAAATTTCATAGCATGGAAA+AGG | - | chr3_4:77956202-77956221 | None:intergenic | 30.0% | |
| ATACAGTTCATTAGTGTTTG+AGG | + | chr3_4:77956524-77956543 | Msa0524490:intron | 30.0% | |
| TGAACTACATCAAAACACTT+TGG | - | chr3_4:77956617-77956636 | None:intergenic | 30.0% | |
| TACTATCACCACATTTAAGA+AGG | - | chr3_4:77956801-77956820 | None:intergenic | 30.0% | |
| TATGTGCTACATATACTCTT+AGG | + | chr3_4:77956824-77956843 | Msa0524490:intron | 30.0% | |
| !!! | GTTTTTCTGAAATTCGAAAG+AGG | - | chr3_4:77956888-77956907 | None:intergenic | 30.0% |
| GAAAAACCAGTTATGTATTC+TGG | + | chr3_4:77956901-77956920 | Msa0524490:intron | 30.0% | |
| AAATAAAGCTTACCTGATGA+GGG | - | chr3_4:77956957-77956976 | None:intergenic | 30.0% | |
| TAAATAAAGCTTACCTGATG+AGG | - | chr3_4:77956958-77956977 | None:intergenic | 30.0% | |
| GTTAGATTTAAAAGGCAGAA+GGG | - | chr3_4:77957038-77957057 | None:intergenic | 30.0% | |
| TGTTAGATTTAAAAGGCAGA+AGG | - | chr3_4:77957039-77957058 | None:intergenic | 30.0% | |
| CGAAGTTACAAAATCACAAA+TGG | - | chr3_4:77957295-77957314 | None:intergenic | 30.0% | |
| GAATTGCAATATCTTGCATT+AGG | + | chr3_4:77957379-77957398 | Msa0524490:three_prime_UTR | 30.0% | |
| ! | ACAAAATAGTTGGTTCATGT+AGG | - | chr3_4:77957528-77957547 | None:intergenic | 30.0% |
| ATAGAACGGTTCCTTTGATT+GGG | - | chr3_4:77954651-77954670 | None:intergenic | 35.0% | |
| GGAACCGTTCTATCAATAAT+AGG | + | chr3_4:77954658-77954677 | Msa0524490:CDS | 35.0% | |
| ACCGTTCTATCAATAATAGG+CGG | + | chr3_4:77954661-77954680 | Msa0524490:CDS | 35.0% | |
| TCCGCCTATTATTGATAGAA+CGG | - | chr3_4:77954665-77954684 | None:intergenic | 35.0% | |
| AGTTGGAGGAAAGCAAATAA+GGG | - | chr3_4:77954910-77954929 | None:intergenic | 35.0% | |
| TAGTTGGAGGAAAGCAAATA+AGG | - | chr3_4:77954911-77954930 | None:intergenic | 35.0% | |
| ! | GATTTGAAGTAGTTAGTTGG+AGG | - | chr3_4:77954924-77954943 | None:intergenic | 35.0% |
| ! | ATCCTAAATAATGGAACGGA+TGG | + | chr3_4:77955018-77955037 | Msa0524490:intron | 35.0% |
| ! | TCCTAAATAATGGAACGGAT+GGG | + | chr3_4:77955019-77955038 | Msa0524490:intron | 35.0% |
| ACTGGGACCCTATAAATTAT+AGG | + | chr3_4:77955048-77955067 | Msa0524490:intron | 35.0% | |
| AGTTTGTATTGTTGGATCAG+TGG | + | chr3_4:77955100-77955119 | Msa0524490:intron | 35.0% | |
| TTAACTCACGATAACAGTGT+TGG | + | chr3_4:77955143-77955162 | Msa0524490:intron | 35.0% | |
| CTGCTTATTGCATTATAGTG+AGG | + | chr3_4:77956003-77956022 | Msa0524490:intron | 35.0% | |
| TATTGCATTATAGTGAGGAG+TGG | + | chr3_4:77956008-77956027 | Msa0524490:intron | 35.0% | |
| ATTGCATTATAGTGAGGAGT+GGG | + | chr3_4:77956009-77956028 | Msa0524490:intron | 35.0% | |
| !! | TGAATCTTTGGGATTGTTGT+AGG | - | chr3_4:77956148-77956167 | None:intergenic | 35.0% |
| AACAATCCCAAAGATTCATC+TGG | + | chr3_4:77956150-77956169 | Msa0524490:CDS | 35.0% | |
| CACTAACCAGATGAATCTTT+GGG | - | chr3_4:77956159-77956178 | None:intergenic | 35.0% | |
| CAGTGACAAATTTCATAGCA+TGG | - | chr3_4:77956208-77956227 | None:intergenic | 35.0% | |
| !! | GTTTTCAATCCATTGAGTTG+AGG | + | chr3_4:77956278-77956297 | Msa0524490:intron | 35.0% |
| ATTGCGATACTTACGACTTA+CGG | + | chr3_4:77956459-77956478 | Msa0524490:intron | 35.0% | |
| TATCACCACATTTAAGAAGG+CGG | - | chr3_4:77956798-77956817 | None:intergenic | 35.0% | |
| !! | TTCTGAAATTCGAAAGAGGT+AGG | - | chr3_4:77956884-77956903 | None:intergenic | 35.0% |
| AAACCAGTTATGTATTCTGG+TGG | + | chr3_4:77956904-77956923 | Msa0524490:CDS | 35.0% | |
| AACCAGTTATGTATTCTGGT+GGG | + | chr3_4:77956905-77956924 | Msa0524490:CDS | 35.0% | |
| CAAATGGGTAGTCAAGTAAA+GGG | - | chr3_4:77957279-77957298 | None:intergenic | 35.0% | |
| ACAAATGGGTAGTCAAGTAA+AGG | - | chr3_4:77957280-77957299 | None:intergenic | 35.0% | |
| ! | TCTCTCTCTCTCTCTAAGAA+AGG | + | chr3_4:77954517-77954536 | Msa0524490:five_prime_UTR | 40.0% |
| GATAGAACGGTTCCTTTGAT+TGG | - | chr3_4:77954652-77954671 | None:intergenic | 40.0% | |
| AATAGGCGGAAATCATCATC+TGG | + | chr3_4:77954675-77954694 | Msa0524490:CDS | 40.0% | |
| TCCCATCCGTTCCATTATTT+AGG | - | chr3_4:77955023-77955042 | None:intergenic | 40.0% | |
| GAGTTAATATGTGCCTTGGT+TGG | - | chr3_4:77955130-77955149 | None:intergenic | 40.0% | |
| TCGTGAGTTAATATGTGCCT+TGG | - | chr3_4:77955134-77955153 | None:intergenic | 40.0% | |
| GAAGGCTAAAGCCAACATAT+TGG | - | chr3_4:77955190-77955209 | None:intergenic | 40.0% | |
| ATTTATCTCCCATGAGACCA+TGG | - | chr3_4:77955219-77955238 | None:intergenic | 40.0% | |
| GCATAATTCACAGTGAGCAA+TGG | + | chr3_4:77955402-77955421 | Msa0524490:intron | 40.0% | |
| CTTGATCGATCAAACAGTGT+TGG | + | chr3_4:77955521-77955540 | Msa0524490:CDS | 40.0% | |
| GTTCTCACAAACAAAAGGCA+GGG | - | chr3_4:77955720-77955739 | None:intergenic | 40.0% | |
| AGTTCTCACAAACAAAAGGC+AGG | - | chr3_4:77955721-77955740 | None:intergenic | 40.0% | |
| TTGCATTATAGTGAGGAGTG+GGG | + | chr3_4:77956010-77956029 | Msa0524490:intron | 40.0% | |
| TTAACATTACCTGTTGCCCA+TGG | + | chr3_4:77956087-77956106 | Msa0524490:intron | 40.0% | |
| CCACTAACCAGATGAATCTT+TGG | - | chr3_4:77956160-77956179 | None:intergenic | 40.0% | |
| CCAAAGATTCATCTGGTTAG+TGG | + | chr3_4:77956157-77956176 | Msa0524490:intron | 40.0% | |
| AAGGTCAATTACTGCAACAG+TGG | - | chr3_4:77956337-77956356 | None:intergenic | 40.0% | |
| TTGCGATACTTACGACTTAC+GGG | + | chr3_4:77956460-77956479 | Msa0524490:intron | 40.0% | |
| TTGATGTAGTTCAAGCTGAG+AGG | + | chr3_4:77956624-77956643 | Msa0524490:intron | 40.0% | |
| AATAGCCGCCTTCTTAAATG+TGG | + | chr3_4:77956790-77956809 | Msa0524490:intron | 40.0% | |
| ATTTAAAAGGCAGAAGGGAG+GGG | - | chr3_4:77957033-77957052 | None:intergenic | 40.0% | |
| GATTTAAAAGGCAGAAGGGA+GGG | - | chr3_4:77957034-77957053 | None:intergenic | 40.0% | |
| AGATTTAAAAGGCAGAAGGG+AGG | - | chr3_4:77957035-77957054 | None:intergenic | 40.0% | |
| ATTGCAATTCACACCTACAC+AGG | - | chr3_4:77957369-77957388 | None:intergenic | 40.0% | |
| CTTTCTCTTTCTGCTTCTGC+TGG | + | chr3_4:77954465-77954484 | Msa0524490:five_prime_UTR | 45.0% | |
| AAGAAGAGACTGAGAGTCAG+AGG | + | chr3_4:77954540-77954559 | Msa0524490:five_prime_UTR | 45.0% | |
| AGAAGAGACTGAGAGTCAGA+GGG | + | chr3_4:77954541-77954560 | Msa0524490:five_prime_UTR | 45.0% | |
| !! | AATAAAGCATCGGACAGGAC+AGG | - | chr3_4:77954840-77954859 | None:intergenic | 45.0% |
| ! | AATAATGGAACGGATGGGAC+TGG | + | chr3_4:77955024-77955043 | Msa0524490:intron | 45.0% |
| ! | ATAATGGAACGGATGGGACT+GGG | + | chr3_4:77955025-77955044 | Msa0524490:intron | 45.0% |
| ! | CTTTAGCCTTCTATCTGCCA+TGG | + | chr3_4:77955199-77955218 | Msa0524490:intron | 45.0% |
| ATGAGACCATGGCAGATAGA+AGG | - | chr3_4:77955208-77955227 | None:intergenic | 45.0% | |
| TTCTATCTGCCATGGTCTCA+TGG | + | chr3_4:77955207-77955226 | Msa0524490:intron | 45.0% | |
| TCTATCTGCCATGGTCTCAT+GGG | + | chr3_4:77955208-77955227 | Msa0524490:intron | 45.0% | |
| CTTGTAGCTCTTGATGCAAG+TGG | + | chr3_4:77955323-77955342 | Msa0524490:intron | 45.0% | |
| ! | GTGAGCAATGGCAAAGCTTT+TGG | + | chr3_4:77955414-77955433 | Msa0524490:intron | 45.0% |
| AGCAGGAACTGACAGCAAAT+GGG | - | chr3_4:77955440-77955459 | None:intergenic | 45.0% | |
| CTCACGATCACTAAGAAGCT+GGG | - | chr3_4:77955693-77955712 | None:intergenic | 45.0% | |
| ACTCACGATCACTAAGAAGC+TGG | - | chr3_4:77955694-77955713 | None:intergenic | 45.0% | |
| TGCATTATAGTGAGGAGTGG+GGG | + | chr3_4:77956011-77956030 | Msa0524490:intron | 45.0% | |
| ACCTGGAAACAGAAGTCCAT+GGG | - | chr3_4:77956106-77956125 | None:intergenic | 45.0% | |
| AACCTGGAAACAGAAGTCCA+TGG | - | chr3_4:77956107-77956126 | None:intergenic | 45.0% | |
| ATGGACTTCTGTTTCCAGGT+TGG | + | chr3_4:77956106-77956125 | Msa0524490:intron | 45.0% | |
| TGTATTACAGCTGTCCAACC+TGG | - | chr3_4:77956123-77956142 | None:intergenic | 45.0% | |
| TACTGGTGACCTCAACTCAA+TGG | - | chr3_4:77956290-77956309 | None:intergenic | 45.0% | |
| ACTTACGACTTACGGGAGTT+TGG | + | chr3_4:77956467-77956486 | Msa0524490:intron | 45.0% | |
| GTCCCACCAGAATACATAAC+TGG | - | chr3_4:77956910-77956929 | None:intergenic | 45.0% | |
| TCTGAACTGAGTCCAAACTG+AGG | - | chr3_4:77956932-77956951 | None:intergenic | 45.0% | |
| TGTGTCACAGCTTGACTTTC+TGG | + | chr3_4:77957120-77957139 | Msa0524490:CDS | 45.0% | |
| GTGTCACAGCTTGACTTTCT+GGG | + | chr3_4:77957121-77957140 | Msa0524490:CDS | 45.0% | |
| ! | TAGGATTGGCACTGTGCATT+TGG | - | chr3_4:77957159-77957178 | None:intergenic | 45.0% |
| TCACGTGCTGAAACTAGGAT+TGG | - | chr3_4:77957173-77957192 | None:intergenic | 45.0% | |
| ATCCTAGTTTCAGCACGTGA+TGG | + | chr3_4:77957173-77957192 | Msa0524490:CDS | 45.0% | |
| ATCCATCACGTGCTGAAACT+AGG | - | chr3_4:77957178-77957197 | None:intergenic | 45.0% | |
| ! | TAGTTTCAGCACGTGATGGA+TGG | + | chr3_4:77957177-77957196 | Msa0524490:exon | 45.0% |
| AATATGTGTGACGCCTGTGT+AGG | + | chr3_4:77957353-77957372 | Msa0524490:three_prime_UTR | 45.0% | |
| GAACGGTTCCTTTGATTGGG+CGG | - | chr3_4:77954648-77954667 | None:intergenic | 50.0% | |
| GATCAGTGGATGTCCAACCA+AGG | + | chr3_4:77955114-77955133 | Msa0524490:intron | 50.0% | |
| GAGCAGGAACTGACAGCAAA+TGG | - | chr3_4:77955441-77955460 | None:intergenic | 50.0% | |
| AACAGAAGTCCATGGGCAAC+AGG | - | chr3_4:77956099-77956118 | None:intergenic | 50.0% | |
| ATTCTGGTGGGACCTCAGTT+TGG | + | chr3_4:77956917-77956936 | Msa0524490:CDS | 50.0% | |
| TCAGTTCAGACTCCCTCATC+AGG | + | chr3_4:77956942-77956961 | Msa0524490:CDS | 50.0% | |
| CAGCTGGTGACATAATCTGG+GGG | - | chr3_4:77957084-77957103 | None:intergenic | 50.0% | |
| GCAGCTGGTGACATAATCTG+GGG | - | chr3_4:77957085-77957104 | None:intergenic | 50.0% | |
| CGCAGCTGGTGACATAATCT+GGG | - | chr3_4:77957086-77957105 | None:intergenic | 50.0% | |
| TCGCAGCTGGTGACATAATC+TGG | - | chr3_4:77957087-77957106 | None:intergenic | 50.0% | |
| GTCAAGCTGTGACACAGAAG+AGG | - | chr3_4:77957116-77957135 | None:intergenic | 50.0% | |
| GAGCTTGAGCTTGAGCGTGA+GGG | - | chr3_4:77954581-77954600 | None:intergenic | 55.0% | |
| TGAGCTTGAGCTTGAGCGTG+AGG | - | chr3_4:77954582-77954601 | None:intergenic | 55.0% | |
| TCAAGCTCAAGCTCAGCCAC+CGG | + | chr3_4:77954587-77954606 | Msa0524490:CDS | 55.0% | |
| ACCACCACAGGACCAGATTC+CGG | - | chr3_4:77954609-77954628 | None:intergenic | 55.0% | |
| GCTATGCTCCGCCCAATCAA+AGG | + | chr3_4:77954637-77954656 | Msa0524490:CDS | 55.0% | |
| GCCCATGGACTTCTGTTTCC+AGG | + | chr3_4:77956102-77956121 | Msa0524490:intron | 55.0% | |
| AAAAGGCAGAAGGGAGGGGA+AGG | - | chr3_4:77957029-77957048 | None:intergenic | 55.0% | |
| !! | TCAGCACGTGATGGATGGCA+TGG | + | chr3_4:77957182-77957201 | Msa0524490:exon | 55.0% |
| CAAGCTCAGCCACCGGAATC+TGG | + | chr3_4:77954594-77954613 | Msa0524490:CDS | 60.0% | |
| ACCACAGGACCAGATTCCGG+TGG | - | chr3_4:77954606-77954625 | None:intergenic | 60.0% | |
| ACCGGAATCTGGTCCTGTGG+TGG | + | chr3_4:77954605-77954624 | Msa0524490:CDS | 60.0% | |
| GGAATCTGGTCCTGTGGTGG+TGG | + | chr3_4:77954608-77954627 | Msa0524490:CDS | 60.0% | |
| TAGCGCTTCACCACCACCAC+AGG | - | chr3_4:77954621-77954640 | None:intergenic | 60.0% | |
| GAACGGATGGGACTGGGACT+GGG | + | chr3_4:77955031-77955050 | Msa0524490:intron | 60.0% | |
| !! | GAAGAGGAAGCACTCGCAGC+TGG | - | chr3_4:77957100-77957119 | None:intergenic | 60.0% |
| GCCACCGGAATCTGGTCCTG+TGG | + | chr3_4:77954602-77954621 | Msa0524490:CDS | 65.0% | |
| GGAACGGATGGGACTGGGAC+TGG | + | chr3_4:77955030-77955049 | Msa0524490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77954446 | 77957552 | 77954446 | ID=Msa0524490;Name=Msa0524490 |
| chr3_4 | mRNA | 77954446 | 77957552 | 77954446 | ID=Msa0524490-mRNA-1;Parent=Msa0524490;Name=Msa0524490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=118|0.75|0.6|1|0.75|0.6|5|360|133 |
| chr3_4 | exon | 77954446 | 77954696 | 77954446 | ID=Msa0524490-mRNA-1:exon:22960;Parent=Msa0524490-mRNA-1 |
| chr3_4 | exon | 77955516 | 77955589 | 77955516 | ID=Msa0524490-mRNA-1:exon:22961;Parent=Msa0524490-mRNA-1 |
| chr3_4 | exon | 77956144 | 77956171 | 77956144 | ID=Msa0524490-mRNA-1:exon:22962;Parent=Msa0524490-mRNA-1 |
| chr3_4 | exon | 77956902 | 77956963 | 77956902 | ID=Msa0524490-mRNA-1:exon:22963;Parent=Msa0524490-mRNA-1 |
| chr3_4 | exon | 77957088 | 77957552 | 77957088 | ID=Msa0524490-mRNA-1:exon:22964;Parent=Msa0524490-mRNA-1 |
| chr3_4 | five_prime_UTR | 77954446 | 77954563 | 77954446 | ID=Msa0524490-mRNA-1:five_prime_utr;Parent=Msa0524490-mRNA-1 |
| chr3_4 | CDS | 77954564 | 77954696 | 77954564 | ID=Msa0524490-mRNA-1:cds;Parent=Msa0524490-mRNA-1 |
| chr3_4 | CDS | 77955516 | 77955589 | 77955516 | ID=Msa0524490-mRNA-1:cds;Parent=Msa0524490-mRNA-1 |
| chr3_4 | CDS | 77956144 | 77956171 | 77956144 | ID=Msa0524490-mRNA-1:cds;Parent=Msa0524490-mRNA-1 |
| chr3_4 | CDS | 77956902 | 77956963 | 77956902 | ID=Msa0524490-mRNA-1:cds;Parent=Msa0524490-mRNA-1 |
| chr3_4 | CDS | 77957088 | 77957192 | 77957088 | ID=Msa0524490-mRNA-1:cds;Parent=Msa0524490-mRNA-1 |
| chr3_4 | three_prime_UTR | 77957193 | 77957552 | 77957193 | ID=Msa0524490-mRNA-1:three_prime_utr;Parent=Msa0524490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
