Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006500 | sp|Q8IRW8|TRR_DROME | 40.764 | 157 | 87 | 2 | 120 | 275 | 2280 | 2431 | 7.41e-39 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0006500 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006500 | Msa0200260 | 0.806080 | 9.784384e-50 | -8.615850e-47 |
| Msa0006500 | Msa0709400 | 0.802232 | 6.186877e-49 | -8.615850e-47 |
| Msa0006500 | Msa0730430 | 0.811995 | 5.297706e-51 | -8.615850e-47 |
| Msa0006500 | Msa0903250 | 0.803699 | 3.077582e-49 | -8.615850e-47 |
| Msa0006500 | Msa0979730 | 0.802591 | 5.217809e-49 | -8.615850e-47 |
| Msa0006500 | Msa0990540 | 0.801555 | 8.520052e-49 | -8.615850e-47 |
| Msa0006500 | Msa1140210 | 0.804513 | 2.084172e-49 | -8.615850e-47 |
| Msa0006500 | Msa1452240 | 0.800418 | 1.454577e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006500 | MtrunA17_Chr1g0149581 | 91.176 | 272 | 14 | 1 | 14 | 275 | 1395 | 1666 | 1.97e-172 | 518 |
| Msa0006500 | MtrunA17_Chr1g0149611 | 76.190 | 273 | 52 | 2 | 13 | 275 | 239 | 508 | 6.08e-147 | 421 |
| Msa0006500 | MtrunA17_Chr2g0297191 | 47.260 | 146 | 71 | 3 | 130 | 275 | 1032 | 1171 | 6.23e-35 | 133 |
| Msa0006500 | MtrunA17_Chr8g0347071 | 47.887 | 142 | 67 | 3 | 136 | 275 | 813 | 949 | 1.85e-34 | 131 |
| Msa0006500 | MtrunA17_Chr1g0147121 | 46.479 | 142 | 69 | 4 | 136 | 275 | 898 | 1034 | 9.60e-34 | 129 |
| Msa0006500 | MtrunA17_Chr3g0126701 | 45.775 | 142 | 70 | 3 | 136 | 275 | 927 | 1063 | 4.13e-33 | 127 |
| Msa0006500 | MtrunA17_Chr7g0275611 | 44.755 | 143 | 70 | 4 | 136 | 275 | 828 | 964 | 4.03e-32 | 125 |
| Msa0006500 | MtrunA17_Chr7g0221611 | 43.836 | 146 | 77 | 3 | 130 | 275 | 905 | 1045 | 1.05e-30 | 120 |
| Msa0006500 | MtrunA17_Chr3g0125251 | 34.483 | 145 | 91 | 1 | 127 | 271 | 1321 | 1461 | 8.15e-21 | 92.4 |
| Msa0006500 | MtrunA17_Chr1g0201311 | 35.461 | 141 | 86 | 2 | 134 | 274 | 88 | 223 | 1.23e-19 | 88.2 |
| Msa0006500 | MtrunA17_Chr6g0477001 | 32.432 | 148 | 94 | 2 | 127 | 274 | 109 | 250 | 2.63e-19 | 86.3 |
| Msa0006500 | MtrunA17_Chr1g0201621 | 34.752 | 141 | 87 | 2 | 134 | 274 | 88 | 223 | 7.50e-19 | 85.9 |
| Msa0006500 | MtrunA17_Chr5g0403241 | 31.250 | 160 | 86 | 4 | 132 | 274 | 1354 | 1506 | 5.07e-18 | 84.0 |
| Msa0006500 | MtrunA17_Chr2g0305371 | 33.333 | 150 | 90 | 3 | 124 | 271 | 327 | 468 | 1.69e-17 | 82.0 |
| Msa0006500 | MtrunA17_Chr1g0194631 | 33.333 | 126 | 78 | 1 | 127 | 252 | 607 | 726 | 1.91e-17 | 82.0 |
| Msa0006500 | MtrunA17_Chr5g0401921 | 33.333 | 123 | 76 | 1 | 130 | 252 | 714 | 830 | 6.24e-17 | 80.5 |
| Msa0006500 | MtrunA17_Chr4g0075321 | 32.500 | 160 | 84 | 5 | 132 | 274 | 911 | 1063 | 1.45e-15 | 76.6 |
| Msa0006500 | MtrunA17_Chr6g0460921 | 30.769 | 156 | 90 | 6 | 133 | 274 | 268 | 419 | 5.38e-14 | 71.2 |
| Msa0006500 | MtrunA17_Chr7g0255181 | 33.758 | 157 | 86 | 5 | 132 | 271 | 546 | 701 | 5.86e-14 | 71.6 |
| Msa0006500 | MtrunA17_Chr7g0235081 | 30.400 | 125 | 79 | 2 | 130 | 252 | 194 | 312 | 7.21e-14 | 70.9 |
| Msa0006500 | MtrunA17_Chr3g0080761 | 28.977 | 176 | 92 | 4 | 132 | 274 | 488 | 663 | 6.21e-13 | 68.6 |
| Msa0006500 | MtrunA17_Chr7g0270001 | 28.676 | 136 | 88 | 2 | 127 | 262 | 145 | 271 | 1.36e-12 | 66.6 |
| Msa0006500 | MtrunA17_Chr1g0170651 | 33.784 | 148 | 78 | 5 | 132 | 270 | 405 | 541 | 1.43e-12 | 67.4 |
| Msa0006500 | MtrunA17_Chr8g0373821 | 30.128 | 156 | 82 | 5 | 132 | 270 | 388 | 533 | 3.24e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006500 | AT3G61740.1 | 46.154 | 143 | 69 | 3 | 136 | 275 | 881 | 1018 | 3.18e-33 | 128 |
| Msa0006500 | AT3G61740.2 | 46.154 | 143 | 69 | 3 | 136 | 275 | 845 | 982 | 4.00e-33 | 128 |
| Msa0006500 | AT4G27910.1 | 45.775 | 142 | 70 | 3 | 136 | 275 | 891 | 1027 | 2.41e-32 | 126 |
| Msa0006500 | AT5G42400.7 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.2 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.8 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.5 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.4 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.1 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.3 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT5G42400.6 | 44.521 | 146 | 75 | 3 | 130 | 275 | 1249 | 1388 | 4.60e-32 | 125 |
| Msa0006500 | AT1G05830.2 | 44.667 | 150 | 70 | 3 | 130 | 275 | 919 | 1059 | 1.80e-31 | 123 |
| Msa0006500 | AT1G05830.4 | 44.667 | 150 | 70 | 3 | 130 | 275 | 919 | 1059 | 1.80e-31 | 123 |
| Msa0006500 | AT1G05830.1 | 44.667 | 150 | 70 | 3 | 130 | 275 | 919 | 1059 | 1.80e-31 | 123 |
| Msa0006500 | AT1G05830.3 | 44.667 | 150 | 70 | 3 | 130 | 275 | 919 | 1059 | 1.80e-31 | 123 |
| Msa0006500 | AT5G53430.1 | 45.775 | 142 | 70 | 3 | 136 | 275 | 907 | 1043 | 2.24e-31 | 123 |
| Msa0006500 | AT2G31650.1 | 43.333 | 150 | 72 | 3 | 130 | 275 | 898 | 1038 | 2.09e-29 | 117 |
| Msa0006500 | AT1G77300.2 | 34.307 | 137 | 86 | 1 | 135 | 271 | 1031 | 1163 | 1.09e-20 | 92.4 |
| Msa0006500 | AT1G77300.1 | 34.307 | 137 | 86 | 1 | 135 | 271 | 1031 | 1163 | 1.17e-20 | 92.0 |
| Msa0006500 | AT2G23740.1 | 34.356 | 163 | 82 | 4 | 132 | 275 | 1219 | 1375 | 4.17e-19 | 87.4 |
| Msa0006500 | AT2G23740.3 | 34.356 | 163 | 82 | 4 | 132 | 275 | 1226 | 1382 | 4.29e-19 | 87.4 |
| Msa0006500 | AT2G23740.6 | 34.356 | 163 | 82 | 4 | 132 | 275 | 1226 | 1382 | 4.29e-19 | 87.4 |
| Msa0006500 | AT2G23740.2 | 34.356 | 163 | 82 | 4 | 132 | 275 | 1226 | 1382 | 4.29e-19 | 87.4 |
| Msa0006500 | AT4G30860.1 | 35.065 | 154 | 94 | 2 | 118 | 271 | 314 | 461 | 3.09e-18 | 84.7 |
| Msa0006500 | AT1G02580.1 | 35.714 | 126 | 75 | 1 | 130 | 255 | 544 | 663 | 3.42e-18 | 84.7 |
| Msa0006500 | AT1G76710.2 | 35.385 | 130 | 79 | 2 | 141 | 270 | 100 | 224 | 2.45e-17 | 82.0 |
| Msa0006500 | AT1G76710.1 | 35.385 | 130 | 79 | 2 | 141 | 270 | 100 | 224 | 2.45e-17 | 82.0 |
| Msa0006500 | AT2G44150.1 | 32.353 | 136 | 82 | 3 | 141 | 274 | 127 | 254 | 2.55e-17 | 81.3 |
| Msa0006500 | AT1G76710.3 | 35.385 | 130 | 79 | 2 | 141 | 270 | 100 | 224 | 2.84e-17 | 81.6 |
| Msa0006500 | AT1G76710.4 | 35.385 | 130 | 79 | 2 | 141 | 270 | 100 | 224 | 2.89e-17 | 81.6 |
| Msa0006500 | AT3G59960.3 | 32.353 | 136 | 82 | 3 | 141 | 274 | 122 | 249 | 4.92e-17 | 79.3 |
| Msa0006500 | AT3G59960.2 | 32.353 | 136 | 82 | 3 | 141 | 274 | 122 | 249 | 4.92e-17 | 79.3 |
| Msa0006500 | AT3G59960.4 | 32.353 | 136 | 82 | 3 | 141 | 274 | 122 | 249 | 4.92e-17 | 79.3 |
| Msa0006500 | AT3G59960.1 | 32.353 | 136 | 82 | 3 | 141 | 274 | 122 | 249 | 8.12e-17 | 79.3 |
| Msa0006500 | AT2G23380.1 | 35.345 | 116 | 69 | 1 | 137 | 252 | 759 | 868 | 2.33e-16 | 79.3 |
| Msa0006500 | AT2G23380.2 | 35.345 | 116 | 69 | 1 | 137 | 252 | 532 | 641 | 2.39e-16 | 79.3 |
| Msa0006500 | AT4G02020.1 | 31.746 | 126 | 80 | 1 | 127 | 252 | 704 | 823 | 8.88e-16 | 77.8 |
| Msa0006500 | AT2G35160.2 | 30.769 | 156 | 84 | 5 | 132 | 274 | 649 | 793 | 8.94e-15 | 74.7 |
| Msa0006500 | AT2G35160.3 | 30.769 | 156 | 84 | 5 | 132 | 274 | 649 | 793 | 8.94e-15 | 74.7 |
| Msa0006500 | AT2G35160.1 | 30.769 | 156 | 84 | 5 | 132 | 274 | 649 | 793 | 8.94e-15 | 74.7 |
| Msa0006500 | AT2G35160.4 | 30.769 | 156 | 84 | 5 | 132 | 274 | 649 | 793 | 8.94e-15 | 74.7 |
| Msa0006500 | AT2G35160.5 | 30.769 | 156 | 84 | 5 | 132 | 274 | 613 | 757 | 1.01e-14 | 74.3 |
| Msa0006500 | AT2G22740.2 | 30.233 | 172 | 91 | 5 | 132 | 274 | 618 | 789 | 3.16e-14 | 72.8 |
| Msa0006500 | AT2G22740.1 | 30.233 | 172 | 91 | 5 | 132 | 274 | 618 | 789 | 3.16e-14 | 72.8 |
| Msa0006500 | AT5G13960.1 | 31.844 | 179 | 85 | 6 | 131 | 274 | 447 | 623 | 4.26e-14 | 72.4 |
| Msa0006500 | AT5G13960.2 | 31.844 | 179 | 85 | 6 | 131 | 274 | 313 | 489 | 4.32e-14 | 72.4 |
| Msa0006500 | AT3G03750.2 | 30.000 | 160 | 94 | 4 | 131 | 274 | 192 | 349 | 5.09e-14 | 71.6 |
| Msa0006500 | AT4G02020.4 | 30.000 | 100 | 64 | 1 | 127 | 226 | 704 | 797 | 4.91e-11 | 63.5 |
Find 70 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCTGAATATGGAAATTT+TGG | 0.109536 | 1_1:+9400705 | None:intergenic |
| AATCTTGTTGTATACAAATC+TGG | 0.275928 | 1_1:-9399273 | Msa0006500:CDS |
| TCATATGCAGACTGATATTC+AGG | 0.287377 | 1_1:+9401010 | None:intergenic |
| AGTTCAAAGGCGTTTGTTAT+AGG | 0.295989 | 1_1:+9401121 | None:intergenic |
| TCAACTGTTCATCCGGAATA+AGG | 0.303248 | 1_1:+9400775 | None:intergenic |
| TCACGCTCAATATCTGAATA+TGG | 0.321069 | 1_1:+9400696 | None:intergenic |
| AGAGAGATTGAATACATATC+TGG | 0.350649 | 1_1:-9399073 | Msa0006500:CDS |
| TATAGAAGATGTGGGCTTCA+TGG | 0.361142 | 1_1:-9401040 | Msa0006500:CDS |
| CCTCAGTTTCATTTAGCAAC+AGG | 0.365354 | 1_1:+9401089 | None:intergenic |
| TTTAACAATTTAACGACTCA+TGG | 0.402312 | 1_1:+9397670 | None:intergenic |
| TCGGGGTGGATGCCTTATTC+CGG | 0.405972 | 1_1:-9400787 | Msa0006500:CDS |
| CGGATGAACAGTTGAATGCT+TGG | 0.406715 | 1_1:-9400767 | Msa0006500:CDS |
| ATTTGTTAACCATTCATGTC+TGG | 0.426025 | 1_1:-9398960 | Msa0006500:intron |
| AGATGTGGGCTTCATGGTAT+TGG | 0.436919 | 1_1:-9401034 | Msa0006500:CDS |
| TACTTCTCAGTGCATACATA+GGG | 0.453695 | 1_1:-9399229 | Msa0006500:CDS |
| TAATAGATGCCACGAGGAAG+GGG | 0.462743 | 1_1:-9398994 | Msa0006500:CDS |
| GGGTTACAAGGGCCGTAGAT+TGG | 0.466374 | 1_1:-9400847 | Msa0006500:CDS |
| CAGATATTGAGCGTGATTCT+CGG | 0.470436 | 1_1:-9400689 | Msa0006500:CDS |
| TTGCAGTGCCTTAAAACCTC+GGG | 0.470496 | 1_1:-9400805 | Msa0006500:CDS |
| ATAATAGATGCCACGAGGAA+GGG | 0.473392 | 1_1:-9398995 | Msa0006500:CDS |
| ATCTTGTTGTATACAAATCT+GGG | 0.473753 | 1_1:-9399272 | Msa0006500:CDS |
| CAAGCATTCAACTGTTCATC+CGG | 0.474932 | 1_1:+9400768 | None:intergenic |
| AGATATTGAGCGTGATTCTC+GGG | 0.478085 | 1_1:-9400688 | Msa0006500:intron |
| GATGGGCAGTCGAGAGGAAA+AGG | 0.493929 | 1_1:-9400975 | Msa0006500:CDS |
| TACTGTCAGGCGTCTGAAGA+AGG | 0.497090 | 1_1:-9398611 | Msa0006500:intron |
| GTCTATCTTAAAGAAGTAGC+AGG | 0.500696 | 1_1:+9399027 | None:intergenic |
| ATACTTCTCAGTGCATACAT+AGG | 0.502470 | 1_1:-9399230 | Msa0006500:CDS |
| AAATCTGGGATACATGGCCT+TGG | 0.504047 | 1_1:-9399258 | Msa0006500:CDS |
| TTTGTAGGTTGTCTTCTTTG+CGG | 0.513532 | 1_1:-9397831 | Msa0006500:intron |
| TTAACAATTTAACGACTCAT+GGG | 0.514538 | 1_1:+9397671 | None:intergenic |
| CGGCAAAAGTGATTACTGTC+AGG | 0.515921 | 1_1:-9398624 | Msa0006500:CDS |
| GTATACAAATCTGGGATACA+TGG | 0.519890 | 1_1:-9399264 | Msa0006500:CDS |
| GGTTGTCTTCTTTGCGGAGA+GGG | 0.519995 | 1_1:-9397825 | Msa0006500:CDS |
| TATAATAGATGCCACGAGGA+AGG | 0.523300 | 1_1:-9398996 | Msa0006500:CDS |
| GTGCATACATAGGGGTAGAA+TGG | 0.529069 | 1_1:-9399220 | Msa0006500:intron |
| TCGACTGCCCATCACATCGG+TGG | 0.541663 | 1_1:+9400985 | None:intergenic |
| CAGGTTCTGCAGAAGTTCAA+AGG | 0.560787 | 1_1:+9401108 | None:intergenic |
| AGTAATATACCAGACATGAA+TGG | 0.565353 | 1_1:+9398951 | None:intergenic |
| CGACTGCCCATCACATCGGT+GGG | 0.570249 | 1_1:+9400986 | None:intergenic |
| AATAGATGCCACGAGGAAGG+GGG | 0.572024 | 1_1:-9398993 | Msa0006500:CDS |
| TACAAGGGCCGTAGATTGGA+TGG | 0.572279 | 1_1:-9400843 | Msa0006500:CDS |
| TATAGACACCATCCAATCTA+CGG | 0.574019 | 1_1:+9400835 | None:intergenic |
| ATTGCAGTGCCTTAAAACCT+CGG | 0.577811 | 1_1:-9400806 | Msa0006500:CDS |
| CTCTCGACTGCCCATCACAT+CGG | 0.578437 | 1_1:+9400982 | None:intergenic |
| CGATGTGATGGGCAGTCGAG+AGG | 0.588239 | 1_1:-9400981 | Msa0006500:CDS |
| GCGGAGAGGGATATATTACC+TGG | 0.589801 | 1_1:-9397812 | Msa0006500:CDS |
| ATAGATGCCACGAGGAAGGG+GGG | 0.589834 | 1_1:-9398992 | Msa0006500:CDS |
| CTATAGGTTGTAGAGTATGT+CGG | 0.591934 | 1_1:-9399127 | Msa0006500:intron |
| AAAAGGAATTTACCTGTGCT+AGG | 0.595200 | 1_1:-9400958 | Msa0006500:CDS |
| TAGATGCCACGAGGAAGGGG+GGG | 0.597075 | 1_1:-9398991 | Msa0006500:CDS |
| ATATGATCCCACCGATGTGA+TGG | 0.604652 | 1_1:-9400993 | Msa0006500:CDS |
| GAGTATGTCGGTGAAATTGT+GGG | 0.607546 | 1_1:-9399115 | Msa0006500:CDS |
| CATATGCAGACTGATATTCA+GGG | 0.609925 | 1_1:+9401011 | None:intergenic |
| AAATACCTCTGTCCTAGCAC+AGG | 0.617950 | 1_1:+9400946 | None:intergenic |
| ATTTACCTGTGCTAGGACAG+AGG | 0.623104 | 1_1:-9400951 | Msa0006500:intron |
| CCTGTTGCTAAATGAAACTG+AGG | 0.625593 | 1_1:-9401089 | Msa0006500:CDS |
| TATGATCCCACCGATGTGAT+GGG | 0.628689 | 1_1:-9400992 | Msa0006500:CDS |
| AGAGTATGTCGGTGAAATTG+TGG | 0.636114 | 1_1:-9399116 | Msa0006500:CDS |
| TGAAATTGTGGGACAACGTG+TGG | 0.638848 | 1_1:-9399104 | Msa0006500:CDS |
| TCGTAAGTAATCTCTTCACC+AGG | 0.639603 | 1_1:+9397794 | None:intergenic |
| AGGTTGTCTTCTTTGCGGAG+AGG | 0.642304 | 1_1:-9397826 | Msa0006500:CDS |
| AGATTGAATACATATCTGGA+AGG | 0.662018 | 1_1:-9399069 | Msa0006500:CDS |
| ATGTTGACAGCCAAATTGCG+CGG | 0.682433 | 1_1:-9398644 | Msa0006500:intron |
| TGCAGTGCCTTAAAACCTCG+GGG | 0.692639 | 1_1:-9400804 | Msa0006500:CDS |
| ACTTCTCAGTGCATACATAG+GGG | 0.693013 | 1_1:-9399228 | Msa0006500:CDS |
| ACTGAGAAGTATAAAGACCA+AGG | 0.712200 | 1_1:+9399241 | None:intergenic |
| GGAATAAGGCATCCACCCCG+AGG | 0.715340 | 1_1:+9400789 | None:intergenic |
| CTGTTGCTAAATGAAACTGA+GGG | 0.734590 | 1_1:-9401088 | Msa0006500:CDS |
| AACATATAATAGATGCCACG+AGG | 0.744332 | 1_1:-9399000 | Msa0006500:CDS |
| AGTGCCTTAAAACCTCGGGG+TGG | 0.773969 | 1_1:-9400801 | Msa0006500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATATTTTTTATAT+AGG | + | chr1_1:9398217-9398236 | None:intergenic | 0.0% |
| !!! | AATTGATTAAATTTTATCTT+GGG | + | chr1_1:9400814-9400833 | None:intergenic | 10.0% |
| !!! | TAATTGATTAAATTTTATCT+TGG | + | chr1_1:9400815-9400834 | None:intergenic | 10.0% |
| !!! | TTTTATAATTGCATTTCATT+AGG | + | chr1_1:9398898-9398917 | None:intergenic | 15.0% |
| !! | AATGCAATTATAAAAGAAAT+TGG | - | chr1_1:9398903-9398922 | Msa0006500:intron | 15.0% |
| !! | CTATATATAATTGAGTTAAA+GGG | + | chr1_1:9400456-9400475 | None:intergenic | 15.0% |
| !!! | GATTATAGAAATGTTTTTTT+CGG | - | chr1_1:9400566-9400585 | Msa0006500:intron | 15.0% |
| !!! | AAACATTTTGAATGATTTTA+TGG | - | chr1_1:9400733-9400752 | Msa0006500:CDS | 15.0% |
| !!! | TTGAATTTTATAGAAGATGT+GGG | - | chr1_1:9397693-9397712 | Msa0006500:exon | 20.0% |
| !!! | TTACGATATTAACTATCTTT+TGG | - | chr1_1:9397862-9397881 | Msa0006500:intron | 20.0% |
| !!! | ATATCTGAATATGGAAATTT+TGG | + | chr1_1:9398039-9398058 | None:intergenic | 20.0% |
| !! | AAATTCCAACCTTAAAAAAT+AGG | + | chr1_1:9398104-9398123 | None:intergenic | 20.0% |
| !!! | AATTTTTTATATCGAACTCA+AGG | - | chr1_1:9398119-9398138 | Msa0006500:intron | 20.0% |
| !!! | TCTGAAAATTTTCTAAAAAG+TGG | + | chr1_1:9398970-9398989 | None:intergenic | 20.0% |
| !!! | AATTTGGTATTCTAATGTTT+TGG | - | chr1_1:9399376-9399395 | Msa0006500:intron | 20.0% |
| !!! | ATTTGGTATTCTAATGTTTT+GGG | - | chr1_1:9399377-9399396 | Msa0006500:intron | 20.0% |
| !! | TTATATGCATAAGAAATCAA+TGG | + | chr1_1:9399884-9399903 | None:intergenic | 20.0% |
| !! | AACATTCAATACAGATTATA+TGG | + | chr1_1:9400203-9400222 | None:intergenic | 20.0% |
| !! | ATATAATCTGTATTGAATGT+TGG | - | chr1_1:9400202-9400221 | Msa0006500:intron | 20.0% |
| !!! | TTTTTAATATGGCAATCAAT+CGG | + | chr1_1:9400270-9400289 | None:intergenic | 20.0% |
| !! | ACAAAATAATAGACTTTCAT+TGG | + | chr1_1:9400346-9400365 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATTGTATGAAG+TGG | - | chr1_1:9400400-9400419 | Msa0006500:intron | 20.0% |
| !! | GCTATATATAATTGAGTTAA+AGG | + | chr1_1:9400457-9400476 | None:intergenic | 20.0% |
| !! | TTAACTCAATTATATATAGC+CGG | - | chr1_1:9400457-9400476 | Msa0006500:intron | 20.0% |
| !!! | CTGAAATTAATCTCATATTT+TGG | + | chr1_1:9400696-9400715 | None:intergenic | 20.0% |
| !! | TTAATTTCAGTAGTTATGAT+TGG | - | chr1_1:9400706-9400725 | Msa0006500:CDS | 20.0% |
| !!! | TAAGTGATATTTTGTTTTGT+AGG | - | chr1_1:9400895-9400914 | Msa0006500:intron | 20.0% |
| !!! | TTTTTTGAATTGCAATAACA+TGG | + | chr1_1:9401010-9401029 | None:intergenic | 20.0% |
| !! | GTTGAATTTTATAGAAGATG+TGG | - | chr1_1:9397692-9397711 | Msa0006500:three_prime_UTR | 25.0% |
| !! | ACTATCTTTTGGATTTTTCT+AGG | - | chr1_1:9397873-9397892 | Msa0006500:intron | 25.0% |
| !! | CTATCTTTTGGATTTTTCTA+GGG | - | chr1_1:9397874-9397893 | Msa0006500:intron | 25.0% |
| !!! | GAGTGGTATATTTTGATATT+TGG | - | chr1_1:9398572-9398591 | Msa0006500:intron | 25.0% |
| ! | TAGAAAAACTGAAACTGTAT+TGG | - | chr1_1:9398605-9398624 | Msa0006500:intron | 25.0% |
| ! | AATCGTTACTGTAATTCTAT+CGG | + | chr1_1:9398726-9398745 | None:intergenic | 25.0% |
| ! | AAAAAGTGGTAAAAAACAGA+AGG | + | chr1_1:9398956-9398975 | None:intergenic | 25.0% |
| !! | AATCTTGTTGTATACAAATC+TGG | - | chr1_1:9399468-9399487 | Msa0006500:intron | 25.0% |
| !! | ATCTTGTTGTATACAAATCT+GGG | - | chr1_1:9399469-9399488 | Msa0006500:intron | 25.0% |
| ! | AAATAATAGACTTTCATTGG+AGG | + | chr1_1:9400343-9400362 | None:intergenic | 25.0% |
| ! | TAACTCAATTATATATAGCC+GGG | - | chr1_1:9400458-9400477 | Msa0006500:intron | 25.0% |
| !!! | TTAACTTTTTTTCAGATGCA+TGG | - | chr1_1:9400592-9400611 | Msa0006500:intron | 25.0% |
| !! | TGAATGATTTTATGGAAATG+AGG | - | chr1_1:9400741-9400760 | Msa0006500:CDS | 25.0% |
| !! | GAATGATTTTATGGAAATGA+GGG | - | chr1_1:9400742-9400761 | Msa0006500:CDS | 25.0% |
| !! | GTCATGTCTCTAATATTTTA+TGG | + | chr1_1:9400792-9400811 | None:intergenic | 25.0% |
| ! | TCAATTACTAACTACATATC+TGG | - | chr1_1:9400828-9400847 | Msa0006500:CDS | 25.0% |
| !! | TTTTCTTTTCTTCATCTTCT+CGG | + | chr1_1:9400985-9401004 | None:intergenic | 25.0% |
| ! | ATTGCAATTCAAAAAATTGC+AGG | - | chr1_1:9401014-9401033 | Msa0006500:CDS | 25.0% |
| ! | TTAACAATTTAACGACTCAT+GGG | + | chr1_1:9401073-9401092 | None:intergenic | 25.0% |
| ! | TTTAACAATTTAACGACTCA+TGG | + | chr1_1:9401074-9401093 | None:intergenic | 25.0% |
| !!! | GTGTAGTCTCCTATTTTTTA+AGG | - | chr1_1:9398092-9398111 | Msa0006500:intron | 30.0% |
| !!! | AGTCTCCTATTTTTTAAGGT+TGG | - | chr1_1:9398096-9398115 | Msa0006500:intron | 30.0% |
| !! | TCTTTGTTATTCTACTGCAA+TGG | + | chr1_1:9398346-9398365 | None:intergenic | 30.0% |
| TTTGAATGTTAGCCAGTAAA+GGG | - | chr1_1:9398494-9398513 | Msa0006500:intron | 30.0% | |
| ACTGTATTGGAATCTGTTAT+TGG | - | chr1_1:9398618-9398637 | Msa0006500:CDS | 30.0% | |
| AAAAGAAATTGGCACAAAAC+AGG | - | chr1_1:9398914-9398933 | Msa0006500:intron | 30.0% | |
| CAAGTTTACAATCTTAGGTA+GGG | + | chr1_1:9399069-9399088 | None:intergenic | 30.0% | |
| ACAAGTTTACAATCTTAGGT+AGG | + | chr1_1:9399070-9399089 | None:intergenic | 30.0% | |
| TACCTAAGATTGTAAACTTG+TGG | - | chr1_1:9399069-9399088 | Msa0006500:CDS | 30.0% | |
| !! | TGAGTAGTTGCTTTATTTAC+AGG | - | chr1_1:9399124-9399143 | Msa0006500:CDS | 30.0% |
| TTCTTACTTCAACTGAATTG+CGG | - | chr1_1:9399239-9399258 | Msa0006500:CDS | 30.0% | |
| CCAAAGAACTAAATGCTATT+GGG | + | chr1_1:9399339-9399358 | None:intergenic | 30.0% | |
| !! | CCAATAGCATTTAGTTCTTT+GGG | - | chr1_1:9399337-9399356 | Msa0006500:intron | 30.0% |
| ATTTGCAGAAAGAATATGCT+TGG | - | chr1_1:9399421-9399440 | Msa0006500:intron | 30.0% | |
| TGTGTTTCTCATACTTCTAT+AGG | - | chr1_1:9399598-9399617 | Msa0006500:intron | 30.0% | |
| AGAGAGATTGAATACATATC+TGG | - | chr1_1:9399668-9399687 | Msa0006500:intron | 30.0% | |
| AGATTGAATACATATCTGGA+AGG | - | chr1_1:9399672-9399691 | Msa0006500:intron | 30.0% | |
| ! | ATTTGTTAACCATTCATGTC+TGG | - | chr1_1:9399781-9399800 | Msa0006500:intron | 30.0% |
| AGTAATATACCAGACATGAA+TGG | + | chr1_1:9399793-9399812 | None:intergenic | 30.0% | |
| TTCATGTCTGGTATATTACT+TGG | - | chr1_1:9399793-9399812 | Msa0006500:intron | 30.0% | |
| AACAATAATCAAATGCAGAG+TGG | + | chr1_1:9399824-9399843 | None:intergenic | 30.0% | |
| !! | TCATTGGTTGTAGTTTTCTT+AGG | + | chr1_1:9399986-9400005 | None:intergenic | 30.0% |
| AACTCAATTATATATAGCCG+GGG | - | chr1_1:9400459-9400478 | Msa0006500:intron | 30.0% | |
| !!! | ATATTTTGGTATGCCTCATA+TGG | + | chr1_1:9400682-9400701 | None:intergenic | 30.0% |
| !! | AGTTCAAAGGCGTTTGTTAT+AGG | + | chr1_1:9397623-9397642 | None:intergenic | 35.0% |
| CTGTTGCTAAATGAAACTGA+GGG | - | chr1_1:9397653-9397672 | Msa0006500:three_prime_UTR | 35.0% | |
| CATATGCAGACTGATATTCA+GGG | + | chr1_1:9397733-9397752 | None:intergenic | 35.0% | |
| TCATATGCAGACTGATATTC+AGG | + | chr1_1:9397734-9397753 | None:intergenic | 35.0% | |
| AAAAGGAATTTACCTGTGCT+AGG | - | chr1_1:9397783-9397802 | Msa0006500:CDS | 35.0% | |
| ! | GAGGTATTTCCGTTATTATC+AGG | - | chr1_1:9397809-9397828 | Msa0006500:CDS | 35.0% |
| ATTTCCGTTATTATCAGGAG+TGG | - | chr1_1:9397814-9397833 | Msa0006500:CDS | 35.0% | |
| !!! | TGGATTTTTCTAGGGTTACA+AGG | - | chr1_1:9397882-9397901 | Msa0006500:intron | 35.0% |
| !!! | GGATTTTTCTAGGGTTACAA+GGG | - | chr1_1:9397883-9397902 | Msa0006500:intron | 35.0% |
| TATAGACACCATCCAATCTA+CGG | + | chr1_1:9397909-9397928 | None:intergenic | 35.0% | |
| TCACGCTCAATATCTGAATA+TGG | + | chr1_1:9398048-9398067 | None:intergenic | 35.0% | |
| GTTGTCTAACATGAGAATCT+AGG | - | chr1_1:9398141-9398160 | Msa0006500:intron | 35.0% | |
| TGAGAATCTAGGTAAACTTG+TGG | - | chr1_1:9398152-9398171 | Msa0006500:intron | 35.0% | |
| !! | TGTGTGTGTGTGTCATTTAT+AGG | + | chr1_1:9398240-9398259 | None:intergenic | 35.0% |
| TCTACTGCAATGGAATTCTT+CGG | + | chr1_1:9398336-9398355 | None:intergenic | 35.0% | |
| CAGTAGAATAACAAAGAGCT+TGG | - | chr1_1:9398349-9398368 | Msa0006500:intron | 35.0% | |
| GCTTGGAAAAACTTAAGAAC+AGG | - | chr1_1:9398366-9398385 | Msa0006500:intron | 35.0% | |
| CTTTGAATGTTAGCCAGTAA+AGG | - | chr1_1:9398493-9398512 | Msa0006500:intron | 35.0% | |
| ACAATAAACGAGTTCTCTGA+AGG | + | chr1_1:9398648-9398667 | None:intergenic | 35.0% | |
| ! | ATGCAGCATTATCTAGTTTC+TGG | + | chr1_1:9398752-9398771 | None:intergenic | 35.0% |
| TCATTCTAACTTGGAAGTCT+AGG | + | chr1_1:9399007-9399026 | None:intergenic | 35.0% | |
| TCTGACTTCTCATTCTAACT+TGG | + | chr1_1:9399016-9399035 | None:intergenic | 35.0% | |
| ACAATCTTAGGTAGGGAAAA+CGG | + | chr1_1:9399062-9399081 | None:intergenic | 35.0% | |
| AGCCACAAGTTTACAATCTT+AGG | + | chr1_1:9399074-9399093 | None:intergenic | 35.0% | |
| !!! | GTTTAGTTTTCTCCAATGTG+CGG | - | chr1_1:9399163-9399182 | Msa0006500:intron | 35.0% |
| !! | CCCAATAGCATTTAGTTCTT+TGG | - | chr1_1:9399336-9399355 | Msa0006500:intron | 35.0% |
| CCCAAAGAACTAAATGCTAT+TGG | + | chr1_1:9399340-9399359 | None:intergenic | 35.0% | |
| ! | GTATACAAATCTGGGATACA+TGG | - | chr1_1:9399477-9399496 | Msa0006500:intron | 35.0% |
| ! | ACTGAGAAGTATAAAGACCA+AGG | + | chr1_1:9399503-9399522 | None:intergenic | 35.0% |
| ATACTTCTCAGTGCATACAT+AGG | - | chr1_1:9399511-9399530 | Msa0006500:intron | 35.0% | |
| TACTTCTCAGTGCATACATA+GGG | - | chr1_1:9399512-9399531 | Msa0006500:intron | 35.0% | |
| ACACACATTTGCAATCATAG+TGG | + | chr1_1:9399583-9399602 | None:intergenic | 35.0% | |
| CTATAGGTTGTAGAGTATGT+CGG | - | chr1_1:9399614-9399633 | Msa0006500:intron | 35.0% | |
| GTCTATCTTAAAGAAGTAGC+AGG | + | chr1_1:9399717-9399736 | None:intergenic | 35.0% | |
| AACATATAATAGATGCCACG+AGG | - | chr1_1:9399741-9399760 | Msa0006500:intron | 35.0% | |
| ACTCAATTATATATAGCCGG+GGG | - | chr1_1:9400460-9400479 | Msa0006500:intron | 35.0% | |
| ! | ACACAAGCTTTTTGATCTGT+TGG | - | chr1_1:9400653-9400672 | Msa0006500:intron | 35.0% |
| ! | CATCTTCTATTTAGTGCTGA+TGG | - | chr1_1:9400862-9400881 | Msa0006500:intron | 35.0% |
| TTTGTAGGTTGTCTTCTTTG+CGG | - | chr1_1:9400910-9400929 | Msa0006500:intron | 35.0% | |
| CCTCAGTTTCATTTAGCAAC+AGG | + | chr1_1:9397655-9397674 | None:intergenic | 40.0% | |
| CCTGTTGCTAAATGAAACTG+AGG | - | chr1_1:9397652-9397671 | Msa0006500:three_prime_UTR | 40.0% | |
| TATAGAAGATGTGGGCTTCA+TGG | - | chr1_1:9397701-9397720 | Msa0006500:exon | 40.0% | |
| CACTCCACTCCTGATAATAA+CGG | + | chr1_1:9397821-9397840 | None:intergenic | 40.0% | |
| TTATTATCAGGAGTGGAGTG+TGG | - | chr1_1:9397821-9397840 | Msa0006500:CDS | 40.0% | |
| TATTATCAGGAGTGGAGTGT+GGG | - | chr1_1:9397822-9397841 | Msa0006500:CDS | 40.0% | |
| ATTGCAGTGCCTTAAAACCT+CGG | - | chr1_1:9397935-9397954 | Msa0006500:intron | 40.0% | |
| TCAACTGTTCATCCGGAATA+AGG | + | chr1_1:9397969-9397988 | None:intergenic | 40.0% | |
| CAAGCATTCAACTGTTCATC+CGG | + | chr1_1:9397976-9397995 | None:intergenic | 40.0% | |
| GTGCAAAAATTGCGTTCACA+AGG | - | chr1_1:9398009-9398028 | Msa0006500:intron | 40.0% | |
| CAGATATTGAGCGTGATTCT+CGG | - | chr1_1:9398052-9398071 | Msa0006500:intron | 40.0% | |
| AGATATTGAGCGTGATTCTC+GGG | - | chr1_1:9398053-9398072 | Msa0006500:intron | 40.0% | |
| TGTGGTACTTCTGTAGATTC+AGG | - | chr1_1:9398170-9398189 | Msa0006500:intron | 40.0% | |
| GATTCAGGTGGTAAACTTGT+AGG | - | chr1_1:9398185-9398204 | Msa0006500:intron | 40.0% | |
| CTGCTAATGATGTAAGAGCA+AGG | + | chr1_1:9398429-9398448 | None:intergenic | 40.0% | |
| ACATCCCTAAGAGAAGCAAA+AGG | + | chr1_1:9398551-9398570 | None:intergenic | 40.0% | |
| GTACAAGAGTCAGTTAGACT+CGG | - | chr1_1:9398668-9398687 | Msa0006500:intron | 40.0% | |
| CAATCTTAGGTAGGGAAAAC+GGG | + | chr1_1:9399061-9399080 | None:intergenic | 40.0% | |
| ! | TACCAACGAGTTGACAACTA+TGG | - | chr1_1:9399100-9399119 | Msa0006500:CDS | 40.0% |
| AACCATAGTTGTCAACTCGT+TGG | + | chr1_1:9399105-9399124 | None:intergenic | 40.0% | |
| CTTCAACTGAATTGCGGTTT+AGG | - | chr1_1:9399245-9399264 | Msa0006500:CDS | 40.0% | |
| TAAGCTGCTTCGGGATAATT+TGG | - | chr1_1:9399360-9399379 | Msa0006500:intron | 40.0% | |
| TGCTTGGTACAAACAAGTGA+AGG | - | chr1_1:9399437-9399456 | Msa0006500:intron | 40.0% | |
| GCTTGGTACAAACAAGTGAA+GGG | - | chr1_1:9399438-9399457 | Msa0006500:intron | 40.0% | |
| ACTTCTCAGTGCATACATAG+GGG | - | chr1_1:9399513-9399532 | Msa0006500:intron | 40.0% | |
| AGAGTATGTCGGTGAAATTG+TGG | - | chr1_1:9399625-9399644 | Msa0006500:intron | 40.0% | |
| GAGTATGTCGGTGAAATTGT+GGG | - | chr1_1:9399626-9399645 | Msa0006500:intron | 40.0% | |
| TATAATAGATGCCACGAGGA+AGG | - | chr1_1:9399745-9399764 | Msa0006500:intron | 40.0% | |
| ATAATAGATGCCACGAGGAA+GGG | - | chr1_1:9399746-9399765 | Msa0006500:intron | 40.0% | |
| ! | TCGAGACTTCTAAAGGTCAT+TGG | + | chr1_1:9400002-9400021 | None:intergenic | 40.0% |
| AATGTTGGACTATTGCCACA+TGG | - | chr1_1:9400217-9400236 | Msa0006500:intron | 40.0% | |
| ATGTTGGACTATTGCCACAT+GGG | - | chr1_1:9400218-9400237 | Msa0006500:intron | 40.0% | |
| CAATAACAAAATCCCCCATG+TGG | + | chr1_1:9400235-9400254 | None:intergenic | 40.0% | |
| !! | CACATGGGGGATTTTGTTAT+TGG | - | chr1_1:9400233-9400252 | Msa0006500:intron | 40.0% |
| GTACGTACATGGTTATCACA+AGG | - | chr1_1:9400482-9400501 | Msa0006500:intron | 40.0% | |
| TTATCACAAGGCTACTTGTG+AGG | - | chr1_1:9400494-9400513 | Msa0006500:intron | 40.0% | |
| ATCAAAAAGCTTGTGTGACC+GGG | + | chr1_1:9400649-9400668 | None:intergenic | 40.0% | |
| GATCAAAAAGCTTGTGTGAC+CGG | + | chr1_1:9400650-9400669 | None:intergenic | 40.0% | |
| GATCTGTTGGATACCATATG+AGG | - | chr1_1:9400666-9400685 | Msa0006500:intron | 40.0% | |
| TCGTAAGTAATCTCTTCACC+AGG | + | chr1_1:9400950-9400969 | None:intergenic | 40.0% | |
| CAGGTTCTGCAGAAGTTCAA+AGG | + | chr1_1:9397636-9397655 | None:intergenic | 45.0% | |
| AGATGTGGGCTTCATGGTAT+TGG | - | chr1_1:9397707-9397726 | Msa0006500:exon | 45.0% | |
| ATATGATCCCACCGATGTGA+TGG | - | chr1_1:9397748-9397767 | Msa0006500:CDS | 45.0% | |
| TATGATCCCACCGATGTGAT+GGG | - | chr1_1:9397749-9397768 | Msa0006500:CDS | 45.0% | |
| ATTTACCTGTGCTAGGACAG+AGG | - | chr1_1:9397790-9397809 | Msa0006500:CDS | 45.0% | |
| AAATACCTCTGTCCTAGCAC+AGG | + | chr1_1:9397798-9397817 | None:intergenic | 45.0% | |
| ATTATCAGGAGTGGAGTGTG+GGG | - | chr1_1:9397823-9397842 | Msa0006500:CDS | 45.0% | |
| TTGCAGTGCCTTAAAACCTC+GGG | - | chr1_1:9397936-9397955 | Msa0006500:intron | 45.0% | |
| CGGATGAACAGTTGAATGCT+TGG | - | chr1_1:9397974-9397993 | Msa0006500:intron | 45.0% | |
| GGTACTTCTGTAGATTCAGG+TGG | - | chr1_1:9398173-9398192 | Msa0006500:intron | 45.0% | |
| CTGCAGAGTCTGTTAACTGT+TGG | - | chr1_1:9398401-9398420 | Msa0006500:intron | 45.0% | |
| TAGTAAGCCTTGCTTAGACG+TGG | + | chr1_1:9398453-9398472 | None:intergenic | 45.0% | |
| ACGTCTAAGCAAGGCTTACT+AGG | - | chr1_1:9398452-9398471 | Msa0006500:intron | 45.0% | |
| GAATGTTAGCCAGTAAAGGG+AGG | - | chr1_1:9398497-9398516 | Msa0006500:intron | 45.0% | |
| ! | CCAGTAAAGGGAGGTTTTTG+CGG | - | chr1_1:9398506-9398525 | Msa0006500:intron | 45.0% |
| ! | GAGGCCTTTTGCTTCTCTTA+GGG | - | chr1_1:9398544-9398563 | Msa0006500:intron | 45.0% |
| CTTCTCTTAGGGATGTAGAG+TGG | - | chr1_1:9398555-9398574 | Msa0006500:intron | 45.0% | |
| TGTTGGGGTATGAGCTAATG+TGG | + | chr1_1:9398815-9398834 | None:intergenic | 45.0% | |
| CATTAGCTCATACCCCAACA+TGG | - | chr1_1:9398815-9398834 | Msa0006500:intron | 45.0% | |
| ! | TAGTTTTCTCCAATGTGCGG+CGG | - | chr1_1:9399166-9399185 | Msa0006500:intron | 45.0% |
| GTTCTTTGGGTAAGCTGCTT+CGG | - | chr1_1:9399350-9399369 | Msa0006500:intron | 45.0% | |
| TTCTTTGGGTAAGCTGCTTC+GGG | - | chr1_1:9399351-9399370 | Msa0006500:intron | 45.0% | |
| ! | AAATCTGGGATACATGGCCT+TGG | - | chr1_1:9399483-9399502 | Msa0006500:intron | 45.0% |
| GTGCATACATAGGGGTAGAA+TGG | - | chr1_1:9399521-9399540 | Msa0006500:intron | 45.0% | |
| TGAAATTGTGGGACAACGTG+TGG | - | chr1_1:9399637-9399656 | Msa0006500:intron | 45.0% | |
| TAATAGATGCCACGAGGAAG+GGG | - | chr1_1:9399747-9399766 | Msa0006500:intron | 45.0% | |
| ! | GCTTGCTAAGAGCTAGTTTG+AGG | - | chr1_1:9399912-9399931 | Msa0006500:intron | 45.0% |
| GCAGTGATCGAGACTTCTAA+AGG | + | chr1_1:9400009-9400028 | None:intergenic | 45.0% | |
| ATGTTGACAGCCAAATTGCG+CGG | - | chr1_1:9400097-9400116 | Msa0006500:intron | 45.0% | |
| !! | ATCACTTTTGCCGCGCAATT+TGG | + | chr1_1:9400110-9400129 | None:intergenic | 45.0% |
| CGGCAAAAGTGATTACTGTC+AGG | - | chr1_1:9400117-9400136 | Msa0006500:intron | 45.0% | |
| TGTTGGACTATTGCCACATG+GGG | - | chr1_1:9400219-9400238 | Msa0006500:intron | 45.0% | |
| !!! | TAAATAAGTATTTAATTTTT+TGG | - | chr1_1:9399953-9399972 | Msa0006500:intron | 5.0% |
| !!! | TAAACTATAATTTTTTAATA+TGG | + | chr1_1:9400281-9400300 | None:intergenic | 5.0% |
| TTATCAGGAGTGGAGTGTGG+GGG | - | chr1_1:9397824-9397843 | Msa0006500:CDS | 50.0% | |
| TACAAGGGCCGTAGATTGGA+TGG | - | chr1_1:9397898-9397917 | Msa0006500:intron | 50.0% | |
| TGCAGTGCCTTAAAACCTCG+GGG | - | chr1_1:9397937-9397956 | Msa0006500:intron | 50.0% | |
| TAGCAGTCCACGTCTAAGCA+AGG | - | chr1_1:9398443-9398462 | Msa0006500:intron | 50.0% | |
| CCGCAAAAACCTCCCTTTAC+TGG | + | chr1_1:9398509-9398528 | None:intergenic | 50.0% | |
| ! | GGAGGCCTTTTGCTTCTCTT+AGG | - | chr1_1:9398543-9398562 | Msa0006500:intron | 50.0% |
| CTCGGTGACTAACTTCTGAC+AGG | - | chr1_1:9398686-9398705 | Msa0006500:intron | 50.0% | |
| AGCTCATACCCCAACATGGA+TGG | - | chr1_1:9398819-9398838 | Msa0006500:intron | 50.0% | |
| ! | TCTAGGGCTCCATCCATGTT+GGG | + | chr1_1:9398831-9398850 | None:intergenic | 50.0% |
| TGTGACCAGTGGCTACTCTA+GGG | + | chr1_1:9398847-9398866 | None:intergenic | 50.0% | |
| GCATTTCATTAGGCCAGCCA+TGG | + | chr1_1:9398888-9398907 | None:intergenic | 50.0% | |
| GGTACAAACAAGTGAAGGGC+TGG | - | chr1_1:9399442-9399461 | Msa0006500:intron | 50.0% | |
| GGGGTAGAATGGTACAACAC+TGG | - | chr1_1:9399532-9399551 | Msa0006500:intron | 50.0% | |
| AATAGATGCCACGAGGAAGG+GGG | - | chr1_1:9399748-9399767 | Msa0006500:intron | 50.0% | |
| TACTGTCAGGCGTCTGAAGA+AGG | - | chr1_1:9400130-9400149 | Msa0006500:intron | 50.0% | |
| GTTGGACTATTGCCACATGG+GGG | - | chr1_1:9400220-9400239 | Msa0006500:intron | 50.0% | |
| GATAACCATGTACGTACCCC+CGG | + | chr1_1:9400479-9400498 | None:intergenic | 50.0% | |
| TCACAAGGCTACTTGTGAGG+AGG | - | chr1_1:9400497-9400516 | Msa0006500:intron | 50.0% | |
| TATTTAGCTACTCCCCCTCC+CGG | - | chr1_1:9400628-9400647 | Msa0006500:intron | 50.0% | |
| AAAAGCTTGTGTGACCGGGA+GGG | + | chr1_1:9400645-9400664 | None:intergenic | 50.0% | |
| AAAAAGCTTGTGTGACCGGG+AGG | + | chr1_1:9400646-9400665 | None:intergenic | 50.0% | |
| AGGTTGTCTTCTTTGCGGAG+AGG | - | chr1_1:9400915-9400934 | Msa0006500:intron | 50.0% | |
| GGTTGTCTTCTTTGCGGAGA+GGG | - | chr1_1:9400916-9400935 | Msa0006500:intron | 50.0% | |
| GCGGAGAGGGATATATTACC+TGG | - | chr1_1:9400929-9400948 | Msa0006500:intron | 50.0% | |
| CTCTCGACTGCCCATCACAT+CGG | + | chr1_1:9397762-9397781 | None:intergenic | 55.0% | |
| GATGGGCAGTCGAGAGGAAA+AGG | - | chr1_1:9397766-9397785 | Msa0006500:CDS | 55.0% | |
| TATCAGGAGTGGAGTGTGGG+GGG | - | chr1_1:9397825-9397844 | Msa0006500:CDS | 55.0% | |
| GGGTTACAAGGGCCGTAGAT+TGG | - | chr1_1:9397894-9397913 | Msa0006500:intron | 55.0% | |
| AGTGCCTTAAAACCTCGGGG+TGG | - | chr1_1:9397940-9397959 | Msa0006500:intron | 55.0% | |
| ! | GCATCCACCCCGAGGTTTTA+AGG | + | chr1_1:9397947-9397966 | None:intergenic | 55.0% |
| ! | TCGGGGTGGATGCCTTATTC+CGG | - | chr1_1:9397954-9397973 | Msa0006500:intron | 55.0% |
| CTAGGGCTCCATCCATGTTG+GGG | + | chr1_1:9398830-9398849 | None:intergenic | 55.0% | |
| !! | CTCTAGGGCTCCATCCATGT+TGG | + | chr1_1:9398832-9398851 | None:intergenic | 55.0% |
| CTGTGACCAGTGGCTACTCT+AGG | + | chr1_1:9398848-9398867 | None:intergenic | 55.0% | |
| !! | CTGCATCCGTTCTGAAGCCA+TGG | - | chr1_1:9398868-9398887 | Msa0006500:intron | 55.0% |
| !! | ATCCGTTCTGAAGCCATGGC+TGG | - | chr1_1:9398872-9398891 | Msa0006500:intron | 55.0% |
| ATAGATGCCACGAGGAAGGG+GGG | - | chr1_1:9399749-9399768 | Msa0006500:intron | 55.0% | |
| ! | TATAGCCGGGGGTACGTACA+TGG | - | chr1_1:9400471-9400490 | Msa0006500:intron | 55.0% |
| GCTACTTGTGAGGAGGAGCT+TGG | - | chr1_1:9400504-9400523 | Msa0006500:intron | 55.0% | |
| AAAGCTTGTGTGACCGGGAG+GGG | + | chr1_1:9400644-9400663 | None:intergenic | 55.0% | |
| CGACTGCCCATCACATCGGT+GGG | + | chr1_1:9397758-9397777 | None:intergenic | 60.0% | |
| TCGACTGCCCATCACATCGG+TGG | + | chr1_1:9397759-9397778 | None:intergenic | 60.0% | |
| !! | CGATGTGATGGGCAGTCGAG+AGG | - | chr1_1:9397760-9397779 | Msa0006500:CDS | 60.0% |
| ! | GGAATAAGGCATCCACCCCG+AGG | + | chr1_1:9397955-9397974 | None:intergenic | 60.0% |
| ! | AGGTTTTTGCGGCCCTCCAG+AGG | - | chr1_1:9398517-9398536 | Msa0006500:intron | 60.0% |
| ! | GGTTTTTGCGGCCCTCCAGA+GGG | - | chr1_1:9398518-9398537 | Msa0006500:intron | 60.0% |
| TGGAGCCCTAGAGTAGCCAC+TGG | - | chr1_1:9398839-9398858 | Msa0006500:intron | 60.0% | |
| ACGGATGCAGCTGTGACCAG+TGG | + | chr1_1:9398858-9398877 | None:intergenic | 60.0% | |
| GGCCAGCCATGGCTTCAGAA+CGG | + | chr1_1:9398877-9398896 | None:intergenic | 60.0% | |
| CTGTCATGTCCGCCGCACAT+TGG | + | chr1_1:9399178-9399197 | None:intergenic | 60.0% | |
| CAATGTGCGGCGGACATGAC+AGG | - | chr1_1:9399176-9399195 | Msa0006500:intron | 60.0% | |
| TAGATGCCACGAGGAAGGGG+GGG | - | chr1_1:9399750-9399769 | Msa0006500:intron | 60.0% | |
| AAGCTTGTGTGACCGGGAGG+GGG | + | chr1_1:9400643-9400662 | None:intergenic | 60.0% | |
| GGAGTGGAGTGTGGGGGGAT+TGG | - | chr1_1:9397830-9397849 | Msa0006500:intron | 65.0% | |
| ! | TTTTGCGGCCCTCCAGAGGG+AGG | - | chr1_1:9398521-9398540 | Msa0006500:intron | 65.0% |
| TTTGCGGCCCTCCAGAGGGA+GGG | - | chr1_1:9398522-9398541 | Msa0006500:intron | 65.0% | |
| AAGGCCTCCCTCCCTCTGGA+GGG | + | chr1_1:9398532-9398551 | None:intergenic | 65.0% | |
| AAAGGCCTCCCTCCCTCTGG+AGG | + | chr1_1:9398533-9398552 | None:intergenic | 65.0% | |
| GCAAAAGGCCTCCCTCCCTC+TGG | + | chr1_1:9398536-9398555 | None:intergenic | 65.0% | |
| AGCGATCCCCCCCTTCCTCG+TGG | + | chr1_1:9399759-9399778 | None:intergenic | 70.0% | |
| ! | GCGGCCCTCCAGAGGGAGGG+AGG | - | chr1_1:9398525-9398544 | Msa0006500:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 9397611 | 9401152 | 9397611 | ID=Msa0006500;Name=Msa0006500 |
| chr1_1 | mRNA | 9397611 | 9401152 | 9397611 | ID=Msa0006500-mRNA-1;Parent=Msa0006500;Name=Msa0006500-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.6|0.5|1|0.8|0.83|6|101|275 |
| chr1_1 | exon | 9397611 | 9397846 | 9397611 | ID=Msa0006500-mRNA-1:exon:3384;Parent=Msa0006500-mRNA-1 |
| chr1_1 | exon | 9398612 | 9398656 | 9398612 | ID=Msa0006500-mRNA-1:exon:3383;Parent=Msa0006500-mRNA-1 |
| chr1_1 | exon | 9398961 | 9399143 | 9398961 | ID=Msa0006500-mRNA-1:exon:3382;Parent=Msa0006500-mRNA-1 |
| chr1_1 | exon | 9399221 | 9399304 | 9399221 | ID=Msa0006500-mRNA-1:exon:3381;Parent=Msa0006500-mRNA-1 |
| chr1_1 | exon | 9400689 | 9400868 | 9400689 | ID=Msa0006500-mRNA-1:exon:3380;Parent=Msa0006500-mRNA-1 |
| chr1_1 | exon | 9400952 | 9401152 | 9400952 | ID=Msa0006500-mRNA-1:exon:3379;Parent=Msa0006500-mRNA-1 |
| chr1_1 | CDS | 9400952 | 9401152 | 9400952 | ID=Msa0006500-mRNA-1:cds;Parent=Msa0006500-mRNA-1 |
| chr1_1 | CDS | 9400689 | 9400868 | 9400689 | ID=Msa0006500-mRNA-1:cds;Parent=Msa0006500-mRNA-1 |
| chr1_1 | CDS | 9399221 | 9399304 | 9399221 | ID=Msa0006500-mRNA-1:cds;Parent=Msa0006500-mRNA-1 |
| chr1_1 | CDS | 9398961 | 9399143 | 9398961 | ID=Msa0006500-mRNA-1:cds;Parent=Msa0006500-mRNA-1 |
| chr1_1 | CDS | 9398612 | 9398656 | 9398612 | ID=Msa0006500-mRNA-1:cds;Parent=Msa0006500-mRNA-1 |
| chr1_1 | CDS | 9397712 | 9397846 | 9397712 | ID=Msa0006500-mRNA-1:cds;Parent=Msa0006500-mRNA-1 |
| chr1_1 | three_prime_UTR | 9397611 | 9397711 | 9397611 | ID=Msa0006500-mRNA-1:three_prime_utr;Parent=Msa0006500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
