Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003520 | sp|Q9FWS1|AUL1_ARATH | 57.962 | 314 | 117 | 7 | 1062 | 1368 | 1145 | 1450 | 3.60e-88 | 319 |
| Msa0003520 | sp|Q9FWS1|AUL1_ARATH | 30.752 | 452 | 233 | 21 | 1 | 438 | 1 | 386 | 7.67e-29 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003520 | Msa0146430 | 0.987647 | 5.087272e-171 | -8.615850e-47 |
| Msa0003520 | Msa0689250 | 0.812428 | 4.261285e-51 | -8.615850e-47 |
| Msa0003520 | Msa1014010 | 0.819021 | 1.445177e-52 | -8.615850e-47 |
| Msa0003520 | Msa1043610 | 0.936353 | 1.987961e-97 | -8.615850e-47 |
| Msa0003520 | Msa1093480 | 0.801332 | 9.465488e-49 | -8.615850e-47 |
| Msa0003520 | Msa1361350 | 0.800928 | 1.145054e-48 | -8.615850e-47 |
| Msa0003520 | Msa1374180 | 0.930321 | 1.942907e-93 | -8.615850e-47 |
| Msa0003520 | Msa1382680 | 0.894053 | 3.538588e-75 | -8.615850e-47 |
| Msa0003520 | Msa1400120 | 0.806775 | 6.981772e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003520 | MtrunA17_Chr1g0155381 | 95.918 | 1372 | 48 | 4 | 1 | 1368 | 1 | 1368 | 0.0 | 2684 |
| Msa0003520 | MtrunA17_Chr8g0372931 | 48.705 | 386 | 161 | 9 | 1016 | 1368 | 1058 | 1439 | 7.52e-86 | 308 |
| Msa0003520 | MtrunA17_Chr8g0372931 | 27.295 | 414 | 238 | 17 | 24 | 430 | 28 | 385 | 4.49e-18 | 90.9 |
| Msa0003520 | MtrunA17_Chr8g0384651 | 64.744 | 156 | 55 | 0 | 1212 | 1367 | 756 | 911 | 3.21e-59 | 221 |
| Msa0003520 | MtrunA17_Chr3g0130631 | 64.103 | 156 | 56 | 0 | 1212 | 1367 | 578 | 733 | 6.47e-59 | 217 |
| Msa0003520 | MtrunA17_Chr3g0125121 | 51.337 | 187 | 80 | 3 | 1191 | 1367 | 334 | 519 | 2.09e-52 | 193 |
| Msa0003520 | MtrunA17_Chr3g0141421 | 56.383 | 94 | 41 | 0 | 1272 | 1365 | 596 | 689 | 5.25e-32 | 134 |
| Msa0003520 | MtrunA17_Chr2g0304091 | 53.125 | 96 | 45 | 0 | 1272 | 1367 | 357 | 452 | 9.49e-28 | 118 |
| Msa0003520 | MtrunA17_Chr8g0376701 | 51.042 | 96 | 47 | 0 | 1272 | 1367 | 364 | 459 | 7.95e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003520 | AT1G75310.2 | 58.466 | 313 | 118 | 6 | 1062 | 1368 | 1145 | 1451 | 9.00e-90 | 321 |
| Msa0003520 | AT1G75310.2 | 30.752 | 452 | 233 | 21 | 1 | 438 | 1 | 386 | 7.94e-30 | 129 |
| Msa0003520 | AT1G75310.1 | 57.643 | 314 | 116 | 7 | 1062 | 1368 | 1145 | 1448 | 1.28e-88 | 317 |
| Msa0003520 | AT1G75310.1 | 30.752 | 452 | 233 | 21 | 1 | 438 | 1 | 386 | 7.66e-30 | 129 |
| Msa0003520 | AT4G36520.1 | 49.162 | 358 | 148 | 10 | 1032 | 1368 | 1078 | 1422 | 8.78e-79 | 287 |
| Msa0003520 | AT4G36520.1 | 31.481 | 216 | 104 | 9 | 7 | 181 | 13 | 225 | 6.60e-18 | 90.9 |
| Msa0003520 | AT4G12780.3 | 61.333 | 150 | 58 | 0 | 1218 | 1367 | 726 | 875 | 4.50e-51 | 196 |
| Msa0003520 | AT4G12780.1 | 61.333 | 150 | 58 | 0 | 1218 | 1367 | 753 | 902 | 4.78e-51 | 196 |
| Msa0003520 | AT4G12770.2 | 59.615 | 156 | 62 | 1 | 1212 | 1367 | 733 | 887 | 5.95e-51 | 196 |
| Msa0003520 | AT4G12770.1 | 60.667 | 150 | 59 | 0 | 1218 | 1367 | 740 | 889 | 6.43e-51 | 196 |
| Msa0003520 | AT4G12780.2 | 56.287 | 167 | 56 | 2 | 1218 | 1367 | 726 | 892 | 6.94e-48 | 186 |
| Msa0003520 | AT1G21660.1 | 53.521 | 142 | 66 | 0 | 1226 | 1367 | 380 | 521 | 1.71e-45 | 173 |
| Msa0003520 | AT1G75100.1 | 59.341 | 91 | 37 | 0 | 1274 | 1364 | 556 | 646 | 1.40e-31 | 133 |
| Msa0003520 | AT1G30280.1 | 50.000 | 84 | 41 | 1 | 1278 | 1360 | 361 | 444 | 1.21e-18 | 91.3 |
| Msa0003520 | AT1G30280.2 | 47.253 | 91 | 44 | 3 | 1278 | 1365 | 361 | 450 | 3.08e-16 | 83.6 |
Find 277 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTCTGTAGCTGCTTTA+AGG | 0.107747 | 1_1:-6098920 | Msa0003520:CDS |
| CCCTCGCTGCTGCAGCTTAT+CGG | 0.205621 | 1_1:+6095212 | None:intergenic |
| ACAGCCTGTAACAGATAATT+TGG | 0.210029 | 1_1:-6099081 | Msa0003520:CDS |
| TTGAAATGGTTAAGGAATAT+TGG | 0.215083 | 1_1:-6098410 | Msa0003520:CDS |
| TTATCCAAATTATCTGTTAC+AGG | 0.228191 | 1_1:+6099077 | None:intergenic |
| TTGAGTCAACCGTGTCTTCT+AGG | 0.241410 | 1_1:+6098955 | None:intergenic |
| TTAGTAACTTGAACAGATTC+TGG | 0.251253 | 1_1:+6097289 | None:intergenic |
| AATTATTCCTTGATTAATAA+AGG | 0.263834 | 1_1:+6094543 | None:intergenic |
| TTGCTTTGTTCCATTGCTTC+TGG | 0.266976 | 1_1:+6096430 | None:intergenic |
| GTTAATCAAGGAAGTGAAAA+TGG | 0.268655 | 1_1:-6099560 | Msa0003520:CDS |
| GACTGTTTCTTGACATTATT+AGG | 0.275632 | 1_1:+6099218 | None:intergenic |
| GATTCTACTGGGGTCTTTGA+TGG | 0.278154 | 1_1:-6096258 | Msa0003520:CDS |
| GCAAAGGCTAGTGATTTAAA+TGG | 0.292351 | 1_1:-6097673 | Msa0003520:CDS |
| CTCTCGATGCCGATGTTAAA+AGG | 0.297624 | 1_1:-6095930 | Msa0003520:CDS |
| ATATGACATATTGATCGTTT+TGG | 0.308968 | 1_1:+6099589 | None:intergenic |
| ACTATTGCTGTTAAAGGAAT+TGG | 0.313533 | 1_1:+6095288 | None:intergenic |
| TGAAATGGTTAAGGAATATT+GGG | 0.315628 | 1_1:-6098409 | Msa0003520:CDS |
| TCTCTTCATCGTGGTGAATA+TGG | 0.316778 | 1_1:+6097710 | None:intergenic |
| CTTGGAGTTCTTAGCTTGAT+TGG | 0.316936 | 1_1:+6100654 | None:intergenic |
| ACCTCTTCCTTATGTTTGTC+TGG | 0.323897 | 1_1:+6098564 | None:intergenic |
| TCTGAAGTTCGTGATTCTAC+TGG | 0.332930 | 1_1:-6096270 | Msa0003520:intron |
| CTTACTTTCTCTGTTCTCAT+TGG | 0.337977 | 1_1:+6098663 | None:intergenic |
| TTCAACTTCTCAGTTTCATC+TGG | 0.344128 | 1_1:+6097451 | None:intergenic |
| CTAGTATCAATTTGAAAGTC+AGG | 0.344292 | 1_1:-6098803 | Msa0003520:CDS |
| GTGGTTACTATTGCTGTTAA+AGG | 0.345660 | 1_1:+6095282 | None:intergenic |
| ATCAATTCCCAGCAAAATAA+AGG | 0.348948 | 1_1:-6096912 | Msa0003520:CDS |
| ATTGTATGATCAGATTCTTC+AGG | 0.350719 | 1_1:+6098432 | None:intergenic |
| GGAAGTGAAAATGGAACAAA+TGG | 0.350748 | 1_1:-6099551 | Msa0003520:CDS |
| GAAGGAATGCATCTGGTTCT+TGG | 0.351045 | 1_1:-6097831 | Msa0003520:CDS |
| CCTCGCTGCTGCAGCTTATC+GGG | 0.364311 | 1_1:+6095213 | None:intergenic |
| TCTCAGACAGTGCCCTCTCC+AGG | 0.368364 | 1_1:+6096516 | None:intergenic |
| ATCTGGTTCATAGCTAGAAC+TGG | 0.372127 | 1_1:+6097468 | None:intergenic |
| TTGGCATTCTTCCTGATCAA+TGG | 0.376138 | 1_1:+6098080 | None:intergenic |
| TTTCACCTCCTCTTCTTTGA+AGG | 0.377050 | 1_1:+6096934 | None:intergenic |
| TGCAAGAGAGAGGGCAGCTC+TGG | 0.378359 | 1_1:-6096711 | Msa0003520:CDS |
| TGTCAAGTGTCGCCTGAATC+AGG | 0.382236 | 1_1:+6098277 | None:intergenic |
| CGTTTCGATGCTTTAGGCTT+CGG | 0.382721 | 1_1:+6100438 | None:intergenic |
| CGGTAAGCTTTCTTTACATC+AGG | 0.383896 | 1_1:+6095258 | None:intergenic |
| AAGGCAAACATTTGGAGAAA+TGG | 0.384101 | 1_1:-6098724 | Msa0003520:CDS |
| GAGAAAGTAAGATCAGATAT+CGG | 0.385527 | 1_1:-6098651 | Msa0003520:CDS |
| CTTGAATTTCGCAGATCCTT+GGG | 0.387936 | 1_1:-6095329 | Msa0003520:intron |
| GACTTCTGTTTGACATGATC+AGG | 0.389147 | 1_1:+6098825 | None:intergenic |
| TGGTGAAACAAACCTGATTC+AGG | 0.391490 | 1_1:-6098289 | Msa0003520:CDS |
| ATGAAGTAGGCAAATTTAGA+AGG | 0.391541 | 1_1:-6094666 | Msa0003520:three_prime_UTR |
| CTGCAAGTTTCTTCTGATGT+AGG | 0.393651 | 1_1:-6098693 | Msa0003520:CDS |
| GTCAGTTTCACCAACATTTG+TGG | 0.394233 | 1_1:+6097147 | None:intergenic |
| GATTCCGATTCTCGAACTTC+CGG | 0.394240 | 1_1:-6100574 | Msa0003520:CDS |
| CTGAAGTTCGTGATTCTACT+GGG | 0.396066 | 1_1:-6096269 | Msa0003520:intron |
| ACTTTGAGATGCTTGGCATT+TGG | 0.397058 | 1_1:+6099019 | None:intergenic |
| GCACACAAAGAGTGGCTTTA+CGG | 0.399428 | 1_1:+6095238 | None:intergenic |
| AAATAAGCCTTTATTAATCA+AGG | 0.399742 | 1_1:-6094550 | Msa0003520:three_prime_UTR |
| ACTCACCGTTTCGATGCTTT+AGG | 0.400557 | 1_1:+6100432 | None:intergenic |
| AGGTTAATTACAGAGCCTTT+TGG | 0.402036 | 1_1:+6098180 | None:intergenic |
| ATTAATACAAGGCAAACATT+TGG | 0.403690 | 1_1:-6098732 | Msa0003520:CDS |
| GGAGACAATTTCAATTTGTT+CGG | 0.404035 | 1_1:+6098585 | None:intergenic |
| TTCTAGGTACGTCGGTGAAT+CGG | 0.404391 | 1_1:+6098971 | None:intergenic |
| TTGAGAGCTATTCAGGAACT+TGG | 0.413355 | 1_1:-6098051 | Msa0003520:CDS |
| CAGATCCTTGGGCCCGATAG+TGG | 0.417009 | 1_1:-6095318 | Msa0003520:CDS |
| AGAGGCTCAAATGAAAATAA+AGG | 0.417325 | 1_1:-6098886 | Msa0003520:CDS |
| ATCTGATCATACAATTGAAA+TGG | 0.417927 | 1_1:-6098424 | Msa0003520:CDS |
| ACTTGAATTTCGCAGATCCT+TGG | 0.423963 | 1_1:-6095330 | Msa0003520:intron |
| GCAAAACCAAGATCAGTGTT+TGG | 0.424713 | 1_1:-6097113 | Msa0003520:CDS |
| GACTAAATGGTCCATTGATC+AGG | 0.429201 | 1_1:-6098091 | Msa0003520:CDS |
| GGAGATAAGAGAAGAAGAAC+CGG | 0.431525 | 1_1:-6097506 | Msa0003520:CDS |
| TTCAAACCTCGATTACTCTA+AGG | 0.432981 | 1_1:-6100514 | Msa0003520:CDS |
| AAGAGGTAGAACATTCCTAT+TGG | 0.433303 | 1_1:-6097798 | Msa0003520:CDS |
| TCATACAATTGAAATGGTTA+AGG | 0.433305 | 1_1:-6098418 | Msa0003520:CDS |
| TTCCTTCACTTCCTTTGTCA+CGG | 0.434366 | 1_1:+6096874 | None:intergenic |
| TAAAGACGAGCAGAGCTAAA+TGG | 0.438524 | 1_1:-6099460 | Msa0003520:CDS |
| TACCTTCTGTGACTTACCAT+TGG | 0.438804 | 1_1:+6096850 | None:intergenic |
| TATAGCTTTCCCTCCATTGT+TGG | 0.441602 | 1_1:+6099316 | None:intergenic |
| AAGGAATGCATCTGGTTCTT+GGG | 0.441677 | 1_1:-6097830 | Msa0003520:CDS |
| CTGGATTCTGAGGTGTTGCC+CGG | 0.443227 | 1_1:+6097487 | None:intergenic |
| CCACAGAGTGCATGACCATC+AGG | 0.447760 | 1_1:+6094739 | None:intergenic |
| TCCATTGCAGTCTTCTCAGC+CGG | 0.447833 | 1_1:+6096602 | None:intergenic |
| ATTTGTGGAATCATTGTCAA+TGG | 0.449575 | 1_1:+6097162 | None:intergenic |
| AAAGAATAGAGAAAGAGAAA+AGG | 0.450397 | 1_1:-6096789 | Msa0003520:CDS |
| GATGCACCAACATACTTCTC+TGG | 0.450847 | 1_1:+6096452 | None:intergenic |
| TCAATTAAACAAGTGTAAGC+AGG | 0.451248 | 1_1:+6099497 | None:intergenic |
| TCCTATTCTCTGATGCCTCT+CGG | 0.453315 | 1_1:+6096197 | None:intergenic |
| AGAAAGTAAGATCAGATATC+GGG | 0.453718 | 1_1:-6098650 | Msa0003520:CDS |
| TTTGTTCGGTGCTTCTTGTA+CGG | 0.456160 | 1_1:+6098599 | None:intergenic |
| TTCACCTCCTCTTCTTTGAA+GGG | 0.458847 | 1_1:+6096935 | None:intergenic |
| AATTGGTTGCCAACCACTAT+CGG | 0.462991 | 1_1:+6095305 | None:intergenic |
| AGGTGGGAAATCGTCGATGA+TGG | 0.467613 | 1_1:-6098157 | Msa0003520:CDS |
| GTCGCCGTCGTCATGGAGTT+CGG | 0.468902 | 1_1:-6100762 | Msa0003520:exon |
| TCCGGTGACGGAGTGGCTGT+TGG | 0.468983 | 1_1:+6100707 | None:intergenic |
| GTGATATCACCTTCATTCAA+TGG | 0.473045 | 1_1:-6099614 | Msa0003520:CDS |
| CAGACTTCTGACTTTGATGA+AGG | 0.476599 | 1_1:-6097241 | Msa0003520:CDS |
| AGTTGAAGAAGTTGAGAACA+AGG | 0.478684 | 1_1:-6098220 | Msa0003520:CDS |
| CCCTCATTGTCTAATAGCTC+CGG | 0.479146 | 1_1:+6097934 | None:intergenic |
| CAAAAGTGTCAAGAAGTTGC+TGG | 0.481130 | 1_1:-6098309 | Msa0003520:CDS |
| CCGATAAGCTGCAGCAGCGA+GGG | 0.484078 | 1_1:-6095212 | Msa0003520:CDS |
| CACAGAAGGTAGAGGTGGAT+AGG | 0.484797 | 1_1:-6096838 | Msa0003520:CDS |
| CCAAGATCAGTGTTTGGAAA+AGG | 0.486328 | 1_1:-6097107 | Msa0003520:CDS |
| TTCGGAATCAGTTCTTCAAA+AGG | 0.486473 | 1_1:+6100456 | None:intergenic |
| TCTCGAACTTCCGGAGCTCA+AGG | 0.488088 | 1_1:-6100565 | Msa0003520:CDS |
| TCAAACTGATCTAATTTATG+AGG | 0.490972 | 1_1:-6097527 | Msa0003520:CDS |
| CGAGGGAGCCACACACCCTA+TGG | 0.495109 | 1_1:-6097608 | Msa0003520:CDS |
| CGTCACCGTCGCCGTCGTCA+TGG | 0.497621 | 1_1:-6100769 | Msa0003520:exon |
| TGAGTCTATAGAAATATGTA+TGG | 0.500843 | 1_1:-6097038 | Msa0003520:CDS |
| GCTATTCAGGAACTTGGAAA+TGG | 0.501968 | 1_1:-6098045 | Msa0003520:CDS |
| CTTCATCAAAGTCAGAAGTC+TGG | 0.502637 | 1_1:+6097242 | None:intergenic |
| TGATCTGCAGGATGATATAA+TGG | 0.503126 | 1_1:-6097356 | Msa0003520:CDS |
| CATTCAAAATCTTTCAGCTA+TGG | 0.503489 | 1_1:-6096401 | Msa0003520:CDS |
| TACACTGTTTCACTGAGTAC+AGG | 0.506736 | 1_1:+6097214 | None:intergenic |
| GTGAAACTGACATGAAGGTT+AGG | 0.506937 | 1_1:-6097135 | Msa0003520:CDS |
| ATTGATGTCTTCAGGAAGCA+TGG | 0.507037 | 1_1:-6094811 | Msa0003520:intron |
| GAATATTGGGAGCAGGAGAA+TGG | 0.507785 | 1_1:-6098396 | Msa0003520:CDS |
| ACAGAAGGTAGAGGTGGATA+GGG | 0.508513 | 1_1:-6096837 | Msa0003520:CDS |
| AGCTCCGGAAGTTCGAGAAT+CGG | 0.508743 | 1_1:+6100570 | None:intergenic |
| TCCAACAGCCACTCCGTCAC+CGG | 0.509216 | 1_1:-6100708 | Msa0003520:CDS |
| AGGTGGTCAAGTGGGAAGGC+AGG | 0.509799 | 1_1:-6095910 | Msa0003520:CDS |
| GCAGGAGAATGGTGAAGAAA+AGG | 0.512746 | 1_1:-6098385 | Msa0003520:CDS |
| ATCAGTGGCTTCTCTCCAAT+AGG | 0.513023 | 1_1:+6097783 | None:intergenic |
| CTCAGACAGTGCCCTCTCCA+GGG | 0.513165 | 1_1:+6096517 | None:intergenic |
| TCCGAGAGGCATCAGAGAAT+AGG | 0.514883 | 1_1:-6096198 | Msa0003520:CDS |
| CTGAGATGCTTCACAAGAAG+AGG | 0.516080 | 1_1:+6096961 | None:intergenic |
| AGAGGCAAGAGCACGTGCCC+TGG | 0.516970 | 1_1:-6096534 | Msa0003520:CDS |
| GCCGTCGTAAGCAGATCTTC+CGG | 0.518660 | 1_1:+6100689 | None:intergenic |
| AGAAATATGTATGGATGCAA+AGG | 0.520243 | 1_1:-6097029 | Msa0003520:CDS |
| ATGTGAATTGACAGAGTCTC+CGG | 0.521094 | 1_1:-6097953 | Msa0003520:CDS |
| ATTGGTTGCCAACCACTATC+GGG | 0.521170 | 1_1:+6095306 | None:intergenic |
| AAGTGAGAATAAAGTTGAAG+TGG | 0.522061 | 1_1:-6097992 | Msa0003520:CDS |
| GGCTCTGTAATTAACCTAGG+TGG | 0.523520 | 1_1:-6098174 | Msa0003520:CDS |
| ATTCTCCTTTCCTTGAGCTC+CGG | 0.524021 | 1_1:+6100555 | None:intergenic |
| GGTTAAGGAATATTGGGAGC+AGG | 0.526989 | 1_1:-6098403 | Msa0003520:CDS |
| TCAATGAGAAGAAAGAAAGA+AGG | 0.527897 | 1_1:-6098852 | Msa0003520:CDS |
| ACAGATTCAACATGGAAGAA+AGG | 0.528950 | 1_1:-6094787 | Msa0003520:CDS |
| ACACCGTTTAATGAACCAAA+AGG | 0.529177 | 1_1:-6098195 | Msa0003520:CDS |
| ATGTTAATTGTGCTTCCTGA+TGG | 0.531295 | 1_1:-6094754 | Msa0003520:three_prime_UTR |
| TTTCTCATTTGCTTGACAAG+TGG | 0.531448 | 1_1:+6096628 | None:intergenic |
| ATTGTCTCCAGACAAACATA+AGG | 0.533755 | 1_1:-6098571 | Msa0003520:CDS |
| AAGAGCACGTGCCCTGGAGA+GGG | 0.533837 | 1_1:-6096528 | Msa0003520:CDS |
| TGACATTATTAGGTGAAGCA+TGG | 0.537366 | 1_1:+6099228 | None:intergenic |
| GCTCTGTAATTAACCTAGGT+GGG | 0.540673 | 1_1:-6098173 | Msa0003520:CDS |
| TGGAAGAAAATGCGAGTGAA+AGG | 0.540789 | 1_1:-6097588 | Msa0003520:CDS |
| TCATATCATAAAGTTAATCA+AGG | 0.541152 | 1_1:-6099572 | Msa0003520:CDS |
| GTGCTTCTTTGTTAGTGTTG+AGG | 0.541232 | 1_1:+6100731 | None:intergenic |
| TATAGGAGCAAAGTCAAAAG+TGG | 0.544215 | 1_1:-6099686 | Msa0003520:intron |
| GACAATGATTCCACAAATGT+TGG | 0.545389 | 1_1:-6097157 | Msa0003520:CDS |
| TTATCTGTTACAGGCTGTGA+AGG | 0.546462 | 1_1:+6099086 | None:intergenic |
| TTGAATGAAGGTGATATCAC+CGG | 0.549105 | 1_1:+6099617 | None:intergenic |
| CAATTCGTGAAGCTCGTGAA+AGG | 0.549174 | 1_1:-6096745 | Msa0003520:CDS |
| AGATCGTGTTAATTCTTCAA+AGG | 0.551548 | 1_1:-6099645 | Msa0003520:CDS |
| CCCGATAAGCTGCAGCAGCG+AGG | 0.552225 | 1_1:-6095213 | Msa0003520:CDS |
| AGCAATGGAACAAAGCAAAA+CGG | 0.552231 | 1_1:-6096425 | Msa0003520:CDS |
| CTGCTCAGAGATGTAAAGCT+AGG | 0.553857 | 1_1:-6096221 | Msa0003520:CDS |
| ATGTGCCACTTTGAGATGCT+TGG | 0.554499 | 1_1:+6099012 | None:intergenic |
| GGAGAGGGCACTGTCTGAGA+AGG | 0.555104 | 1_1:-6096513 | Msa0003520:CDS |
| TTCTGTAGCTGCTTTAAGGA+AGG | 0.556360 | 1_1:-6098916 | Msa0003520:CDS |
| ATTGGCTATAAGCCAGAAGA+TGG | 0.556595 | 1_1:-6098120 | Msa0003520:CDS |
| AACAGTCTTTCAACAATGGA+GGG | 0.557749 | 1_1:-6099202 | Msa0003520:CDS |
| ATGGTCTATACCAGCAGCAA+AGG | 0.559400 | 1_1:-6099441 | Msa0003520:CDS |
| TATCAATGTCAAGGAAACAC+TGG | 0.561651 | 1_1:-6097746 | Msa0003520:CDS |
| ACACTGTTTCACTGAGTACA+GGG | 0.561909 | 1_1:+6097215 | None:intergenic |
| GCAGTTAATGAAGCAAGTTA+TGG | 0.562495 | 1_1:-6098357 | Msa0003520:CDS |
| AGCTTTCTTTACATCAGGTG+TGG | 0.562529 | 1_1:+6095263 | None:intergenic |
| CAGGATGATATAATGGTCAC+AGG | 0.563576 | 1_1:-6097349 | Msa0003520:CDS |
| TAAAGCTGAACGCGCTGCTG+TGG | 0.563761 | 1_1:-6096570 | Msa0003520:CDS |
| GGTGGGAAATCGTCGATGAT+GGG | 0.564317 | 1_1:-6098156 | Msa0003520:CDS |
| TCCAGACAAACATAAGGAAG+AGG | 0.565417 | 1_1:-6098565 | Msa0003520:CDS |
| GATTTCTGCGAGAAACATGC+AGG | 0.566233 | 1_1:-6097265 | Msa0003520:CDS |
| TCAAAATCTTTCAGCTATGG+TGG | 0.566831 | 1_1:-6096398 | Msa0003520:intron |
| AATTCGTGAAGCTCGTGAAA+GGG | 0.566984 | 1_1:-6096744 | Msa0003520:CDS |
| AAACAGTCTTTCAACAATGG+AGG | 0.567430 | 1_1:-6099203 | Msa0003520:CDS |
| ATCCGTGACAAAGGAAGTGA+AGG | 0.567826 | 1_1:-6096876 | Msa0003520:CDS |
| GCCAACCACTATCGGGCCCA+AGG | 0.567934 | 1_1:+6095313 | None:intergenic |
| ATGTTAAAAGGTGGTCAAGT+GGG | 0.568578 | 1_1:-6095918 | Msa0003520:CDS |
| CTTCTTTGTTAGTGTTGAGG+TGG | 0.569116 | 1_1:+6100734 | None:intergenic |
| GCAAAAGTACACTTGTGAGA+AGG | 0.569795 | 1_1:-6095178 | Msa0003520:CDS |
| TCCTTGGGCCCGATAGTGGT+TGG | 0.570322 | 1_1:-6095314 | Msa0003520:CDS |
| TCCGGAGCTATTAGACAATG+AGG | 0.570468 | 1_1:-6097935 | Msa0003520:CDS |
| TCATTCAGAATTAATAAGCA+TGG | 0.570815 | 1_1:-6097896 | Msa0003520:CDS |
| CAAGAGCACGTGCCCTGGAG+AGG | 0.571595 | 1_1:-6096529 | Msa0003520:CDS |
| TTCTGGTATTCATTGTGACG+AGG | 0.571760 | 1_1:-6099411 | Msa0003520:CDS |
| AATATGTATGGATGCAAAGG+AGG | 0.571943 | 1_1:-6097026 | Msa0003520:CDS |
| CTTATTAATTCTGAATGATG+AGG | 0.573496 | 1_1:+6097901 | None:intergenic |
| AACTTCCGGAGCTCAAGGAA+AGG | 0.573960 | 1_1:-6100560 | Msa0003520:CDS |
| AGTGACAGACAAGAGGTTGA+AGG | 0.574258 | 1_1:-6098250 | Msa0003520:CDS |
| AACAGTCTTCCAACAATGGA+GGG | 0.577439 | 1_1:-6099325 | Msa0003520:CDS |
| GTTGGTGCATCCAGAAGCAA+TGG | 0.578128 | 1_1:-6096440 | Msa0003520:CDS |
| AAGTGTAAGCAGGGACAGCA+TGG | 0.578502 | 1_1:+6099507 | None:intergenic |
| CACGAACGAAGAAGAAAGAG+AGG | 0.579080 | 1_1:-6100806 | Msa0003520:five_prime_UTR |
| GGAGCTCAAGGAAAGGAGAA+TGG | 0.580568 | 1_1:-6100553 | Msa0003520:CDS |
| AAGAAACAGTCTTTCAACAA+TGG | 0.581600 | 1_1:-6099206 | Msa0003520:CDS |
| GTAAGCAGATCTTCCGGTGA+CGG | 0.582348 | 1_1:+6100695 | None:intergenic |
| GAAGTGAAAATGGAACAAAT+GGG | 0.583313 | 1_1:-6099550 | Msa0003520:CDS |
| CGATAAGCTGCAGCAGCGAG+GGG | 0.583635 | 1_1:-6095211 | Msa0003520:CDS |
| TAATTCTTCAAAGGAAATCC+CGG | 0.584483 | 1_1:-6099636 | Msa0003520:CDS |
| ACTCGTGCAGAAAGAGCAAG+AGG | 0.584590 | 1_1:-6096043 | Msa0003520:CDS |
| TAGTATCAATTTGAAAGTCA+GGG | 0.586049 | 1_1:-6098802 | Msa0003520:CDS |
| GAGAGAGGGCAGCTCTGGAG+AGG | 0.586072 | 1_1:-6096706 | Msa0003520:CDS |
| AAAGGCTCTGTAATTAACCT+AGG | 0.588058 | 1_1:-6098177 | Msa0003520:CDS |
| CTGAAAGAAGCAGATCATGA+AGG | 0.589550 | 1_1:-6098537 | Msa0003520:CDS |
| AAGAAACAGTCTTCCAACAA+TGG | 0.589832 | 1_1:-6099329 | Msa0003520:CDS |
| TCAGATACCCTTCAAAGAAG+AGG | 0.590042 | 1_1:-6096942 | Msa0003520:CDS |
| TCTGGTATTCATTGTGACGA+GGG | 0.590444 | 1_1:-6099410 | Msa0003520:CDS |
| ATCGGGATGCACACAAAGAG+TGG | 0.590973 | 1_1:+6095230 | None:intergenic |
| TGTGACGAGGGGATAAAAGA+AGG | 0.591437 | 1_1:-6099398 | Msa0003520:CDS |
| GAACTCCATGACGACGGCGA+CGG | 0.592859 | 1_1:+6100764 | None:intergenic |
| CCGGAGCTATTAGACAATGA+GGG | 0.593751 | 1_1:-6097934 | Msa0003520:CDS |
| TCATCAAACATCCGTGACAA+AGG | 0.593967 | 1_1:-6096885 | Msa0003520:CDS |
| ATACATATTTCTATAGACTC+AGG | 0.594208 | 1_1:+6097040 | None:intergenic |
| GGCACATATGAAAGTGCTGC+TGG | 0.595442 | 1_1:-6098996 | Msa0003520:CDS |
| TCGTCGAATTGAGAGAAGCT+TGG | 0.598506 | 1_1:+6100636 | None:intergenic |
| AGAGAGGGCAGCTCTGGAGA+GGG | 0.599872 | 1_1:-6096705 | Msa0003520:CDS |
| ATAGCTAGAACTGGATTCTG+AGG | 0.600865 | 1_1:+6097477 | None:intergenic |
| TGGTAAGTCACAGAAGGTAG+AGG | 0.601388 | 1_1:-6096846 | Msa0003520:CDS |
| ATAAAACATATCAACAGAGT+CGG | 0.601558 | 1_1:+6099163 | None:intergenic |
| CATTGATACTTCGAGATCAA+CGG | 0.604620 | 1_1:-6099045 | Msa0003520:CDS |
| AGCCAATGGTAAGTCACAGA+AGG | 0.605760 | 1_1:-6096852 | Msa0003520:CDS |
| CAATTAAACAAGTGTAAGCA+GGG | 0.607398 | 1_1:+6099498 | None:intergenic |
| AGCTCATGTTTGTATGAAGT+AGG | 0.607464 | 1_1:-6094679 | Msa0003520:three_prime_UTR |
| AAACAGTCTTCCAACAATGG+AGG | 0.609392 | 1_1:-6099326 | Msa0003520:CDS |
| GTTTAGCAATATCAATGTCA+AGG | 0.609500 | 1_1:-6097755 | Msa0003520:CDS |
| CGAAGCCTAAAGCATCGAAA+CGG | 0.609970 | 1_1:-6100437 | Msa0003520:intron |
| GATTACTCTAAGGTCTTCAG+CGG | 0.610407 | 1_1:-6100504 | Msa0003520:CDS |
| GTGATTTAAATGGAAATGTG+AGG | 0.611031 | 1_1:-6097663 | Msa0003520:CDS |
| CTGGTATTCATTGTGACGAG+GGG | 0.611620 | 1_1:-6099409 | Msa0003520:CDS |
| TCTGTTACAGGCTGTGAAGG+AGG | 0.611639 | 1_1:+6099089 | None:intergenic |
| CATTTGCTGATGCAAGAGAG+AGG | 0.611807 | 1_1:-6096721 | Msa0003520:CDS |
| TCTGGTCCAGAGAAGTATGT+TGG | 0.615382 | 1_1:-6096458 | Msa0003520:CDS |
| CAGATCTTCCGGTGACGGAG+TGG | 0.615944 | 1_1:+6100700 | None:intergenic |
| CCTGATGGTCATGCACTCTG+TGG | 0.617182 | 1_1:-6094739 | Msa0003520:three_prime_UTR |
| TAAAAGGTGGTCAAGTGGGA+AGG | 0.619386 | 1_1:-6095914 | Msa0003520:CDS |
| GAGATAAGAGAAGAAGAACC+GGG | 0.624058 | 1_1:-6097505 | Msa0003520:CDS |
| TCTGAATGATGAGGACTGCA+CGG | 0.627361 | 1_1:+6097910 | None:intergenic |
| ATTGCTAAACGTACTATCAG+TGG | 0.628136 | 1_1:+6097768 | None:intergenic |
| GATTTATGAAAGAAATGCAA+AGG | 0.628939 | 1_1:-6097689 | Msa0003520:CDS |
| TGTTGGTGAAACTGACATGA+AGG | 0.630531 | 1_1:-6097140 | Msa0003520:CDS |
| TGAAGTTCGTGATTCTACTG+GGG | 0.631933 | 1_1:-6096268 | Msa0003520:intron |
| ATCAGAAGAAACTTGCAGCA+AGG | 0.633986 | 1_1:+6098698 | None:intergenic |
| AGATCACATGAATAAAACTC+TGG | 0.634048 | 1_1:+6097373 | None:intergenic |
| TGAAGACCTTAGAGTAATCG+AGG | 0.637869 | 1_1:+6100508 | None:intergenic |
| AAATGCCAAGCATCTCAAAG+TGG | 0.637894 | 1_1:-6099017 | Msa0003520:CDS |
| TAAGTCACAGAAGGTAGAGG+TGG | 0.639341 | 1_1:-6096843 | Msa0003520:CDS |
| TTCTTGGGATGTAAATCAAG+AGG | 0.643015 | 1_1:-6097815 | Msa0003520:CDS |
| TTTCATAAATCTCTTCATCG+TGG | 0.643783 | 1_1:+6097701 | None:intergenic |
| ACCGGCTGAGAAGACTGCAA+TGG | 0.644940 | 1_1:-6096603 | Msa0003520:CDS |
| GATGTTAAAAGGTGGTCAAG+TGG | 0.645928 | 1_1:-6095919 | Msa0003520:CDS |
| ACAGTGGAGTGACAGACAAG+AGG | 0.647164 | 1_1:-6098257 | Msa0003520:CDS |
| TTTAAGGAAGGCAATAGAAG+AGG | 0.648026 | 1_1:-6098904 | Msa0003520:CDS |
| TGAATGAAGGTGATATCACC+GGG | 0.649170 | 1_1:+6099618 | None:intergenic |
| ATTTGCTGATGCAAGAGAGA+GGG | 0.650221 | 1_1:-6096720 | Msa0003520:CDS |
| GACGGCGACGGTGACGACGA+CGG | 0.651345 | 1_1:+6100776 | None:intergenic |
| TGTGTCAGATGAAGAGATCG+AGG | 0.651842 | 1_1:-6096996 | Msa0003520:CDS |
| GGCAAATTTAGAAGGCCTGT+AGG | 0.651846 | 1_1:-6094658 | Msa0003520:three_prime_UTR |
| TGAGAAGTTGAACAAAACAC+AGG | 0.652092 | 1_1:-6097440 | Msa0003520:CDS |
| CACGGTTGACTCAAATTCAG+CGG | 0.655198 | 1_1:-6098946 | Msa0003520:CDS |
| GATACCCTTCAAAGAAGAGG+AGG | 0.656350 | 1_1:-6096939 | Msa0003520:CDS |
| CGGAGCTATTAGACAATGAG+GGG | 0.656874 | 1_1:-6097933 | Msa0003520:CDS |
| TAGGGTGTGTGGCTCCCTCG+AGG | 0.657421 | 1_1:+6097611 | None:intergenic |
| TGCTTGTGAAAATGACCTCG+AGG | 0.659552 | 1_1:-6097626 | Msa0003520:CDS |
| TCAAGCAAATGAGAAAACAC+CGG | 0.660997 | 1_1:-6096621 | Msa0003520:CDS |
| TCATCGACGATTTCCCACCT+AGG | 0.661183 | 1_1:+6098160 | None:intergenic |
| AAGGAAGTGAAGGAAGCCAA+TGG | 0.661589 | 1_1:-6096866 | Msa0003520:CDS |
| TGTGGAGAGAGCAACTGCAG+AGG | 0.665838 | 1_1:-6096552 | Msa0003520:CDS |
| AGCATGGAACAGATTCAACA+TGG | 0.665975 | 1_1:-6094795 | Msa0003520:CDS |
| GCTTGTGAAAATGACCTCGA+GGG | 0.669828 | 1_1:-6097625 | Msa0003520:CDS |
| GAGTGAAAGGAAAGACAACA+AGG | 0.671135 | 1_1:-6097575 | Msa0003520:CDS |
| TCAGAGAATAGGAGAACGTG+TGG | 0.673831 | 1_1:-6096187 | Msa0003520:intron |
| ATTCAGGCGACACTTGACAG+TGG | 0.679117 | 1_1:-6098273 | Msa0003520:CDS |
| GAAAGTAAGATCAGATATCG+GGG | 0.680548 | 1_1:-6098649 | Msa0003520:CDS |
| GATGTAAAGCTAGGTCCGAG+AGG | 0.681919 | 1_1:-6096212 | Msa0003520:CDS |
| GATGCATGCGAGACTAGCAA+CGG | 0.682120 | 1_1:-6099140 | Msa0003520:CDS |
| GACGAGGGGATAAAAGAAGG+TGG | 0.682852 | 1_1:-6099395 | Msa0003520:CDS |
| ACCGTGTCTTCTAGGTACGT+CGG | 0.684457 | 1_1:+6098963 | None:intergenic |
| TGCTCCGAACTCCATGACGA+CGG | 0.686769 | 1_1:+6100758 | None:intergenic |
| AAGTTAACGAGATTAATACA+AGG | 0.686891 | 1_1:-6098743 | Msa0003520:CDS |
| CAATGTCAAGGAAACACTGG+AGG | 0.687778 | 1_1:-6097743 | Msa0003520:CDS |
| CACTGTTTCACTGAGTACAG+GGG | 0.697126 | 1_1:+6097216 | None:intergenic |
| TCGATGCCGATGTTAAAAGG+TGG | 0.697898 | 1_1:-6095927 | Msa0003520:CDS |
| ACCGGAAGATCTGCTTACGA+CGG | 0.704223 | 1_1:-6100690 | Msa0003520:CDS |
| ACCGACGTACCTAGAAGACA+CGG | 0.718058 | 1_1:-6098964 | Msa0003520:CDS |
| TCAATTCGACGATTACAACG+AGG | 0.771806 | 1_1:-6100625 | Msa0003520:CDS |
| TGAAAGGAAAGACAACAAGG+TGG | 0.803777 | 1_1:-6097572 | Msa0003520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAACAAAAAAAAAAA+AGG | + | chr1_1:6095306-6095325 | None:intergenic | 10.0% |
| !! | AAAAAAAGAAAAAAAAAAGA+AGG | + | chr1_1:6099149-6099168 | None:intergenic | 10.0% |
| !!! | CAATTTTGTAGTATTATTAT+CGG | - | chr1_1:6095425-6095444 | Msa0003520:intron | 15.0% |
| !! | AATTATTCCTTGATTAATAA+AGG | + | chr1_1:6100941-6100960 | None:intergenic | 15.0% |
| !!! | TAATCGTTCTTTGTATTTTA+GGG | - | chr1_1:6095086-6095105 | Msa0003520:intron | 20.0% |
| !! | CGATAATAATACTACAAAAT+TGG | + | chr1_1:6095427-6095446 | None:intergenic | 20.0% |
| !! | TCATATCATAAAGTTAATCA+AGG | - | chr1_1:6095909-6095928 | Msa0003520:CDS | 20.0% |
| !!! | AAAAAATTTTGAGCTTAAAG+AGG | - | chr1_1:6096967-6096986 | Msa0003520:CDS | 20.0% |
| !!! | TACCAGTGTTTTTAATATAA+GGG | + | chr1_1:6097012-6097031 | None:intergenic | 20.0% |
| !! | AAAAATAAATATGACAAGTC+TGG | - | chr1_1:6099005-6099024 | Msa0003520:CDS | 20.0% |
| !! | TCAAGAAATAACAATCTAAA+AGG | + | chr1_1:6099691-6099710 | None:intergenic | 20.0% |
| !!! | ATTTTCATGTTGTTTAATGA+TGG | + | chr1_1:6100361-6100380 | None:intergenic | 20.0% |
| !!! | TGATAAATGTTTTCCATTTT+TGG | + | chr1_1:6100421-6100440 | None:intergenic | 20.0% |
| !!! | TTTTTCTCTCTAAACTTAAA+CGG | - | chr1_1:6100509-6100528 | Msa0003520:CDS | 20.0% |
| !!! | TTATTTTAATTGATGTCTTC+AGG | - | chr1_1:6100662-6100681 | Msa0003520:CDS | 20.0% |
| !!! | ACTTTTTTTTGGAAAAAATG+TGG | + | chr1_1:6100898-6100917 | None:intergenic | 20.0% |
| !!! | AATAGACAACAACTTTTTTT+TGG | + | chr1_1:6100909-6100928 | None:intergenic | 20.0% |
| !! | AAATAAGCCTTTATTAATCA+AGG | - | chr1_1:6100931-6100950 | Msa0003520:five_prime_UTR | 20.0% |
| !! | GTAATCGTTCTTTGTATTTT+AGG | - | chr1_1:6095085-6095104 | Msa0003520:intron | 25.0% |
| !! | TTTTGTAGTATTATTATCGG+AGG | - | chr1_1:6095428-6095447 | Msa0003520:intron | 25.0% |
| ! | TTTGTAGTATTATTATCGGA+GGG | - | chr1_1:6095429-6095448 | Msa0003520:intron | 25.0% |
| ! | TCTTATTAACATGTCATAAG+CGG | + | chr1_1:6095531-6095550 | None:intergenic | 25.0% |
| !! | ATATGACATATTGATCGTTT+TGG | + | chr1_1:6095895-6095914 | None:intergenic | 25.0% |
| !! | GATATGTTTTATGATGAAGA+AGG | - | chr1_1:6096206-6096225 | Msa0003520:CDS | 25.0% |
| ! | ATAAAACATATCAACAGAGT+CGG | + | chr1_1:6096198-6096217 | None:intergenic | 25.0% |
| ! | TTATCCAAATTATCTGTTAC+AGG | + | chr1_1:6096407-6096426 | None:intergenic | 25.0% |
| ! | TAGTATCAATTTGAAAGTCA+GGG | - | chr1_1:6096679-6096698 | Msa0003520:CDS | 25.0% |
| ! | AAGTTAACGAGATTAATACA+AGG | - | chr1_1:6096738-6096757 | Msa0003520:CDS | 25.0% |
| ! | ATTAATACAAGGCAAACATT+TGG | - | chr1_1:6096749-6096768 | Msa0003520:CDS | 25.0% |
| !!! | CTACCAGTGTTTTTAATATA+AGG | + | chr1_1:6097013-6097032 | None:intergenic | 25.0% |
| ! | CTTATATTAAAAACACTGGT+AGG | - | chr1_1:6097011-6097030 | Msa0003520:CDS | 25.0% |
| ! | ATCTGATCATACAATTGAAA+TGG | - | chr1_1:6097057-6097076 | Msa0003520:CDS | 25.0% |
| ! | TCATACAATTGAAATGGTTA+AGG | - | chr1_1:6097063-6097082 | Msa0003520:CDS | 25.0% |
| ! | TTGAAATGGTTAAGGAATAT+TGG | - | chr1_1:6097071-6097090 | Msa0003520:CDS | 25.0% |
| ! | TGAAATGGTTAAGGAATATT+GGG | - | chr1_1:6097072-6097091 | Msa0003520:CDS | 25.0% |
| !! | ATGGGAAAGAAAAAAAGTAT+TGG | - | chr1_1:6097343-6097362 | Msa0003520:CDS | 25.0% |
| ! | AAGATGGTAAAAAGACTAAA+TGG | - | chr1_1:6097377-6097396 | Msa0003520:CDS | 25.0% |
| !!! | GAATAGCTCTCAATATTTTT+TGG | + | chr1_1:6097423-6097442 | None:intergenic | 25.0% |
| ! | AAAAATATTGAGAGCTATTC+AGG | - | chr1_1:6097423-6097442 | Msa0003520:CDS | 25.0% |
| ! | CTTATTAATTCTGAATGATG+AGG | + | chr1_1:6097583-6097602 | None:intergenic | 25.0% |
| ! | TCATTCAGAATTAATAAGCA+TGG | - | chr1_1:6097585-6097604 | Msa0003520:CDS | 25.0% |
| ! | GATTTATGAAAGAAATGCAA+AGG | - | chr1_1:6097792-6097811 | Msa0003520:CDS | 25.0% |
| ! | TCAAACTGATCTAATTTATG+AGG | - | chr1_1:6097954-6097973 | Msa0003520:CDS | 25.0% |
| !! | ATACATATTTCTATAGACTC+AGG | + | chr1_1:6098444-6098463 | None:intergenic | 25.0% |
| ! | TGAGTCTATAGAAATATGTA+TGG | - | chr1_1:6098443-6098462 | Msa0003520:CDS | 25.0% |
| ! | AAAGAATAGAGAAAGAGAAA+AGG | - | chr1_1:6098692-6098711 | Msa0003520:CDS | 25.0% |
| !! | GTCAAAAGAACATTTTGAAT+GGG | - | chr1_1:6098814-6098833 | Msa0003520:CDS | 25.0% |
| ! | CCAATATGTACAAAAAACAT+GGG | + | chr1_1:6099337-6099356 | None:intergenic | 25.0% |
| ! | ACCAATATGTACAAAAAACA+TGG | + | chr1_1:6099338-6099357 | None:intergenic | 25.0% |
| ! | ATCAGAGGTTATATTCTAAA+AGG | + | chr1_1:6099658-6099677 | None:intergenic | 25.0% |
| ! | AGAAATAACAATCTAAAAGG+AGG | + | chr1_1:6099688-6099707 | None:intergenic | 25.0% |
| ! | TTGATATATTGCATATGAAC+TGG | - | chr1_1:6099707-6099726 | Msa0003520:intron | 25.0% |
| ! | AACAATAAAGGAAAAATCCA+TGG | + | chr1_1:6099733-6099752 | None:intergenic | 25.0% |
| ! | GAAAGCTTCATTAACAATAA+AGG | + | chr1_1:6099745-6099764 | None:intergenic | 25.0% |
| ! | AAGGTAGTAGTATAAAGTAA+AGG | + | chr1_1:6100066-6100085 | None:intergenic | 25.0% |
| ! | TGCTATTGACAAAACTAAAA+AGG | + | chr1_1:6100090-6100109 | None:intergenic | 25.0% |
| !! | TTGGTAGATCTATTTTACTT+GGG | - | chr1_1:6100114-6100133 | Msa0003520:intron | 25.0% |
| !! | TTTTCTCTCTAAACTTAAAC+GGG | - | chr1_1:6100510-6100529 | Msa0003520:CDS | 25.0% |
| ! | GGGTTAATATATGTTGTATT+CGG | - | chr1_1:6100530-6100549 | Msa0003520:CDS | 25.0% |
| ! | GGTTAATATATGTTGTATTC+GGG | - | chr1_1:6100531-6100550 | Msa0003520:CDS | 25.0% |
| !!! | GGGTTTTGTTCATTTTATTG+TGG | - | chr1_1:6095106-6095125 | Msa0003520:intron | 30.0% |
| !! | TGTTGTCTTTTCTGATTTGT+CGG | - | chr1_1:6095198-6095217 | Msa0003520:CDS | 30.0% |
| TTAAGCAAAAGCTCTTCAAA+AGG | - | chr1_1:6095381-6095400 | Msa0003520:intron | 30.0% | |
| TAAGCAAAAGCTCTTCAAAA+GGG | - | chr1_1:6095382-6095401 | Msa0003520:intron | 30.0% | |
| ! | TAATTTGCAGCTTATAGCAT+AGG | + | chr1_1:6095696-6095715 | None:intergenic | 30.0% |
| AGATCGTGTTAATTCTTCAA+AGG | - | chr1_1:6095836-6095855 | Msa0003520:intron | 30.0% | |
| TAATTCTTCAAAGGAAATCC+CGG | - | chr1_1:6095845-6095864 | Msa0003520:intron | 30.0% | |
| GTTAATCAAGGAAGTGAAAA+TGG | - | chr1_1:6095921-6095940 | Msa0003520:CDS | 30.0% | |
| GAAGTGAAAATGGAACAAAT+GGG | - | chr1_1:6095931-6095950 | Msa0003520:CDS | 30.0% | |
| CAATTAAACAAGTGTAAGCA+GGG | + | chr1_1:6095986-6096005 | None:intergenic | 30.0% | |
| TCAATTAAACAAGTGTAAGC+AGG | + | chr1_1:6095987-6096006 | None:intergenic | 30.0% | |
| ! | ATGTTTTATGATGAAGAAGG+TGG | - | chr1_1:6096209-6096228 | Msa0003520:CDS | 30.0% |
| ! | GACTGTTTCTTGACATTATT+AGG | + | chr1_1:6096143-6096162 | None:intergenic | 30.0% |
| AAGAAACAGTCTTTCAACAA+TGG | - | chr1_1:6096275-6096294 | Msa0003520:intron | 30.0% | |
| AGAGGCTCAAATGAAAATAA+AGG | - | chr1_1:6096595-6096614 | Msa0003520:CDS | 30.0% | |
| TCAATGAGAAGAAAGAAAGA+AGG | - | chr1_1:6096629-6096648 | Msa0003520:CDS | 30.0% | |
| CTAGTATCAATTTGAAAGTC+AGG | - | chr1_1:6096678-6096697 | Msa0003520:CDS | 30.0% | |
| TTTGAAAGTCAGGGAAAAAA+AGG | - | chr1_1:6096688-6096707 | Msa0003520:CDS | 30.0% | |
| GAGAAAGTAAGATCAGATAT+CGG | - | chr1_1:6096830-6096849 | Msa0003520:CDS | 30.0% | |
| AGAAAGTAAGATCAGATATC+GGG | - | chr1_1:6096831-6096850 | Msa0003520:CDS | 30.0% | |
| ! | GGAGACAATTTCAATTTGTT+CGG | + | chr1_1:6096899-6096918 | None:intergenic | 30.0% |
| GACCCTTATATTAAAAACAC+TGG | - | chr1_1:6097007-6097026 | Msa0003520:CDS | 30.0% | |
| ATTGTATGATCAGATTCTTC+AGG | + | chr1_1:6097052-6097071 | None:intergenic | 30.0% | |
| !! | GACACTTTTGTTTAGTTTCA+TGG | + | chr1_1:6097162-6097181 | None:intergenic | 30.0% |
| !! | TTAGTCTTTTTACCATCTTC+TGG | + | chr1_1:6097376-6097395 | None:intergenic | 30.0% |
| AAGTGAGAATAAAGTTGAAG+TGG | - | chr1_1:6097489-6097508 | Msa0003520:CDS | 30.0% | |
| GTTTAGAAGACAAAAAGAGA+AGG | - | chr1_1:6097632-6097651 | Msa0003520:CDS | 30.0% | |
| GTTTAGCAATATCAATGTCA+AGG | - | chr1_1:6097726-6097745 | Msa0003520:CDS | 30.0% | |
| TTTCATAAATCTCTTCATCG+TGG | + | chr1_1:6097783-6097802 | None:intergenic | 30.0% | |
| GTGATTTAAATGGAAATGTG+AGG | - | chr1_1:6097818-6097837 | Msa0003520:CDS | 30.0% | |
| AGATCACATGAATAAAACTC+TGG | + | chr1_1:6098111-6098130 | None:intergenic | 30.0% | |
| TTAGTAACTTGAACAGATTC+TGG | + | chr1_1:6098195-6098214 | None:intergenic | 30.0% | |
| ATTTGTGGAATCATTGTCAA+TGG | + | chr1_1:6098322-6098341 | None:intergenic | 30.0% | |
| AGAAATATGTATGGATGCAA+AGG | - | chr1_1:6098452-6098471 | Msa0003520:CDS | 30.0% | |
| ATCAATTCCCAGCAAAATAA+AGG | - | chr1_1:6098569-6098588 | Msa0003520:CDS | 30.0% | |
| ! | CGTCAAAAGAACATTTTGAA+TGG | - | chr1_1:6098813-6098832 | Msa0003520:CDS | 30.0% |
| ! | CATAGCTGAAAGATTTTGAA+TGG | + | chr1_1:6099082-6099101 | None:intergenic | 30.0% |
| CATTCAAAATCTTTCAGCTA+TGG | - | chr1_1:6099080-6099099 | Msa0003520:CDS | 30.0% | |
| !!! | CCCATGTTTTTTGTACATAT+TGG | - | chr1_1:6099334-6099353 | Msa0003520:CDS | 30.0% |
| ! | AGAGGTTATATTCTAAAAGG+AGG | + | chr1_1:6099655-6099674 | None:intergenic | 30.0% |
| TCATTAAATACGCCAAATAC+TGG | - | chr1_1:6100017-6100036 | Msa0003520:intron | 30.0% | |
| CATTAAATACGCCAAATACT+GGG | - | chr1_1:6100018-6100037 | Msa0003520:intron | 30.0% | |
| ! | TTTAAAGCAAACCCAGTATT+TGG | + | chr1_1:6100032-6100051 | None:intergenic | 30.0% |
| TTGACAAAACTAAAAAGGCA+AGG | + | chr1_1:6100085-6100104 | None:intergenic | 30.0% | |
| ! | GTTTTGTCAATAGCATTTCT+TGG | - | chr1_1:6100095-6100114 | Msa0003520:intron | 30.0% |
| ! | CTTGGTAGATCTATTTTACT+TGG | - | chr1_1:6100113-6100132 | Msa0003520:intron | 30.0% |
| ! | ACTATTGCTGTTAAAGGAAT+TGG | + | chr1_1:6100196-6100215 | None:intergenic | 30.0% |
| ! | GAAGGTTTTTGATCTTCTAA+AGG | - | chr1_1:6100321-6100340 | Msa0003520:intron | 30.0% |
| ! | TTTGATCTTCTAAAGGTTTG+TGG | - | chr1_1:6100328-6100347 | Msa0003520:intron | 30.0% |
| !! | TTCCATTTTTGGAGAAAGAA+CGG | + | chr1_1:6100410-6100429 | None:intergenic | 30.0% |
| ATCAATAGCATAACTCGTTA+AGG | + | chr1_1:6100450-6100469 | None:intergenic | 30.0% | |
| AATTTCAACCTCAATCACAA+TGG | - | chr1_1:6100475-6100494 | Msa0003520:CDS | 30.0% | |
| ATATATGTTGTATTCGGGAT+TGG | - | chr1_1:6100536-6100555 | Msa0003520:CDS | 30.0% | |
| TATATGTTGTATTCGGGATT+GGG | - | chr1_1:6100537-6100556 | Msa0003520:CDS | 30.0% | |
| ! | AAAGGTCACTTTCAAACATA+AGG | + | chr1_1:6100585-6100604 | None:intergenic | 30.0% |
| !! | AGTGACCTTTTGAAAAATAC+AGG | - | chr1_1:6100595-6100614 | Msa0003520:CDS | 30.0% |
| !! | GTGACCTTTTGAAAAATACA+GGG | - | chr1_1:6100596-6100615 | Msa0003520:CDS | 30.0% |
| !! | CTTACCCTGTATTTTTCAAA+AGG | + | chr1_1:6100603-6100622 | None:intergenic | 30.0% |
| !! | TGAGCTTACTTTTCATTGAA+CGG | + | chr1_1:6100788-6100807 | None:intergenic | 30.0% |
| ATGAAGTAGGCAAATTTAGA+AGG | - | chr1_1:6100815-6100834 | Msa0003520:five_prime_UTR | 30.0% | |
| ! | AATTGATTGTTTTCACCTAC+AGG | + | chr1_1:6100841-6100860 | None:intergenic | 30.0% |
| ! | AGTGAAAGTGACTTTTCCAA+CGG | + | chr1_1:6094556-6094575 | None:intergenic | 35.0% |
| TTCAAACCTCGATTACTCTA+AGG | - | chr1_1:6094967-6094986 | Msa0003520:intron | 35.0% | |
| TTCGGAATCAGTTCTTCAAA+AGG | + | chr1_1:6095028-6095047 | None:intergenic | 35.0% | |
| TCGTTTATTTGCATGTGTGT+TGG | - | chr1_1:6095137-6095156 | Msa0003520:intron | 35.0% | |
| AAGCAAAAGCTCTTCAAAAG+GGG | - | chr1_1:6095383-6095402 | Msa0003520:intron | 35.0% | |
| ! | CACTTGTTAAAGAGTTTGAG+AGG | - | chr1_1:6095494-6095513 | Msa0003520:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | chr1_1:6095581-6095600 | None:intergenic | 35.0% |
| TCTAAGCATCTCACAAGTTA+TGG | + | chr1_1:6095732-6095751 | None:intergenic | 35.0% | |
| TGAGATGCTTAGAATACAGA+CGG | - | chr1_1:6095739-6095758 | Msa0003520:intron | 35.0% | |
| CCTATAGAATAACACATGTC+AGG | + | chr1_1:6095781-6095800 | None:intergenic | 35.0% | |
| ! | CCTGACATGTGTTATTCTAT+AGG | - | chr1_1:6095778-6095797 | Msa0003520:intron | 35.0% |
| TATAGGAGCAAAGTCAAAAG+TGG | - | chr1_1:6095795-6095814 | Msa0003520:intron | 35.0% | |
| TTGAATGAAGGTGATATCAC+CGG | + | chr1_1:6095867-6095886 | None:intergenic | 35.0% | |
| GTGATATCACCTTCATTCAA+TGG | - | chr1_1:6095867-6095886 | Msa0003520:intron | 35.0% | |
| GGAAGTGAAAATGGAACAAA+TGG | - | chr1_1:6095930-6095949 | Msa0003520:CDS | 35.0% | |
| AAGAAACAGTCTTCCAACAA+TGG | - | chr1_1:6096152-6096171 | Msa0003520:intron | 35.0% | |
| TGACATTATTAGGTGAAGCA+TGG | + | chr1_1:6096256-6096275 | None:intergenic | 35.0% | |
| AAACAGTCTTTCAACAATGG+AGG | - | chr1_1:6096278-6096297 | Msa0003520:intron | 35.0% | |
| AACAGTCTTTCAACAATGGA+GGG | - | chr1_1:6096279-6096298 | Msa0003520:intron | 35.0% | |
| ACAGCCTGTAACAGATAATT+TGG | - | chr1_1:6096400-6096419 | Msa0003520:CDS | 35.0% | |
| CATTGATACTTCGAGATCAA+CGG | - | chr1_1:6096436-6096455 | Msa0003520:CDS | 35.0% | |
| TTTAAGGAAGGCAATAGAAG+AGG | - | chr1_1:6096577-6096596 | Msa0003520:CDS | 35.0% | |
| AAGGCAAACATTTGGAGAAA+TGG | - | chr1_1:6096757-6096776 | Msa0003520:CDS | 35.0% | |
| CTTACTTTCTCTGTTCTCAT+TGG | + | chr1_1:6096821-6096840 | None:intergenic | 35.0% | |
| GAAAGTAAGATCAGATATCG+GGG | - | chr1_1:6096832-6096851 | Msa0003520:CDS | 35.0% | |
| ATTGTCTCCAGACAAACATA+AGG | - | chr1_1:6096910-6096929 | Msa0003520:CDS | 35.0% | |
| ! | AATTTTGAGCTTAAAGAGGC+AGG | - | chr1_1:6096971-6096990 | Msa0003520:CDS | 35.0% |
| !! | AGATTCTTCAGGTTTTTCAG+TGG | + | chr1_1:6097041-6097060 | None:intergenic | 35.0% |
| GCAGTTAATGAAGCAAGTTA+TGG | - | chr1_1:6097124-6097143 | Msa0003520:CDS | 35.0% | |
| AGTTGAAGAAGTTGAGAACA+AGG | - | chr1_1:6097261-6097280 | Msa0003520:CDS | 35.0% | |
| ACACCGTTTAATGAACCAAA+AGG | - | chr1_1:6097286-6097305 | Msa0003520:CDS | 35.0% | |
| !!! | GAGCCTTTTGGTTCATTAAA+CGG | + | chr1_1:6097292-6097311 | None:intergenic | 35.0% |
| ! | AGGTTAATTACAGAGCCTTT+TGG | + | chr1_1:6097304-6097323 | None:intergenic | 35.0% |
| AAAGGCTCTGTAATTAACCT+AGG | - | chr1_1:6097304-6097323 | Msa0003520:CDS | 35.0% | |
| AAAAAGAGAAGGAATGCATC+TGG | - | chr1_1:6097643-6097662 | Msa0003520:CDS | 35.0% | |
| TTCTTGGGATGTAAATCAAG+AGG | - | chr1_1:6097666-6097685 | Msa0003520:CDS | 35.0% | |
| AAGAGGTAGAACATTCCTAT+TGG | - | chr1_1:6097683-6097702 | Msa0003520:CDS | 35.0% | |
| ATTGCTAAACGTACTATCAG+TGG | + | chr1_1:6097716-6097735 | None:intergenic | 35.0% | |
| TATCAATGTCAAGGAAACAC+TGG | - | chr1_1:6097735-6097754 | Msa0003520:CDS | 35.0% | |
| GCAAAGGCTAGTGATTTAAA+TGG | - | chr1_1:6097808-6097827 | Msa0003520:CDS | 35.0% | |
| TTCAACTTCTCAGTTTCATC+TGG | + | chr1_1:6098033-6098052 | None:intergenic | 35.0% | |
| TGAGAAGTTGAACAAAACAC+AGG | - | chr1_1:6098041-6098060 | Msa0003520:CDS | 35.0% | |
| !! | GTTTTATTCATGTGATCTGC+AGG | - | chr1_1:6098113-6098132 | Msa0003520:CDS | 35.0% |
| TGATCTGCAGGATGATATAA+TGG | - | chr1_1:6098125-6098144 | Msa0003520:CDS | 35.0% | |
| GACAATGATTCCACAAATGT+TGG | - | chr1_1:6098324-6098343 | Msa0003520:CDS | 35.0% | |
| AATATGTATGGATGCAAAGG+AGG | - | chr1_1:6098455-6098474 | Msa0003520:CDS | 35.0% | |
| !!! | TGACTCTCCTTTATTTTGCT+GGG | + | chr1_1:6098579-6098598 | None:intergenic | 35.0% |
| !!! | ATGACTCTCCTTTATTTTGC+TGG | + | chr1_1:6098580-6098599 | None:intergenic | 35.0% |
| TTTCTCATTTGCTTGACAAG+TGG | + | chr1_1:6098856-6098875 | None:intergenic | 35.0% | |
| TCAAGCAAATGAGAAAACAC+CGG | - | chr1_1:6098860-6098879 | Msa0003520:CDS | 35.0% | |
| AGCAATGGAACAAAGCAAAA+CGG | - | chr1_1:6099056-6099075 | Msa0003520:CDS | 35.0% | |
| TCAAAATCTTTCAGCTATGG+TGG | - | chr1_1:6099083-6099102 | Msa0003520:CDS | 35.0% | |
| AGTTCCACTTTACCTGATAT+CGG | - | chr1_1:6099121-6099140 | Msa0003520:CDS | 35.0% | |
| !! | AAAAAGAAGGTACCGATATC+AGG | + | chr1_1:6099136-6099155 | None:intergenic | 35.0% |
| CAAAAAACATGGGCAAAACA+AGG | + | chr1_1:6099327-6099346 | None:intergenic | 35.0% | |
| TAACGTAGAACAGTGATTGT+TGG | + | chr1_1:6099378-6099397 | None:intergenic | 35.0% | |
| ! | ACTTGACCACCTTTTAACAT+CGG | + | chr1_1:6099563-6099582 | None:intergenic | 35.0% |
| ATGTTAAAAGGTGGTCAAGT+GGG | - | chr1_1:6099563-6099582 | Msa0003520:CDS | 35.0% | |
| ! | AAAGGAGGTATATTCATCAG+AGG | + | chr1_1:6099673-6099692 | None:intergenic | 35.0% |
| AAGCTTTCCTTGTAAACTTC+AGG | - | chr1_1:6099757-6099776 | Msa0003520:intron | 35.0% | |
| AGCTTTCCTTGTAAACTTCA+GGG | - | chr1_1:6099758-6099777 | Msa0003520:intron | 35.0% | |
| TATCTGTGGAGTCTATAACT+TGG | - | chr1_1:6099857-6099876 | Msa0003520:intron | 35.0% | |
| AGTCTATAACTTGGCTGATA+TGG | - | chr1_1:6099866-6099885 | Msa0003520:intron | 35.0% | |
| ! | GTGGTTACTATTGCTGTTAA+AGG | + | chr1_1:6100202-6100221 | None:intergenic | 35.0% |
| TAAGAGAACCATTGTGATTG+AGG | + | chr1_1:6100486-6100505 | None:intergenic | 35.0% | |
| TGGGATCAATTTGACTAACA+TGG | - | chr1_1:6100556-6100575 | Msa0003520:CDS | 35.0% | |
| ACAGATTCAACATGGAAGAA+AGG | - | chr1_1:6100694-6100713 | Msa0003520:CDS | 35.0% | |
| ATGTTAATTGTGCTTCCTGA+TGG | - | chr1_1:6100727-6100746 | Msa0003520:CDS | 35.0% | |
| AGCTCATGTTTGTATGAAGT+AGG | - | chr1_1:6100802-6100821 | Msa0003520:five_prime_UTR | 35.0% | |
| !!! | TTTTTTCCCTCTCATTCCGT+TGG | - | chr1_1:6094537-6094556 | Msa0003520:three_prime_UTR | 40.0% |
| ! | ACTTTTCCAACGGAATGAGA+GGG | + | chr1_1:6094546-6094565 | None:intergenic | 40.0% |
| ! | CTTCTTTGTTAGTGTTGAGG+TGG | + | chr1_1:6094750-6094769 | None:intergenic | 40.0% |
| GTGCTTCTTTGTTAGTGTTG+AGG | + | chr1_1:6094753-6094772 | None:intergenic | 40.0% | |
| ! | CTTGGAGTTCTTAGCTTGAT+TGG | + | chr1_1:6094830-6094849 | None:intergenic | 40.0% |
| TCAATTCGACGATTACAACG+AGG | - | chr1_1:6094856-6094875 | Msa0003520:intron | 40.0% | |
| ! | GACGATTACAACGAGGTTTT+CGG | - | chr1_1:6094863-6094882 | Msa0003520:intron | 40.0% |
| TGAAGACCTTAGAGTAATCG+AGG | + | chr1_1:6094976-6094995 | None:intergenic | 40.0% | |
| !! | GATTACTCTAAGGTCTTCAG+CGG | - | chr1_1:6094977-6094996 | Msa0003520:intron | 40.0% |
| AGCAAAAGCTCTTCAAAAGG+GGG | - | chr1_1:6095384-6095403 | Msa0003520:intron | 40.0% | |
| TTATTATCGGAGGGTCAGTT+TGG | - | chr1_1:6095438-6095457 | Msa0003520:intron | 40.0% | |
| AATACAGACGGTGACCTTAA+TGG | - | chr1_1:6095751-6095770 | Msa0003520:intron | 40.0% | |
| ACATGTCAGGAACACCATTA+AGG | + | chr1_1:6095768-6095787 | None:intergenic | 40.0% | |
| TGAATGAAGGTGATATCACC+GGG | + | chr1_1:6095866-6095885 | None:intergenic | 40.0% | |
| !!! | GTTTTGGCTCCATTGAATGA+AGG | + | chr1_1:6095879-6095898 | None:intergenic | 40.0% |
| TAAAGACGAGCAGAGCTAAA+TGG | - | chr1_1:6096021-6096040 | Msa0003520:intron | 40.0% | |
| TTCTGGTATTCATTGTGACG+AGG | - | chr1_1:6096070-6096089 | Msa0003520:CDS | 40.0% | |
| TCTGGTATTCATTGTGACGA+GGG | - | chr1_1:6096071-6096090 | Msa0003520:CDS | 40.0% | |
| AAACAGTCTTCCAACAATGG+AGG | - | chr1_1:6096155-6096174 | Msa0003520:intron | 40.0% | |
| AACAGTCTTCCAACAATGGA+GGG | - | chr1_1:6096156-6096175 | Msa0003520:intron | 40.0% | |
| TATAGCTTTCCCTCCATTGT+TGG | + | chr1_1:6096168-6096187 | None:intergenic | 40.0% | |
| TTATCTGTTACAGGCTGTGA+AGG | + | chr1_1:6096398-6096417 | None:intergenic | 40.0% | |
| !! | ACTTTGAGATGCTTGGCATT+TGG | + | chr1_1:6096465-6096484 | None:intergenic | 40.0% |
| AAATGCCAAGCATCTCAAAG+TGG | - | chr1_1:6096464-6096483 | Msa0003520:CDS | 40.0% | |
| !! | TTCTGTAGCTGCTTTAAGGA+AGG | - | chr1_1:6096565-6096584 | Msa0003520:CDS | 40.0% |
| GACTTCTGTTTGACATGATC+AGG | + | chr1_1:6096659-6096678 | None:intergenic | 40.0% | |
| ATCAGAAGAAACTTGCAGCA+AGG | + | chr1_1:6096786-6096805 | None:intergenic | 40.0% | |
| CTGCAAGTTTCTTCTGATGT+AGG | - | chr1_1:6096788-6096807 | Msa0003520:CDS | 40.0% | |
| !! | TTTGTTCGGTGCTTCTTGTA+CGG | + | chr1_1:6096885-6096904 | None:intergenic | 40.0% |
| TCCAGACAAACATAAGGAAG+AGG | - | chr1_1:6096916-6096935 | Msa0003520:CDS | 40.0% | |
| ACCTCTTCCTTATGTTTGTC+TGG | + | chr1_1:6096920-6096939 | None:intergenic | 40.0% | |
| CTGAAAGAAGCAGATCATGA+AGG | - | chr1_1:6096944-6096963 | Msa0003520:CDS | 40.0% | |
| !! | CAAAAGTGTCAAGAAGTTGC+TGG | - | chr1_1:6097172-6097191 | Msa0003520:CDS | 40.0% |
| TGGTGAAACAAACCTGATTC+AGG | - | chr1_1:6097192-6097211 | Msa0003520:CDS | 40.0% | |
| GCTCTGTAATTAACCTAGGT+GGG | - | chr1_1:6097308-6097327 | Msa0003520:CDS | 40.0% | |
| ATTGGCTATAAGCCAGAAGA+TGG | - | chr1_1:6097361-6097380 | Msa0003520:CDS | 40.0% | |
| GACTAAATGGTCCATTGATC+AGG | - | chr1_1:6097390-6097409 | Msa0003520:CDS | 40.0% | |
| TTGGCATTCTTCCTGATCAA+TGG | + | chr1_1:6097404-6097423 | None:intergenic | 40.0% | |
| TTGAGAGCTATTCAGGAACT+TGG | - | chr1_1:6097430-6097449 | Msa0003520:CDS | 40.0% | |
| GCTATTCAGGAACTTGGAAA+TGG | - | chr1_1:6097436-6097455 | Msa0003520:CDS | 40.0% | |
| ATGTGAATTGACAGAGTCTC+CGG | - | chr1_1:6097528-6097547 | Msa0003520:CDS | 40.0% | |
| !! | AAGGAATGCATCTGGTTCTT+GGG | - | chr1_1:6097651-6097670 | Msa0003520:CDS | 40.0% |
| TCTCTTCATCGTGGTGAATA+TGG | + | chr1_1:6097774-6097793 | None:intergenic | 40.0% | |
| !! | GAGGTCATTTTCACAAGCAT+GGG | + | chr1_1:6097854-6097873 | None:intergenic | 40.0% |
| ! | ATTTTCTTCCATAGGGTGTG+TGG | + | chr1_1:6097884-6097903 | None:intergenic | 40.0% |
| ! | CACTCGCATTTTCTTCCATA+GGG | + | chr1_1:6097891-6097910 | None:intergenic | 40.0% |
| ! | TCACTCGCATTTTCTTCCAT+AGG | + | chr1_1:6097892-6097911 | None:intergenic | 40.0% |
| TGGAAGAAAATGCGAGTGAA+AGG | - | chr1_1:6097893-6097912 | Msa0003520:CDS | 40.0% | |
| GAGTGAAAGGAAAGACAACA+AGG | - | chr1_1:6097906-6097925 | Msa0003520:CDS | 40.0% | |
| TGAAAGGAAAGACAACAAGG+TGG | - | chr1_1:6097909-6097928 | Msa0003520:CDS | 40.0% | |
| GGAGATAAGAGAAGAAGAAC+CGG | - | chr1_1:6097975-6097994 | Msa0003520:CDS | 40.0% | |
| GAGATAAGAGAAGAAGAACC+GGG | - | chr1_1:6097976-6097995 | Msa0003520:CDS | 40.0% | |
| ATAGCTAGAACTGGATTCTG+AGG | + | chr1_1:6098007-6098026 | None:intergenic | 40.0% | |
| ! | ATCTGGTTCATAGCTAGAAC+TGG | + | chr1_1:6098016-6098035 | None:intergenic | 40.0% |
| CAGGATGATATAATGGTCAC+AGG | - | chr1_1:6098132-6098151 | Msa0003520:CDS | 40.0% | |
| CTTCATCAAAGTCAGAAGTC+TGG | + | chr1_1:6098242-6098261 | None:intergenic | 40.0% | |
| CAGACTTCTGACTTTGATGA+AGG | - | chr1_1:6098240-6098259 | Msa0003520:CDS | 40.0% | |
| ACACTGTTTCACTGAGTACA+GGG | + | chr1_1:6098269-6098288 | None:intergenic | 40.0% | |
| TACACTGTTTCACTGAGTAC+AGG | + | chr1_1:6098270-6098289 | None:intergenic | 40.0% | |
| GTCAGTTTCACCAACATTTG+TGG | + | chr1_1:6098337-6098356 | None:intergenic | 40.0% | |
| ! | TGTTGGTGAAACTGACATGA+AGG | - | chr1_1:6098341-6098360 | Msa0003520:CDS | 40.0% |
| GTGAAACTGACATGAAGGTT+AGG | - | chr1_1:6098346-6098365 | Msa0003520:CDS | 40.0% | |
| GCAAAACCAAGATCAGTGTT+TGG | - | chr1_1:6098368-6098387 | Msa0003520:CDS | 40.0% | |
| ! | CCTTTTCCAAACACTGATCT+TGG | + | chr1_1:6098377-6098396 | None:intergenic | 40.0% |
| CCAAGATCAGTGTTTGGAAA+AGG | - | chr1_1:6098374-6098393 | Msa0003520:CDS | 40.0% | |
| TCAGATACCCTTCAAAGAAG+AGG | - | chr1_1:6098539-6098558 | Msa0003520:CDS | 40.0% | |
| TTCACCTCCTCTTCTTTGAA+GGG | + | chr1_1:6098549-6098568 | None:intergenic | 40.0% | |
| TTTCACCTCCTCTTCTTTGA+AGG | + | chr1_1:6098550-6098569 | None:intergenic | 40.0% | |
| TCATCAAACATCCGTGACAA+AGG | - | chr1_1:6098596-6098615 | Msa0003520:CDS | 40.0% | |
| TTCCTTCACTTCCTTTGTCA+CGG | + | chr1_1:6098610-6098629 | None:intergenic | 40.0% | |
| TACCTTCTGTGACTTACCAT+TGG | + | chr1_1:6098634-6098653 | None:intergenic | 40.0% | |
| AATTCGTGAAGCTCGTGAAA+GGG | - | chr1_1:6098737-6098756 | Msa0003520:CDS | 40.0% | |
| ! | ATTTGCTGATGCAAGAGAGA+GGG | - | chr1_1:6098761-6098780 | Msa0003520:CDS | 40.0% |
| ! | ACATTTTGAATGGGCGAGAA+AGG | - | chr1_1:6098823-6098842 | Msa0003520:CDS | 40.0% |
| ! | TTGCTTTGTTCCATTGCTTC+TGG | + | chr1_1:6099054-6099073 | None:intergenic | 40.0% |
| ! | TCTGAAGTTCGTGATTCTAC+TGG | - | chr1_1:6099211-6099230 | Msa0003520:CDS | 40.0% |
| CTGAAGTTCGTGATTCTACT+GGG | - | chr1_1:6099212-6099231 | Msa0003520:CDS | 40.0% | |
| TGAAGTTCGTGATTCTACTG+GGG | - | chr1_1:6099213-6099232 | Msa0003520:CDS | 40.0% | |
| ATCACTGTTCTACGTTATGC+AGG | - | chr1_1:6099381-6099400 | Msa0003520:CDS | 40.0% | |
| ! | TCGATCACGCATACTCTTTT+CGG | + | chr1_1:6099419-6099438 | None:intergenic | 40.0% |
| ACAATATTCGTTCCTGCAGA+GGG | - | chr1_1:6099519-6099538 | Msa0003520:CDS | 40.0% | |
| GATGTTAAAAGGTGGTCAAG+TGG | - | chr1_1:6099562-6099581 | Msa0003520:CDS | 40.0% | |
| TATTGCATATGAACTGGCCA+TGG | - | chr1_1:6099713-6099732 | Msa0003520:intron | 40.0% | |
| GCTTTCCTTGTAAACTTCAG+GGG | - | chr1_1:6099759-6099778 | Msa0003520:intron | 40.0% | |
| TTACTCCCCTGAAGTTTACA+AGG | + | chr1_1:6099767-6099786 | None:intergenic | 40.0% | |
| TTCGAGACTCGAATGAACAA+TGG | - | chr1_1:6099815-6099834 | Msa0003520:intron | 40.0% | |
| TCGAGACTCGAATGAACAAT+GGG | - | chr1_1:6099816-6099835 | Msa0003520:intron | 40.0% | |
| TAGACTCCACAGATAAGCAA+GGG | + | chr1_1:6099852-6099871 | None:intergenic | 40.0% | |
| ATAGACTCCACAGATAAGCA+AGG | + | chr1_1:6099853-6099872 | None:intergenic | 40.0% | |
| ACTTGAATTTCGCAGATCCT+TGG | - | chr1_1:6100151-6100170 | Msa0003520:intron | 40.0% | |
| CTTGAATTTCGCAGATCCTT+GGG | - | chr1_1:6100152-6100171 | Msa0003520:intron | 40.0% | |
| AATTGGTTGCCAACCACTAT+CGG | + | chr1_1:6100179-6100198 | None:intergenic | 40.0% | |
| AGCTTTCTTTACATCAGGTG+TGG | + | chr1_1:6100221-6100240 | None:intergenic | 40.0% | |
| CGGTAAGCTTTCTTTACATC+AGG | + | chr1_1:6100226-6100245 | None:intergenic | 40.0% | |
| ! | GCAAAAGTACACTTGTGAGA+AGG | - | chr1_1:6100303-6100322 | Msa0003520:intron | 40.0% |
| TTGGAGAAAGAACGGTCAAT+GGG | + | chr1_1:6100402-6100421 | None:intergenic | 40.0% | |
| TTTGGAGAAAGAACGGTCAA+TGG | + | chr1_1:6100403-6100422 | None:intergenic | 40.0% | |
| GACCGTTCTTTCTCCAAAAA+TGG | - | chr1_1:6100405-6100424 | Msa0003520:intron | 40.0% | |
| ATTGATGTCTTCAGGAAGCA+TGG | - | chr1_1:6100670-6100689 | Msa0003520:CDS | 40.0% | |
| AGCATGGAACAGATTCAACA+TGG | - | chr1_1:6100686-6100705 | Msa0003520:CDS | 40.0% | |
| ! | GACTTTTCCAACGGAATGAG+AGG | + | chr1_1:6094547-6094566 | None:intergenic | 45.0% |
| CACGAACGAAGAAGAAAGAG+AGG | - | chr1_1:6094675-6094694 | Msa0003520:three_prime_UTR | 45.0% | |
| TCGTCGAATTGAGAGAAGCT+TGG | + | chr1_1:6094848-6094867 | None:intergenic | 45.0% | |
| GATTCCGATTCTCGAACTTC+CGG | - | chr1_1:6094907-6094926 | Msa0003520:intron | 45.0% | |
| ATTCTCCTTTCCTTGAGCTC+CGG | + | chr1_1:6094929-6094948 | None:intergenic | 45.0% | |
| ! | CGTTTCGATGCTTTAGGCTT+CGG | + | chr1_1:6095046-6095065 | None:intergenic | 45.0% |
| !! | CGAAGCCTAAAGCATCGAAA+CGG | - | chr1_1:6095044-6095063 | Msa0003520:intron | 45.0% |
| ACTCACCGTTTCGATGCTTT+AGG | + | chr1_1:6095052-6095071 | None:intergenic | 45.0% | |
| ATGGTCTATACCAGCAGCAA+AGG | - | chr1_1:6096040-6096059 | Msa0003520:CDS | 45.0% | |
| !! | GAAAAAGCATCCTTTGCTGC+TGG | + | chr1_1:6096053-6096072 | None:intergenic | 45.0% |
| !!! | GCAGCAAAGGATGCTTTTTC+TGG | - | chr1_1:6096053-6096072 | Msa0003520:CDS | 45.0% |
| CTGGTATTCATTGTGACGAG+GGG | - | chr1_1:6096072-6096091 | Msa0003520:CDS | 45.0% | |
| TGTGACGAGGGGATAAAAGA+AGG | - | chr1_1:6096083-6096102 | Msa0003520:intron | 45.0% | |
| !! | ATGTGCCACTTTGAGATGCT+TGG | + | chr1_1:6096472-6096491 | None:intergenic | 45.0% |
| TTCTAGGTACGTCGGTGAAT+CGG | + | chr1_1:6096513-6096532 | None:intergenic | 45.0% | |
| TTGAGTCAACCGTGTCTTCT+AGG | + | chr1_1:6096529-6096548 | None:intergenic | 45.0% | |
| ! | CACGGTTGACTCAAATTCAG+CGG | - | chr1_1:6096535-6096554 | Msa0003520:CDS | 45.0% |
| ! | CAGCTTCTGTAGCTGCTTTA+AGG | - | chr1_1:6096561-6096580 | Msa0003520:CDS | 45.0% |
| GGTTAAGGAATATTGGGAGC+AGG | - | chr1_1:6097078-6097097 | Msa0003520:CDS | 45.0% | |
| GAATATTGGGAGCAGGAGAA+TGG | - | chr1_1:6097085-6097104 | Msa0003520:CDS | 45.0% | |
| GCAGGAGAATGGTGAAGAAA+AGG | - | chr1_1:6097096-6097115 | Msa0003520:CDS | 45.0% | |
| AGTGACAGACAAGAGGTTGA+AGG | - | chr1_1:6097231-6097250 | Msa0003520:CDS | 45.0% | |
| GGCTCTGTAATTAACCTAGG+TGG | - | chr1_1:6097307-6097326 | Msa0003520:CDS | 45.0% | |
| TCCGGAGCTATTAGACAATG+AGG | - | chr1_1:6097546-6097565 | Msa0003520:CDS | 45.0% | |
| CCCTCATTGTCTAATAGCTC+CGG | + | chr1_1:6097550-6097569 | None:intergenic | 45.0% | |
| CCGGAGCTATTAGACAATGA+GGG | - | chr1_1:6097547-6097566 | Msa0003520:CDS | 45.0% | |
| CGGAGCTATTAGACAATGAG+GGG | - | chr1_1:6097548-6097567 | Msa0003520:CDS | 45.0% | |
| TCTGAATGATGAGGACTGCA+CGG | + | chr1_1:6097574-6097593 | None:intergenic | 45.0% | |
| !! | GAAGGAATGCATCTGGTTCT+TGG | - | chr1_1:6097650-6097669 | Msa0003520:CDS | 45.0% |
| ATCAGTGGCTTCTCTCCAAT+AGG | + | chr1_1:6097701-6097720 | None:intergenic | 45.0% | |
| CAATGTCAAGGAAACACTGG+AGG | - | chr1_1:6097738-6097757 | Msa0003520:CDS | 45.0% | |
| !! | CGAGGTCATTTTCACAAGCA+TGG | + | chr1_1:6097855-6097874 | None:intergenic | 45.0% |
| TGCTTGTGAAAATGACCTCG+AGG | - | chr1_1:6097855-6097874 | Msa0003520:CDS | 45.0% | |
| GCTTGTGAAAATGACCTCGA+GGG | - | chr1_1:6097856-6097875 | Msa0003520:CDS | 45.0% | |
| GATTTCTGCGAGAAACATGC+AGG | - | chr1_1:6098216-6098235 | Msa0003520:CDS | 45.0% | |
| CACTGTTTCACTGAGTACAG+GGG | + | chr1_1:6098268-6098287 | None:intergenic | 45.0% | |
| TGTGTCAGATGAAGAGATCG+AGG | - | chr1_1:6098485-6098504 | Msa0003520:CDS | 45.0% | |
| GATACCCTTCAAAGAAGAGG+AGG | - | chr1_1:6098542-6098561 | Msa0003520:CDS | 45.0% | |
| ATCCGTGACAAAGGAAGTGA+AGG | - | chr1_1:6098605-6098624 | Msa0003520:CDS | 45.0% | |
| AAGGAAGTGAAGGAAGCCAA+TGG | - | chr1_1:6098615-6098634 | Msa0003520:CDS | 45.0% | |
| AGCCAATGGTAAGTCACAGA+AGG | - | chr1_1:6098629-6098648 | Msa0003520:CDS | 45.0% | |
| TGGTAAGTCACAGAAGGTAG+AGG | - | chr1_1:6098635-6098654 | Msa0003520:CDS | 45.0% | |
| TAAGTCACAGAAGGTAGAGG+TGG | - | chr1_1:6098638-6098657 | Msa0003520:CDS | 45.0% | |
| ACAGAAGGTAGAGGTGGATA+GGG | - | chr1_1:6098644-6098663 | Msa0003520:CDS | 45.0% | |
| CAATTCGTGAAGCTCGTGAA+AGG | - | chr1_1:6098736-6098755 | Msa0003520:CDS | 45.0% | |
| ! | CATTTGCTGATGCAAGAGAG+AGG | - | chr1_1:6098760-6098779 | Msa0003520:CDS | 45.0% |
| ! | TCTGGTCCAGAGAAGTATGT+TGG | - | chr1_1:6099023-6099042 | Msa0003520:CDS | 45.0% |
| GATGCACCAACATACTTCTC+TGG | + | chr1_1:6099032-6099051 | None:intergenic | 45.0% | |
| !! | GGTACCGATATCAGGTAAAG+TGG | + | chr1_1:6099128-6099147 | None:intergenic | 45.0% |
| GATTCTACTGGGGTCTTTGA+TGG | - | chr1_1:6099223-6099242 | Msa0003520:CDS | 45.0% | |
| CTGCTCAGAGATGTAAAGCT+AGG | - | chr1_1:6099260-6099279 | Msa0003520:CDS | 45.0% | |
| TCCTATTCTCTGATGCCTCT+CGG | + | chr1_1:6099287-6099306 | None:intergenic | 45.0% | |
| TCAGAGAATAGGAGAACGTG+TGG | - | chr1_1:6099294-6099313 | Msa0003520:CDS | 45.0% | |
| GAATAGGAGAACGTGTGGTA+TGG | - | chr1_1:6099299-6099318 | Msa0003520:CDS | 45.0% | |
| GTTCTACGTTATGCAGGCAA+AGG | - | chr1_1:6099387-6099406 | Msa0003520:CDS | 45.0% | |
| CACAATATTCGTTCCTGCAG+AGG | - | chr1_1:6099518-6099537 | Msa0003520:CDS | 45.0% | |
| CTCTCGATGCCGATGTTAAA+AGG | - | chr1_1:6099551-6099570 | Msa0003520:CDS | 45.0% | |
| TCGATGCCGATGTTAAAAGG+TGG | - | chr1_1:6099554-6099573 | Msa0003520:CDS | 45.0% | |
| TAAAAGGTGGTCAAGTGGGA+AGG | - | chr1_1:6099567-6099586 | Msa0003520:CDS | 45.0% | |
| CGAGACTCGAATGAACAATG+GGG | - | chr1_1:6099817-6099836 | Msa0003520:intron | 45.0% | |
| GAGACTCGAATGAACAATGG+GGG | - | chr1_1:6099818-6099837 | Msa0003520:intron | 45.0% | |
| AGACTCGAATGAACAATGGG+GGG | - | chr1_1:6099819-6099838 | Msa0003520:intron | 45.0% | |
| ! | AGAGTACCCTTGCTTATCTG+TGG | - | chr1_1:6099843-6099862 | Msa0003520:intron | 45.0% |
| ATTGGTTGCCAACCACTATC+GGG | + | chr1_1:6100178-6100197 | None:intergenic | 45.0% | |
| ! | GCACACAAAGAGTGGCTTTA+CGG | + | chr1_1:6100246-6100265 | None:intergenic | 45.0% |
| GGCAAATTTAGAAGGCCTGT+AGG | - | chr1_1:6100823-6100842 | Msa0003520:five_prime_UTR | 45.0% | |
| GTAAGCAGATCTTCCGGTGA+CGG | + | chr1_1:6094789-6094808 | None:intergenic | 50.0% | |
| ACCGGAAGATCTGCTTACGA+CGG | - | chr1_1:6094791-6094810 | Msa0003520:CDS | 50.0% | |
| AGCTCCGGAAGTTCGAGAAT+CGG | + | chr1_1:6094914-6094933 | None:intergenic | 50.0% | |
| AACTTCCGGAGCTCAAGGAA+AGG | - | chr1_1:6094921-6094940 | Msa0003520:intron | 50.0% | |
| GGAGCTCAAGGAAAGGAGAA+TGG | - | chr1_1:6094928-6094947 | Msa0003520:intron | 50.0% | |
| AAGTGTAAGCAGGGACAGCA+TGG | + | chr1_1:6095977-6095996 | None:intergenic | 50.0% | |
| GACGAGGGGATAAAAGAAGG+TGG | - | chr1_1:6096086-6096105 | Msa0003520:intron | 50.0% | |
| GATGCATGCGAGACTAGCAA+CGG | - | chr1_1:6096341-6096360 | Msa0003520:intron | 50.0% | |
| TCTGTTACAGGCTGTGAAGG+AGG | + | chr1_1:6096395-6096414 | None:intergenic | 50.0% | |
| !! | GGCACATATGAAAGTGCTGC+TGG | - | chr1_1:6096485-6096504 | Msa0003520:CDS | 50.0% |
| ACCGACGTACCTAGAAGACA+CGG | - | chr1_1:6096517-6096536 | Msa0003520:CDS | 50.0% | |
| ACCGTGTCTTCTAGGTACGT+CGG | + | chr1_1:6096521-6096540 | None:intergenic | 50.0% | |
| ! | TGTCAAGTGTCGCCTGAATC+AGG | + | chr1_1:6097207-6097226 | None:intergenic | 50.0% |
| ATTCAGGCGACACTTGACAG+TGG | - | chr1_1:6097208-6097227 | Msa0003520:CDS | 50.0% | |
| ACAGTGGAGTGACAGACAAG+AGG | - | chr1_1:6097224-6097243 | Msa0003520:CDS | 50.0% | |
| TCATCGACGATTTCCCACCT+AGG | + | chr1_1:6097324-6097343 | None:intergenic | 50.0% | |
| AGGTGGGAAATCGTCGATGA+TGG | - | chr1_1:6097324-6097343 | Msa0003520:CDS | 50.0% | |
| GGTGGGAAATCGTCGATGAT+GGG | - | chr1_1:6097325-6097344 | Msa0003520:CDS | 50.0% | |
| CACAGAAGGTAGAGGTGGAT+AGG | - | chr1_1:6098643-6098662 | Msa0003520:CDS | 50.0% | |
| TCCATTGCAGTCTTCTCAGC+CGG | + | chr1_1:6098882-6098901 | None:intergenic | 50.0% | |
| GTTGGTGCATCCAGAAGCAA+TGG | - | chr1_1:6099041-6099060 | Msa0003520:CDS | 50.0% | |
| GATGTAAAGCTAGGTCCGAG+AGG | - | chr1_1:6099269-6099288 | Msa0003520:CDS | 50.0% | |
| !! | TCCGAGAGGCATCAGAGAAT+AGG | - | chr1_1:6099283-6099302 | Msa0003520:CDS | 50.0% |
| ACTCGTGCAGAAAGAGCAAG+AGG | - | chr1_1:6099438-6099457 | Msa0003520:CDS | 50.0% | |
| ATCGGGATGCACACAAAGAG+TGG | + | chr1_1:6100254-6100273 | None:intergenic | 50.0% | |
| TGCTCCGAACTCCATGACGA+CGG | + | chr1_1:6094726-6094745 | None:intergenic | 55.0% | |
| GCCGTCGTAAGCAGATCTTC+CGG | + | chr1_1:6094795-6094814 | None:intergenic | 55.0% | |
| TCTCGAACTTCCGGAGCTCA+AGG | - | chr1_1:6094916-6094935 | Msa0003520:intron | 55.0% | |
| !! | CTGGATTCTGAGGTGTTGCC+CGG | + | chr1_1:6097997-6098016 | None:intergenic | 55.0% |
| ACCGGCTGAGAAGACTGCAA+TGG | - | chr1_1:6098878-6098897 | Msa0003520:CDS | 55.0% | |
| TAAAGCTGAACGCGCTGCTG+TGG | - | chr1_1:6098911-6098930 | Msa0003520:CDS | 55.0% | |
| TGTGGAGAGAGCAACTGCAG+AGG | - | chr1_1:6098929-6098948 | Msa0003520:CDS | 55.0% | |
| CCACAGAGTGCATGACCATC+AGG | + | chr1_1:6100745-6100764 | None:intergenic | 55.0% | |
| CCTGATGGTCATGCACTCTG+TGG | - | chr1_1:6100742-6100761 | Msa0003520:CDS | 55.0% | |
| GAACTCCATGACGACGGCGA+CGG | + | chr1_1:6094720-6094739 | None:intergenic | 60.0% | |
| GTCGCCGTCGTCATGGAGTT+CGG | - | chr1_1:6094719-6094738 | Msa0003520:three_prime_UTR | 60.0% | |
| TCCAACAGCCACTCCGTCAC+CGG | - | chr1_1:6094773-6094792 | Msa0003520:exon | 60.0% | |
| !! | CAGATCTTCCGGTGACGGAG+TGG | + | chr1_1:6094784-6094803 | None:intergenic | 60.0% |
| TGCAAGAGAGAGGGCAGCTC+TGG | - | chr1_1:6098770-6098789 | Msa0003520:CDS | 60.0% | |
| !! | AGAGAGGGCAGCTCTGGAGA+GGG | - | chr1_1:6098776-6098795 | Msa0003520:CDS | 60.0% |
| ! | AAGAGCACGTGCCCTGGAGA+GGG | - | chr1_1:6098953-6098972 | Msa0003520:CDS | 60.0% |
| CTCAGACAGTGCCCTCTCCA+GGG | + | chr1_1:6098967-6098986 | None:intergenic | 60.0% | |
| TCTCAGACAGTGCCCTCTCC+AGG | + | chr1_1:6098968-6098987 | None:intergenic | 60.0% | |
| !! | GGAGAGGGCACTGTCTGAGA+AGG | - | chr1_1:6098968-6098987 | Msa0003520:CDS | 60.0% |
| GAGCTTCAGCTACCCTCTGC+AGG | + | chr1_1:6099534-6099553 | None:intergenic | 60.0% | |
| AGGTGGTCAAGTGGGAAGGC+AGG | - | chr1_1:6099571-6099590 | Msa0003520:CDS | 60.0% | |
| CAGATCCTTGGGCCCGATAG+TGG | - | chr1_1:6100163-6100182 | Msa0003520:intron | 60.0% | |
| ! | TCCTTGGGCCCGATAGTGGT+TGG | - | chr1_1:6100167-6100186 | Msa0003520:intron | 60.0% |
| CCTCGCTGCTGCAGCTTATC+GGG | + | chr1_1:6100271-6100290 | None:intergenic | 60.0% | |
| CCCTCGCTGCTGCAGCTTAT+CGG | + | chr1_1:6100272-6100291 | None:intergenic | 60.0% | |
| CCGATAAGCTGCAGCAGCGA+GGG | - | chr1_1:6100269-6100288 | Msa0003520:intron | 60.0% | |
| CGATAAGCTGCAGCAGCGAG+GGG | - | chr1_1:6100270-6100289 | Msa0003520:intron | 60.0% | |
| !! | TCCGGTGACGGAGTGGCTGT+TGG | + | chr1_1:6094777-6094796 | None:intergenic | 65.0% |
| TAGGGTGTGTGGCTCCCTCG+AGG | + | chr1_1:6097873-6097892 | None:intergenic | 65.0% | |
| CGAGGGAGCCACACACCCTA+TGG | - | chr1_1:6097873-6097892 | Msa0003520:CDS | 65.0% | |
| !! | GAGAGAGGGCAGCTCTGGAG+AGG | - | chr1_1:6098775-6098794 | Msa0003520:CDS | 65.0% |
| ! | AGAGGCAAGAGCACGTGCCC+TGG | - | chr1_1:6098947-6098966 | Msa0003520:CDS | 65.0% |
| ! | CAAGAGCACGTGCCCTGGAG+AGG | - | chr1_1:6098952-6098971 | Msa0003520:CDS | 65.0% |
| GCCAACCACTATCGGGCCCA+AGG | + | chr1_1:6100171-6100190 | None:intergenic | 65.0% | |
| CCCGATAAGCTGCAGCAGCG+AGG | - | chr1_1:6100268-6100287 | Msa0003520:intron | 65.0% | |
| GACGGCGACGGTGACGACGA+CGG | + | chr1_1:6094708-6094727 | None:intergenic | 70.0% | |
| CGTCACCGTCGCCGTCGTCA+TGG | - | chr1_1:6094712-6094731 | Msa0003520:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6094536 | 6100967 | 6094536 | ID=Msa0003520;Name=Msa0003520 |
| chr1_1 | mRNA | 6094536 | 6100967 | 6094536 | ID=Msa0003520-mRNA-1;Parent=Msa0003520;Name=Msa0003520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=195|1|0.85|1|1|1|7|248|1368 |
| chr1_1 | exon | 6094536 | 6094819 | 6094536 | ID=Msa0003520-mRNA-1:exon:1953;Parent=Msa0003520-mRNA-1 |
| chr1_1 | exon | 6095161 | 6095337 | 6095161 | ID=Msa0003520-mRNA-1:exon:1952;Parent=Msa0003520-mRNA-1 |
| chr1_1 | exon | 6095876 | 6095965 | 6095876 | ID=Msa0003520-mRNA-1:exon:1951;Parent=Msa0003520-mRNA-1 |
| chr1_1 | exon | 6096035 | 6096100 | 6096035 | ID=Msa0003520-mRNA-1:exon:1950;Parent=Msa0003520-mRNA-1 |
| chr1_1 | exon | 6096188 | 6096285 | 6096188 | ID=Msa0003520-mRNA-1:exon:1949;Parent=Msa0003520-mRNA-1 |
| chr1_1 | exon | 6096399 | 6099703 | 6096399 | ID=Msa0003520-mRNA-1:exon:1948;Parent=Msa0003520-mRNA-1 |
| chr1_1 | exon | 6100438 | 6100967 | 6100438 | ID=Msa0003520-mRNA-1:exon:1947;Parent=Msa0003520-mRNA-1 |
| chr1_1 | five_prime_UTR | 6100773 | 6100967 | 6100773 | ID=Msa0003520-mRNA-1:five_prime_utr;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6100438 | 6100772 | 6100438 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6096399 | 6099703 | 6096399 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6096188 | 6096285 | 6096188 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6096035 | 6096100 | 6096035 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6095876 | 6095965 | 6095876 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6095161 | 6095337 | 6095161 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | CDS | 6094784 | 6094819 | 6094784 | ID=Msa0003520-mRNA-1:cds;Parent=Msa0003520-mRNA-1 |
| chr1_1 | three_prime_UTR | 6094536 | 6094783 | 6094536 | ID=Msa0003520-mRNA-1:three_prime_utr;Parent=Msa0003520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
