AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196210 MtrunA17_Chr8g0362571 91.043 681 34 4 1 656 1 679 0.0 1210
Msa1196210 MtrunA17_Chr7g0218861 54.819 166 50 2 515 656 562 726 6.01e-51 190
Msa1196210 MtrunA17_Chr1g0157251 36.810 163 74 4 519 656 43 201 5.15e-24 105
Msa1196210 MtrunA17_Chr1g0153391 34.337 166 78 3 522 656 25 190 1.48e-23 103
Msa1196210 MtrunA17_Chr1g0153411 32.738 168 79 4 522 656 25 191 5.09e-22 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196210 AT1G69830.1 57.190 612 214 9 69 655 66 654 0.0 683
Msa1196210 AT1G76130.2 33.742 163 79 4 519 656 24 182 3.57e-21 97.1
Msa1196210 AT1G76130.1 33.742 163 79 4 519 656 24 182 3.57e-21 97.1
Msa1196210 AT4G25000.1 33.735 166 79 3 522 656 27 192 2.58e-20 94.4

Find 164 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTTCATTGGGGAGTTTC+TGG 0.091608 8_1:-45008968 Msa1196210:CDS
GTAGCAAAAGTTTCAAATTT+TGG 0.135634 8_1:+45009801 None:intergenic
AAACTATTGTCTACCTTTAT+AGG 0.158801 8_1:+45008565 None:intergenic
GACTAACGAAAATGAGAATT+TGG 0.163307 8_1:+45004885 None:intergenic
CTCTTGGCTTTACTGTTATT+TGG 0.163991 8_1:-45006196 Msa1196210:intron
AAGGAGGATCCTAATTTAAT+TGG 0.183292 8_1:-45008157 Msa1196210:CDS
AATGGTTTCTTGAGCTTCTT+TGG 0.188878 8_1:+45006466 None:intergenic
AATGGTATTTGGAACATATT+TGG 0.190723 8_1:-45005575 Msa1196210:CDS
TAGTATGCCAAGGGTTTAAT+TGG 0.203351 8_1:-45006280 Msa1196210:CDS
GAAATAAGGCATTTGGTTAC+TGG 0.216838 8_1:-45006521 Msa1196210:CDS
GAGAGAGAGTGTGAAGAATT+TGG 0.220547 8_1:+45009897 None:intergenic
TTAACTATGGTTCTTGTTCT+TGG 0.227656 8_1:-45009857 Msa1196210:CDS
CATCGGTTGCTTCTGAATTC+AGG 0.242070 8_1:+45007505 None:intergenic
CTTCCCTTTCCACTTCCTTT+TGG 0.255177 8_1:+45006767 None:intergenic
ACAGTAACTTCCTTGGTTAA+AGG 0.278492 8_1:+45007402 None:intergenic
TATTTCATTGATTATTTCAT+TGG 0.290467 8_1:+45006538 None:intergenic
GGTGCAATCTACCAGGAAAT+TGG 0.294065 8_1:-45008991 Msa1196210:CDS
ATGAAATAATCAATGAAATA+AGG 0.296161 8_1:-45006535 Msa1196210:CDS
TGTGGAATCCGAGGTTGTTT+TGG 0.299314 8_1:-45006363 Msa1196210:CDS
ACTTCCGGTAGCTCAGTTAT+TGG 0.310168 8_1:-45006632 Msa1196210:CDS
ATTTGGCTTGAAACGGTTAA+TGG 0.313857 8_1:+45009914 None:intergenic
TTAAGATAAATGAAAATTCA+TGG 0.318297 8_1:-45006694 Msa1196210:CDS
CAGGAAATTGGATTCTTCAT+TGG 0.318347 8_1:-45008979 Msa1196210:CDS
AGGAAATTGGATTCTTCATT+GGG 0.341748 8_1:-45008978 Msa1196210:CDS
TATTTGGAGGTCGTCTCAAC+TGG 0.344947 8_1:-45005559 Msa1196210:CDS
TACGTCCCTCTCTCAACTTC+CGG 0.350003 8_1:-45006647 Msa1196210:CDS
AGTTTGGCGAACTCAATTAA+AGG 0.353674 8_1:-45007199 Msa1196210:intron
GTGAAAGAATTTCATAAAGT+TGG 0.354126 8_1:-45005656 Msa1196210:CDS
ACTTCCAATACTATTAACTA+TGG 0.356115 8_1:-45009870 Msa1196210:CDS
ATCAGAATAAGAATGGTATT+TGG 0.356883 8_1:-45005586 Msa1196210:CDS
AAGTTCAGCACAAATCTCTT+TGG 0.358310 8_1:-45006747 Msa1196210:CDS
GTTTCTGGTGTGGATGATAT+TGG 0.363105 8_1:-45008953 Msa1196210:CDS
AATCAATGAAATAAGGCATT+TGG 0.365401 8_1:-45006528 Msa1196210:CDS
AATTGGGAGTCTAATAAATC+TGG 0.367354 8_1:-45006263 Msa1196210:CDS
AAGAATGGTTATGCTGGTTA+AGG 0.367519 8_1:-45004916 Msa1196210:CDS
TCCTGGATCTATTCCTATAA+AGG 0.369975 8_1:-45008578 Msa1196210:intron
TACCAGTTCAATTCTGTTGA+TGG 0.381799 8_1:+45009716 None:intergenic
AATTTAATTGGACCTAAAAC+AGG 0.381891 8_1:-45008145 Msa1196210:CDS
AAGAATTCAGAGCTTATAGT+TGG 0.386894 8_1:-45009013 Msa1196210:CDS
TAGAGATGATTTAAGAAGTT+GGG 0.393078 8_1:-45007271 Msa1196210:CDS
TCCTCTGGTAAACTATCTTA+AGG 0.405222 8_1:-45008176 Msa1196210:CDS
AGTTCAGCACAAATCTCTTT+GGG 0.405517 8_1:-45006746 Msa1196210:CDS
ATCATGTCGGGAACAGGCAC+AGG 0.411759 8_1:-45006311 Msa1196210:CDS
TCTTTATATGCTACAGTTTG+TGG 0.420943 8_1:+45007225 None:intergenic
TGGAGGCAACTCAGGTGATT+CGG 0.422854 8_1:+45006337 None:intergenic
TGTAACATCTTCCTTGCAAA+AGG 0.423205 8_1:-45010033 Msa1196210:five_prime_UTR
TAGCATATAAAGACACAGTT+TGG 0.430766 8_1:-45007215 Msa1196210:CDS
TCTTTCAATTTCTTGAAGAA+TGG 0.430927 8_1:+45006448 None:intergenic
GTAGAGATGATTTAAGAAGT+TGG 0.433427 8_1:-45007272 Msa1196210:CDS
TCCTGTGAATGATCAATGTT+TGG 0.444598 8_1:+45004959 None:intergenic
CAATGAAGAATCCAATTTCC+TGG 0.444655 8_1:+45008980 None:intergenic
TCATAAAGAGTATCTCCTTC+CGG 0.451981 8_1:+45008420 None:intergenic
TCGATGCAGGACGAGGAAAC+TGG 0.453145 8_1:-45008235 Msa1196210:intron
TAGACTCCCAATTAAACCCT+TGG 0.463111 8_1:+45006273 None:intergenic
TCCCATCAACAGAATTGAAC+TGG 0.465937 8_1:-45009718 Msa1196210:intron
TGAGAAACGATATTAAAGAA+TGG 0.466017 8_1:-45004931 Msa1196210:CDS
AGAACCATAGTTAATAGTAT+TGG 0.469641 8_1:+45009866 None:intergenic
GAGATACTCTTTATGAAGTC+AGG 0.472117 8_1:-45008413 Msa1196210:CDS
GTGAAGAATTTGGCTTGAAA+CGG 0.474351 8_1:+45009907 None:intergenic
GTTATTGACAGTAACTTCCT+TGG 0.481501 8_1:+45007395 None:intergenic
AAGAGACTTCAAAGTTCCTC+TGG 0.481998 8_1:-45008191 Msa1196210:CDS
AGTATGCCAAGGGTTTAATT+GGG 0.484401 8_1:-45006279 Msa1196210:CDS
CCCCGTGATATGATACCTCC+TGG 0.484490 8_1:-45008595 Msa1196210:CDS
CTTTCTTCTATACAGGGGAG+GGG 0.484650 8_1:-45005016 Msa1196210:intron
AATCGCTGAAATCTCATCGC+TGG 0.484867 8_1:+45008377 None:intergenic
AGAGGTTCTGAAGATACTAT+AGG 0.486290 8_1:+45006412 None:intergenic
TCTTCAAGAAATTGAAAGAC+TGG 0.486638 8_1:-45006444 Msa1196210:CDS
CAGAAGATTGAATCTGTTGA+AGG 0.487387 8_1:+45009766 None:intergenic
ACCAGTTCAATTCTGTTGAT+GGG 0.490268 8_1:+45009717 None:intergenic
GCTAAAGAACTAGCATCTCT+TGG 0.494064 8_1:-45006212 Msa1196210:CDS
CTCTACAAACTCCCCAATGA+AGG 0.495764 8_1:+45007289 None:intergenic
TCAAGATAGCAACAGTGAAT+CGG 0.500297 8_1:-45007475 Msa1196210:CDS
TCCTCACTCATAGGGGACAT+AGG 0.502990 8_1:-45007546 Msa1196210:intron
CCTCACTCATAGGGGACATA+GGG 0.506379 8_1:-45007545 Msa1196210:intron
GTGTTTATAAGATTAGATCA+AGG 0.510606 8_1:-45009046 Msa1196210:CDS
CGATCTGTTATGTAGCCAAA+AGG 0.511112 8_1:-45006782 Msa1196210:intron
CTCGGAGAAAGCTGGAACAG+AGG 0.512519 8_1:+45006394 None:intergenic
CACAAACAAACCTGAAAATG+TGG 0.513742 8_1:+45005509 None:intergenic
ATGATAGGTGGTCGTGGTGA+TGG 0.513841 8_1:+45010008 None:intergenic
ATAGCTTCCTCGGAGAAAGC+TGG 0.514012 8_1:+45006386 None:intergenic
TCCAGGAGGTATCATATCAC+GGG 0.519553 8_1:+45008594 None:intergenic
TAGCCAAAAGGAAGTGGAAA+GGG 0.521578 8_1:-45006770 Msa1196210:CDS
ACTCTATCAGTGTCTCCGTT+AGG 0.521785 8_1:-45007374 Msa1196210:CDS
GGCAGTGAGATAGTTTGAAA+TGG 0.524772 8_1:+45009949 None:intergenic
AGCTAATACTAAGAAGCAAA+AGG 0.526972 8_1:-45010075 Msa1196210:five_prime_UTR
GTTATGTAGCCAAAAGGAAG+TGG 0.527882 8_1:-45006776 Msa1196210:intron
ATAGTTAATAGTATTGGAAG+TGG 0.528099 8_1:+45009872 None:intergenic
TAATCTGCAGGTGGAGGGAA+AGG 0.530804 8_1:-45009068 Msa1196210:intron
GGTATTTGGAACATATTTGG+AGG 0.534787 8_1:-45005572 Msa1196210:CDS
CACATCCTTCAGTTCATCAA+TGG 0.535296 8_1:+45005679 None:intergenic
ATATTAAAGAATGGTTATGC+TGG 0.535991 8_1:-45004922 Msa1196210:CDS
GCTATCTTGAACTTTGTCAT+CGG 0.536017 8_1:+45007488 None:intergenic
TTATATGCTACAGTTTGTGG+TGG 0.536406 8_1:+45007228 None:intergenic
GGATTCCACAATAGCTTCCT+CGG 0.538172 8_1:+45006376 None:intergenic
AGAATTCAGAGCTTATAGTT+GGG 0.539938 8_1:-45009012 Msa1196210:CDS
GTTTGTGGTGGATGAGGAGC+AGG 0.542061 8_1:+45007240 None:intergenic
TTTCTCCGAGGAAGCTATTG+TGG 0.544731 8_1:-45006381 Msa1196210:CDS
AAAGTTGGAATCAAAGTGCT+AGG 0.546749 8_1:-45005641 Msa1196210:CDS
AGTCTAATAAATCTGGAAGA+TGG 0.547837 8_1:-45006256 Msa1196210:CDS
ATCGCTGAAATCTCATCGCT+GGG 0.549931 8_1:+45008378 None:intergenic
TCCAAACATTGATCATTCAC+AGG 0.559398 8_1:-45004960 Msa1196210:CDS
TAAATCTGGAAGATGGTACA+TGG 0.559670 8_1:-45006249 Msa1196210:CDS
AAATTCATGGTTAAATAACA+AGG 0.562174 8_1:-45006681 Msa1196210:CDS
TGTTTATAAGATTAGATCAA+GGG 0.564271 8_1:-45009045 Msa1196210:CDS
GCTACAGTTTGTGGTGGATG+AGG 0.564756 8_1:+45007234 None:intergenic
ATCCAGGAGGTATCATATCA+CGG 0.565082 8_1:+45008593 None:intergenic
ACCTTTATAGGAATAGATCC+AGG 0.566563 8_1:+45008577 None:intergenic
GAAGAAATCATCATCATCAC+CGG 0.568649 8_1:-45008439 Msa1196210:CDS
GTTGCCAATAACTGAGCTAC+CGG 0.569553 8_1:+45006628 None:intergenic
TGTAGAACTGCCTTTAACCA+AGG 0.570430 8_1:-45007412 Msa1196210:CDS
CAACACAACACAACACAAGT+TGG 0.570438 8_1:-45010109 None:intergenic
GCTGAGCATCAGAATAAGAA+TGG 0.572411 8_1:-45005593 Msa1196210:CDS
ATAGTTGGGTGCAATCTACC+AGG 0.573646 8_1:-45008998 Msa1196210:CDS
ACTCTTTATGAAGTCAGGAT+CGG 0.574850 8_1:-45008408 Msa1196210:CDS
CAATGAAGGAAAATATCACC+TGG 0.578377 8_1:+45007303 None:intergenic
GGGTATGAAATAGTATGCCA+AGG 0.581724 8_1:-45006290 Msa1196210:CDS
AAATATAATCTGCAGGTGGA+GGG 0.585441 8_1:-45009073 Msa1196210:intron
GAGTGAAGAGGCAGGCGAAG+AGG 0.586230 8_1:-45006579 Msa1196210:CDS
GAAAGTTGTAAAGAGTGAAG+AGG 0.588257 8_1:-45006591 Msa1196210:CDS
GTTGTAAAGAGTGAAGAGGC+AGG 0.590094 8_1:-45006587 Msa1196210:CDS
TGTTTCTGAGCATTTCCTAA+CGG 0.590931 8_1:+45007359 None:intergenic
ACAGGCTTTAGTTTGTCCCA+AGG 0.592504 8_1:-45008127 Msa1196210:intron
GTAGCCAAAAGGAAGTGGAA+AGG 0.595926 8_1:-45006771 Msa1196210:intron
GATTTAGAAACGGATATACC+AGG 0.600340 8_1:-45007321 Msa1196210:CDS
GATAGTTTGAAATGGAAGAG+TGG 0.602677 8_1:+45009957 None:intergenic
GATCAATGTTTGGAGCCGCA+TGG 0.607937 8_1:+45004969 None:intergenic
AAGGAAAATAGTCAAGCAGA+AGG 0.609635 8_1:-45007441 Msa1196210:CDS
GTGGTGGAGATGCTCATGAT+AGG 0.610657 8_1:+45009993 None:intergenic
GGGAGGGGCAACAAGAGTAG+TGG 0.612121 8_1:-45005001 Msa1196210:CDS
ATTTGGAGGTCGTCTCAACT+GGG 0.613014 8_1:-45005558 Msa1196210:CDS
ATGCTCATGATAGGTGGTCG+TGG 0.617470 8_1:+45010002 None:intergenic
AGAAGATTGAATCTGTTGAA+GGG 0.618052 8_1:+45009767 None:intergenic
AGGACGAGGAAACTGGCACT+TGG 0.620719 8_1:-45008228 Msa1196210:CDS
TTCGGATTCCAAAACAACCT+CGG 0.621124 8_1:+45006355 None:intergenic
AGCTACCGGAAGTTGAGAGA+GGG 0.621352 8_1:+45006642 None:intergenic
TCCTTAAGATAGTTTACCAG+AGG 0.626240 8_1:+45008175 None:intergenic
TGGTACCATTGATGAACTGA+AGG 0.629503 8_1:-45005684 Msa1196210:CDS
TCATTGGGGAGTTTCTGGTG+TGG 0.629899 8_1:-45008963 Msa1196210:CDS
GGAGAGAGAAACTCATGGGG+TGG 0.633967 8_1:+45009822 None:intergenic
AATTCATGGTTAAATAACAA+GGG 0.635549 8_1:-45006680 Msa1196210:CDS
TGGTTCAGAGAAAACAGTGG+TGG 0.636081 8_1:+45009977 None:intergenic
GAAGATACTATAGGCTTCAG+CGG 0.639584 8_1:+45006421 None:intergenic
CTCTGTTCCAGCTTTCTCCG+AGG 0.640312 8_1:-45006393 Msa1196210:CDS
CATTGATGAACTGAAGGATG+TGG 0.641184 8_1:-45005678 Msa1196210:CDS
AAATCATCATCATCACCGGA+AGG 0.643044 8_1:-45008435 Msa1196210:CDS
GAGCTACCGGAAGTTGAGAG+AGG 0.643646 8_1:+45006641 None:intergenic
TGTGGTGGATGAGGAGCAGG+TGG 0.645049 8_1:+45007243 None:intergenic
ACAAACAAACCTGAAAATGT+GGG 0.647794 8_1:+45005510 None:intergenic
GGTATGAAATAGTATGCCAA+GGG 0.653817 8_1:-45006289 Msa1196210:CDS
TCTGGTAAACTATCTTAAGG+AGG 0.654888 8_1:-45008173 Msa1196210:CDS
GGAAGCTATTGTGGAATCCG+AGG 0.655431 8_1:-45006372 Msa1196210:CDS
CTGGTGTGGATGATATTGGA+AGG 0.663725 8_1:-45008949 Msa1196210:intron
GGAAATTGGATTCTTCATTG+GGG 0.663839 8_1:-45008977 Msa1196210:CDS
CTCAGTTATTGGCAACAGAG+AGG 0.668523 8_1:-45006621 Msa1196210:CDS
TCATGTCGGGAACAGGCACA+GGG 0.672922 8_1:-45006310 Msa1196210:CDS
GGTTAATGGTAGCTAATCTG+TGG 0.673415 8_1:+45009928 None:intergenic
GTGGAGATGCTCATGATAGG+TGG 0.684639 8_1:+45009996 None:intergenic
CCAGGAGGTATCATATCACG+GGG 0.685523 8_1:+45008595 None:intergenic
GGCACTTGGTATCAACACAA+AGG 0.687243 8_1:-45008214 Msa1196210:CDS
GGAGGTATCATATCACGGGG+TGG 0.712340 8_1:+45008598 None:intergenic
TTTGGAGAGAGAAACTCATG+GGG 0.732015 8_1:+45009819 None:intergenic
TAGTGGAGATAGTTTCCATG+CGG 0.748696 8_1:-45004984 Msa1196210:CDS
GAGTGGTTCAGAGAAAACAG+TGG 0.759302 8_1:+45009974 None:intergenic
TTTATAGGAATAGATCCAGG+AGG 0.764420 8_1:+45008580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTATATATCAAATTTT+TGG - chr8_1:45005294-45005313 Msa1196210:intron 10.0%
!!! AAAAATTATGATTTTTATAG+TGG - chr8_1:45005369-45005388 Msa1196210:intron 10.0%
!! GATTAAATAAATTGATTAAA+AGG + chr8_1:45007356-45007375 None:intergenic 10.0%
!! AATAGATAAATCTTATAATA+TGG - chr8_1:45007930-45007949 Msa1196210:intron 10.0%
!!! ATTTTACTTTTTTTTTTTAG+GGG + chr8_1:45008086-45008105 None:intergenic 10.0%
!! TTTGAATTATATATTAAGAT+TGG - chr8_1:45008141-45008160 Msa1196210:CDS 10.0%
!!! TATATATCAAATTTTTGGAT+TGG - chr8_1:45005299-45005318 Msa1196210:intron 15.0%
!!! AAATCATAATTTTTTCATCT+GGG + chr8_1:45005363-45005382 None:intergenic 15.0%
!!! AAAATCATAATTTTTTCATC+TGG + chr8_1:45005364-45005383 None:intergenic 15.0%
!! GAAATAGTAAAAATGTTAAA+GGG - chr8_1:45005391-45005410 Msa1196210:intron 15.0%
!!! AATTTTGTTTTGTATAAATG+TGG - chr8_1:45005461-45005480 Msa1196210:intron 15.0%
!!! ATCTACTTCTAAAATAAAAA+GGG + chr8_1:45005846-45005865 None:intergenic 15.0%
!!! TATCTACTTCTAAAATAAAA+AGG + chr8_1:45005847-45005866 None:intergenic 15.0%
!!! AGATTATATTAATTTGTAAC+AGG - chr8_1:45006252-45006271 Msa1196210:CDS 15.0%
!!! AAATATTTTGGATTTAGAAA+CGG - chr8_1:45007655-45007674 Msa1196210:intron 15.0%
!! AAATATAGAAAACGAAAAAA+CGG + chr8_1:45007820-45007839 None:intergenic 15.0%
!! TATTACGATTTAAATAAATG+CGG + chr8_1:45007914-45007933 None:intergenic 15.0%
!! TTAAGATAAATGAAAATTCA+TGG - chr8_1:45008292-45008311 Msa1196210:intron 15.0%
!!! TATTTCATTGATTATTTCAT+TGG + chr8_1:45008451-45008470 None:intergenic 15.0%
!! ATGAAATAATCAATGAAATA+AGG - chr8_1:45008451-45008470 Msa1196210:CDS 15.0%
!! TTTAAATTATATAAATCCCT+TGG + chr8_1:45008858-45008877 None:intergenic 15.0%
!!! CTACTTTTTAAAATTATTTC+CGG + chr8_1:45008984-45009003 None:intergenic 15.0%
!! GGAAATAGTAAAAATGTTAA+AGG - chr8_1:45005390-45005409 Msa1196210:intron 20.0%
!!! TTTGTGACTTTCTTTTTTAT+GGG + chr8_1:45005751-45005770 None:intergenic 20.0%
!! ATAAAAAGGGAAAATAAGTA+AGG + chr8_1:45005833-45005852 None:intergenic 20.0%
!!! GATAGATATATTTTAGTCTT+TGG - chr8_1:45005863-45005882 Msa1196210:intron 20.0%
!! TGTTTATAAGATTAGATCAA+GGG - chr8_1:45005941-45005960 Msa1196210:intron 20.0%
!! GAAAATAAAACCATGATATA+GGG + chr8_1:45006955-45006974 None:intergenic 20.0%
!! AGAAAATAAAACCATGATAT+AGG + chr8_1:45006956-45006975 None:intergenic 20.0%
!!! CATGGTTTTATTTTCTTTTA+TGG - chr8_1:45006960-45006979 Msa1196210:intron 20.0%
!!! CGATTTGAAATATAACAATA+TGG - chr8_1:45007172-45007191 Msa1196210:intron 20.0%
!! TTAAAATTCGAATTAATGTC+AGG + chr8_1:45007237-45007256 None:intergenic 20.0%
!!! AGAAACAGCTAAAAATATTT+TGG - chr8_1:45007643-45007662 Msa1196210:intron 20.0%
!! AAATTCATGGTTAAATAACA+AGG - chr8_1:45008305-45008324 Msa1196210:intron 20.0%
!! AATTCATGGTTAAATAACAA+GGG - chr8_1:45008306-45008325 Msa1196210:intron 20.0%
!! TGAAATAATGAGATCTTTAA+GGG + chr8_1:45008902-45008921 None:intergenic 20.0%
!! ATGAAATAATGAGATCTTTA+AGG + chr8_1:45008903-45008922 None:intergenic 20.0%
!!! TAACTGTTATTTTATATCTC+AGG - chr8_1:45009277-45009296 Msa1196210:intron 20.0%
!! AATATTCTTTCTTCTATACA+GGG - chr8_1:45009964-45009983 Msa1196210:CDS 20.0%
!! ATAGTTAATAGTATTGGAAG+TGG + chr8_1:45005117-45005136 None:intergenic 25.0%
! ACTTCCAATACTATTAACTA+TGG - chr8_1:45005116-45005135 Msa1196210:intron 25.0%
! AGAACCATAGTTAATAGTAT+TGG + chr8_1:45005123-45005142 None:intergenic 25.0%
!! GTAGCAAAAGTTTCAAATTT+TGG + chr8_1:45005188-45005207 None:intergenic 25.0%
! GTATAAATGTGGTAAAAGTT+TGG - chr8_1:45005472-45005491 Msa1196210:intron 25.0%
!!! CTTTGTGACTTTCTTTTTTA+TGG + chr8_1:45005752-45005771 None:intergenic 25.0%
!!! ATCTTTTCTCCTTACTTTTT+TGG - chr8_1:45005788-45005807 Msa1196210:intron 25.0%
! TTACTTGAAATATAATCTGC+AGG - chr8_1:45005906-45005925 Msa1196210:intron 25.0%
! GTGTTTATAAGATTAGATCA+AGG - chr8_1:45005940-45005959 Msa1196210:intron 25.0%
! TTGAATCGGAAGAAAAAAAA+CGG - chr8_1:45006110-45006129 Msa1196210:intron 25.0%
! AAGTTGACAAAAAAAATAGC+CGG - chr8_1:45006144-45006163 Msa1196210:intron 25.0%
! AAGTTTAGGTAATGATTCAT+TGG - chr8_1:45006173-45006192 Msa1196210:intron 25.0%
! AAACTATTGTCTACCTTTAT+AGG + chr8_1:45006424-45006443 None:intergenic 25.0%
! TCATACTTAAACATTCTACA+TGG + chr8_1:45006490-45006509 None:intergenic 25.0%
! AAGTATGAAGTGAAAATTTC+AGG - chr8_1:45006502-45006521 Msa1196210:CDS 25.0%
!! AGCGATTAATTTTGTTCTTA+AGG - chr8_1:45006625-45006644 Msa1196210:CDS 25.0%
!!! GTTTTAGGTCCAATTAAATT+AGG + chr8_1:45006841-45006860 None:intergenic 25.0%
! AATTTAATTGGACCTAAAAC+AGG - chr8_1:45006841-45006860 Msa1196210:intron 25.0%
! ATATAGAAACAGGAAACAAT+TGG + chr8_1:45007030-45007049 None:intergenic 25.0%
! TGAAAGCAATATATAGAAAC+AGG + chr8_1:45007040-45007059 None:intergenic 25.0%
!! TCAGAAAAAAGAAATTTGCT+TGG - chr8_1:45007209-45007228 Msa1196210:CDS 25.0%
! CTCATTAAATAAATGTTGTG+AGG + chr8_1:45007392-45007411 None:intergenic 25.0%
! TAGAGATGATTTAAGAAGTT+GGG - chr8_1:45007715-45007734 Msa1196210:intron 25.0%
! TTTCAACTCTATTGTTTCAT+TGG - chr8_1:45007847-45007866 Msa1196210:intron 25.0%
! ATATAAAAGAGGAAGATAGA+AGG + chr8_1:45007963-45007982 None:intergenic 25.0%
! CAACTTCAGTAATATAAAAG+AGG + chr8_1:45007974-45007993 None:intergenic 25.0%
!! AATCAATGAAATAAGGCATT+TGG - chr8_1:45008458-45008477 Msa1196210:CDS 25.0%
! TCTTTCAATTTCTTGAAGAA+TGG + chr8_1:45008541-45008560 None:intergenic 25.0%
! AATCATACATCTTTGCAAAT+AGG - chr8_1:45009242-45009261 Msa1196210:intron 25.0%
!!! GTTATTTTATATCTCAGGTA+TGG - chr8_1:45009282-45009301 Msa1196210:intron 25.0%
! GTGAAAGAATTTCATAAAGT+TGG - chr8_1:45009330-45009349 Msa1196210:intron 25.0%
! ATCAGAATAAGAATGGTATT+TGG - chr8_1:45009400-45009419 Msa1196210:intron 25.0%
!! AATGGTATTTGGAACATATT+TGG - chr8_1:45009411-45009430 Msa1196210:intron 25.0%
! CTTGCTGACAATATAAAAAA+AGG + chr8_1:45009537-45009556 None:intergenic 25.0%
! GAATATTCTTTCTTCTATAC+AGG - chr8_1:45009963-45009982 Msa1196210:CDS 25.0%
! ATATTCTTTCTTCTATACAG+GGG - chr8_1:45009965-45009984 Msa1196210:CDS 25.0%
! TGAGAAACGATATTAAAGAA+TGG - chr8_1:45010055-45010074 Msa1196210:five_prime_UTR 25.0%
! ATATTAAAGAATGGTTATGC+TGG - chr8_1:45010064-45010083 Msa1196210:five_prime_UTR 25.0%
AGCTAATACTAAGAAGCAAA+AGG - chr8_1:45004911-45004930 Msa1196210:CDS 30.0%
TTAACTATGGTTCTTGTTCT+TGG - chr8_1:45005129-45005148 Msa1196210:intron 30.0%
AGAAGATTGAATCTGTTGAA+GGG + chr8_1:45005222-45005241 None:intergenic 30.0%
!! TTGGATTGGAACATTGTTTT+TGG - chr8_1:45005313-45005332 Msa1196210:intron 30.0%
!! TTGGTTTGTAGAGAATATTC+TGG - chr8_1:45005332-45005351 Msa1196210:intron 30.0%
AAAAGCTGAAATTGTTAGAC+CGG + chr8_1:45005594-45005613 None:intergenic 30.0%
!!! TTTCTCCTTACTTTTTTGGA+AGG - chr8_1:45005792-45005811 Msa1196210:intron 30.0%
!!! TTCTCCTTACTTTTTTGGAA+GGG - chr8_1:45005793-45005812 Msa1196210:intron 30.0%
AAAACCCTTCCAAAAAAGTA+AGG + chr8_1:45005800-45005819 None:intergenic 30.0%
!! ATTTTAGTCTTTGGCATTGA+TGG - chr8_1:45005872-45005891 Msa1196210:intron 30.0%
AAGAATTCAGAGCTTATAGT+TGG - chr8_1:45005973-45005992 Msa1196210:intron 30.0%
AGAATTCAGAGCTTATAGTT+GGG - chr8_1:45005974-45005993 Msa1196210:intron 30.0%
AGGAAATTGGATTCTTCATT+GGG - chr8_1:45006008-45006027 Msa1196210:intron 30.0%
! TGGAAGGTACATGTTAAATA+AGG - chr8_1:45006053-45006072 Msa1196210:intron 30.0%
CATATCGAGATTCATTGAAT+CGG - chr8_1:45006096-45006115 Msa1196210:intron 30.0%
AGTTGACAAAAAAAATAGCC+GGG - chr8_1:45006145-45006164 Msa1196210:intron 30.0%
TTTGTAACAGGATAAACACT+AGG - chr8_1:45006264-45006283 Msa1196210:CDS 30.0%
TTGTAACAGGATAAACACTA+GGG - chr8_1:45006265-45006284 Msa1196210:CDS 30.0%
AAGGAGGATCCTAATTTAAT+TGG - chr8_1:45006829-45006848 Msa1196210:intron 30.0%
AGTGATTTCAAAATCACCTT+GGG + chr8_1:45006878-45006897 None:intergenic 30.0%
CTTAAATTTGCCCTATATCA+TGG - chr8_1:45006942-45006961 Msa1196210:intron 30.0%
TGTGAGATAGAATGTATCAT+AGG + chr8_1:45007004-45007023 None:intergenic 30.0%
!!! TTTGCTGCACTAGTTTTTAA+TGG + chr8_1:45007099-45007118 None:intergenic 30.0%
TTGAAAATTGAGAAGACAGA+TGG + chr8_1:45007291-45007310 None:intergenic 30.0%
TGAATCGGAAAATCCAAAAA+AGG - chr8_1:45007526-45007545 Msa1196210:CDS 30.0%
! GCTTGACTATTTTCCTTTTT+TGG + chr8_1:45007542-45007561 None:intergenic 30.0%
! AGGTGATATTTTCCTTCATT+GGG - chr8_1:45007685-45007704 Msa1196210:intron 30.0%
GTAGAGATGATTTAAGAAGT+TGG - chr8_1:45007714-45007733 Msa1196210:intron 30.0%
TCTTTATATGCTACAGTTTG+TGG + chr8_1:45007764-45007783 None:intergenic 30.0%
TAGCATATAAAGACACAGTT+TGG - chr8_1:45007771-45007790 Msa1196210:intron 30.0%
! GAATCAGATCTAGAATCTTA+TGG + chr8_1:45007889-45007908 None:intergenic 30.0%
TCTTCAAGAAATTGAAAGAC+TGG - chr8_1:45008542-45008561 Msa1196210:intron 30.0%
AATTGGGAGTCTAATAAATC+TGG - chr8_1:45008723-45008742 Msa1196210:intron 30.0%
AGTCTAATAAATCTGGAAGA+TGG - chr8_1:45008730-45008749 Msa1196210:intron 30.0%
GAATCAATGATAATACCATC+AGG + chr8_1:45009161-45009180 None:intergenic 30.0%
ACAAACAAACCTGAAAATGT+GGG + chr8_1:45009479-45009498 None:intergenic 30.0%
!!! ATTTTCAGGTTTGTTTGTGA+GGG - chr8_1:45009481-45009500 Msa1196210:intron 30.0%
!!! GTTTTGACATAAAGTATCGA+AGG + chr8_1:45009643-45009662 None:intergenic 30.0%
ACAACATAGAATGATATGCT+AGG + chr8_1:45009798-45009817 None:intergenic 30.0%
TGTAACATCTTCCTTGCAAA+AGG - chr8_1:45004953-45004972 Msa1196210:CDS 35.0%
! GATAGTTTGAAATGGAAGAG+TGG + chr8_1:45005032-45005051 None:intergenic 35.0%
!! ATTTGGCTTGAAACGGTTAA+TGG + chr8_1:45005075-45005094 None:intergenic 35.0%
!! GTGAAGAATTTGGCTTGAAA+CGG + chr8_1:45005082-45005101 None:intergenic 35.0%
!! TTTTGGAGAGAGAAACTCAT+GGG + chr8_1:45005171-45005190 None:intergenic 35.0%
!! ATTTTGGAGAGAGAAACTCA+TGG + chr8_1:45005172-45005191 None:intergenic 35.0%
CAGAAGATTGAATCTGTTGA+AGG + chr8_1:45005223-45005242 None:intergenic 35.0%
ACCAGTTCAATTCTGTTGAT+GGG + chr8_1:45005272-45005291 None:intergenic 35.0%
TACCAGTTCAATTCTGTTGA+TGG + chr8_1:45005273-45005292 None:intergenic 35.0%
! GTAAAAATGTTAAAGGGCGT+TGG - chr8_1:45005397-45005416 Msa1196210:intron 35.0%
CTTGTGTGTGACTATTCAAT+TGG + chr8_1:45005539-45005558 None:intergenic 35.0%
ATTGAATAGTCACACACAAG+TGG - chr8_1:45005539-45005558 Msa1196210:CDS 35.0%
TTGAATAGTCACACACAAGT+GGG - chr8_1:45005540-45005559 Msa1196210:CDS 35.0%
CTTGAAATATAATCTGCAGG+TGG - chr8_1:45005909-45005928 Msa1196210:intron 35.0%
AAATATAATCTGCAGGTGGA+GGG - chr8_1:45005913-45005932 Msa1196210:intron 35.0%
CAATGAAGAATCCAATTTCC+TGG + chr8_1:45006009-45006028 None:intergenic 35.0%
CAGGAAATTGGATTCTTCAT+TGG - chr8_1:45006007-45006026 Msa1196210:intron 35.0%
GGAAATTGGATTCTTCATTG+GGG - chr8_1:45006009-45006028 Msa1196210:intron 35.0%
ATTACCTAAACTTAGTGACC+CGG + chr8_1:45006166-45006185 None:intergenic 35.0%
TACACTGTAAGCATCTTCAT+TGG + chr8_1:45006339-45006358 None:intergenic 35.0%
AGTGTAAATCTTGATTGTGC+AGG - chr8_1:45006353-45006372 Msa1196210:CDS 35.0%
GTGTAAATCTTGATTGTGCA+GGG - chr8_1:45006354-45006373 Msa1196210:CDS 35.0%
TTTATAGGAATAGATCCAGG+AGG + chr8_1:45006409-45006428 None:intergenic 35.0%
TCCTGGATCTATTCCTATAA+AGG - chr8_1:45006408-45006427 Msa1196210:CDS 35.0%
ACCTTTATAGGAATAGATCC+AGG + chr8_1:45006412-45006431 None:intergenic 35.0%
GAAGAAATCATCATCATCAC+CGG - chr8_1:45006547-45006566 Msa1196210:CDS 35.0%
!! TCATAAAGAGTATCTCCTTC+CGG + chr8_1:45006569-45006588 None:intergenic 35.0%
GAGATACTCTTTATGAAGTC+AGG - chr8_1:45006573-45006592 Msa1196210:CDS 35.0%
ACTCTTTATGAAGTCAGGAT+CGG - chr8_1:45006578-45006597 Msa1196210:CDS 35.0%
! TTTTTCCCTCCATTCCAATT+TGG - chr8_1:45006719-45006738 Msa1196210:CDS 35.0%
! TTTTCCCTCCATTCCAATTT+GGG - chr8_1:45006720-45006739 Msa1196210:CDS 35.0%
TCCTCTGGTAAACTATCTTA+AGG - chr8_1:45006810-45006829 Msa1196210:intron 35.0%
TCCTTAAGATAGTTTACCAG+AGG + chr8_1:45006814-45006833 None:intergenic 35.0%
TCTGGTAAACTATCTTAAGG+AGG - chr8_1:45006813-45006832 Msa1196210:intron 35.0%
! GACAAACTAAAGCCTGTTTT+AGG + chr8_1:45006856-45006875 None:intergenic 35.0%
CAGTGATTTCAAAATCACCT+TGG + chr8_1:45006879-45006898 None:intergenic 35.0%
AAACTAGTGCAGCAAAGAAA+AGG - chr8_1:45007103-45007122 Msa1196210:intron 35.0%
! ATCTTGTGTCGATAAAAGCT+TGG - chr8_1:45007256-45007275 Msa1196210:CDS 35.0%
!! TGATCTGACTTACTTTTCAC+TGG - chr8_1:45007414-45007433 Msa1196210:CDS 35.0%
GCTATCTTGAACTTTGTCAT+CGG + chr8_1:45007501-45007520 None:intergenic 35.0%
TCAAGATAGCAACAGTGAAT+CGG - chr8_1:45007511-45007530 Msa1196210:CDS 35.0%
AAGGAAAATAGTCAAGCAGA+AGG - chr8_1:45007545-45007564 Msa1196210:intron 35.0%
ACAGTAACTTCCTTGGTTAA+AGG + chr8_1:45007587-45007606 None:intergenic 35.0%
GTTATTGACAGTAACTTCCT+TGG + chr8_1:45007594-45007613 None:intergenic 35.0%
! TGTTTCTGAGCATTTCCTAA+CGG + chr8_1:45007630-45007649 None:intergenic 35.0%
GATTTAGAAACGGATATACC+AGG - chr8_1:45007665-45007684 Msa1196210:intron 35.0%
CAATGAAGGAAAATATCACC+TGG + chr8_1:45007686-45007705 None:intergenic 35.0%
! CAGGTGATATTTTCCTTCAT+TGG - chr8_1:45007684-45007703 Msa1196210:intron 35.0%
! GGTGATATTTTCCTTCATTG+GGG - chr8_1:45007686-45007705 Msa1196210:intron 35.0%
TTATATGCTACAGTTTGTGG+TGG + chr8_1:45007761-45007780 None:intergenic 35.0%
AGTTTGGCGAACTCAATTAA+AGG - chr8_1:45007787-45007806 Msa1196210:intron 35.0%
!! CTTTTGGCTACATAACAGAT+CGG + chr8_1:45008206-45008225 None:intergenic 35.0%
AAGTTCAGCACAAATCTCTT+TGG - chr8_1:45008239-45008258 Msa1196210:intron 35.0%
AGTTCAGCACAAATCTCTTT+GGG - chr8_1:45008240-45008259 Msa1196210:intron 35.0%
!! TCTTTGGGAGAAGAATTTTC+AGG - chr8_1:45008255-45008274 Msa1196210:intron 35.0%
GAAAGTTGTAAAGAGTGAAG+AGG - chr8_1:45008395-45008414 Msa1196210:CDS 35.0%
! GAAATAAGGCATTTGGTTAC+TGG - chr8_1:45008465-45008484 Msa1196210:CDS 35.0%
AATGGTTTCTTGAGCTTCTT+TGG + chr8_1:45008523-45008542 None:intergenic 35.0%
!! AGAGGTTCTGAAGATACTAT+AGG + chr8_1:45008577-45008596 None:intergenic 35.0%
GGTATGAAATAGTATGCCAA+GGG - chr8_1:45008697-45008716 Msa1196210:intron 35.0%
TAGTATGCCAAGGGTTTAAT+TGG - chr8_1:45008706-45008725 Msa1196210:intron 35.0%
AGTATGCCAAGGGTTTAATT+GGG - chr8_1:45008707-45008726 Msa1196210:intron 35.0%
TAAATCTGGAAGATGGTACA+TGG - chr8_1:45008737-45008756 Msa1196210:intron 35.0%
!! CTCTTGGCTTTACTGTTATT+TGG - chr8_1:45008790-45008809 Msa1196210:intron 35.0%
TTGTTTATGTCTACGAAGCA+CGG - chr8_1:45008925-45008944 Msa1196210:intron 35.0%
TAGATACAAGACCATGTGTT+AGG - chr8_1:45009122-45009141 Msa1196210:intron 35.0%
TAAGCAATTTGCCTAACACA+TGG + chr8_1:45009136-45009155 None:intergenic 35.0%
GTGGTGATTTATAAGAGAGT+AGG - chr8_1:45009209-45009228 Msa1196210:intron 35.0%
! AAAGTTGGAATCAAAGTGCT+AGG - chr8_1:45009345-45009364 Msa1196210:intron 35.0%
! GGTATTTGGAACATATTTGG+AGG - chr8_1:45009414-45009433 Msa1196210:intron 35.0%
CACAAACAAACCTGAAAATG+TGG + chr8_1:45009480-45009499 None:intergenic 35.0%
!!! CATTTTCAGGTTTGTTTGTG+AGG - chr8_1:45009480-45009499 Msa1196210:intron 35.0%
!! AGATGTCTAGTTCCTTTTTG+TGG - chr8_1:45009555-45009574 Msa1196210:intron 35.0%
ATGGATCTTCAACCACAAAA+AGG + chr8_1:45009570-45009589 None:intergenic 35.0%
! TTTTTGTGGTTGAAGATCCA+TGG - chr8_1:45009569-45009588 Msa1196210:intron 35.0%
!! CATAAAGTATCGAAGGTTCT+CGG + chr8_1:45009636-45009655 None:intergenic 35.0%
! AAAACTCGTCACACATTTTC+AGG - chr8_1:45009658-45009677 Msa1196210:intron 35.0%
TGTTTCCCTAGCAAATAAAG+TGG - chr8_1:45009710-45009729 Msa1196210:intron 35.0%
! GTACTCCACTTTATTTGCTA+GGG + chr8_1:45009718-45009737 None:intergenic 35.0%
! TGTACTCCACTTTATTTGCT+AGG + chr8_1:45009719-45009738 None:intergenic 35.0%
ATGAACACCACATTTACTTC+AGG - chr8_1:45009849-45009868 Msa1196210:CDS 35.0%
TGTTCATCCTGAAGTAAATG+TGG + chr8_1:45009859-45009878 None:intergenic 35.0%
TGATACTGCTGTCTTTCTAT+TGG - chr8_1:45009935-45009954 Msa1196210:CDS 35.0%
TCCAAACATTGATCATTCAC+AGG - chr8_1:45010026-45010045 Msa1196210:five_prime_UTR 35.0%
TCCTGTGAATGATCAATGTT+TGG + chr8_1:45010030-45010049 None:intergenic 35.0%
! AAGAATGGTTATGCTGGTTA+AGG - chr8_1:45010070-45010089 Msa1196210:five_prime_UTR 35.0%
GGCAGTGAGATAGTTTGAAA+TGG + chr8_1:45005040-45005059 None:intergenic 40.0%
GGTTAATGGTAGCTAATCTG+TGG + chr8_1:45005061-45005080 None:intergenic 40.0%
! GAGAGAGAGTGTGAAGAATT+TGG + chr8_1:45005092-45005111 None:intergenic 40.0%
TTTGGAGAGAGAAACTCATG+GGG + chr8_1:45005170-45005189 None:intergenic 40.0%
TCCCATCAACAGAATTGAAC+TGG - chr8_1:45005268-45005287 Msa1196210:intron 40.0%
!!! AGGGCGTTGGATTTTTATAG+TGG - chr8_1:45005410-45005429 Msa1196210:intron 40.0%
TGAATAGTCACACACAAGTG+GGG - chr8_1:45005541-45005560 Msa1196210:CDS 40.0%
GAAATATAATCTGCAGGTGG+AGG - chr8_1:45005912-45005931 Msa1196210:intron 40.0%
ATTCTTCATTGGGGAGTTTC+TGG - chr8_1:45006018-45006037 Msa1196210:intron 40.0%
!! GTTTCTGGTGTGGATGATAT+TGG - chr8_1:45006033-45006052 Msa1196210:intron 40.0%
CGCGATTCATCGTAATGAAT+TGG - chr8_1:45006223-45006242 Msa1196210:CDS 40.0%
AATCTTGATTGTGCAGGGAA+TGG - chr8_1:45006359-45006378 Msa1196210:CDS 40.0%
!! ATCCAGGAGGTATCATATCA+CGG + chr8_1:45006396-45006415 None:intergenic 40.0%
AAATCATCATCATCACCGGA+AGG - chr8_1:45006551-45006570 Msa1196210:CDS 40.0%
AAGAGACTTCAAAGTTCCTC+TGG - chr8_1:45006795-45006814 Msa1196210:intron 40.0%
!!! ACTGGTTTTCCTCACTCATA+GGG - chr8_1:45007432-45007451 Msa1196210:CDS 40.0%
TGTAGAACTGCCTTTAACCA+AGG - chr8_1:45007574-45007593 Msa1196210:intron 40.0%
GCGAACTCAATTAAAGGTAG+TGG - chr8_1:45007793-45007812 Msa1196210:intron 40.0%
CGATCTGTTATGTAGCCAAA+AGG - chr8_1:45008204-45008223 Msa1196210:CDS 40.0%
GTTATGTAGCCAAAAGGAAG+TGG - chr8_1:45008210-45008229 Msa1196210:CDS 40.0%
TAGCCAAAAGGAAGTGGAAA+GGG - chr8_1:45008216-45008235 Msa1196210:CDS 40.0%
GAAGATACTATAGGCTTCAG+CGG + chr8_1:45008568-45008587 None:intergenic 40.0%
TTCGGATTCCAAAACAACCT+CGG + chr8_1:45008634-45008653 None:intergenic 40.0%
!! ATGATTTTTGGAGGCAACTC+AGG + chr8_1:45008660-45008679 None:intergenic 40.0%
GTTGCCTCCAAAAATCATGT+CGG - chr8_1:45008662-45008681 Msa1196210:intron 40.0%
TTGCCTCCAAAAATCATGTC+GGG - chr8_1:45008663-45008682 Msa1196210:intron 40.0%
GGGTATGAAATAGTATGCCA+AGG - chr8_1:45008696-45008715 Msa1196210:intron 40.0%
TAGACTCCCAATTAAACCCT+TGG + chr8_1:45008716-45008735 None:intergenic 40.0%
GCTAAAGAACTAGCATCTCT+TGG - chr8_1:45008774-45008793 Msa1196210:intron 40.0%
ACTGACAGATATGTTGACAC+CGG - chr8_1:45008962-45008981 Msa1196210:CDS 40.0%
!! AGACATATCGGTGTTAGACA+GGG + chr8_1:45009037-45009056 None:intergenic 40.0%
!! AAGACATATCGGTGTTAGAC+AGG + chr8_1:45009038-45009057 None:intergenic 40.0%
TGTCTAACACCGATATGTCT+TGG - chr8_1:45009037-45009056 Msa1196210:CDS 40.0%
ATGGCTTCAATGTGAAGTGT+CGG - chr8_1:45009069-45009088 Msa1196210:intron 40.0%
GCATGCAATGTTCAATCATG+TGG - chr8_1:45009190-45009209 Msa1196210:intron 40.0%
TGGTACCATTGATGAACTGA+AGG - chr8_1:45009302-45009321 Msa1196210:intron 40.0%
CACATCCTTCAGTTCATCAA+TGG + chr8_1:45009310-45009329 None:intergenic 40.0%
CATTGATGAACTGAAGGATG+TGG - chr8_1:45009308-45009327 Msa1196210:intron 40.0%
GCTGAGCATCAGAATAAGAA+TGG - chr8_1:45009393-45009412 Msa1196210:intron 40.0%
GGTTGAAGATCCATGGATTT+CGG - chr8_1:45009576-45009595 Msa1196210:intron 40.0%
AGTGGTATAACCGAAATCCA+TGG + chr8_1:45009589-45009608 None:intergenic 40.0%
TTCTTTCTTCTATACAGGGG+AGG - chr8_1:45009968-45009987 Msa1196210:CDS 40.0%
TCTTTCTTCTATACAGGGGA+GGG - chr8_1:45009969-45009988 Msa1196210:CDS 40.0%
TAGTGGAGATAGTTTCCATG+CGG - chr8_1:45010002-45010021 Msa1196210:exon 40.0%
!!! TGGTGATGGTTCCTTTTGCA+AGG + chr8_1:45004967-45004986 None:intergenic 45.0%
TGGTTCAGAGAAAACAGTGG+TGG + chr8_1:45005012-45005031 None:intergenic 45.0%
GAGTGGTTCAGAGAAAACAG+TGG + chr8_1:45005015-45005034 None:intergenic 45.0%
TTGCCAGAGCTAAGACTTTG+TGG - chr8_1:45005612-45005631 Msa1196210:CDS 45.0%
CATCCACAAAGTCTTAGCTC+TGG + chr8_1:45005618-45005637 None:intergenic 45.0%
ATAGTTGGGTGCAATCTACC+AGG - chr8_1:45005988-45006007 Msa1196210:intron 45.0%
GGTGCAATCTACCAGGAAAT+TGG - chr8_1:45005995-45006014 Msa1196210:intron 45.0%
CTGGTGTGGATGATATTGGA+AGG - chr8_1:45006037-45006056 Msa1196210:intron 45.0%
ATAGCCGGGTCACTAAGTTT+AGG - chr8_1:45006159-45006178 Msa1196210:intron 45.0%
!! TCCAGGAGGTATCATATCAC+GGG + chr8_1:45006395-45006414 None:intergenic 45.0%
ATCGCTGAAATCTCATCGCT+GGG + chr8_1:45006611-45006630 None:intergenic 45.0%
AATCGCTGAAATCTCATCGC+TGG + chr8_1:45006612-45006631 None:intergenic 45.0%
ACCACCCAAATTGGAATGGA+GGG + chr8_1:45006727-45006746 None:intergenic 45.0%
CAAGACCACCCAAATTGGAA+TGG + chr8_1:45006731-45006750 None:intergenic 45.0%
ATCGACAAGACCACCCAAAT+TGG + chr8_1:45006736-45006755 None:intergenic 45.0%
GGCACTTGGTATCAACACAA+AGG - chr8_1:45006772-45006791 Msa1196210:intron 45.0%
!! ACAGGCTTTAGTTTGTCCCA+AGG - chr8_1:45006859-45006878 Msa1196210:intron 45.0%
GTTGTGAGGACAAAGCTGAA+AGG + chr8_1:45007378-45007397 None:intergenic 45.0%
!!! CACTGGTTTTCCTCACTCAT+AGG - chr8_1:45007431-45007450 Msa1196210:CDS 45.0%
!! CTGGTTTTCCTCACTCATAG+GGG - chr8_1:45007433-45007452 Msa1196210:CDS 45.0%
! CATCGGTTGCTTCTGAATTC+AGG + chr8_1:45007484-45007503 None:intergenic 45.0%
ACTCTATCAGTGTCTCCGTT+AGG - chr8_1:45007612-45007631 Msa1196210:intron 45.0%
CTCTACAAACTCCCCAATGA+AGG + chr8_1:45007700-45007719 None:intergenic 45.0%
CAAAGAACACGAAGCAATGC+AGG + chr8_1:45008169-45008188 None:intergenic 45.0%
GTAGCCAAAAGGAAGTGGAA+AGG - chr8_1:45008215-45008234 Msa1196210:CDS 45.0%
! CTTCCCTTTCCACTTCCTTT+TGG + chr8_1:45008222-45008241 None:intergenic 45.0%
ACTTCCGGTAGCTCAGTTAT+TGG - chr8_1:45008354-45008373 Msa1196210:intron 45.0%
GTTGCCAATAACTGAGCTAC+CGG + chr8_1:45008361-45008380 None:intergenic 45.0%
CTCAGTTATTGGCAACAGAG+AGG - chr8_1:45008365-45008384 Msa1196210:CDS 45.0%
GTTGTAAAGAGTGAAGAGGC+AGG - chr8_1:45008399-45008418 Msa1196210:CDS 45.0%
TTTCTCCGAGGAAGCTATTG+TGG - chr8_1:45008605-45008624 Msa1196210:CDS 45.0%
GGATTCCACAATAGCTTCCT+CGG + chr8_1:45008613-45008632 None:intergenic 45.0%
! TGTGGAATCCGAGGTTGTTT+TGG - chr8_1:45008623-45008642 Msa1196210:intron 45.0%
!! GTTCCCGACATGATTTTTGG+AGG + chr8_1:45008669-45008688 None:intergenic 45.0%
! CCTGTTCCCGACATGATTTT+TGG + chr8_1:45008672-45008691 None:intergenic 45.0%
CCAAAAATCATGTCGGGAAC+AGG - chr8_1:45008669-45008688 Msa1196210:intron 45.0%
ATCCCTTGGCATGTATCCTT+CGG + chr8_1:45008844-45008863 None:intergenic 45.0%
GTCCAGTGTCCAAGACATAT+CGG + chr8_1:45009049-45009068 None:intergenic 45.0%
TATGTCTTGGACACTGGACA+TGG - chr8_1:45009050-45009069 Msa1196210:CDS 45.0%
GGCAAATTGCTTAGACCTGA+TGG - chr8_1:45009143-45009162 Msa1196210:intron 45.0%
TATTTGGAGGTCGTCTCAAC+TGG - chr8_1:45009427-45009446 Msa1196210:intron 45.0%
ATTTGGAGGTCGTCTCAACT+GGG - chr8_1:45009428-45009447 Msa1196210:intron 45.0%
! AGCTGATGACCCACATTTTC+AGG - chr8_1:45009467-45009486 Msa1196210:intron 45.0%
CTTTCTTCTATACAGGGGAG+GGG - chr8_1:45009970-45009989 Msa1196210:CDS 45.0%
!!! AATTTTACTTTTTTTTTTTA+GGG + chr8_1:45008087-45008106 None:intergenic 5.0%
!!! AAATTTTACTTTTTTTTTTT+AGG + chr8_1:45008088-45008107 None:intergenic 5.0%
!! ATTTATATAATTTAAATTCT+AGG - chr8_1:45008862-45008881 Msa1196210:intron 5.0%
ATGATAGGTGGTCGTGGTGA+TGG + chr8_1:45004981-45005000 None:intergenic 50.0%
ATGCTCATGATAGGTGGTCG+TGG + chr8_1:45004987-45005006 None:intergenic 50.0%
GTGGAGATGCTCATGATAGG+TGG + chr8_1:45004993-45005012 None:intergenic 50.0%
! GTGGTGGAGATGCTCATGAT+AGG + chr8_1:45004996-45005015 None:intergenic 50.0%
TGGGGATCCTATGTTCACAC+TGG - chr8_1:45005559-45005578 Msa1196210:CDS 50.0%
GTCGTGACCAGTGTGAACAT+AGG + chr8_1:45005569-45005588 None:intergenic 50.0%
TTCACACTGGTCACGACATC+CGG - chr8_1:45005572-45005591 Msa1196210:CDS 50.0%
TAATCTGCAGGTGGAGGGAA+AGG - chr8_1:45005918-45005937 Msa1196210:intron 50.0%
!! TCATTGGGGAGTTTCTGGTG+TGG - chr8_1:45006023-45006042 Msa1196210:intron 50.0%
!! CCAGGAGGTATCATATCACG+GGG + chr8_1:45006394-45006413 None:intergenic 50.0%
TCCCTCCATTCCAATTTGGG+TGG - chr8_1:45006723-45006742 Msa1196210:CDS 50.0%
GACCACCCAAATTGGAATGG+AGG + chr8_1:45006728-45006747 None:intergenic 50.0%
TCCTCACTCATAGGGGACAT+AGG - chr8_1:45007440-45007459 Msa1196210:CDS 50.0%
CCTCACTCATAGGGGACATA+GGG - chr8_1:45007441-45007460 Msa1196210:CDS 50.0%
!! GCTACAGTTTGTGGTGGATG+AGG + chr8_1:45007755-45007774 None:intergenic 50.0%
TACGTCCCTCTCTCAACTTC+CGG - chr8_1:45008339-45008358 Msa1196210:intron 50.0%
AGCTACCGGAAGTTGAGAGA+GGG + chr8_1:45008347-45008366 None:intergenic 50.0%
ATAGCTTCCTCGGAGAAAGC+TGG + chr8_1:45008603-45008622 None:intergenic 50.0%
GGAAGCTATTGTGGAATCCG+AGG - chr8_1:45008614-45008633 Msa1196210:CDS 50.0%
TGGAGGCAACTCAGGTGATT+CGG + chr8_1:45008652-45008671 None:intergenic 50.0%
GAAACAGAGTCTGTAGGTGG+CGG + chr8_1:45008819-45008838 None:intergenic 50.0%
GGTGAAACAGAGTCTGTAGG+TGG + chr8_1:45008822-45008841 None:intergenic 50.0%
TCGGGTGAAACAGAGTCTGT+AGG + chr8_1:45008825-45008844 None:intergenic 50.0%
ACAGACTCTGTTTCACCCGA+AGG - chr8_1:45008825-45008844 Msa1196210:intron 50.0%
ACCCGAAGGATACATGCCAA+GGG - chr8_1:45008839-45008858 Msa1196210:intron 50.0%
TCCCTTGGCATGTATCCTTC+GGG + chr8_1:45008843-45008862 None:intergenic 50.0%
CACCGATATGTCTTGGACAC+TGG - chr8_1:45009044-45009063 Msa1196210:CDS 50.0%
TATCGAAGGTTCTCGGTCAC+TGG + chr8_1:45009629-45009648 None:intergenic 50.0%
! GATCAATGTTTGGAGCCGCA+TGG + chr8_1:45010020-45010039 None:intergenic 50.0%
GGAGAGAGAAACTCATGGGG+TGG + chr8_1:45005167-45005186 None:intergenic 55.0%
!! GGAGGTATCATATCACGGGG+TGG + chr8_1:45006391-45006410 None:intergenic 55.0%
CCCCGTGATATGATACCTCC+TGG - chr8_1:45006391-45006410 Msa1196210:CDS 55.0%
!! TTGGGTGGTCTTGTCGATGC+AGG - chr8_1:45006738-45006757 Msa1196210:CDS 55.0%
TCGATGCAGGACGAGGAAAC+TGG - chr8_1:45006751-45006770 Msa1196210:CDS 55.0%
AGGACGAGGAAACTGGCACT+TGG - chr8_1:45006758-45006777 Msa1196210:CDS 55.0%
CCCTATGTCCCCTATGAGTG+AGG + chr8_1:45007444-45007463 None:intergenic 55.0%
ACTCATAGGGGACATAGGGC+AGG - chr8_1:45007445-45007464 Msa1196210:CDS 55.0%
!! GTTTGTGGTGGATGAGGAGC+AGG + chr8_1:45007749-45007768 None:intergenic 55.0%
GAGCTACCGGAAGTTGAGAG+AGG + chr8_1:45008348-45008367 None:intergenic 55.0%
CTCGGAGAAAGCTGGAACAG+AGG + chr8_1:45008595-45008614 None:intergenic 55.0%
CTCTGTTCCAGCTTTCTCCG+AGG - chr8_1:45008593-45008612 Msa1196210:CDS 55.0%
ATCATGTCGGGAACAGGCAC+AGG - chr8_1:45008675-45008694 Msa1196210:intron 55.0%
TCATGTCGGGAACAGGCACA+GGG - chr8_1:45008676-45008695 Msa1196210:intron 55.0%
CACCCGAAGGATACATGCCA+AGG - chr8_1:45008838-45008857 Msa1196210:intron 55.0%
! GAGCGGGGGAAAAGTACAAG+TGG + chr8_1:45009607-45009626 None:intergenic 55.0%
AAGGTTCTCGGTCACTGGAG+CGG + chr8_1:45009624-45009643 None:intergenic 55.0%
! GGTCTTGTCGATGCAGGACG+AGG - chr8_1:45006744-45006763 Msa1196210:CDS 60.0%
!! TGTGGTGGATGAGGAGCAGG+TGG + chr8_1:45007746-45007765 None:intergenic 60.0%
GAGTGAAGAGGCAGGCGAAG+AGG - chr8_1:45008407-45008426 Msa1196210:CDS 60.0%
AGGTTCTCGGTCACTGGAGC+GGG + chr8_1:45009623-45009642 None:intergenic 60.0%
GGGAGGGGCAACAAGAGTAG+TGG - chr8_1:45009985-45010004 Msa1196210:CDS 60.0%
GTTCTCGGTCACTGGAGCGG+GGG + chr8_1:45009621-45009640 None:intergenic 65.0%
GGTTCTCGGTCACTGGAGCG+GGG + chr8_1:45009622-45009641 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 45004892 45010116 45004892 ID=Msa1196210;Name=Msa1196210
chr8_1 mRNA 45004892 45010116 45004892 ID=Msa1196210-mRNA-1;Parent=Msa1196210;Name=Msa1196210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=107|0.75|0.66|1|1|1|9|0|664
chr8_1 exon 45004892 45005023 45004892 ID=Msa1196210-mRNA-1:exon:14489;Parent=Msa1196210-mRNA-1
chr8_1 exon 45005520 45005709 45005520 ID=Msa1196210-mRNA-1:exon:14488;Parent=Msa1196210-mRNA-1
chr8_1 exon 45006197 45006789 45006197 ID=Msa1196210-mRNA-1:exon:14487;Parent=Msa1196210-mRNA-1
chr8_1 exon 45007200 45007555 45007200 ID=Msa1196210-mRNA-1:exon:14486;Parent=Msa1196210-mRNA-1
chr8_1 exon 45008128 45008248 45008128 ID=Msa1196210-mRNA-1:exon:14485;Parent=Msa1196210-mRNA-1
chr8_1 exon 45008362 45008484 45008362 ID=Msa1196210-mRNA-1:exon:14484;Parent=Msa1196210-mRNA-1
chr8_1 exon 45008579 45008633 45008579 ID=Msa1196210-mRNA-1:exon:14483;Parent=Msa1196210-mRNA-1
chr8_1 exon 45008950 45009080 45008950 ID=Msa1196210-mRNA-1:exon:14482;Parent=Msa1196210-mRNA-1
chr8_1 exon 45009719 45010116 45009719 ID=Msa1196210-mRNA-1:exon:14481;Parent=Msa1196210-mRNA-1
chr8_1 five_prime_UTR 45010010 45010116 45010010 ID=Msa1196210-mRNA-1:five_prime_utr;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45009719 45010009 45009719 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45008950 45009080 45008950 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45008579 45008633 45008579 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45008362 45008484 45008362 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45008128 45008248 45008128 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45007200 45007555 45007200 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45006197 45006789 45006197 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45005520 45005709 45005520 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
chr8_1 CDS 45004892 45005023 45004892 ID=Msa1196210-mRNA-1:cds;Parent=Msa1196210-mRNA-1
Gene Sequence

>Msa1196210

ATGAGCATCTCCACCACTGTTTTCTCTGAACCACTCTTCCATTTCAAACTATCTCACTGCCACAGATTAGCTACCATTAACCGTTTCAAGCCAAATTCTTCACACTCTCTCTCTTCCACTTCCAATACTATTAACTATGGTTCTTGTTCTTGGACATTGAAGCAGCCACCCCATGAGTTTCTCTCTCCAAAATTTGAAACTTTTGCTACAAATACTGATACCCTTCAACAGATTCAATCTTCTGATGATGTCATTTTCAGTCAGACTCATCCCATCAACAGAATTGAACTGGTGGAGGGAAAGGTGTTTATAAGATTAGATCAAGGGAATGATTTGAAGAATTCAGAGCTTATAGTTGGGTGCAATCTACCAGGAAATTGGATTCTTCATTGGGGAGTTTCTGGTGTGGATGATATTGGAAGGGAATGGAATCAACCACCCCGTGATATGATACCTCCTGGATCTATTCCTATAAAGGACTATGCAATAGAGACACATTTGAAGAAATCATCATCATCACCGGAAGGAGATACTCTTTATGAAGTCAGGATCGGTTTTAAGCCCAGCGATGAGATTTCAGCGATTAATTTTGTTCTTAAGGACGAGGAAACTGGCACTTGGTATCAACACAAAGGAAGAGACTTCAAAGTTCCTCTGGTAAACTATCTTAAGGAGGATCCTAATTTAATTGGACCTAAAACAGGCTTTAGTTTGTCCCAAGGGGACATAGGGCAGGTATCTAAAGTTATCCTGAATTCAGAAGCAACCGATGACAAAGTTCAAGATAGCAACAGTGAATCGGAAAATCCAAAAAAGGAAAATAGTCAAGCAGAAGGTTTCAATGTAGAACTGCCTTTAACCAAGGAAGTTACTGTCAATAACTCTATCAGTGTCTCCGTTAGGAAATGCTCAGAAACAGCTAAAAATATTTTGGATTTAGAAACGGATATACCAGGTGATATTTTCCTTCATTGGGGAGTTTGTAGAGATGATTTAAGAAGTTGGGAAGCTCCACCTGCTCCTCATCCACCACAAACTGTAGCATATAAAGACACAGTTTGGCGAACTCAATTAAAGCCAAAAGGAAGTGGAAAGGGAAGTTCAGCACAAATCTCTTTGGGAGAAGAATTTTCAGGATTTCTTTTTGTTCTTAAGATAAATGAAAATTCATGGTTAAATAACAAGGGAATTGATTTTTACGTCCCTCTCTCAACTTCCGGTAGCTCAGTTATTGGCAACAGAGAGGATCAATCGAAAGTTGTAAAGAGTGAAGAGGCAGGCGAAGAGGAATCTAACTCTGAATTTACCAATGAAATAATCAATGAAATAAGGCATTTGGTTACTGGCATTTCATCTGTGAAGAGACGAAAAACGAAATCCAAAGAAGCTCAAGAAACCATTCTTCAAGAAATTGAAAGACTGGCCGCTGAAGCCTATAGTATCTTCAGAACCTCTGTTCCAGCTTTCTCCGAGGAAGCTATTGTGGAATCCGAGGTTGTTTTGGAATCCGAATCACCTGAGTTGCCTCCAAAAATCATGTCGGGAACAGGCACAGGGTATGAAATAGTATGCCAAGGGTTTAATTGGGAGTCTAATAAATCTGGAAGATGGTACATGGAGCTTAAAGAGAAAGCTAAAGAACTAGCATCTCTTGGCTTTACTGTTATTTGGTATGGTACCATTGATGAACTGAAGGATGTGGTGAAAGAATTTCATAAAGTTGGAATCAAAGTGCTAGGAGATGCTGTTTTGAATCATCGTTGTGCTGAGCATCAGAATAAGAATGGTATTTGGAACATATTTGGAGGTCGTCTCAACTGGGATGATCGTGCAGTTGTAGCTGATGACCCACATTTTCAGGGGAGGGGCAACAAGAGTAGTGGAGATAGTTTCCATGCGGCTCCAAACATTGATCATTCACAGGACTTTGTGAGAAACGATATTAAAGAATGGTTATGCTGGTTAAGGTTTATATTCCAAATTCTCATTTTC

Protein sequence

>Msa1196210

MSISTTVFSEPLFHFKLSHCHRLATINRFKPNSSHSLSSTSNTINYGSCSWTLKQPPHEFLSPKFETFATNTDTLQQIQSSDDVIFSQTHPINRIELVEGKVFIRLDQGNDLKNSELIVGCNLPGNWILHWGVSGVDDIGREWNQPPRDMIPPGSIPIKDYAIETHLKKSSSSPEGDTLYEVRIGFKPSDEISAINFVLKDEETGTWYQHKGRDFKVPLVNYLKEDPNLIGPKTGFSLSQGDIGQVSKVILNSEATDDKVQDSNSESENPKKENSQAEGFNVELPLTKEVTVNNSISVSVRKCSETAKNILDLETDIPGDIFLHWGVCRDDLRSWEAPPAPHPPQTVAYKDTVWRTQLKPKGSGKGSSAQISLGEEFSGFLFVLKINENSWLNNKGIDFYVPLSTSGSSVIGNREDQSKVVKSEEAGEEESNSEFTNEIINEIRHLVTGISSVKRRKTKSKEAQETILQEIERLAAEAYSIFRTSVPAFSEEAIVESEVVLESESPELPPKIMSGTGTGYEIVCQGFNWESNKSGRWYMELKEKAKELASLGFTVIWYGTIDELKDVVKEFHKVGIKVLGDAVLNHRCAEHQNKNGIWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDSFHAAPNIDHSQDFVRNDIKEWLCWLRFIFQILIF