Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380290 | XP_003604062.1 | 92.896 | 183 | 3 | 3 | 1 | 183 | 1 | 173 | 1.74e-114 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380290 | G7J8K4 | 92.896 | 183 | 3 | 3 | 1 | 183 | 1 | 173 | 8.30e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001440 | Msa0380290 | 0.892160 | 2.049775e-74 | -8.615850e-47 |
| Msa0007810 | Msa0380290 | -0.803615 | 3.202893e-49 | -8.615850e-47 |
| Msa0050310 | Msa0380290 | -0.802763 | 4.808318e-49 | -8.615850e-47 |
| Msa0056230 | Msa0380290 | -0.800302 | 1.536272e-48 | -8.615850e-47 |
| Msa0227790 | Msa0380290 | 0.806206 | 9.206525e-50 | -8.615850e-47 |
| Msa0380290 | Msa0387030 | 0.820219 | 7.700432e-53 | -8.615850e-47 |
| Msa0380290 | Msa0433050 | 0.807704 | 4.439226e-50 | -8.615850e-47 |
| Msa0380290 | Msa0480900 | -0.827157 | 1.826626e-54 | -8.615850e-47 |
| Msa0380290 | Msa0482360 | 0.803424 | 3.509413e-49 | -8.615850e-47 |
| Msa0380290 | Msa0523970 | 0.818180 | 2.242638e-52 | -8.615850e-47 |
| Msa0380290 | Msa0524490 | 0.874519 | 6.339018e-68 | -8.615850e-47 |
| Msa0380290 | Msa0524670 | 0.805342 | 1.398104e-49 | -8.615850e-47 |
| Msa0380290 | Msa0563440 | 0.828603 | 8.201792e-55 | -8.615850e-47 |
| Msa0380290 | Msa0590620 | -0.828322 | 9.587648e-55 | -8.615850e-47 |
| Msa0380290 | Msa0626920 | 0.806806 | 6.876883e-50 | -8.615850e-47 |
| Msa0380290 | Msa0644340 | 0.804181 | 2.443643e-49 | -8.615850e-47 |
| Msa0380290 | Msa0742370 | -0.808351 | 3.232350e-50 | -8.615850e-47 |
| Msa0380290 | Msa0743370 | 0.801762 | 7.727646e-49 | -8.615850e-47 |
| Msa0380290 | Msa0752490 | -0.814859 | 1.243291e-51 | -8.615850e-47 |
| Msa0380290 | Msa0756670 | -0.816671 | 4.903971e-52 | -8.615850e-47 |
| Msa0380290 | Msa0779450 | -0.810966 | 8.863664e-51 | -8.615850e-47 |
| Msa0380290 | Msa0985980 | -0.810011 | 1.424844e-50 | -8.615850e-47 |
| Msa0380290 | Msa1026970 | 0.805770 | 1.136846e-49 | -8.615850e-47 |
| Msa0380290 | Msa1094810 | 0.822262 | 2.602652e-53 | -8.615850e-47 |
| Msa0380290 | Msa1111900 | 0.800534 | 1.378051e-48 | -8.615850e-47 |
| Msa0380290 | Msa1112210 | -0.805982 | 1.026174e-49 | -8.615850e-47 |
| Msa0380290 | Msa1146980 | 0.801557 | 8.510467e-49 | -8.615850e-47 |
| Msa0380290 | Msa1200060 | -0.800826 | 1.201323e-48 | -8.615850e-47 |
| Msa0380290 | Msa1200360 | 0.805122 | 1.554864e-49 | -8.615850e-47 |
| Msa0380290 | Msa1202470 | 0.805109 | 1.564328e-49 | -8.615850e-47 |
| Msa0380290 | Msa1219530 | -0.800362 | 1.493345e-48 | -8.615850e-47 |
| Msa0380290 | Msa1284020 | 0.804040 | 2.614870e-49 | -8.615850e-47 |
| Msa0380290 | Msa1331570 | -0.835398 | 1.717722e-56 | -8.615850e-47 |
| Msa0380290 | Msa1360070 | -0.806338 | 8.633539e-50 | -8.615850e-47 |
| Msa0380290 | Msa1367580 | 0.889077 | 3.344059e-73 | -8.615850e-47 |
| Msa0380290 | Msa1409360 | -0.801261 | 9.785459e-49 | -8.615850e-47 |
| Msa0380290 | Msa1452230 | -0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0294200 | Msa0380290 | 0.807562 | 4.756981e-50 | -8.615850e-47 |
| Msa0303900 | Msa0380290 | 0.803966 | 2.708050e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380290 | MtrunA17_Chr3g0145751 | 91.275 | 149 | 3 | 3 | 1 | 149 | 1 | 139 | 8.70e-93 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380290 | AT3G07580.1 | 39.865 | 148 | 66 | 9 | 29 | 174 | 10 | 136 | 1.23e-19 | 80.9 |
| Msa0380290 | AT3G07580.2 | 41.935 | 124 | 49 | 9 | 29 | 150 | 10 | 112 | 1.41e-15 | 70.1 |
| Msa0380290 | AT5G48335.1 | 43.443 | 122 | 43 | 5 | 28 | 148 | 18 | 114 | 6.64e-15 | 67.8 |
Find 60 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCACAGCTTGACTTTC+TGG | 0.027355 | 3_1:+81973412 | Msa0380290:CDS |
| TGCATTAGGACTTATATTTA+AGG | 0.141077 | 3_1:+81973685 | Msa0380290:three_prime_UTR |
| CTTTCTCTTTCTGCTTCTGC+TGG | 0.246256 | 3_1:+81970735 | Msa0380290:five_prime_UTR |
| CAATGAATCTTCTTGAATAA+TGG | 0.279902 | 3_1:-81971927 | None:intergenic |
| CCACTAACCAGATGAATCTT+TGG | 0.290343 | 3_1:-81972447 | None:intergenic |
| AGAAGATTCATTGCTTTAGA+AGG | 0.326176 | 3_1:+81971937 | Msa0380290:CDS |
| TGAATCTTTGGGATTGTTGT+AGG | 0.326660 | 3_1:-81972435 | None:intergenic |
| GGAACCGTTCTATCAATAAT+AGG | 0.344648 | 3_1:+81970939 | Msa0380290:CDS |
| GATAGAACGGTTCCTTTGAT+TGG | 0.354075 | 3_1:-81970930 | None:intergenic |
| GAATTGCAATATCTTGCATT+AGG | 0.362070 | 3_1:+81973671 | Msa0380290:three_prime_UTR |
| GTGTCACAGCTTGACTTTCT+GGG | 0.362844 | 3_1:+81973413 | Msa0380290:CDS |
| TAGGATTGGCACTGTGCATT+TGG | 0.363887 | 3_1:-81973448 | None:intergenic |
| ATTCTGGTGGGACCTCAGTT+TGG | 0.371991 | 3_1:+81973208 | Msa0380290:CDS |
| CAAGCTCAGCCACCGGAATC+TGG | 0.379086 | 3_1:+81970875 | Msa0380290:CDS |
| CGAAGTTACAAAATCACAAA+TGG | 0.387457 | 3_1:-81973584 | None:intergenic |
| CACTAACCAGATGAATCTTT+GGG | 0.397232 | 3_1:-81972446 | None:intergenic |
| ATAGAACGGTTCCTTTGATT+GGG | 0.430840 | 3_1:-81970929 | None:intergenic |
| TTTCTCTTTCTGCTTCTGCT+GGG | 0.448802 | 3_1:+81970736 | Msa0380290:five_prime_UTR |
| AAGAAGAGACTGAGAGTCAG+AGG | 0.454007 | 3_1:+81970809 | Msa0380290:five_prime_UTR |
| GTCCCACCAGAATACATAAC+TGG | 0.456812 | 3_1:-81973198 | None:intergenic |
| GAAAATAAGGACAAAATAGT+TGG | 0.469040 | 3_1:-81973827 | None:intergenic |
| TCAGTTCAGACTCCCTCATC+AGG | 0.470456 | 3_1:+81973233 | Msa0380290:CDS |
| AACAATCCCAAAGATTCATC+TGG | 0.471111 | 3_1:+81972440 | Msa0380290:CDS |
| ACAAATGGGTAGTCAAGTAA+AGG | 0.483918 | 3_1:-81973569 | None:intergenic |
| TAAATAAAGCTTACCTGATG+AGG | 0.484449 | 3_1:-81973246 | None:intergenic |
| GAAGAGGAAGCACTCGCAGC+TGG | 0.484647 | 3_1:-81973389 | None:intergenic |
| CAAATGGGTAGTCAAGTAAA+GGG | 0.492979 | 3_1:-81973568 | None:intergenic |
| ACCACCACAGGACCAGATTC+CGG | 0.497624 | 3_1:-81970887 | None:intergenic |
| AATAGGCGGAAATCATCATC+TGG | 0.506410 | 3_1:+81970956 | Msa0380290:CDS |
| ACTCACGATCACTAAGAAGC+TGG | 0.511171 | 3_1:-81971981 | None:intergenic |
| TCCGCCTATTATTGATAGAA+CGG | 0.520342 | 3_1:-81970943 | None:intergenic |
| ATCCATCATGTGCTGAAACT+AGG | 0.524448 | 3_1:-81973467 | None:intergenic |
| GAAGTTACAAAATCACAAAT+GGG | 0.528232 | 3_1:-81973583 | None:intergenic |
| TGAGCTTGAGCTTGAGCGTG+AGG | 0.528242 | 3_1:-81970848 | None:intergenic |
| ACAAAATAGTTGGTTCATGT+AGG | 0.539542 | 3_1:-81973817 | None:intergenic |
| AACATTCAAGTTACAGATCA+CGG | 0.540516 | 3_1:+81971871 | Msa0380290:CDS |
| TAGCGCTTCACCACCACCAC+AGG | 0.546744 | 3_1:-81970899 | None:intergenic |
| ATCCTAGTTTCAGCACATGA+TGG | 0.552536 | 3_1:+81973465 | Msa0380290:CDS |
| AAATAAAGCTTACCTGATGA+GGG | 0.555627 | 3_1:-81973245 | None:intergenic |
| TCATGTGCTGAAACTAGGAT+TGG | 0.568680 | 3_1:-81973462 | None:intergenic |
| GTCAAGCTGTGACACAGAAG+AGG | 0.569534 | 3_1:-81973405 | None:intergenic |
| TCAAGCTCAAGCTCAGCCAC+CGG | 0.571954 | 3_1:+81970868 | Msa0380290:CDS |
| GGAATCTGGTCCTGTGGTGG+TGG | 0.575807 | 3_1:+81970889 | Msa0380290:CDS |
| CTTGATCGATCAAACAGTGT+TGG | 0.579556 | 3_1:+81971811 | Msa0380290:CDS |
| TAGTTTCAGCACATGATGGA+TGG | 0.583477 | 3_1:+81973469 | Msa0380290:exon |
| GCTATGCTCCGCCCAATCAA+AGG | 0.584395 | 3_1:+81970918 | Msa0380290:CDS |
| CTCACGATCACTAAGAAGCT+GGG | 0.587411 | 3_1:-81971980 | None:intergenic |
| GAACGGTTCCTTTGATTGGG+CGG | 0.595000 | 3_1:-81970926 | None:intergenic |
| GCCACCGGAATCTGGTCCTG+TGG | 0.595031 | 3_1:+81970883 | Msa0380290:CDS |
| AATATGTGTGACGCCTGTGT+TGG | 0.597731 | 3_1:+81973645 | Msa0380290:three_prime_UTR |
| AAACCAGTTATGTATTCTGG+TGG | 0.598244 | 3_1:+81973195 | Msa0380290:CDS |
| GAGCTTGAGCTTGAGCGTGA+GGG | 0.601515 | 3_1:-81970847 | None:intergenic |
| TCAGCACATGATGGATGGCA+TGG | 0.602398 | 3_1:+81973474 | Msa0380290:exon |
| ACCGGAATCTGGTCCTGTGG+TGG | 0.616133 | 3_1:+81970886 | Msa0380290:CDS |
| ATTGCAATTCACACCAACAC+AGG | 0.628897 | 3_1:-81973658 | None:intergenic |
| AGAAGAGACTGAGAGTCAGA+GGG | 0.632966 | 3_1:+81970810 | Msa0380290:five_prime_UTR |
| AACCAGTTATGTATTCTGGT+GGG | 0.640003 | 3_1:+81973196 | Msa0380290:CDS |
| ACCGTTCTATCAATAATAGG+CGG | 0.659459 | 3_1:+81970942 | Msa0380290:CDS |
| ACCACAGGACCAGATTCCGG+TGG | 0.684814 | 3_1:-81970884 | None:intergenic |
| TCTGAACTGAGTCCAAACTG+AGG | 0.739116 | 3_1:-81973220 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAATAAATAAAGCAT+CGG | - | chr3_1:81971126-81971145 | None:intergenic | 10.0% |
| !! | ACAAACAAAAAAAAAAAAAA+AGG | - | chr3_1:81971649-81971668 | None:intergenic | 10.0% |
| !! | ACAAAAAACAAAAAAAAAAA+AGG | - | chr3_1:81972646-81972665 | None:intergenic | 10.0% |
| !! | AGTAAAGAATTAAAGAAAAA+AGG | - | chr3_1:81971010-81971029 | None:intergenic | 15.0% |
| !! | AACAATAATAGTAATATGTT+TGG | - | chr3_1:81971082-81971101 | None:intergenic | 15.0% |
| !! | AACAAAAAAAAAAAAAAAGG+AGG | - | chr3_1:81971646-81971665 | None:intergenic | 15.0% |
| !!! | TTACATTGATTGAAGTAAAA+AGG | - | chr3_1:81971280-81971299 | None:intergenic | 20.0% |
| !! | TAATGTATCATCCTAAATAA+TGG | + | chr3_1:81971297-81971316 | Msa0380290:intron | 20.0% |
| !! | TTATGTGCCTATAATTTATA+GGG | - | chr3_1:81971348-81971367 | None:intergenic | 20.0% |
| !! | TTCTATCAAATTATGTAGAT+CGG | + | chr3_1:81971788-81971807 | Msa0380290:intron | 20.0% |
| !!! | TTTTTTGTTTTTTGTGTGTT+TGG | + | chr3_1:81972651-81972670 | Msa0380290:intron | 20.0% |
| !!! | TTACTTTTTAATCATCTTTG+TGG | + | chr3_1:81972968-81972987 | Msa0380290:intron | 20.0% |
| !! | ATAAATAATATACGCTCAAA+TGG | - | chr3_1:81973042-81973061 | None:intergenic | 20.0% |
| !! | TTGAGCGTATATTATTTATA+CGG | + | chr3_1:81973043-81973062 | Msa0380290:intron | 20.0% |
| !! | AAGATCATGTTAGATTTAAA+AGG | - | chr3_1:81973338-81973357 | None:intergenic | 20.0% |
| !!! | GTTTTGATAATTTAAATGCA+TGG | + | chr3_1:81973745-81973764 | Msa0380290:three_prime_UTR | 20.0% |
| ! | GAAATGAATTAGTTAGTTAG+AGG | - | chr3_1:81971200-81971219 | None:intergenic | 25.0% |
| ! | AGATAGAATTAGAGTTAGTT+GGG | - | chr3_1:81971242-81971261 | None:intergenic | 25.0% |
| ! | AAGATAGAATTAGAGTTAGT+TGG | - | chr3_1:81971243-81971262 | None:intergenic | 25.0% |
| !! | TATCATCCTAAATAATGGAA+CGG | + | chr3_1:81971302-81971321 | Msa0380290:intron | 25.0% |
| ! | CTTATGTGCCTATAATTTAT+AGG | - | chr3_1:81971349-81971368 | None:intergenic | 25.0% |
| !!! | GAACTATTAGTTTGTATTGT+TGG | + | chr3_1:81971382-81971401 | Msa0380290:intron | 25.0% |
| ! | CAATGAATCTTCTTGAATAA+TGG | - | chr3_1:81971930-81971949 | None:intergenic | 25.0% |
| !! | TGTCTAATATTTAGTGTTGA+TGG | + | chr3_1:81972516-81972535 | Msa0380290:intron | 25.0% |
| !!! | GAATCATTTCATAGTTTTAC+TGG | - | chr3_1:81972597-81972616 | None:intergenic | 25.0% |
| ! | TAGTCAATTAAAGAAAGAAC+TGG | - | chr3_1:81972680-81972699 | None:intergenic | 25.0% |
| ! | TTGACTAATTACTATAAGCT+TGG | + | chr3_1:81972693-81972712 | Msa0380290:intron | 25.0% |
| !!! | AAGGAACAACATATTTTAGT+TGG | - | chr3_1:81972795-81972814 | None:intergenic | 25.0% |
| ! | AAACACTAATGAACTGTATA+AGG | - | chr3_1:81972814-81972833 | None:intergenic | 25.0% |
| ! | TATAGTTTCTAAATTGCTGT+TGG | + | chr3_1:81973002-81973021 | Msa0380290:intron | 25.0% |
| !! | ATAGTTTCTAAATTGCTGTT+GGG | + | chr3_1:81973003-81973022 | Msa0380290:intron | 25.0% |
| ! | GAAGTTACAAAATCACAAAT+GGG | - | chr3_1:81973586-81973605 | None:intergenic | 25.0% |
| !! | CATTTGTGATTTTGTAACTT+CGG | + | chr3_1:81973585-81973604 | Msa0380290:three_prime_UTR | 25.0% |
| ! | TGCATTAGGACTTATATTTA+AGG | + | chr3_1:81973685-81973704 | Msa0380290:three_prime_UTR | 25.0% |
| !! | TAATAAATAAAGCATCGGAC+AGG | - | chr3_1:81971121-81971140 | None:intergenic | 30.0% |
| AGTTAGAGGAAAGCAAATAA+GGG | - | chr3_1:81971186-81971205 | None:intergenic | 30.0% | |
| TAGTTAGAGGAAAGCAAATA+AGG | - | chr3_1:81971187-81971206 | None:intergenic | 30.0% | |
| ACATATTGGTATTCAACTCA+AGG | - | chr3_1:81971466-81971485 | None:intergenic | 30.0% | |
| ! | TGAGTTGAATACCAATATGT+TGG | + | chr3_1:81971466-81971485 | Msa0380290:intron | 30.0% |
| ! | GAACTTTTACATAGATCTGA+TGG | - | chr3_1:81971574-81971593 | None:intergenic | 30.0% |
| AGAAACAAACAAAATAGAGC+AGG | - | chr3_1:81971747-81971766 | None:intergenic | 30.0% | |
| ! | AACATTCAAGTTACAGATCA+CGG | + | chr3_1:81971871-81971890 | Msa0380290:CDS | 30.0% |
| ! | AGAAGATTCATTGCTTTAGA+AGG | + | chr3_1:81971937-81971956 | Msa0380290:CDS | 30.0% |
| TACAAGTTCTCACAAACAAA+AGG | - | chr3_1:81972015-81972034 | None:intergenic | 30.0% | |
| TTGTGAGAACTTGTATATGT+TGG | + | chr3_1:81972020-81972039 | Msa0380290:intron | 30.0% | |
| AAGAACTACAGAAATCATCA+GGG | - | chr3_1:81972075-81972094 | None:intergenic | 30.0% | |
| AAAGAACTACAGAAATCATC+AGG | - | chr3_1:81972076-81972095 | None:intergenic | 30.0% | |
| GATGATTTCTGTAGTTCTTT+AGG | + | chr3_1:81972076-81972095 | Msa0380290:intron | 30.0% | |
| !! | TACCTTCAATTAGTTTGCAT+AGG | + | chr3_1:81972145-81972164 | Msa0380290:intron | 30.0% |
| ATCCTATGCAAACTAATTGA+AGG | - | chr3_1:81972150-81972169 | None:intergenic | 30.0% | |
| ! | GATTGAGATATGCAGATTTT+AGG | + | chr3_1:81972167-81972186 | Msa0380290:intron | 30.0% |
| !!! | ATATGCAGATTTTAGGACTT+AGG | + | chr3_1:81972174-81972193 | Msa0380290:intron | 30.0% |
| GGAACAATTAACGAAACAAA+AGG | - | chr3_1:81972255-81972274 | None:intergenic | 30.0% | |
| CAGTTAAAATACGAAAAGAC+AGG | - | chr3_1:81972276-81972295 | None:intergenic | 30.0% | |
| CAACAGGTAATGTTAATCAA+TGG | - | chr3_1:81972373-81972392 | None:intergenic | 30.0% | |
| CAAATTTCATAGCATGGAAA+AGG | - | chr3_1:81972492-81972511 | None:intergenic | 30.0% | |
| ATACAGTTCATTAGTGTTTG+AGG | + | chr3_1:81972815-81972834 | Msa0380290:intron | 30.0% | |
| TGAACTACATCAAAACACTT+TGG | - | chr3_1:81972908-81972927 | None:intergenic | 30.0% | |
| TACTATCACCACATTTAAGA+AGG | - | chr3_1:81973092-81973111 | None:intergenic | 30.0% | |
| TATGTGCTACATATACTCTT+AGG | + | chr3_1:81973115-81973134 | Msa0380290:intron | 30.0% | |
| !!! | GTTTTTCTGAAATTCGAAAG+AGG | - | chr3_1:81973179-81973198 | None:intergenic | 30.0% |
| GAAAAACCAGTTATGTATTC+TGG | + | chr3_1:81973192-81973211 | Msa0380290:intron | 30.0% | |
| AAATAAAGCTTACCTGATGA+GGG | - | chr3_1:81973248-81973267 | None:intergenic | 30.0% | |
| TAAATAAAGCTTACCTGATG+AGG | - | chr3_1:81973249-81973268 | None:intergenic | 30.0% | |
| GTTAGATTTAAAAGGCAGAA+GGG | - | chr3_1:81973330-81973349 | None:intergenic | 30.0% | |
| TGTTAGATTTAAAAGGCAGA+AGG | - | chr3_1:81973331-81973350 | None:intergenic | 30.0% | |
| CGAAGTTACAAAATCACAAA+TGG | - | chr3_1:81973587-81973606 | None:intergenic | 30.0% | |
| GAATTGCAATATCTTGCATT+AGG | + | chr3_1:81973671-81973690 | Msa0380290:three_prime_UTR | 30.0% | |
| ! | ACAAAATAGTTGGTTCATGT+AGG | - | chr3_1:81973820-81973839 | None:intergenic | 30.0% |
| ATAGAACGGTTCCTTTGATT+GGG | - | chr3_1:81970932-81970951 | None:intergenic | 35.0% | |
| GGAACCGTTCTATCAATAAT+AGG | + | chr3_1:81970939-81970958 | Msa0380290:CDS | 35.0% | |
| ACCGTTCTATCAATAATAGG+CGG | + | chr3_1:81970942-81970961 | Msa0380290:CDS | 35.0% | |
| TCCGCCTATTATTGATAGAA+CGG | - | chr3_1:81970946-81970965 | None:intergenic | 35.0% | |
| ! | CTAAATAATGGAACGGATCT+GGG | + | chr3_1:81971309-81971328 | Msa0380290:intron | 35.0% |
| ACTGGGACCCTATAAATTAT+AGG | + | chr3_1:81971338-81971357 | Msa0380290:intron | 35.0% | |
| AGTTTGTATTGTTGGATCAG+TGG | + | chr3_1:81971390-81971409 | Msa0380290:intron | 35.0% | |
| TTAACTCACGATAACAGTGT+TGG | + | chr3_1:81971433-81971452 | Msa0380290:intron | 35.0% | |
| CTGCTTATTGCATTATAGTG+AGG | + | chr3_1:81972293-81972312 | Msa0380290:intron | 35.0% | |
| TATTGCATTATAGTGAGGAG+TGG | + | chr3_1:81972298-81972317 | Msa0380290:intron | 35.0% | |
| ATTGCATTATAGTGAGGAGT+GGG | + | chr3_1:81972299-81972318 | Msa0380290:intron | 35.0% | |
| !! | TGAATCTTTGGGATTGTTGT+AGG | - | chr3_1:81972438-81972457 | None:intergenic | 35.0% |
| AACAATCCCAAAGATTCATC+TGG | + | chr3_1:81972440-81972459 | Msa0380290:CDS | 35.0% | |
| CACTAACCAGATGAATCTTT+GGG | - | chr3_1:81972449-81972468 | None:intergenic | 35.0% | |
| CAGTGACAAATTTCATAGCA+TGG | - | chr3_1:81972498-81972517 | None:intergenic | 35.0% | |
| !! | GTTTTCAATCCATTGAGTTG+AGG | + | chr3_1:81972568-81972587 | Msa0380290:intron | 35.0% |
| ATTGCGATACTTACGACTTA+CGG | + | chr3_1:81972750-81972769 | Msa0380290:intron | 35.0% | |
| TATCACCACATTTAAGAAGG+CGG | - | chr3_1:81973089-81973108 | None:intergenic | 35.0% | |
| !! | TTCTGAAATTCGAAAGAGGT+AGG | - | chr3_1:81973175-81973194 | None:intergenic | 35.0% |
| AAACCAGTTATGTATTCTGG+TGG | + | chr3_1:81973195-81973214 | Msa0380290:CDS | 35.0% | |
| AACCAGTTATGTATTCTGGT+GGG | + | chr3_1:81973196-81973215 | Msa0380290:CDS | 35.0% | |
| CAAATGGGTAGTCAAGTAAA+GGG | - | chr3_1:81973571-81973590 | None:intergenic | 35.0% | |
| ACAAATGGGTAGTCAAGTAA+AGG | - | chr3_1:81973572-81973591 | None:intergenic | 35.0% | |
| TTTCTCTTTCTGCTTCTGCT+GGG | + | chr3_1:81970736-81970755 | Msa0380290:five_prime_UTR | 40.0% | |
| ! | TCTCTCTCTCTCTCTAAGAA+AGG | + | chr3_1:81970786-81970805 | Msa0380290:five_prime_UTR | 40.0% |
| GATAGAACGGTTCCTTTGAT+TGG | - | chr3_1:81970933-81970952 | None:intergenic | 40.0% | |
| AATAGGCGGAAATCATCATC+TGG | + | chr3_1:81970956-81970975 | Msa0380290:CDS | 40.0% | |
| CCAGATCCGTTCCATTATTT+AGG | - | chr3_1:81971311-81971330 | None:intergenic | 40.0% | |
| ! | CCTAAATAATGGAACGGATC+TGG | + | chr3_1:81971308-81971327 | Msa0380290:intron | 40.0% |
| GAGTTAATATGTGCCTTGGT+TGG | - | chr3_1:81971420-81971439 | None:intergenic | 40.0% | |
| TCGTGAGTTAATATGTGCCT+TGG | - | chr3_1:81971424-81971443 | None:intergenic | 40.0% | |
| GAAGGCTAAAGCCAACATAT+TGG | - | chr3_1:81971480-81971499 | None:intergenic | 40.0% | |
| ATTTATCTCCCATGAGACCA+TGG | - | chr3_1:81971509-81971528 | None:intergenic | 40.0% | |
| GCATAATTCACAGTGAGCAA+TGG | + | chr3_1:81971692-81971711 | Msa0380290:intron | 40.0% | |
| CTTGATCGATCAAACAGTGT+TGG | + | chr3_1:81971811-81971830 | Msa0380290:CDS | 40.0% | |
| GTTCTCACAAACAAAAGGCA+GGG | - | chr3_1:81972010-81972029 | None:intergenic | 40.0% | |
| AGTTCTCACAAACAAAAGGC+AGG | - | chr3_1:81972011-81972030 | None:intergenic | 40.0% | |
| TTGCATTATAGTGAGGAGTG+GGG | + | chr3_1:81972300-81972319 | Msa0380290:intron | 40.0% | |
| TTAACATTACCTGTTGCCCA+TGG | + | chr3_1:81972377-81972396 | Msa0380290:intron | 40.0% | |
| CCACTAACCAGATGAATCTT+TGG | - | chr3_1:81972450-81972469 | None:intergenic | 40.0% | |
| CCAAAGATTCATCTGGTTAG+TGG | + | chr3_1:81972447-81972466 | Msa0380290:intron | 40.0% | |
| AAGGTCAATTACTGCAACAG+TGG | - | chr3_1:81972627-81972646 | None:intergenic | 40.0% | |
| TTGCGATACTTACGACTTAC+GGG | + | chr3_1:81972751-81972770 | Msa0380290:intron | 40.0% | |
| TTGATGTAGTTCAAGCTGAG+AGG | + | chr3_1:81972915-81972934 | Msa0380290:intron | 40.0% | |
| AATAGCCGCCTTCTTAAATG+TGG | + | chr3_1:81973081-81973100 | Msa0380290:intron | 40.0% | |
| ATTTAAAAGGCAGAAGGGAG+GGG | - | chr3_1:81973325-81973344 | None:intergenic | 40.0% | |
| GATTTAAAAGGCAGAAGGGA+GGG | - | chr3_1:81973326-81973345 | None:intergenic | 40.0% | |
| AGATTTAAAAGGCAGAAGGG+AGG | - | chr3_1:81973327-81973346 | None:intergenic | 40.0% | |
| TCATGTGCTGAAACTAGGAT+TGG | - | chr3_1:81973465-81973484 | None:intergenic | 40.0% | |
| ATCCTAGTTTCAGCACATGA+TGG | + | chr3_1:81973465-81973484 | Msa0380290:CDS | 40.0% | |
| ATCCATCATGTGCTGAAACT+AGG | - | chr3_1:81973470-81973489 | None:intergenic | 40.0% | |
| ! | TAGTTTCAGCACATGATGGA+TGG | + | chr3_1:81973469-81973488 | Msa0380290:exon | 40.0% |
| ATTGCAATTCACACCAACAC+AGG | - | chr3_1:81973661-81973680 | None:intergenic | 40.0% | |
| CTTTCTCTTTCTGCTTCTGC+TGG | + | chr3_1:81970735-81970754 | Msa0380290:five_prime_UTR | 45.0% | |
| AAGAAGAGACTGAGAGTCAG+AGG | + | chr3_1:81970809-81970828 | Msa0380290:five_prime_UTR | 45.0% | |
| AGAAGAGACTGAGAGTCAGA+GGG | + | chr3_1:81970810-81970829 | Msa0380290:five_prime_UTR | 45.0% | |
| ! | CTTTAGCCTTCTATCTGCCA+TGG | + | chr3_1:81971489-81971508 | Msa0380290:intron | 45.0% |
| ATGAGACCATGGCAGATAGA+AGG | - | chr3_1:81971498-81971517 | None:intergenic | 45.0% | |
| TTCTATCTGCCATGGTCTCA+TGG | + | chr3_1:81971497-81971516 | Msa0380290:intron | 45.0% | |
| TCTATCTGCCATGGTCTCAT+GGG | + | chr3_1:81971498-81971517 | Msa0380290:intron | 45.0% | |
| CTTGTAGCTCTTGATGCAAG+TGG | + | chr3_1:81971613-81971632 | Msa0380290:intron | 45.0% | |
| ! | GTGAGCAATGGCAAAGCTTT+TGG | + | chr3_1:81971704-81971723 | Msa0380290:intron | 45.0% |
| AGCAGGAACTGACAGCAAAT+GGG | - | chr3_1:81971730-81971749 | None:intergenic | 45.0% | |
| CTCACGATCACTAAGAAGCT+GGG | - | chr3_1:81971983-81972002 | None:intergenic | 45.0% | |
| ACTCACGATCACTAAGAAGC+TGG | - | chr3_1:81971984-81972003 | None:intergenic | 45.0% | |
| TGCATTATAGTGAGGAGTGG+GGG | + | chr3_1:81972301-81972320 | Msa0380290:intron | 45.0% | |
| ACCTGGAAACAGAAGTCCAT+GGG | - | chr3_1:81972396-81972415 | None:intergenic | 45.0% | |
| AACCTGGAAACAGAAGTCCA+TGG | - | chr3_1:81972397-81972416 | None:intergenic | 45.0% | |
| ATGGACTTCTGTTTCCAGGT+TGG | + | chr3_1:81972396-81972415 | Msa0380290:intron | 45.0% | |
| TGTATTACAGCTGTCCAACC+TGG | - | chr3_1:81972413-81972432 | None:intergenic | 45.0% | |
| TACTGGTGACCTCAACTCAA+TGG | - | chr3_1:81972580-81972599 | None:intergenic | 45.0% | |
| ACTTACGACTTACGGGAGTT+TGG | + | chr3_1:81972758-81972777 | Msa0380290:intron | 45.0% | |
| GTCCCACCAGAATACATAAC+TGG | - | chr3_1:81973201-81973220 | None:intergenic | 45.0% | |
| TCTGAACTGAGTCCAAACTG+AGG | - | chr3_1:81973223-81973242 | None:intergenic | 45.0% | |
| TGTGTCACAGCTTGACTTTC+TGG | + | chr3_1:81973412-81973431 | Msa0380290:CDS | 45.0% | |
| GTGTCACAGCTTGACTTTCT+GGG | + | chr3_1:81973413-81973432 | Msa0380290:CDS | 45.0% | |
| ! | TAGGATTGGCACTGTGCATT+TGG | - | chr3_1:81973451-81973470 | None:intergenic | 45.0% |
| AATATGTGTGACGCCTGTGT+TGG | + | chr3_1:81973645-81973664 | Msa0380290:three_prime_UTR | 45.0% | |
| GAACGGTTCCTTTGATTGGG+CGG | - | chr3_1:81970929-81970948 | None:intergenic | 50.0% | |
| ! | TAATGGAACGGATCTGGGAC+TGG | + | chr3_1:81971314-81971333 | Msa0380290:intron | 50.0% |
| ! | AATGGAACGGATCTGGGACT+GGG | + | chr3_1:81971315-81971334 | Msa0380290:intron | 50.0% |
| GATCAGTGGATGTCCAACCA+AGG | + | chr3_1:81971404-81971423 | Msa0380290:intron | 50.0% | |
| GAGCAGGAACTGACAGCAAA+TGG | - | chr3_1:81971731-81971750 | None:intergenic | 50.0% | |
| AACAGAAGTCCATGGGCAAC+AGG | - | chr3_1:81972389-81972408 | None:intergenic | 50.0% | |
| ATTCTGGTGGGACCTCAGTT+TGG | + | chr3_1:81973208-81973227 | Msa0380290:CDS | 50.0% | |
| TCAGTTCAGACTCCCTCATC+AGG | + | chr3_1:81973233-81973252 | Msa0380290:CDS | 50.0% | |
| CAGCTGGTGACATAATCTGG+GGG | - | chr3_1:81973376-81973395 | None:intergenic | 50.0% | |
| GCAGCTGGTGACATAATCTG+GGG | - | chr3_1:81973377-81973396 | None:intergenic | 50.0% | |
| CGCAGCTGGTGACATAATCT+GGG | - | chr3_1:81973378-81973397 | None:intergenic | 50.0% | |
| TCGCAGCTGGTGACATAATC+TGG | - | chr3_1:81973379-81973398 | None:intergenic | 50.0% | |
| GTCAAGCTGTGACACAGAAG+AGG | - | chr3_1:81973408-81973427 | None:intergenic | 50.0% | |
| !! | TCAGCACATGATGGATGGCA+TGG | + | chr3_1:81973474-81973493 | Msa0380290:exon | 50.0% |
| GAGCTTGAGCTTGAGCGTGA+GGG | - | chr3_1:81970850-81970869 | None:intergenic | 55.0% | |
| TGAGCTTGAGCTTGAGCGTG+AGG | - | chr3_1:81970851-81970870 | None:intergenic | 55.0% | |
| TCAAGCTCAAGCTCAGCCAC+CGG | + | chr3_1:81970868-81970887 | Msa0380290:CDS | 55.0% | |
| ACCACCACAGGACCAGATTC+CGG | - | chr3_1:81970890-81970909 | None:intergenic | 55.0% | |
| GCTATGCTCCGCCCAATCAA+AGG | + | chr3_1:81970918-81970937 | Msa0380290:CDS | 55.0% | |
| GCCCATGGACTTCTGTTTCC+AGG | + | chr3_1:81972392-81972411 | Msa0380290:intron | 55.0% | |
| AAAAGGCAGAAGGGAGGGGA+AGG | - | chr3_1:81973321-81973340 | None:intergenic | 55.0% | |
| CAAGCTCAGCCACCGGAATC+TGG | + | chr3_1:81970875-81970894 | Msa0380290:CDS | 60.0% | |
| ACCACAGGACCAGATTCCGG+TGG | - | chr3_1:81970887-81970906 | None:intergenic | 60.0% | |
| ACCGGAATCTGGTCCTGTGG+TGG | + | chr3_1:81970886-81970905 | Msa0380290:CDS | 60.0% | |
| GGAATCTGGTCCTGTGGTGG+TGG | + | chr3_1:81970889-81970908 | Msa0380290:CDS | 60.0% | |
| TAGCGCTTCACCACCACCAC+AGG | - | chr3_1:81970902-81970921 | None:intergenic | 60.0% | |
| ! | AACGGATCTGGGACTGGGAC+TGG | + | chr3_1:81971320-81971339 | Msa0380290:intron | 60.0% |
| ! | ACGGATCTGGGACTGGGACT+GGG | + | chr3_1:81971321-81971340 | Msa0380290:intron | 60.0% |
| !! | GAAGAGGAAGCACTCGCAGC+TGG | - | chr3_1:81973392-81973411 | None:intergenic | 60.0% |
| GCCACCGGAATCTGGTCCTG+TGG | + | chr3_1:81970883-81970902 | Msa0380290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 81970716 | 81973844 | 81970716 | ID=Msa0380290;Name=Msa0380290 |
| chr3_1 | mRNA | 81970716 | 81973844 | 81970716 | ID=Msa0380290-mRNA-1;Parent=Msa0380290;Name=Msa0380290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117|1|1|1|1|1|5|360|183 |
| chr3_1 | exon | 81970716 | 81970977 | 81970716 | ID=Msa0380290-mRNA-1:exon:20829;Parent=Msa0380290-mRNA-1 |
| chr3_1 | exon | 81971806 | 81971997 | 81971806 | ID=Msa0380290-mRNA-1:exon:20830;Parent=Msa0380290-mRNA-1 |
| chr3_1 | exon | 81972414 | 81972461 | 81972414 | ID=Msa0380290-mRNA-1:exon:20831;Parent=Msa0380290-mRNA-1 |
| chr3_1 | exon | 81973193 | 81973254 | 81973193 | ID=Msa0380290-mRNA-1:exon:20832;Parent=Msa0380290-mRNA-1 |
| chr3_1 | exon | 81973380 | 81973844 | 81973380 | ID=Msa0380290-mRNA-1:exon:20833;Parent=Msa0380290-mRNA-1 |
| chr3_1 | five_prime_UTR | 81970716 | 81970832 | 81970716 | ID=Msa0380290-mRNA-1:five_prime_utr;Parent=Msa0380290-mRNA-1 |
| chr3_1 | CDS | 81970833 | 81970977 | 81970833 | ID=Msa0380290-mRNA-1:cds;Parent=Msa0380290-mRNA-1 |
| chr3_1 | CDS | 81971806 | 81971997 | 81971806 | ID=Msa0380290-mRNA-1:cds;Parent=Msa0380290-mRNA-1 |
| chr3_1 | CDS | 81972414 | 81972461 | 81972414 | ID=Msa0380290-mRNA-1:cds;Parent=Msa0380290-mRNA-1 |
| chr3_1 | CDS | 81973193 | 81973254 | 81973193 | ID=Msa0380290-mRNA-1:cds;Parent=Msa0380290-mRNA-1 |
| chr3_1 | CDS | 81973380 | 81973484 | 81973380 | ID=Msa0380290-mRNA-1:cds;Parent=Msa0380290-mRNA-1 |
| chr3_1 | three_prime_UTR | 81973485 | 81973844 | 81973485 | ID=Msa0380290-mRNA-1:three_prime_utr;Parent=Msa0380290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
