Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102680 | XP_003589515.1 | 98.879 | 535 | 6 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1081 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102680 | sp|B6ETT4|SYT2_ARATH | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102680 | G7I7R4 | 98.879 | 535 | 6 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1081 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003440 | Msa0102680 | 0.844412 | 7.683973e-59 | -8.615850e-47 |
| Msa0011850 | Msa0102680 | 0.816515 | 5.313570e-52 | -8.615850e-47 |
| Msa0046310 | Msa0102680 | 0.841416 | 4.816306e-58 | -8.615850e-47 |
| Msa0050730 | Msa0102680 | 0.819712 | 1.005511e-52 | -8.615850e-47 |
| Msa0050760 | Msa0102680 | 0.821049 | 4.963980e-53 | -8.615850e-47 |
| Msa0085240 | Msa0102680 | 0.828792 | 7.383683e-55 | -8.615850e-47 |
| Msa0102680 | Msa0102750 | 0.954105 | 6.237802e-112 | -8.615850e-47 |
| Msa0102680 | Msa0105420 | 0.823540 | 1.310964e-53 | -8.615850e-47 |
| Msa0102680 | Msa0137660 | -0.814016 | 1.909406e-51 | -8.615850e-47 |
| Msa0102680 | Msa0177650 | 0.817555 | 3.103840e-52 | -8.615850e-47 |
| Msa0102680 | Msa0182750 | -0.813527 | 2.446403e-51 | -8.615850e-47 |
| Msa0102680 | Msa0193650 | 0.865912 | 4.184314e-65 | -8.615850e-47 |
| Msa0102680 | Msa0273710 | 0.838325 | 3.075326e-57 | -8.615850e-47 |
| Msa0102680 | Msa0288320 | 0.806006 | 1.014368e-49 | -8.615850e-47 |
| Msa0102680 | Msa0313990 | 0.848681 | 5.248116e-60 | -8.615850e-47 |
| Msa0102680 | Msa0317390 | 0.800638 | 1.312163e-48 | -8.615850e-47 |
| Msa0102680 | Msa0335040 | 0.803215 | 3.877615e-49 | -8.615850e-47 |
| Msa0102680 | Msa0511890 | 0.805190 | 1.504472e-49 | -8.615850e-47 |
| Msa0102680 | Msa0524200 | -0.814131 | 1.801397e-51 | -8.615850e-47 |
| Msa0102680 | Msa0761760 | 0.802498 | 5.452821e-49 | -8.615850e-47 |
| Msa0102680 | Msa0842240 | 0.803256 | 3.802146e-49 | -8.615850e-47 |
| Msa0102680 | Msa0908170 | 0.831557 | 1.560521e-55 | -8.615850e-47 |
| Msa0102680 | Msa0959010 | 0.809486 | 1.848054e-50 | -8.615850e-47 |
| Msa0102680 | Msa1080770 | 0.801612 | 8.295617e-49 | -8.615850e-47 |
| Msa0102680 | Msa1221900 | 0.814743 | 1.319023e-51 | -8.615850e-47 |
| Msa0102680 | Msa1241810 | 0.801764 | 7.720162e-49 | -8.615850e-47 |
| Msa0102680 | Msa1265070 | 0.814238 | 1.705972e-51 | -8.615850e-47 |
| Msa0102680 | Msa1265250 | 0.809482 | 1.851275e-50 | -8.615850e-47 |
| Msa0102680 | Msa1282930 | 0.802547 | 5.326647e-49 | -8.615850e-47 |
| Msa0102680 | Msa1337730 | 0.821650 | 3.607805e-53 | -8.615850e-47 |
| Msa0102680 | Msa1367390 | -0.814044 | 1.882477e-51 | -8.615850e-47 |
| Msa0102680 | Msa1370650 | 0.815165 | 1.063306e-51 | -8.615850e-47 |
| Msa0102680 | Msa1404540 | 0.810581 | 1.073281e-50 | -8.615850e-47 |
| Msa0102680 | Msa1409520 | 0.840462 | 8.568679e-58 | -8.615850e-47 |
| Msa0102680 | Msa1431060 | 0.810356 | 1.200592e-50 | -8.615850e-47 |
| Msa0102680 | Msa1440600 | 0.823469 | 1.362232e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102680 | MtrunA17_Chr1g0156811 | 98.879 | 535 | 6 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1081 |
| Msa0102680 | MtrunA17_Chr1g0199571 | 52.844 | 545 | 244 | 5 | 1 | 534 | 1 | 543 | 0.0 | 569 |
| Msa0102680 | MtrunA17_Chr4g0037111 | 77.673 | 318 | 71 | 0 | 18 | 335 | 18 | 335 | 0.0 | 532 |
| Msa0102680 | MtrunA17_Chr4g0037121 | 68.878 | 196 | 57 | 2 | 342 | 534 | 1 | 195 | 6.92e-95 | 287 |
| Msa0102680 | MtrunA17_Chr4g0064531 | 31.002 | 529 | 320 | 12 | 40 | 532 | 38 | 557 | 6.49e-75 | 247 |
| Msa0102680 | MtrunA17_Chr7g0246311 | 32.945 | 343 | 219 | 6 | 59 | 395 | 58 | 395 | 6.10e-59 | 204 |
| Msa0102680 | MtrunA17_Chr3g0137471 | 28.957 | 556 | 295 | 18 | 53 | 532 | 51 | 582 | 1.10e-56 | 199 |
| Msa0102680 | MtrunA17_Chr8g0351231 | 31.707 | 410 | 251 | 12 | 1 | 395 | 1 | 396 | 7.48e-54 | 190 |
| Msa0102680 | MtrunA17_Chr4g0037181 | 55.856 | 111 | 41 | 2 | 342 | 449 | 1 | 106 | 1.83e-31 | 119 |
| Msa0102680 | MtrunA17_Chr7g0249671 | 61.250 | 80 | 29 | 2 | 453 | 531 | 2 | 80 | 1.53e-20 | 85.9 |
| Msa0102680 | MtrunA17_Chr2g0313621 | 26.871 | 294 | 185 | 11 | 67 | 336 | 72 | 359 | 4.93e-19 | 90.9 |
| Msa0102680 | MtrunA17_Chr6g0478401 | 41.573 | 89 | 47 | 3 | 255 | 343 | 13 | 96 | 3.50e-13 | 68.2 |
| Msa0102680 | MtrunA17_Chr6g0484401 | 20.537 | 521 | 334 | 23 | 69 | 531 | 97 | 595 | 5.41e-13 | 72.0 |
| Msa0102680 | MtrunA17_Chr3g0111361 | 40.449 | 89 | 48 | 3 | 255 | 343 | 1 | 84 | 3.17e-11 | 62.0 |
| Msa0102680 | MtrunA17_Chr2g0280981 | 38.824 | 85 | 47 | 3 | 259 | 343 | 4 | 83 | 9.00e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0102680 | AT1G20080.2 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 828 |
| Msa0102680 | AT1G20080.3 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 828 |
| Msa0102680 | AT1G20080.4 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 828 |
| Msa0102680 | AT1G20080.1 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 828 |
| Msa0102680 | AT1G20080.5 | 71.881 | 537 | 146 | 2 | 1 | 534 | 1 | 535 | 0.0 | 828 |
| Msa0102680 | AT2G20990.1 | 69.759 | 539 | 158 | 2 | 1 | 534 | 1 | 539 | 0.0 | 794 |
| Msa0102680 | AT2G20990.2 | 66.785 | 563 | 158 | 3 | 1 | 534 | 1 | 563 | 0.0 | 780 |
| Msa0102680 | AT2G20990.3 | 65.165 | 577 | 158 | 3 | 1 | 534 | 1 | 577 | 0.0 | 777 |
| Msa0102680 | AT5G04220.2 | 52.222 | 540 | 251 | 6 | 1 | 534 | 1 | 539 | 0.0 | 558 |
| Msa0102680 | AT5G04220.3 | 54.184 | 478 | 212 | 6 | 63 | 534 | 1 | 477 | 0.0 | 524 |
| Msa0102680 | AT2G21010.1 | 61.628 | 258 | 94 | 2 | 278 | 534 | 1 | 254 | 5.81e-112 | 333 |
| Msa0102680 | AT5G04220.1 | 50.000 | 316 | 151 | 6 | 225 | 534 | 3 | 317 | 6.44e-98 | 300 |
| Msa0102680 | AT1G05500.1 | 30.605 | 562 | 339 | 13 | 11 | 532 | 1 | 551 | 3.02e-80 | 261 |
| Msa0102680 | AT1G05500.2 | 32.134 | 417 | 243 | 10 | 146 | 532 | 1 | 407 | 2.12e-58 | 200 |
| Msa0102680 | AT3G61050.2 | 32.394 | 355 | 229 | 6 | 60 | 408 | 59 | 408 | 7.48e-55 | 193 |
| Msa0102680 | AT3G61050.1 | 32.394 | 355 | 229 | 6 | 60 | 408 | 59 | 408 | 7.48e-55 | 193 |
| Msa0102680 | AT2G21040.1 | 62.069 | 87 | 33 | 0 | 401 | 487 | 2 | 88 | 1.60e-34 | 131 |
| Msa0102680 | AT3G60950.1 | 26.351 | 296 | 170 | 8 | 73 | 366 | 41 | 290 | 4.31e-21 | 97.4 |
| Msa0102680 | AT3G61030.1 | 25.338 | 296 | 166 | 8 | 73 | 366 | 41 | 283 | 5.70e-19 | 90.5 |
| Msa0102680 | AT3G14590.1 | 27.027 | 296 | 184 | 11 | 67 | 336 | 23 | 312 | 1.85e-17 | 86.3 |
| Msa0102680 | AT3G14590.2 | 27.027 | 296 | 184 | 11 | 67 | 336 | 68 | 357 | 1.87e-17 | 86.3 |
| Msa0102680 | AT3G14590.3 | 27.027 | 296 | 184 | 11 | 67 | 336 | 37 | 326 | 2.02e-17 | 86.3 |
| Msa0102680 | AT1G48590.4 | 42.105 | 95 | 49 | 4 | 249 | 343 | 1 | 89 | 2.74e-14 | 71.2 |
| Msa0102680 | AT1G48590.1 | 42.105 | 95 | 49 | 4 | 249 | 343 | 1 | 89 | 2.74e-14 | 71.2 |
| Msa0102680 | AT1G48590.2 | 42.105 | 95 | 49 | 4 | 249 | 343 | 32 | 120 | 3.63e-14 | 72.0 |
| Msa0102680 | AT3G14590.5 | 26.199 | 271 | 170 | 10 | 92 | 336 | 5 | 271 | 3.02e-13 | 72.8 |
| Msa0102680 | AT2G01540.1 | 40.909 | 88 | 47 | 3 | 256 | 343 | 3 | 85 | 2.06e-12 | 66.2 |
| Msa0102680 | AT3G14590.4 | 26.316 | 247 | 155 | 9 | 113 | 336 | 27 | 269 | 7.20e-12 | 68.6 |
| Msa0102680 | AT3G17980.1 | 39.130 | 92 | 51 | 3 | 252 | 343 | 10 | 96 | 2.30e-11 | 63.2 |
| Msa0102680 | AT1G73580.1 | 41.667 | 96 | 51 | 3 | 255 | 350 | 4 | 94 | 2.40e-11 | 62.8 |
Find 123 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCCATAAGGGTATTTC+TGG | 0.176766 | 1_3:+9518115 | None:intergenic |
| TCGCAAACAGAAAATCTTAT+TGG | 0.183663 | 1_3:+9514600 | None:intergenic |
| TACTGACCAATCATTCATTA+TGG | 0.189172 | 1_3:+9515007 | None:intergenic |
| GATAACTCATCATCCTTAAA+AGG | 0.195494 | 1_3:+9515947 | None:intergenic |
| TTGCAGCCACATGTTGATTT+TGG | 0.196155 | 1_3:-9517198 | Msa0102680:intron |
| CTTCAACATCTTCAGCTTCA+TGG | 0.205719 | 1_3:+9515852 | None:intergenic |
| TGTCTATTCCTGGTCTTTAC+AGG | 0.225371 | 1_3:-9517149 | Msa0102680:CDS |
| TTTGCGCGGCTTATATTTAA+AGG | 0.251485 | 1_3:-9515809 | Msa0102680:CDS |
| GGAATTTGTTCAGCAATAAT+AGG | 0.273016 | 1_3:+9517810 | None:intergenic |
| TTAAACTCTTCATTCCATTC+TGG | 0.286995 | 1_3:+9516523 | None:intergenic |
| TTTGTGGCCTAAGGCCTTAC+AGG | 0.290174 | 1_3:-9516827 | Msa0102680:CDS |
| TACCATACCTTGTTCAAATA+AGG | 0.292069 | 1_3:+9517956 | None:intergenic |
| AGTACTACTCTGGTTTAGTT+TGG | 0.301538 | 1_3:-9518668 | Msa0102680:five_prime_UTR |
| CTCCTAATATATGCAAGATC+TGG | 0.302802 | 1_3:+9514751 | None:intergenic |
| GCTTAGAAAGAAAGATATAA+TGG | 0.304229 | 1_3:-9516632 | Msa0102680:CDS |
| TGATGAAAAGGAATTGATTA+TGG | 0.312221 | 1_3:-9517603 | Msa0102680:CDS |
| TTTCTTGTTTGCAGCTTGAT+TGG | 0.313508 | 1_3:-9518006 | Msa0102680:intron |
| TTAACTGCAACTATAATGTT+AGG | 0.313515 | 1_3:+9517554 | None:intergenic |
| GGATCCTACATTTACTCCTT+TGG | 0.316311 | 1_3:-9518173 | Msa0102680:CDS |
| CATGAGAGACACATAAATAT+TGG | 0.316964 | 1_3:+9517311 | None:intergenic |
| TGCTTCCAGAAATACCCTTA+TGG | 0.317531 | 1_3:-9518120 | Msa0102680:CDS |
| ATAGTTGCAGTTAAAGCATT+TGG | 0.324968 | 1_3:-9517545 | Msa0102680:CDS |
| TAATGCTTAATGTTTATGAT+TGG | 0.327754 | 1_3:-9516468 | Msa0102680:CDS |
| ATGATTGGTCAGTAGTAAAT+AGG | 0.332208 | 1_3:-9514998 | Msa0102680:three_prime_UTR |
| AATTTAAGAGTAAGTAGTTT+TGG | 0.333174 | 1_3:+9516046 | None:intergenic |
| GGCCTTACAGGTGCAAATAA+TGG | 0.335538 | 1_3:-9516815 | Msa0102680:CDS |
| GCGCATAATGTTGAAGCCTT+TGG | 0.341358 | 1_3:-9517355 | Msa0102680:CDS |
| TTCTCATTCTCAGGATCATT+AGG | 0.353471 | 1_3:+9516007 | None:intergenic |
| ATATGAGACAGTGTACTATT+TGG | 0.354241 | 1_3:-9514687 | Msa0102680:three_prime_UTR |
| TTATGGAATTATCAATGAAA+TGG | 0.362011 | 1_3:-9517586 | Msa0102680:CDS |
| ACTGACCAATCATTCATTAT+GGG | 0.371685 | 1_3:+9515008 | None:intergenic |
| TTGAGTTTAAGTTTCACATA+AGG | 0.380151 | 1_3:+9516598 | None:intergenic |
| AACATAAAGTCTCTCATTGA+TGG | 0.380639 | 1_3:+9515279 | None:intergenic |
| TGAGTTTAAGTTTCACATAA+GGG | 0.381669 | 1_3:+9516599 | None:intergenic |
| TAACATACACGGTCATAATC+TGG | 0.388897 | 1_3:+9518088 | None:intergenic |
| TGGCAATTGTGCAGCATGTA+AGG | 0.397069 | 1_3:-9515357 | Msa0102680:intron |
| TGAAATGTTTCACCCCATCT+TGG | 0.402322 | 1_3:+9515322 | None:intergenic |
| CCCCAGATCTTGCATATATT+AGG | 0.403330 | 1_3:-9514753 | Msa0102680:three_prime_UTR |
| TCAGGAAATTATAAAAGATC+AGG | 0.404435 | 1_3:-9516863 | Msa0102680:intron |
| ACTTCACTTGGATTGTTGAT+TGG | 0.408025 | 1_3:-9518519 | Msa0102680:CDS |
| GCAGATGCAATGTCTATTCC+TGG | 0.408163 | 1_3:-9517159 | Msa0102680:CDS |
| ATGCATGTAACATGGAAGTT+TGG | 0.411112 | 1_3:-9514948 | Msa0102680:three_prime_UTR |
| AATGCTTAATGTTTATGATT+GGG | 0.413882 | 1_3:-9516467 | Msa0102680:CDS |
| ATCCATTATTTGCACCTGTA+AGG | 0.414927 | 1_3:+9516813 | None:intergenic |
| CTTAGAAAGAAAGATATAAT+GGG | 0.420642 | 1_3:-9516631 | Msa0102680:CDS |
| CAACTTCAATATCAATGTCT+AGG | 0.423562 | 1_3:+9518592 | None:intergenic |
| CCACTAGCAGGTGTTCCTTC+CGG | 0.429816 | 1_3:+9515896 | None:intergenic |
| ATGCAGCAGGCCTAACTTTG+AGG | 0.430649 | 1_3:+9515240 | None:intergenic |
| TAATGTTTATGATTGGGAAC+AGG | 0.431633 | 1_3:-9516461 | Msa0102680:intron |
| GTTTGGAAAGGCTGAGAAGA+TGG | 0.433941 | 1_3:-9516110 | Msa0102680:CDS |
| CCACGTGACTTCTCATTCTC+AGG | 0.435478 | 1_3:+9515998 | None:intergenic |
| TGAATTTGAAGAACTTAACT+TGG | 0.437517 | 1_3:-9517766 | Msa0102680:CDS |
| TGGATTGCGAGCAACAGTTC+AGG | 0.437684 | 1_3:-9517525 | Msa0102680:intron |
| GTGTTACCTTTGGATGCAGC+AGG | 0.438661 | 1_3:+9515227 | None:intergenic |
| GAATTATCAATGAAATGGGC+TGG | 0.454207 | 1_3:-9517581 | Msa0102680:CDS |
| TTCACATGAAGAATTCCAAC+TGG | 0.456262 | 1_3:+9516673 | None:intergenic |
| AGTGTATAGCACTGATGAAA+AGG | 0.456613 | 1_3:-9517615 | Msa0102680:CDS |
| TCCTAATATATGCAAGATCT+GGG | 0.459264 | 1_3:+9514752 | None:intergenic |
| AGTTTCTTTCATATCAAAAG+TGG | 0.460270 | 1_3:+9518638 | None:intergenic |
| TTTGGTGTAAGCTCTTTCAA+TGG | 0.460667 | 1_3:+9516073 | None:intergenic |
| TTAAATATAAGCCGCGCAAA+CGG | 0.466177 | 1_3:+9515812 | None:intergenic |
| CTATATATACCTTGAAAAGT+TGG | 0.467929 | 1_3:+9517732 | None:intergenic |
| CATGAAGCTGAAGATGTTGA+AGG | 0.474251 | 1_3:-9515851 | Msa0102680:CDS |
| TTTGGAATTGGAACTTCACT+TGG | 0.478660 | 1_3:-9518531 | Msa0102680:CDS |
| TTATGTGTCTCTCATGGAAA+AGG | 0.484817 | 1_3:-9517304 | Msa0102680:intron |
| AAACTGAATAAATCAATGCT+TGG | 0.488339 | 1_3:-9514723 | Msa0102680:three_prime_UTR |
| ATAAATTTGTTGAGTGTATG+TGG | 0.489433 | 1_3:-9517979 | Msa0102680:CDS |
| TGGAGCTTTGTTTGAAAATG+TGG | 0.497538 | 1_3:-9514928 | Msa0102680:three_prime_UTR |
| TATGGAATTATCAATGAAAT+GGG | 0.501349 | 1_3:-9517585 | Msa0102680:CDS |
| AGAACCCCATAATGAATGAT+TGG | 0.503884 | 1_3:-9515013 | Msa0102680:exon |
| AACTTCAATATCAATGTCTA+GGG | 0.503960 | 1_3:+9518593 | None:intergenic |
| ACATAAAGTCTCTCATTGAT+GGG | 0.508044 | 1_3:+9515280 | None:intergenic |
| ACTTAGTTAGTACTAGTAGT+AGG | 0.508370 | 1_3:-9518618 | Msa0102680:five_prime_UTR |
| ATAAGTGCATCCTCAAAGTT+AGG | 0.515045 | 1_3:-9515250 | Msa0102680:CDS |
| ATTTGCACCTGTAAGGCCTT+AGG | 0.516595 | 1_3:+9516820 | None:intergenic |
| TGGTCTTTACAGGATTGTCC+AGG | 0.529396 | 1_3:-9517139 | Msa0102680:intron |
| AATTATCAATGAAATGGGCT+GGG | 0.534000 | 1_3:-9517580 | Msa0102680:CDS |
| AACATTTCAATTTACGCTAG+AGG | 0.535589 | 1_3:-9515308 | Msa0102680:CDS |
| AACAATGATACATACTGTGA+TGG | 0.538427 | 1_3:+9516790 | None:intergenic |
| AGATTCAAATTGAGCTTCAG+TGG | 0.538926 | 1_3:-9515036 | Msa0102680:CDS |
| CAATATTTATGTGTCTCTCA+TGG | 0.544537 | 1_3:-9517310 | Msa0102680:CDS |
| CTTTCAATCAATAGATGTCA+AGG | 0.552952 | 1_3:-9518478 | Msa0102680:intron |
| ACAAGAACTTGAATCCAGAA+TGG | 0.555590 | 1_3:-9516537 | Msa0102680:CDS |
| TTTGGAAAGGCTGAGAAGAT+GGG | 0.557070 | 1_3:-9516109 | Msa0102680:CDS |
| AACTTCCATGTTACATGCAT+AGG | 0.557803 | 1_3:+9514951 | None:intergenic |
| TTGGCGAAACAAGGAAAACT+AGG | 0.559504 | 1_3:+9517330 | None:intergenic |
| GAATTCAGAAGACACAGAAA+AGG | 0.566484 | 1_3:-9515921 | Msa0102680:CDS |
| TTAGCTTCTTGCTCAACCAA+AGG | 0.569279 | 1_3:+9518157 | None:intergenic |
| AAAAGCAAACCACCACTAGC+AGG | 0.570645 | 1_3:+9515884 | None:intergenic |
| TCAACCAAAGGAGTAAATGT+AGG | 0.571099 | 1_3:+9518169 | None:intergenic |
| TATATACCTTGAAAAGTTGG+TGG | 0.574416 | 1_3:+9517735 | None:intergenic |
| AGAAGACACAGAAAAGGCTC+CGG | 0.576031 | 1_3:-9515915 | Msa0102680:CDS |
| GGTGGTTAACTAGTTTGGAA+AGG | 0.576754 | 1_3:-9516122 | Msa0102680:intron |
| GAATTTGAAGAACTTAACTT+GGG | 0.579840 | 1_3:-9517765 | Msa0102680:CDS |
| CAAGGAAAACTAGGAACCAA+AGG | 0.582613 | 1_3:+9517339 | None:intergenic |
| CTGACCAATCATTCATTATG+GGG | 0.585607 | 1_3:+9515009 | None:intergenic |
| GTTAGGCCTGCTGCATCCAA+AGG | 0.591098 | 1_3:-9515233 | Msa0102680:intron |
| CCACACAAGAAGTACTACTC+TGG | 0.593938 | 1_3:-9518678 | Msa0102680:five_prime_UTR |
| CCAGAGTAGTACTTCTTGTG+TGG | 0.597948 | 1_3:+9518678 | None:intergenic |
| GTCACGTGGAGAGCTTATTG+TGG | 0.600730 | 1_3:-9515984 | Msa0102680:CDS |
| TTTAATCCAAAATCAACATG+TGG | 0.608108 | 1_3:+9517192 | None:intergenic |
| GACACAGAAAAGGCTCCGGA+AGG | 0.610551 | 1_3:-9515911 | Msa0102680:CDS |
| ACCACACAAATCCGTTTGCG+CGG | 0.615343 | 1_3:-9515823 | Msa0102680:CDS |
| CATAAAGTCTCTCATTGATG+GGG | 0.616421 | 1_3:+9515281 | None:intergenic |
| ACATAAATATTGGCGAAACA+AGG | 0.620390 | 1_3:+9517321 | None:intergenic |
| TCAGGAAACTCTTGGATACG+TGG | 0.624912 | 1_3:-9515134 | Msa0102680:intron |
| CCGGAAGGAACACCTGCTAG+TGG | 0.626646 | 1_3:-9515896 | Msa0102680:CDS |
| ATAAAGTCTCTCATTGATGG+GGG | 0.628586 | 1_3:+9515282 | None:intergenic |
| GCGGCTTATATTTAAAGGCG+AGG | 0.630495 | 1_3:-9515804 | Msa0102680:CDS |
| GTACTCCTATGCATGTAACA+TGG | 0.631222 | 1_3:-9514956 | Msa0102680:three_prime_UTR |
| AGAAAGAAAGATATAATGGG+AGG | 0.645260 | 1_3:-9516628 | Msa0102680:CDS |
| TATGTGGCCTTATTTGAACA+AGG | 0.651291 | 1_3:-9517963 | Msa0102680:intron |
| CCTGAGAATGAGAAGTCACG+TGG | 0.651349 | 1_3:-9515998 | Msa0102680:CDS |
| TTGGTCAGTAGTAAATAGGA+TGG | 0.653068 | 1_3:-9514994 | Msa0102680:three_prime_UTR |
| GAAGGAACACCTGCTAGTGG+TGG | 0.656477 | 1_3:-9515893 | Msa0102680:CDS |
| ATGGAATGAAGAGTTTAATG+TGG | 0.658297 | 1_3:-9516518 | Msa0102680:CDS |
| TGGACAATCCTGTAAAGACC+AGG | 0.661769 | 1_3:+9517141 | None:intergenic |
| ATAGGAGTACAAACTTACAA+TGG | 0.677642 | 1_3:+9514969 | None:intergenic |
| GCCGCGCAAACGGATTTGTG+TGG | 0.677878 | 1_3:+9515822 | None:intergenic |
| AAAGGCTTCAACATTATGCG+CGG | 0.685990 | 1_3:+9517357 | None:intergenic |
| TAAAGTCTCTCATTGATGGG+GGG | 0.690358 | 1_3:+9515283 | None:intergenic |
| CCTAATATATGCAAGATCTG+GGG | 0.695408 | 1_3:+9514753 | None:intergenic |
| AAATTAGAAAAGAAAAGACA+AGG | 0.696021 | 1_3:+9518735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAACTAAAATATA+AGG | + | chr1_3:9515144-9515163 | None:intergenic | 10.0% |
| !! | TTCTTGATATATTAAAAATA+TGG | - | chr1_3:9515160-9515179 | Msa0102680:intron | 10.0% |
| !!! | ATTGATTTTCAAAATTTTAT+TGG | - | chr1_3:9515454-9515473 | Msa0102680:intron | 10.0% |
| !! | TATAACATAACATTATAATT+AGG | - | chr1_3:9516625-9516644 | Msa0102680:CDS | 10.0% |
| !!! | AAAATTTTTAAAAAAGTTGA+GGG | - | chr1_3:9517080-9517099 | Msa0102680:intron | 10.0% |
| !! | AAGAATAATAATAACATACA+CGG | + | chr1_3:9515301-9515320 | None:intergenic | 15.0% |
| !! | TCAAATATAAACAAAAAAAG+CGG | - | chr1_3:9515886-9515905 | Msa0102680:CDS | 15.0% |
| !! | TTATGTTATAAACTCATAAA+GGG | + | chr1_3:9516615-9516634 | None:intergenic | 15.0% |
| !!! | CAAAATTTTTAAAAAAGTTG+AGG | - | chr1_3:9517079-9517098 | Msa0102680:intron | 15.0% |
| !!! | AAATTTTTAAAAAAGTTGAG+GGG | - | chr1_3:9517081-9517100 | Msa0102680:intron | 15.0% |
| !! | TAATATATAGAAGAATTAGA+TGG | + | chr1_3:9517660-9517679 | None:intergenic | 15.0% |
| !! | TAAAGTAAGTATAGATTAAA+AGG | + | chr1_3:9517911-9517930 | None:intergenic | 15.0% |
| !!! | TTCCAAATCATAATTTTTTT+TGG | - | chr1_3:9518584-9518603 | Msa0102680:exon | 15.0% |
| !! | AAATTAGAAAAGAAAAGACA+AGG | + | chr1_3:9514643-9514662 | None:intergenic | 20.0% |
| !!! | AACTATACTACTTTTTTAGA+GGG | + | chr1_3:9515336-9515355 | None:intergenic | 20.0% |
| !!! | AAACTATACTACTTTTTTAG+AGG | + | chr1_3:9515337-9515356 | None:intergenic | 20.0% |
| !! | CTGCAACAATATTATATATT+TGG | + | chr1_3:9515733-9515752 | None:intergenic | 20.0% |
| !! | CAAATATATAATATTGTTGC+AGG | - | chr1_3:9515731-9515750 | Msa0102680:intron | 20.0% |
| !! | TTATGGAATTATCAATGAAA+TGG | - | chr1_3:9515789-9515808 | Msa0102680:intron | 20.0% |
| !! | TATGGAATTATCAATGAAAT+GGG | - | chr1_3:9515790-9515809 | Msa0102680:CDS | 20.0% |
| !!! | TTTTTGTTTATATTTGAGTC+CGG | + | chr1_3:9515883-9515902 | None:intergenic | 20.0% |
| !!! | TTCATTTTCTGTTGTTAAAA+AGG | + | chr1_3:9515940-9515959 | None:intergenic | 20.0% |
| !! | CAAGAATAATATTAATGACA+TGG | + | chr1_3:9516286-9516305 | None:intergenic | 20.0% |
| !! | TACAAAAAAGATTTAGTGAT+CGG | - | chr1_3:9516312-9516331 | Msa0102680:intron | 20.0% |
| !!! | TTTAGCGATATTTTTCAAAT+CGG | - | chr1_3:9516384-9516403 | Msa0102680:intron | 20.0% |
| !! | GTTATGTTATAAACTCATAA+AGG | + | chr1_3:9516616-9516635 | None:intergenic | 20.0% |
| !! | TAATTAGGTGTTAATTAGAT+TGG | - | chr1_3:9516640-9516659 | Msa0102680:CDS | 20.0% |
| !! | CTTAGAAAGAAAGATATAAT+GGG | - | chr1_3:9516744-9516763 | Msa0102680:intron | 20.0% |
| !! | TAATGCTTAATGTTTATGAT+TGG | - | chr1_3:9516907-9516926 | Msa0102680:intron | 20.0% |
| !! | AATGCTTAATGTTTATGATT+GGG | - | chr1_3:9516908-9516927 | Msa0102680:intron | 20.0% |
| !!! | AATTTAAGAGTAAGTAGTTT+TGG | + | chr1_3:9517332-9517351 | None:intergenic | 20.0% |
| !! | TTAATCTATACTTACTTTAG+AGG | - | chr1_3:9517912-9517931 | Msa0102680:intron | 20.0% |
| !!! | ATACATAGTTTTATGTCTTA+TGG | - | chr1_3:9518184-9518203 | Msa0102680:intron | 20.0% |
| !!! | AATTTGAATCTTTCCATTTT+TGG | + | chr1_3:9518330-9518349 | None:intergenic | 20.0% |
| !! | TACTCATGAAAAAAGATAAA+AGG | - | chr1_3:9518504-9518523 | Msa0102680:CDS | 20.0% |
| !! | CACCAAAAAAAATTATGATT+TGG | + | chr1_3:9518589-9518608 | None:intergenic | 20.0% |
| !!! | ATCATAATTTTTTTTGGTGT+CGG | - | chr1_3:9518590-9518609 | Msa0102680:five_prime_UTR | 20.0% |
| ! | AGTTTCTTTCATATCAAAAG+TGG | + | chr1_3:9514740-9514759 | None:intergenic | 25.0% |
| ! | AACTTCAATATCAATGTCTA+GGG | + | chr1_3:9514785-9514804 | None:intergenic | 25.0% |
| !!! | AGTACTATAGCTAGTTTTTT+AGG | - | chr1_3:9514820-9514839 | Msa0102680:three_prime_UTR | 25.0% |
| !!! | ATAGCTAGTTTTTTAGGATT+TGG | - | chr1_3:9514826-9514845 | Msa0102680:three_prime_UTR | 25.0% |
| !!! | AGTTTTTTAGGATTTGGAAT+TGG | - | chr1_3:9514832-9514851 | Msa0102680:three_prime_UTR | 25.0% |
| ! | TAAAGTTGTGATCTGTAAAA+AGG | - | chr1_3:9514982-9515001 | Msa0102680:three_prime_UTR | 25.0% |
| !!! | TCTGGATTTTTTATCCATAA+GGG | + | chr1_3:9515272-9515291 | None:intergenic | 25.0% |
| !!! | ATCTGGATTTTTTATCCATA+AGG | + | chr1_3:9515273-9515292 | None:intergenic | 25.0% |
| !!! | ATAAATTTGTTGAGTGTATG+TGG | - | chr1_3:9515396-9515415 | Msa0102680:intron | 25.0% |
| !! | TATGGTTAGTACAACTATTT+TGG | - | chr1_3:9515493-9515512 | Msa0102680:intron | 25.0% |
| !!! | TTTTGGTTGAATGTTGTTAT+AGG | - | chr1_3:9515510-9515529 | Msa0102680:intron | 25.0% |
| !! | ACTGAATCAATTTTGTACTT+TGG | + | chr1_3:9515589-9515608 | None:intergenic | 25.0% |
| ! | TGAATTTGAAGAACTTAACT+TGG | - | chr1_3:9515609-9515628 | Msa0102680:intron | 25.0% |
| ! | GAATTTGAAGAACTTAACTT+GGG | - | chr1_3:9515610-9515629 | Msa0102680:intron | 25.0% |
| ! | CTATATATACCTTGAAAAGT+TGG | + | chr1_3:9515646-9515665 | None:intergenic | 25.0% |
| ! | TGATGAAAAGGAATTGATTA+TGG | - | chr1_3:9515772-9515791 | Msa0102680:intron | 25.0% |
| ! | TTAACTGCAACTATAATGTT+AGG | + | chr1_3:9515824-9515843 | None:intergenic | 25.0% |
| ! | AAAAGTCTTTAAATGATTGC+AGG | - | chr1_3:9515969-9515988 | Msa0102680:CDS | 25.0% |
| ! | TTTAATCCAAAATCAACATG+TGG | + | chr1_3:9516186-9516205 | None:intergenic | 25.0% |
| !! | GATTTTGGATTAAAACTACT+TGG | - | chr1_3:9516192-9516211 | Msa0102680:intron | 25.0% |
| ! | ATAGACCAAAATTGACAAAT+TGG | - | chr1_3:9516338-9516357 | Msa0102680:intron | 25.0% |
| ! | TCAGGAAATTATAAAAGATC+AGG | - | chr1_3:9516512-9516531 | Msa0102680:CDS | 25.0% |
| !!! | TTAGATTGGCTAATTTTACT+TGG | - | chr1_3:9516654-9516673 | Msa0102680:CDS | 25.0% |
| !!! | TTTTACTTGGTTAATTTGTC+AGG | - | chr1_3:9516667-9516686 | Msa0102680:CDS | 25.0% |
| !!! | TTTACTTGGTTAATTTGTCA+GGG | - | chr1_3:9516668-9516687 | Msa0102680:CDS | 25.0% |
| ! | GCTTAGAAAGAAAGATATAA+TGG | - | chr1_3:9516743-9516762 | Msa0102680:intron | 25.0% |
| !! | TGAGTTTAAGTTTCACATAA+GGG | + | chr1_3:9516779-9516798 | None:intergenic | 25.0% |
| !! | TTGAGTTTAAGTTTCACATA+AGG | + | chr1_3:9516780-9516799 | None:intergenic | 25.0% |
| ! | ATGCAAATTTAGACTAAAGT+TGG | - | chr1_3:9516953-9516972 | Msa0102680:intron | 25.0% |
| !!! | GTGAATGTTTTGGTTAAAAA+TGG | - | chr1_3:9517021-9517040 | Msa0102680:intron | 25.0% |
| !! | AAAGCATTTAAAATCTCTTC+TGG | + | chr1_3:9517049-9517068 | None:intergenic | 25.0% |
| !! | GAAGAGATTTTAAATGCTTT+TGG | - | chr1_3:9517049-9517068 | Msa0102680:intron | 25.0% |
| !! | AAGTTTTCAAAATTGCAAAC+TGG | + | chr1_3:9517107-9517126 | None:intergenic | 25.0% |
| !! | GAAATTTAAAATTTGCAGAC+TGG | + | chr1_3:9517136-9517155 | None:intergenic | 25.0% |
| ! | TTGCTTGATTAACATTCTAA+GGG | + | chr1_3:9517170-9517189 | None:intergenic | 25.0% |
| ! | ATTGCTTGATTAACATTCTA+AGG | + | chr1_3:9517171-9517190 | None:intergenic | 25.0% |
| ! | CATGCTTGAAAATATGTTAT+AGG | + | chr1_3:9517218-9517237 | None:intergenic | 25.0% |
| !! | AGTTATGTACAAACCTTTTA+AGG | - | chr1_3:9517415-9517434 | Msa0102680:intron | 25.0% |
| ! | GATCTGATAAAATAATACCT+TGG | + | chr1_3:9517606-9517625 | None:intergenic | 25.0% |
| ! | GAAAGTCAACAAATCATAAT+CGG | + | chr1_3:9517687-9517706 | None:intergenic | 25.0% |
| !! | TCTAAAATATGTAACTGCTT+TGG | - | chr1_3:9517800-9517819 | Msa0102680:CDS | 25.0% |
| ! | AAAAGGAAGAAATCAATAGT+TGG | + | chr1_3:9517894-9517913 | None:intergenic | 25.0% |
| ! | AATGGTTAAATCTCATTGAA+AGG | + | chr1_3:9517992-9518011 | None:intergenic | 25.0% |
| !!! | GAGATTTAACCATTGTTTTA+TGG | - | chr1_3:9517998-9518017 | Msa0102680:intron | 25.0% |
| !!! | TTAATACCTTGTTTTGAATC+AGG | - | chr1_3:9518223-9518242 | Msa0102680:intron | 25.0% |
| !!! | TCATAATTTTTTTTGGTGTC+GGG | - | chr1_3:9518591-9518610 | Msa0102680:five_prime_UTR | 25.0% |
| ! | AAACTGAATAAATCAATGCT+TGG | - | chr1_3:9518652-9518671 | Msa0102680:five_prime_UTR | 25.0% |
| ACTTAGTTAGTACTAGTAGT+AGG | - | chr1_3:9514757-9514776 | Msa0102680:three_prime_UTR | 30.0% | |
| CAACTTCAATATCAATGTCT+AGG | + | chr1_3:9514786-9514805 | None:intergenic | 30.0% | |
| CTTTCAATCAATAGATGTCA+AGG | - | chr1_3:9514897-9514916 | Msa0102680:three_prime_UTR | 30.0% | |
| GGCATGTTTATTATGATTTC+AGG | - | chr1_3:9515181-9515200 | Msa0102680:intron | 30.0% | |
| !! | TTTATCCATAAGGGTATTTC+TGG | + | chr1_3:9515263-9515282 | None:intergenic | 30.0% |
| TACCATACCTTGTTCAAATA+AGG | + | chr1_3:9515422-9515441 | None:intergenic | 30.0% | |
| ! | GGAATTTGTTCAGCAATAAT+AGG | + | chr1_3:9515568-9515587 | None:intergenic | 30.0% |
| TATATACCTTGAAAAGTTGG+TGG | + | chr1_3:9515643-9515662 | None:intergenic | 30.0% | |
| ! | AATTATCAATGAAATGGGCT+GGG | - | chr1_3:9515795-9515814 | Msa0102680:CDS | 30.0% |
| ! | ATAGTTGCAGTTAAAGCATT+TGG | - | chr1_3:9515830-9515849 | Msa0102680:CDS | 30.0% |
| !! | TTAAAAAGGTGCATCGATTA+CGG | + | chr1_3:9515926-9515945 | None:intergenic | 30.0% |
| ACATAAATATTGGCGAAACA+AGG | + | chr1_3:9516057-9516076 | None:intergenic | 30.0% | |
| CATGAGAGACACATAAATAT+TGG | + | chr1_3:9516067-9516086 | None:intergenic | 30.0% | |
| CAATATTTATGTGTCTCTCA+TGG | - | chr1_3:9516065-9516084 | Msa0102680:CDS | 30.0% | |
| CATTTGTTCATCACAATGTT+AGG | + | chr1_3:9516122-9516141 | None:intergenic | 30.0% | |
| ! | AGTGACCAATTTGTCAATTT+TGG | + | chr1_3:9516346-9516365 | None:intergenic | 30.0% |
| AGGTTGCAAAAATGTATTTG+TGG | - | chr1_3:9516532-9516551 | Msa0102680:CDS | 30.0% | |
| AAAAATGTATTTGTGGCCTA+AGG | - | chr1_3:9516539-9516558 | Msa0102680:CDS | 30.0% | |
| AACAATGATACATACTGTGA+TGG | + | chr1_3:9516588-9516607 | None:intergenic | 30.0% | |
| !!! | AATTCCAACTGGTTTTTTCA+TGG | + | chr1_3:9516694-9516713 | None:intergenic | 30.0% |
| ! | AGAAAGAAAGATATAATGGG+AGG | - | chr1_3:9516747-9516766 | Msa0102680:intron | 30.0% |
| TTAAACTCTTCATTCCATTC+TGG | + | chr1_3:9516855-9516874 | None:intergenic | 30.0% | |
| ATGGAATGAAGAGTTTAATG+TGG | - | chr1_3:9516857-9516876 | Msa0102680:CDS | 30.0% | |
| !!! | AGCATTAAGTTTTGAGATTC+TGG | + | chr1_3:9516894-9516913 | None:intergenic | 30.0% |
| TAATGTTTATGATTGGGAAC+AGG | - | chr1_3:9516914-9516933 | Msa0102680:intron | 30.0% | |
| ! | AGCATGTTACTTATTTCCTA+TGG | - | chr1_3:9517232-9517251 | Msa0102680:intron | 30.0% |
| ! | ATGTTACTTATTTCCTATGG+TGG | - | chr1_3:9517235-9517254 | Msa0102680:intron | 30.0% |
| !!! | GTAAGTAGTTTTGGTTCATT+TGG | + | chr1_3:9517323-9517342 | None:intergenic | 30.0% |
| GATAACTCATCATCCTTAAA+AGG | + | chr1_3:9517431-9517450 | None:intergenic | 30.0% | |
| ACTTTCGATTTATTGCTATC+AGG | - | chr1_3:9517701-9517720 | Msa0102680:intron | 30.0% | |
| ACTAAGAAATAGATGACAAG+TGG | + | chr1_3:9517732-9517751 | None:intergenic | 30.0% | |
| !! | TCAAACAAACTCTAAAACAC+CGG | + | chr1_3:9517958-9517977 | None:intergenic | 30.0% |
| GAAAAATAGAGATCCAAGAT+GGG | - | chr1_3:9518040-9518059 | Msa0102680:intron | 30.0% | |
| AAAAATAGAGATCCAAGATG+GGG | - | chr1_3:9518041-9518060 | Msa0102680:intron | 30.0% | |
| AACATTTCAATTTACGCTAG+AGG | - | chr1_3:9518067-9518086 | Msa0102680:intron | 30.0% | |
| ACATAAAGTCTCTCATTGAT+GGG | + | chr1_3:9518098-9518117 | None:intergenic | 30.0% | |
| AACATAAAGTCTCTCATTGA+TGG | + | chr1_3:9518099-9518118 | None:intergenic | 30.0% | |
| TTGATCTTTAGTGTTACCTT+TGG | + | chr1_3:9518161-9518180 | None:intergenic | 30.0% | |
| !! | CATCTTATTGACTCCAAAAA+TGG | - | chr1_3:9518314-9518333 | Msa0102680:intron | 30.0% |
| ACTGACCAATCATTCATTAT+GGG | + | chr1_3:9518370-9518389 | None:intergenic | 30.0% | |
| TACTGACCAATCATTCATTA+TGG | + | chr1_3:9518371-9518390 | None:intergenic | 30.0% | |
| ! | ATGATTGGTCAGTAGTAAAT+AGG | - | chr1_3:9518377-9518396 | Msa0102680:intron | 30.0% |
| ! | ATAGGAGTACAAACTTACAA+TGG | + | chr1_3:9518409-9518428 | None:intergenic | 30.0% |
| !!! | CATAATTTTTTTTGGTGTCG+GGG | - | chr1_3:9518592-9518611 | Msa0102680:five_prime_UTR | 30.0% |
| TCCTAATATATGCAAGATCT+GGG | + | chr1_3:9518626-9518645 | None:intergenic | 30.0% | |
| ATATGAGACAGTGTACTATT+TGG | - | chr1_3:9518688-9518707 | Msa0102680:five_prime_UTR | 30.0% | |
| TCGCAAACAGAAAATCTTAT+TGG | + | chr1_3:9518778-9518797 | None:intergenic | 30.0% | |
| ! | AGTACTACTCTGGTTTAGTT+TGG | - | chr1_3:9514707-9514726 | Msa0102680:three_prime_UTR | 35.0% |
| ! | TTTGGAATTGGAACTTCACT+TGG | - | chr1_3:9514844-9514863 | Msa0102680:three_prime_UTR | 35.0% |
| ACTTCACTTGGATTGTTGAT+TGG | - | chr1_3:9514856-9514875 | Msa0102680:three_prime_UTR | 35.0% | |
| TCAACCAAAGGAGTAAATGT+AGG | + | chr1_3:9515209-9515228 | None:intergenic | 35.0% | |
| TAACATACACGGTCATAATC+TGG | + | chr1_3:9515290-9515309 | None:intergenic | 35.0% | |
| ! | TTTCTTGTTTGCAGCTTGAT+TGG | - | chr1_3:9515369-9515388 | Msa0102680:intron | 35.0% |
| !! | TATGTGGCCTTATTTGAACA+AGG | - | chr1_3:9515412-9515431 | Msa0102680:intron | 35.0% |
| ! | GGCATCTATGAGATTTTGTA+TGG | - | chr1_3:9515475-9515494 | Msa0102680:intron | 35.0% |
| !! | AGTGTATAGCACTGATGAAA+AGG | - | chr1_3:9515760-9515779 | Msa0102680:intron | 35.0% |
| GAATTATCAATGAAATGGGC+TGG | - | chr1_3:9515794-9515813 | Msa0102680:CDS | 35.0% | |
| AAAAAAGCGGCCATATTTAG+CGG | - | chr1_3:9515899-9515918 | Msa0102680:CDS | 35.0% | |
| TTATGTGTCTCTCATGGAAA+AGG | - | chr1_3:9516071-9516090 | Msa0102680:CDS | 35.0% | |
| TAGCTATAGTATATGCTACC+TGG | + | chr1_3:9516257-9516276 | None:intergenic | 35.0% | |
| !! | ATATCCTCTCACTTGTTTTC+AGG | - | chr1_3:9516494-9516513 | Msa0102680:CDS | 35.0% |
| ATTTCCTGAAAACAAGTGAG+AGG | + | chr1_3:9516501-9516520 | None:intergenic | 35.0% | |
| ATCCATTATTTGCACCTGTA+AGG | + | chr1_3:9516565-9516584 | None:intergenic | 35.0% | |
| TTCACATGAAGAATTCCAAC+TGG | + | chr1_3:9516705-9516724 | None:intergenic | 35.0% | |
| ACAAGAACTTGAATCCAGAA+TGG | - | chr1_3:9516838-9516857 | Msa0102680:CDS | 35.0% | |
| TTGGATGTAAGATTATCAGC+AGG | - | chr1_3:9516972-9516991 | Msa0102680:intron | 35.0% | |
| !!! | GGAAACTTTTAGAGTGTGTT+TGG | - | chr1_3:9516993-9517012 | Msa0102680:intron | 35.0% |
| !!! | ACTTTTAGAGTGTGTTTGGA+TGG | - | chr1_3:9516997-9517016 | Msa0102680:intron | 35.0% |
| ! | TAACATTCTAAGGGTGTGTT+TGG | + | chr1_3:9517161-9517180 | None:intergenic | 35.0% |
| ! | TTTGGTGTAAGCTCTTTCAA+TGG | + | chr1_3:9517305-9517324 | None:intergenic | 35.0% |
| TTCTCATTCTCAGGATCATT+AGG | + | chr1_3:9517371-9517390 | None:intergenic | 35.0% | |
| GAATTCAGAAGACACAGAAA+AGG | - | chr1_3:9517454-9517473 | Msa0102680:intron | 35.0% | |
| TTAAATATAAGCCGCGCAAA+CGG | + | chr1_3:9517566-9517585 | None:intergenic | 35.0% | |
| TTTGCGCGGCTTATATTTAA+AGG | - | chr1_3:9517566-9517585 | Msa0102680:CDS | 35.0% | |
| ! | TAACTGCTTTGGATCATTGA+TGG | - | chr1_3:9517811-9517830 | Msa0102680:CDS | 35.0% |
| TAGATACCAGTTTACTTGTG+CGG | - | chr1_3:9517846-9517865 | Msa0102680:CDS | 35.0% | |
| GCACAATTGCCATAAAACAA+TGG | + | chr1_3:9518010-9518029 | None:intergenic | 35.0% | |
| GGAAAAATAGAGATCCAAGA+TGG | - | chr1_3:9518039-9518058 | Msa0102680:intron | 35.0% | |
| ATAAAGTCTCTCATTGATGG+GGG | + | chr1_3:9518096-9518115 | None:intergenic | 35.0% | |
| CATAAAGTCTCTCATTGATG+GGG | + | chr1_3:9518097-9518116 | None:intergenic | 35.0% | |
| ATAAGTGCATCCTCAAAGTT+AGG | - | chr1_3:9518125-9518144 | Msa0102680:CDS | 35.0% | |
| GAGTTTCCTGATTCAAAACA+AGG | + | chr1_3:9518232-9518251 | None:intergenic | 35.0% | |
| !! | GTTTTGAATCAGGAAACTCT+TGG | - | chr1_3:9518233-9518252 | Msa0102680:intron | 35.0% |
| AGATTCAAATTGAGCTTCAG+TGG | - | chr1_3:9518339-9518358 | Msa0102680:intron | 35.0% | |
| AGAACCCCATAATGAATGAT+TGG | - | chr1_3:9518362-9518381 | Msa0102680:intron | 35.0% | |
| CTGACCAATCATTCATTATG+GGG | + | chr1_3:9518369-9518388 | None:intergenic | 35.0% | |
| TTGGTCAGTAGTAAATAGGA+TGG | - | chr1_3:9518381-9518400 | Msa0102680:intron | 35.0% | |
| AACTTCCATGTTACATGCAT+AGG | + | chr1_3:9518427-9518446 | None:intergenic | 35.0% | |
| ATGCATGTAACATGGAAGTT+TGG | - | chr1_3:9518427-9518446 | Msa0102680:intron | 35.0% | |
| !! | TGGAGCTTTGTTTGAAAATG+TGG | - | chr1_3:9518447-9518466 | Msa0102680:intron | 35.0% |
| CCTAATATATGCAAGATCTG+GGG | + | chr1_3:9518625-9518644 | None:intergenic | 35.0% | |
| CTCCTAATATATGCAAGATC+TGG | + | chr1_3:9518627-9518646 | None:intergenic | 35.0% | |
| GGATCCTACATTTACTCCTT+TGG | - | chr1_3:9515202-9515221 | Msa0102680:intron | 40.0% | |
| TTAGCTTCTTGCTCAACCAA+AGG | + | chr1_3:9515221-9515240 | None:intergenic | 40.0% | |
| TGCTTCCAGAAATACCCTTA+TGG | - | chr1_3:9515255-9515274 | Msa0102680:CDS | 40.0% | |
| !! | GGCCTTATTTGAACAAGGTA+TGG | - | chr1_3:9515417-9515436 | Msa0102680:intron | 40.0% |
| CAACAGTTCAGGTATTTCTC+CGG | - | chr1_3:9515861-9515880 | Msa0102680:CDS | 40.0% | |
| AAAGGCTTCAACATTATGCG+CGG | + | chr1_3:9516021-9516040 | None:intergenic | 40.0% | |
| CAAGGAAAACTAGGAACCAA+AGG | + | chr1_3:9516039-9516058 | None:intergenic | 40.0% | |
| TTGGCGAAACAAGGAAAACT+AGG | + | chr1_3:9516048-9516067 | None:intergenic | 40.0% | |
| !!! | TTGCAGCCACATGTTGATTT+TGG | - | chr1_3:9516177-9516196 | Msa0102680:intron | 40.0% |
| ! | TGTCTATTCCTGGTCTTTAC+AGG | - | chr1_3:9516226-9516245 | Msa0102680:intron | 40.0% |
| ! | TTTGGATGGCGTGAATGTTT+TGG | - | chr1_3:9517011-9517030 | Msa0102680:intron | 40.0% |
| CCAAACTAGTTAACCACCAT+AGG | + | chr1_3:9517251-9517270 | None:intergenic | 40.0% | |
| CCTATGGTGGTTAACTAGTT+TGG | - | chr1_3:9517248-9517267 | Msa0102680:intron | 40.0% | |
| ! | GGTGGTTAACTAGTTTGGAA+AGG | - | chr1_3:9517253-9517272 | Msa0102680:intron | 40.0% |
| TTTGGAAAGGCTGAGAAGAT+GGG | - | chr1_3:9517266-9517285 | Msa0102680:intron | 40.0% | |
| CTTCAACATCTTCAGCTTCA+TGG | + | chr1_3:9517526-9517545 | None:intergenic | 40.0% | |
| CATGAAGCTGAAGATGTTGA+AGG | - | chr1_3:9517524-9517543 | Msa0102680:intron | 40.0% | |
| TGAAATGTTTCACCCCATCT+TGG | + | chr1_3:9518056-9518075 | None:intergenic | 40.0% | |
| TAAAGTCTCTCATTGATGGG+GGG | + | chr1_3:9518095-9518114 | None:intergenic | 40.0% | |
| GTACTCCTATGCATGTAACA+TGG | - | chr1_3:9518419-9518438 | Msa0102680:intron | 40.0% | |
| CCCCAGATCTTGCATATATT+AGG | - | chr1_3:9518622-9518641 | Msa0102680:five_prime_UTR | 40.0% | |
| CCAGAGTAGTACTTCTTGTG+TGG | + | chr1_3:9514700-9514719 | None:intergenic | 45.0% | |
| !! | CCACACAAGAAGTACTACTC+TGG | - | chr1_3:9514697-9514716 | Msa0102680:three_prime_UTR | 45.0% |
| ! | TCTCTGCCACCAACTTTTCA+AGG | - | chr1_3:9515634-9515653 | Msa0102680:intron | 45.0% |
| CGATTACGGTCCGCTAAATA+TGG | + | chr1_3:9515912-9515931 | None:intergenic | 45.0% | |
| GCGCATAATGTTGAAGCCTT+TGG | - | chr1_3:9516020-9516039 | Msa0102680:CDS | 45.0% | |
| GCAGATGCAATGTCTATTCC+TGG | - | chr1_3:9516216-9516235 | Msa0102680:intron | 45.0% | |
| TGGACAATCCTGTAAAGACC+AGG | + | chr1_3:9516237-9516256 | None:intergenic | 45.0% | |
| TGGTCTTTACAGGATTGTCC+AGG | - | chr1_3:9516236-9516255 | Msa0102680:intron | 45.0% | |
| ATTTGCACCTGTAAGGCCTT+AGG | + | chr1_3:9516558-9516577 | None:intergenic | 45.0% | |
| GGCCTTACAGGTGCAAATAA+TGG | - | chr1_3:9516560-9516579 | Msa0102680:CDS | 45.0% | |
| AGGGCCATGAAAAAACCAGT+TGG | - | chr1_3:9516687-9516706 | Msa0102680:CDS | 45.0% | |
| GTTTGGAAAGGCTGAGAAGA+TGG | - | chr1_3:9517265-9517284 | Msa0102680:intron | 45.0% | |
| AGAAGACACAGAAAAGGCTC+CGG | - | chr1_3:9517460-9517479 | Msa0102680:intron | 45.0% | |
| AAAAGCAAACCACCACTAGC+AGG | + | chr1_3:9517494-9517513 | None:intergenic | 45.0% | |
| GCGGCTTATATTTAAAGGCG+AGG | - | chr1_3:9517571-9517590 | Msa0102680:CDS | 45.0% | |
| AGGCGAGGAAAGAAAAACCA+AGG | - | chr1_3:9517586-9517605 | Msa0102680:CDS | 45.0% | |
| AACTTGCCGCACAAGTAAAC+TGG | + | chr1_3:9517855-9517874 | None:intergenic | 45.0% | |
| !! | AAACTCTAAAACACCGGACG+CGG | + | chr1_3:9517952-9517971 | None:intergenic | 45.0% |
| TGGCAATTGTGCAGCATGTA+AGG | - | chr1_3:9518018-9518037 | Msa0102680:intron | 45.0% | |
| TCAGGAAACTCTTGGATACG+TGG | - | chr1_3:9518241-9518260 | Msa0102680:intron | 45.0% | |
| TGGATTGCGAGCAACAGTTC+AGG | - | chr1_3:9515850-9515869 | Msa0102680:CDS | 50.0% | |
| TTTGTGGCCTAAGGCCTTAC+AGG | - | chr1_3:9516548-9516567 | Msa0102680:CDS | 50.0% | |
| CCACGTGACTTCTCATTCTC+AGG | + | chr1_3:9517380-9517399 | None:intergenic | 50.0% | |
| CCTGAGAATGAGAAGTCACG+TGG | - | chr1_3:9517377-9517396 | Msa0102680:CDS | 50.0% | |
| GTCACGTGGAGAGCTTATTG+TGG | - | chr1_3:9517391-9517410 | Msa0102680:intron | 50.0% | |
| ACCACACAAATCCGTTTGCG+CGG | - | chr1_3:9517552-9517571 | Msa0102680:CDS | 50.0% | |
| CTCAAATTCATTGCCGCGTC+CGG | - | chr1_3:9517936-9517955 | Msa0102680:intron | 50.0% | |
| ATGCAGCAGGCCTAACTTTG+AGG | + | chr1_3:9518138-9518157 | None:intergenic | 50.0% | |
| GTGTTACCTTTGGATGCAGC+AGG | + | chr1_3:9518151-9518170 | None:intergenic | 50.0% | |
| GACACAGAAAAGGCTCCGGA+AGG | - | chr1_3:9517464-9517483 | Msa0102680:intron | 55.0% | |
| CCACTAGCAGGTGTTCCTTC+CGG | + | chr1_3:9517482-9517501 | None:intergenic | 55.0% | |
| GAAGGAACACCTGCTAGTGG+TGG | - | chr1_3:9517482-9517501 | Msa0102680:intron | 55.0% | |
| GTTAGGCCTGCTGCATCCAA+AGG | - | chr1_3:9518142-9518161 | Msa0102680:CDS | 55.0% | |
| CCGGAAGGAACACCTGCTAG+TGG | - | chr1_3:9517479-9517498 | Msa0102680:intron | 60.0% | |
| ! | GCCGCGCAAACGGATTTGTG+TGG | + | chr1_3:9517556-9517575 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 9514591 | 9518806 | 9514591 | ID=Msa0102680;Name=Msa0102680 |
| chr1_3 | mRNA | 9514591 | 9518806 | 9514591 | ID=Msa0102680-mRNA-1;Parent=Msa0102680;Name=Msa0102680-mRNA-1;_AED=0.10;_eAED=0.10;_QI=217|1|1|1|1|1|12|433|535 |
| chr1_3 | exon | 9514591 | 9515152 | 9514591 | ID=Msa0102680-mRNA-1:exon:3884;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9515234 | 9515365 | 9515234 | ID=Msa0102680-mRNA-1:exon:3883;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9515790 | 9516131 | 9515790 | ID=Msa0102680-mRNA-1:exon:3882;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9516462 | 9516708 | 9516462 | ID=Msa0102680-mRNA-1:exon:3881;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9516805 | 9516881 | 9516805 | ID=Msa0102680-mRNA-1:exon:3880;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9517140 | 9517214 | 9517140 | ID=Msa0102680-mRNA-1:exon:3879;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9517305 | 9517406 | 9517305 | ID=Msa0102680-mRNA-1:exon:3878;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9517526 | 9517644 | 9517526 | ID=Msa0102680-mRNA-1:exon:3877;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9517742 | 9517865 | 9517742 | ID=Msa0102680-mRNA-1:exon:3876;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9517964 | 9518014 | 9517964 | ID=Msa0102680-mRNA-1:exon:3875;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9518096 | 9518194 | 9518096 | ID=Msa0102680-mRNA-1:exon:3874;Parent=Msa0102680-mRNA-1 |
| chr1_3 | exon | 9518479 | 9518806 | 9518479 | ID=Msa0102680-mRNA-1:exon:3873;Parent=Msa0102680-mRNA-1 |
| chr1_3 | five_prime_UTR | 9518590 | 9518806 | 9518590 | ID=Msa0102680-mRNA-1:five_prime_utr;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9518479 | 9518589 | 9518479 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9518096 | 9518194 | 9518096 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9517964 | 9518014 | 9517964 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9517742 | 9517865 | 9517742 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9517526 | 9517644 | 9517526 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9517305 | 9517406 | 9517305 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9517140 | 9517214 | 9517140 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9516805 | 9516881 | 9516805 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9516462 | 9516708 | 9516462 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9515790 | 9516131 | 9515790 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9515234 | 9515365 | 9515234 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | CDS | 9515024 | 9515152 | 9515024 | ID=Msa0102680-mRNA-1:cds;Parent=Msa0102680-mRNA-1 |
| chr1_3 | three_prime_UTR | 9514591 | 9515023 | 9514591 | ID=Msa0102680-mRNA-1:three_prime_utr;Parent=Msa0102680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
