AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0903250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 56 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTGATTCTTCTGATAAA+TGG 0.133583 6_2:-375465 None:intergenic
CCCAACTAATGACACAAATT+TGG 0.248709 6_2:+375345 Msa0903250:three_prime_UTR
ATTGAATTACTCTGCATAAA+TGG 0.257179 6_2:+374955 Msa0903250:three_prime_UTR
CTATATCATCATTGGAATAA+AGG 0.286797 6_2:+367256 Msa0903250:CDS
TCCAAATTTGTGTCATTAGT+TGG 0.309488 6_2:-375346 None:intergenic
GTGTATTAAACACCATATAC+TGG 0.317315 6_2:+375260 Msa0903250:three_prime_UTR
AATGCATAAACAATGAATTA+AGG 0.327138 6_2:-375426 None:intergenic
GTCAGCCTTCTATAGGTAAA+AGG 0.337174 6_2:+374718 Msa0903250:exon
ACATTGTATGAGAAAATAAA+AGG 0.344510 6_2:-375199 None:intergenic
CCATATGTTGGTAAGATCTA+AGG 0.350016 6_2:-374841 None:intergenic
CAACTTACTAGATAATGATA+TGG 0.352045 6_2:+375300 Msa0903250:three_prime_UTR
CCAAATTTGTGTCATTAGTT+GGG 0.352428 6_2:-375345 None:intergenic
AGTTTCTGTTGACTCTAGTT+TGG 0.353646 6_2:+375130 Msa0903250:three_prime_UTR
ATTCGGCCATGTATATGATA+TGG 0.369935 6_2:+375539 Msa0903250:three_prime_UTR
TATTATGTGATGTACTAATT+CGG 0.370244 6_2:+375522 Msa0903250:three_prime_UTR
AAGTACCTCGGCTCAAACTT+TGG 0.387712 6_2:-373571 None:intergenic
TACGTCATCTTCCCAGTATA+TGG 0.388514 6_2:-375272 None:intergenic
AGTTGATTCTTCTGATAAAT+GGG 0.389001 6_2:-375464 None:intergenic
ACTTACTTGCTAGGAGTTTG+TGG 0.389835 6_2:+375102 Msa0903250:three_prime_UTR
ATCAGAAACTATATCATCAT+TGG 0.405305 6_2:+367248 Msa0903250:CDS
AGGATCCATATTCTTCTTGC+GGG 0.411889 6_2:+367202 Msa0903250:intron
CCTTAGATCTTACCAACATA+TGG 0.415832 6_2:+374841 Msa0903250:three_prime_UTR
TAACCGTGTCAGCCTTCTAT+AGG 0.421797 6_2:+374711 Msa0903250:CDS
TTCTTCTGATAAATGGGAAA+TGG 0.428287 6_2:-375458 None:intergenic
AATAGTCCTGGGGTTCCAAA+TGG 0.430961 6_2:+374905 Msa0903250:three_prime_UTR
CTTGTCATATTTAACTAGCC+TGG 0.435331 6_2:-375023 None:intergenic
ACATAGTTTGATGCTTTGCC+TGG 0.438482 6_2:-374681 None:intergenic
GTGGTCAAACAAGTGAAGTC+AGG 0.448460 6_2:+374999 Msa0903250:three_prime_UTR
GACACAAATTTGGAAGATGA+AGG 0.468448 6_2:+375355 Msa0903250:three_prime_UTR
TCATCTTAAACAAATAGTCC+TGG 0.478036 6_2:+374893 Msa0903250:three_prime_UTR
CAGGATCCATATTCTTCTTG+CGG 0.482231 6_2:+367201 Msa0903250:intron
CATCTTAAACAAATAGTCCT+GGG 0.498432 6_2:+374894 Msa0903250:three_prime_UTR
TAATGAGCAAATAAATAAAG+TGG 0.502962 6_2:-374784 None:intergenic
AGTTTGATGCTTTGCCTGGT+TGG 0.507319 6_2:-374677 None:intergenic
CTATCTATCGAAATATTTAG+TGG 0.509489 6_2:+374980 Msa0903250:three_prime_UTR
TCAAACCCATTTGGAACCCC+AGG 0.510536 6_2:-374911 None:intergenic
ATTTACTCATATCATTTACA+TGG 0.515511 6_2:-375601 None:intergenic
ATAGTCCTGGGGTTCCAAAT+GGG 0.516943 6_2:+374906 Msa0903250:three_prime_UTR
ATTTGAAGATATAGGTGTGT+TGG 0.547778 6_2:+373523 Msa0903250:intron
AAACAAGTGAAGTCAGGGCC+AGG 0.553016 6_2:+375005 Msa0903250:three_prime_UTR
TGTCTGAGTGCTAAGAGGCT+TGG 0.568364 6_2:+374870 Msa0903250:three_prime_UTR
AGATCTTACCAACATATGGT+TGG 0.570655 6_2:+374845 Msa0903250:three_prime_UTR
AGTTAGCCATATCATATACA+TGG 0.591734 6_2:-375545 None:intergenic
TGGTATGTCTGAGTGCTAAG+AGG 0.593927 6_2:+374865 Msa0903250:three_prime_UTR
TGGTCAAACAAGTGAAGTCA+GGG 0.596916 6_2:+375000 Msa0903250:three_prime_UTR
AATGAGCAAATAAATAAAGT+GGG 0.598422 6_2:-374783 None:intergenic
CAGACATACCAACCATATGT+TGG 0.606167 6_2:-374853 None:intergenic
TACTCATATCATTTACATGG+TGG 0.610543 6_2:-375598 None:intergenic
GATCCATATTCTTCTTGCGG+GGG 0.624434 6_2:+367204 Msa0903250:CDS
TGATGATATAGTTTCTGATG+AGG 0.632665 6_2:-367244 None:intergenic
TGTATTAAACACCATATACT+GGG 0.635976 6_2:+375261 Msa0903250:three_prime_UTR
TTACCTATAGAAGGCTGACA+CGG 0.641230 6_2:-374714 None:intergenic
ATATGGGTGTGATTCCAACC+AGG 0.661105 6_2:+374663 Msa0903250:CDS
ATCTTAAACAAATAGTCCTG+GGG 0.665606 6_2:+374895 Msa0903250:three_prime_UTR
GGATCCATATTCTTCTTGCG+GGG 0.665842 6_2:+367203 Msa0903250:intron
CAACTCCAAAGTTTGAGCCG+AGG 0.692489 6_2:+373566 Msa0903250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTATAATTT+TGG - chr6_2:368386-368405 None:intergenic 0.0%
!!! TGTTTTTTTAAAATTGAATT+TGG + chr6_2:366543-366562 Msa0903250:intron 10.0%
!!! TAAGAAAATTTTAACTTTTT+TGG - chr6_2:368149-368168 None:intergenic 10.0%
!!! ATATTTTTTAATTTCTTTCT+CGG - chr6_2:369538-369557 None:intergenic 10.0%
!!! AAACTTTGATTTTTTTTTTA+TGG + chr6_2:370625-370644 Msa0903250:intron 10.0%
!! AAATTGTTAAATATTTGAAT+AGG + chr6_2:370889-370908 Msa0903250:intron 10.0%
!! ATAGATAATATCAAAATAAT+TGG + chr6_2:370943-370962 Msa0903250:intron 10.0%
!!! TATTATATTTGTTACATTTT+TGG + chr6_2:371061-371080 Msa0903250:intron 10.0%
!!! ATTTTATTACATTTTTTCAA+AGG - chr6_2:371565-371584 None:intergenic 10.0%
!! ATATTAAAAAATCAAAGAAA+AGG + chr6_2:371663-371682 Msa0903250:intron 10.0%
!!! GTTTTTAAAAATATAAAAAC+TGG + chr6_2:371999-372018 Msa0903250:intron 10.0%
!! TCAAAAAAAATAAAGTTAAA+TGG + chr6_2:372351-372370 Msa0903250:intron 10.0%
!! ATAGTTAAAAACATAAAAAT+TGG + chr6_2:372693-372712 Msa0903250:intron 10.0%
!! AATAATTTAAAAAAATTGTG+AGG + chr6_2:372754-372773 Msa0903250:intron 10.0%
!! ATAATTTAAAAAAATTGTGA+GGG + chr6_2:372755-372774 Msa0903250:intron 10.0%
!!! ATTTTCATATGAAAAAAATA+AGG + chr6_2:374813-374832 Msa0903250:three_prime_UTR 10.0%
!!! TAAATTTAAGAGTGTATAAA+AGG + chr6_2:366585-366604 Msa0903250:intron 15.0%
!!! TTTTTTGTTTTGTTACAAAA+TGG - chr6_2:366672-366691 None:intergenic 15.0%
!! ATGGTAAATAAAAATGATTA+AGG - chr6_2:367440-367459 None:intergenic 15.0%
!!! TTATAGAGTTAAATATGTTT+TGG + chr6_2:367593-367612 Msa0903250:intron 15.0%
!!! AATATCAACTATTTTAATAC+AGG + chr6_2:367878-367897 Msa0903250:intron 15.0%
!!! ATAAACTAATTTTTGATCTA+GGG - chr6_2:368610-368629 None:intergenic 15.0%
!!! AATTTTTTCTTAGAAATCAT+CGG - chr6_2:369188-369207 None:intergenic 15.0%
!! ATCTATAAGAACATTATAAT+CGG + chr6_2:369210-369229 Msa0903250:intron 15.0%
!!! TTATCAATGTTATTTATTAG+TGG - chr6_2:369577-369596 None:intergenic 15.0%
!! TCAAAACAAAGTTAAAATAA+AGG + chr6_2:370509-370528 Msa0903250:intron 15.0%
!!! TTTTTAAGTTAAATGTTGTT+TGG + chr6_2:370589-370608 Msa0903250:intron 15.0%
!! ATTATCTATGTTATTATTTC+AGG - chr6_2:370932-370951 None:intergenic 15.0%
!! AGAAAGCAAATAAAAATATT+TGG + chr6_2:371441-371460 Msa0903250:intron 15.0%
!! CTTAAAAAAATTAAATGGAA+CGG + chr6_2:371598-371617 Msa0903250:intron 15.0%
!!! TTTTAATGCATAAAATTGAA+TGG - chr6_2:371784-371803 None:intergenic 15.0%
!! TACTTAATTGATATTGTATT+TGG + chr6_2:371825-371844 Msa0903250:intron 15.0%
!! GGAAAATAGTTAAAAAAAAT+CGG + chr6_2:372020-372039 Msa0903250:intron 15.0%
!! AGAAAGGAAATAAAAATATT+TGG + chr6_2:372170-372189 Msa0903250:intron 15.0%
!!! TTTTAATGCATAAAATTGAA+CGG - chr6_2:371784-371803 None:intergenic 15.0%
!! TAATTTAAAAAAATTGTGAG+GGG + chr6_2:372756-372775 Msa0903250:intron 15.0%
!!! CATTTTTGTAATTTTCTAAT+TGG - chr6_2:372834-372853 None:intergenic 15.0%
!! AATAGAAAATTTCCTATATT+GGG - chr6_2:373284-373303 None:intergenic 15.0%
!! AAATAGAAAATTTCCTATAT+TGG - chr6_2:373285-373304 None:intergenic 15.0%
!!! AATTTTGGTTTTTAATGAAA+TGG + chr6_2:373335-373354 Msa0903250:intron 15.0%
!!! ATTTTGGTTTTTAATGAAAT+GGG + chr6_2:373336-373355 Msa0903250:intron 15.0%
!!! TTATAATCAATTATTTCTTG+AGG + chr6_2:374050-374069 Msa0903250:intron 15.0%
!!! TCAATGATCAATTTAATTTA+AGG - chr6_2:374095-374114 None:intergenic 15.0%
!! ACAATAATTTCTAATAGTTT+AGG + chr6_2:374211-374230 Msa0903250:intron 15.0%
!! AAAATAAAAGGTTTACTTAT+AGG + chr6_2:374330-374349 Msa0903250:intron 15.0%
!! ACTCTAAATGTTTCTTAATA+TGG - chr6_2:366482-366501 None:intergenic 20.0%
!!! TTCAAAATCTATTTTTGTCA+TGG - chr6_2:366518-366537 None:intergenic 20.0%
!! AAAATCAAATGTTTACTACT+GGG - chr6_2:367345-367364 None:intergenic 20.0%
!! TAAAATCAAATGTTTACTAC+TGG - chr6_2:367346-367365 None:intergenic 20.0%
!! GGTGGTAAAAAAAAAAATTA+GGG - chr6_2:367682-367701 None:intergenic 20.0%
!! TGGTGGTAAAAAAAAAAATT+AGG - chr6_2:367683-367702 None:intergenic 20.0%
!! TGCAATATATATAAGTCATA+TGG - chr6_2:367906-367925 None:intergenic 20.0%
!! TATAATCAGTTTATGAGATT+AGG + chr6_2:368281-368300 Msa0903250:intron 20.0%
!! TAGGAATTGACATAATATTT+AGG + chr6_2:368300-368319 Msa0903250:intron 20.0%
!!! ATATTTAGGATGAAAACAAT+TGG + chr6_2:368314-368333 Msa0903250:intron 20.0%
!!! GATAAACTAATTTTTGATCT+AGG - chr6_2:368611-368630 None:intergenic 20.0%
!!! ATTTTTTCTTAGAAATCATC+GGG - chr6_2:369187-369206 None:intergenic 20.0%
!!! ATTTCGTTTTAAGTCATTTA+AGG - chr6_2:369312-369331 None:intergenic 20.0%
!! ATAACATTGATAAATCATGA+AGG + chr6_2:369584-369603 Msa0903250:intron 20.0%
!!! TGATTGATGTAAATTTGTTT+TGG - chr6_2:369960-369979 None:intergenic 20.0%
!!! ACAATTGTTATTTTATCTTC+TGG - chr6_2:370104-370123 None:intergenic 20.0%
!!! TTTTTTTCTTCAATTGTTAG+CGG - chr6_2:370239-370258 None:intergenic 20.0%
!!! GATTTTTTTTTTATGGTGTT+CGG + chr6_2:370632-370651 Msa0903250:intron 20.0%
!!! ATTTTTTTTTTATGGTGTTC+GGG + chr6_2:370633-370652 Msa0903250:intron 20.0%
!!! ATGTTTAAAATATTTCCTGA+AGG + chr6_2:370764-370783 Msa0903250:intron 20.0%
!!! CATAGTTTGTTACAATATAA+AGG + chr6_2:371135-371154 Msa0903250:intron 20.0%
!! ACCTCCTTAAAAAAATTAAA+TGG + chr6_2:371593-371612 Msa0903250:intron 20.0%
!!! TCCATTTAATTTTTTTAAGG+AGG - chr6_2:371597-371616 None:intergenic 20.0%
!!! CGTTCCATTTAATTTTTTTA+AGG - chr6_2:371600-371619 None:intergenic 20.0%
!! AACGGTTCAAAAAAAATTAA+TGG + chr6_2:371616-371635 Msa0903250:intron 20.0%
!! AATTAAGTACTCAGTATAAA+AGG - chr6_2:371814-371833 None:intergenic 20.0%
!! AGAGAAGTTGAAAAAAAAAA+AGG + chr6_2:371870-371889 Msa0903250:intron 20.0%
!! GAGAAGTTGAAAAAAAAAAA+GGG + chr6_2:371871-371890 Msa0903250:intron 20.0%
!! AGAAGTTGAAAAAAAAAAAG+GGG + chr6_2:371872-371891 Msa0903250:intron 20.0%
!!! TTCCATTTAATTTTTTAAGG+GGG - chr6_2:372327-372346 None:intergenic 20.0%
!!! GTTCCATTTAATTTTTTAAG+GGG - chr6_2:372328-372347 None:intergenic 20.0%
!!! CGTTCCATTTAATTTTTTAA+GGG - chr6_2:372329-372348 None:intergenic 20.0%
!! CCTTAAAAAATTAAATGGAA+CGG + chr6_2:372327-372346 Msa0903250:intron 20.0%
!!! TTTGTAATTTTCTAATTGGT+GGG - chr6_2:372830-372849 None:intergenic 20.0%
!!! TTTTGTAATTTTCTAATTGG+TGG - chr6_2:372831-372850 None:intergenic 20.0%
!! ATAGAAAATTTCCTATATTG+GGG - chr6_2:373283-373302 None:intergenic 20.0%
!!! TCTATTTTCTATTTGTTAAC+TGG + chr6_2:373298-373317 Msa0903250:intron 20.0%
!!! ATTTGTTGAAAATTAGAGTT+TGG + chr6_2:373389-373408 Msa0903250:intron 20.0%
!! TAAAAACTAATACCATGAAA+GGG - chr6_2:373493-373512 None:intergenic 20.0%
!! CAAAAAAAAAAAACTGTGAA+AGG + chr6_2:373701-373720 Msa0903250:intron 20.0%
!!! TAGAATTTTTTTGAAACCAT+AGG + chr6_2:373818-373837 Msa0903250:intron 20.0%
!!! TTAGGAGAGAATTTTAAATT+AGG + chr6_2:373846-373865 Msa0903250:intron 20.0%
!!! GATTGATAGTTAAATTTCTA+CGG + chr6_2:374118-374137 Msa0903250:intron 20.0%
!!! GTTTTGTGAGTTAAAATAAA+AGG + chr6_2:374318-374337 Msa0903250:intron 20.0%
!!! TTGTTATTGATGATTAGTAA+AGG + chr6_2:374464-374483 Msa0903250:intron 20.0%
!!! TTTTTATGACAGTTACAATA+TGG + chr6_2:374646-374665 Msa0903250:intron 20.0%
!!! TTTTATGACAGTTACAATAT+GGG + chr6_2:374647-374666 Msa0903250:intron 20.0%
!! AATGAGCAAATAAATAAAGT+GGG - chr6_2:374786-374805 None:intergenic 20.0%
!! TAATGAGCAAATAAATAAAG+TGG - chr6_2:374787-374806 None:intergenic 20.0%
!!! TTTTTTATTTCAAACCCATT+TGG - chr6_2:374923-374942 None:intergenic 20.0%
!! ACATTGTATGAGAAAATAAA+AGG - chr6_2:375202-375221 None:intergenic 20.0%
!!! GTTTTATGTGATATCTTTAT+TGG + chr6_2:375220-375239 Msa0903250:three_prime_UTR 20.0%
!! AATGCATAAACAATGAATTA+AGG - chr6_2:375429-375448 None:intergenic 20.0%
!! TATTATGTGATGTACTAATT+CGG + chr6_2:375522-375541 Msa0903250:three_prime_UTR 20.0%
!! ATTTACTCATATCATTTACA+TGG - chr6_2:375604-375623 None:intergenic 20.0%
! AAAAATCTAGTAGAATTGAG+GGG - chr6_2:366443-366462 None:intergenic 25.0%
! GAAAAATCTAGTAGAATTGA+GGG - chr6_2:366444-366463 None:intergenic 25.0%
! TGAAAAATCTAGTAGAATTG+AGG - chr6_2:366445-366464 None:intergenic 25.0%
!! AGAAACATTTAGAGTTTGTT+TGG + chr6_2:366487-366506 Msa0903250:intron 25.0%
!!! TTTGTTTTGTTACAAAATGG+CGG - chr6_2:366669-366688 None:intergenic 25.0%
! CAAGTTTGAATCAATTTAAG+AGG + chr6_2:366723-366742 Msa0903250:intron 25.0%
! TGTATATCATAGAACAATAG+TGG + chr6_2:366970-366989 Msa0903250:intron 25.0%
! ATCAGAAACTATATCATCAT+TGG + chr6_2:367248-367267 Msa0903250:CDS 25.0%
! CTATATCATCATTGGAATAA+AGG + chr6_2:367256-367275 Msa0903250:CDS 25.0%
! CACATATATACATACTTCAA+AGG - chr6_2:367534-367553 None:intergenic 25.0%
!!! ATGTTTTAATCTTGATCCTA+GGG - chr6_2:367558-367577 None:intergenic 25.0%
!!! AATGTTTTAATCTTGATCCT+AGG - chr6_2:367559-367578 None:intergenic 25.0%
!!! TTTTTTTTTACCACCACTTA+CGG + chr6_2:367687-367706 Msa0903250:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr6_2:368085-368104 Msa0903250:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr6_2:368085-368104 None:intergenic 25.0%
! AAGAAGAGATATTAAAACGA+CGG + chr6_2:368211-368230 Msa0903250:intron 25.0%
! AAAACAATTGGAACCAATAA+AGG + chr6_2:368326-368345 Msa0903250:intron 25.0%
! AATCATAATTCACACATCAT+TGG - chr6_2:368354-368373 None:intergenic 25.0%
! TGTTATAGAGTTACCAAAAA+AGG + chr6_2:368417-368436 Msa0903250:intron 25.0%
! ATTTCATCCGATGTAAATAT+GGG - chr6_2:368450-368469 None:intergenic 25.0%
! ATGAACACCAAATCTTTATT+TGG + chr6_2:368550-368569 Msa0903250:intron 25.0%
!! TGAACACCAAATCTTTATTT+GGG + chr6_2:368551-368570 Msa0903250:intron 25.0%
!! ACTTGAACATGCATATTTTT+AGG + chr6_2:368578-368597 Msa0903250:intron 25.0%
!! TATAGTTGATGTAACACTAT+GGG - chr6_2:368993-369012 None:intergenic 25.0%
!! TTATAGTTGATGTAACACTA+TGG - chr6_2:368994-369013 None:intergenic 25.0%
!! TTCAAAACTGACGTTTTATA+TGG - chr6_2:369272-369291 None:intergenic 25.0%
!!! AATCCTTTTAAGGTTGTTTT+TGG - chr6_2:369389-369408 None:intergenic 25.0%
!! CATTGCATTTAATCCTTTTA+AGG - chr6_2:369399-369418 None:intergenic 25.0%
! AATAACTCGATATAGAGAAT+TGG - chr6_2:369492-369511 None:intergenic 25.0%
! TAATTTCTTTCTCGGATTTA+GGG - chr6_2:369530-369549 None:intergenic 25.0%
! TTAATTTCTTTCTCGGATTT+AGG - chr6_2:369531-369550 None:intergenic 25.0%
!! TCAAAAATGATTTGGACATT+TGG - chr6_2:369730-369749 None:intergenic 25.0%
! TAAGGATCTCAAAAATGATT+TGG - chr6_2:369738-369757 None:intergenic 25.0%
! AAGTGATTATGACTACATTA+AGG - chr6_2:369756-369775 None:intergenic 25.0%
!! AAATTTGTGCATTTAAGATC+AGG - chr6_2:369902-369921 None:intergenic 25.0%
!! TTTCTGTATCATCAACTTTT+TGG + chr6_2:369919-369938 Msa0903250:intron 25.0%
!! GCAGTAACATTTTTCATATT+TGG - chr6_2:370019-370038 None:intergenic 25.0%
! ATGAAAAATGTTACTGCTTT+AGG + chr6_2:370022-370041 Msa0903250:intron 25.0%
!!! AATGATTGAATTTTAGCTCA+TGG - chr6_2:370139-370158 None:intergenic 25.0%
!! AAAAATCTTCCTTTGTTATG+TGG - chr6_2:370179-370198 None:intergenic 25.0%
!! TTCAAGATTCTGCATTTTAA+GGG - chr6_2:370273-370292 None:intergenic 25.0%
!! TTTCAAGATTCTGCATTTTA+AGG - chr6_2:370274-370293 None:intergenic 25.0%
! AAAATGCAGAATCTTGAAAA+AGG + chr6_2:370275-370294 Msa0903250:intron 25.0%
! AAATGCAGAATCTTGAAAAA+GGG + chr6_2:370276-370295 Msa0903250:intron 25.0%
!!! TTTAGTTTTTGCTTCATCAT+AGG - chr6_2:370312-370331 None:intergenic 25.0%
!!! CTTTGTTTTGAAGTAACTTT+TGG - chr6_2:370500-370519 None:intergenic 25.0%
!! AACTTTAGCTTCTTTCTTAA+AGG - chr6_2:370535-370554 None:intergenic 25.0%
! AGAAAGAAGCTAAAGTTATT+TGG + chr6_2:370538-370557 Msa0903250:intron 25.0%
!!! TTTTTTTTTTATGGTGTTCG+GGG + chr6_2:370634-370653 Msa0903250:intron 25.0%
!!! TTTTAACATTTTTAGCCTTC+AGG - chr6_2:370782-370801 None:intergenic 25.0%
!! AAGTAACATTCAACAACTTT+TGG + chr6_2:371746-371765 Msa0903250:intron 25.0%
!!! TACATTTTTAAGGAGAAGTT+AGG - chr6_2:371851-371870 None:intergenic 25.0%
!! TCAACTTCTCTACATTTTTA+AGG - chr6_2:371861-371880 None:intergenic 25.0%
! AAAAAAAAAAAGGGGTCAAA+CGG + chr6_2:371880-371899 Msa0903250:intron 25.0%
! CTGAATTTGAGAGAAAAAAT+TGG + chr6_2:371938-371957 Msa0903250:intron 25.0%
! ATAGTTAAAAAAAATCGGTG+AGG + chr6_2:372025-372044 Msa0903250:intron 25.0%
!!! TAATCATTTTTAGTGTTGCT+TGG - chr6_2:372061-372080 None:intergenic 25.0%
! GTAACAAAAAAACAAACAGA+CGG + chr6_2:372092-372111 Msa0903250:intron 25.0%
! AACCCCCTTAAAAAATTAAA+TGG + chr6_2:372322-372341 Msa0903250:intron 25.0%
!!! CCGTTCCATTTAATTTTTTA+AGG - chr6_2:372330-372349 None:intergenic 25.0%
!! AAGTAACATTCAACAACTTT+TGG + chr6_2:371746-371765 Msa0903250:intron 25.0%
!!! TACATTTTTAAGGAGAAGTT+AGG - chr6_2:371851-371870 None:intergenic 25.0%
! TGTTAGTAGATGTTAATACT+TGG + chr6_2:372905-372924 Msa0903250:intron 25.0%
!!! AAATGGGTTTGTTGAAATTT+TGG + chr6_2:373352-373371 Msa0903250:intron 25.0%
! AAAATTAGAGTTTGGTTAGT+GGG + chr6_2:373397-373416 Msa0903250:intron 25.0%
! GTAAAAACTAATACCATGAA+AGG - chr6_2:373494-373513 None:intergenic 25.0%
! GTGATGTAATTTGAAGATAT+AGG + chr6_2:373515-373534 Msa0903250:intron 25.0%
! ACTAACTTGAACAATCTATT+TGG + chr6_2:373761-373780 Msa0903250:intron 25.0%
!! ATTATTTCTTGAGGTTTCTT+TGG + chr6_2:374059-374078 Msa0903250:intron 25.0%
! TTAAATTACCAAAACCAGTT+CGG - chr6_2:374412-374431 None:intergenic 25.0%
! TTGGGATCTAGTTAATTTAT+TGG + chr6_2:374577-374596 Msa0903250:intron 25.0%
! ATTGAATTACTCTGCATAAA+TGG + chr6_2:374955-374974 Msa0903250:three_prime_UTR 25.0%
! CTATCTATCGAAATATTTAG+TGG + chr6_2:374980-374999 Msa0903250:three_prime_UTR 25.0%
!!! TTTTAGTTTACTTACTTGCT+AGG + chr6_2:375093-375112 Msa0903250:three_prime_UTR 25.0%
! TGTATTAAACACCATATACT+GGG + chr6_2:375261-375280 Msa0903250:three_prime_UTR 25.0%
! CAACTTACTAGATAATGATA+TGG + chr6_2:375300-375319 Msa0903250:three_prime_UTR 25.0%
!! AGTTGATTCTTCTGATAAAT+GGG - chr6_2:375467-375486 None:intergenic 25.0%
!! AAGTTGATTCTTCTGATAAA+TGG - chr6_2:375468-375487 None:intergenic 25.0%
AAAATCTAGTAGAATTGAGG+GGG - chr6_2:366442-366461 None:intergenic 30.0%
TGTATGTTTGCTTCCATATT+TGG - chr6_2:366825-366844 None:intergenic 30.0%
ATCTTCTCATCAATCACATT+AGG + chr6_2:366859-366878 Msa0903250:intron 30.0%
AATACAATCCACCATATCAA+AGG - chr6_2:367060-367079 None:intergenic 30.0%
GAAGAGATTAATGTTCTTTC+AGG + chr6_2:367182-367201 Msa0903250:intron 30.0%
TGATGATATAGTTTCTGATG+AGG - chr6_2:367247-367266 None:intergenic 30.0%
GTAATATAGATTCAGGATCA+GGG - chr6_2:367472-367491 None:intergenic 30.0%
TGTAATATAGATTCAGGATC+AGG - chr6_2:367473-367492 None:intergenic 30.0%
ACAAGGTGTAATATAGATTC+AGG - chr6_2:367479-367498 None:intergenic 30.0%
! ACGAGAAGTTTTTATCAACA+AGG - chr6_2:367496-367515 None:intergenic 30.0%
ATATACATACTTCAAAGGAC+TGG - chr6_2:367529-367548 None:intergenic 30.0%
GTTCAATAACATACTTCATC+TGG + chr6_2:368028-368047 Msa0903250:intron 30.0%
! TTTTTATTGAATACTCCCTC+TGG - chr6_2:368181-368200 None:intergenic 30.0%
ACTGATACCCATATTTACAT+CGG + chr6_2:368440-368459 Msa0903250:intron 30.0%
GATTTCATCCGATGTAAATA+TGG - chr6_2:368451-368470 None:intergenic 30.0%
!!! TGAACATGCATATTTTTAGG+TGG + chr6_2:368581-368600 Msa0903250:intron 30.0%
AGTTACGAAAAATACTTAGG+CGG - chr6_2:368677-368696 None:intergenic 30.0%
GCAAGTTACGAAAAATACTT+AGG - chr6_2:368680-368699 None:intergenic 30.0%
! GGACATTTCTAAAAAGAACA+CGG - chr6_2:368772-368791 None:intergenic 30.0%
AATGTCCTTGATATCTCATT+TGG + chr6_2:368785-368804 Msa0903250:intron 30.0%
ATGTCCTTGATATCTCATTT+GGG + chr6_2:368786-368805 Msa0903250:intron 30.0%
! TATTGTGAAAGAGATGGATT+TGG - chr6_2:368871-368890 None:intergenic 30.0%
AAGAACTCAAGGTAAATAGA+TGG + chr6_2:368940-368959 Msa0903250:intron 30.0%
GATGGTAAATGATAAAGTTG+CGG + chr6_2:368958-368977 Msa0903250:intron 30.0%
!!! TTTAAGGTTGTTTTTGGTTC+TGG - chr6_2:369383-369402 None:intergenic 30.0%
GAACCAAAAACAACCTTAAA+AGG + chr6_2:369383-369402 Msa0903250:intron 30.0%
GACATTTGGAAAATAGGATT+TGG - chr6_2:369716-369735 None:intergenic 30.0%
GATTTGGACATTTGGAAAAT+AGG - chr6_2:369722-369741 None:intergenic 30.0%
TCGATATCAGAATGAACAAA+GGG - chr6_2:369830-369849 None:intergenic 30.0%
TTCGATATCAGAATGAACAA+AGG - chr6_2:369831-369850 None:intergenic 30.0%
!! TTAAGATCAGGTTGATTTGA+TGG - chr6_2:369890-369909 None:intergenic 30.0%
!!! TTGTTTTGGTCATATCATTG+AGG - chr6_2:369946-369965 None:intergenic 30.0%
TACATCAATCAACTTTCGTA+CGG + chr6_2:369969-369988 Msa0903250:intron 30.0%
!!! TTGAATTTTAGCTCATGGTA+AGG - chr6_2:370134-370153 None:intergenic 30.0%
TACTATACTCCACATAACAA+AGG + chr6_2:370167-370186 Msa0903250:intron 30.0%
ACAGAAATTGTTATGTTGCA+TGG - chr6_2:370208-370227 None:intergenic 30.0%
!! CATGAGTTGACTGATTTTTA+TGG - chr6_2:370362-370381 None:intergenic 30.0%
!! CCATTTTCTTCCTTTTTTCA+TGG - chr6_2:370403-370422 None:intergenic 30.0%
CCATGAAAAAAGGAAGAAAA+TGG + chr6_2:370400-370419 Msa0903250:intron 30.0%
TTCACTTTCTTCTTCATAAG+AGG - chr6_2:370426-370445 None:intergenic 30.0%
! GCTAAAGTTATTTGGTTTCT+TGG + chr6_2:370546-370565 Msa0903250:intron 30.0%
GTGAGTTTAACTCAAAAGAT+AGG - chr6_2:370697-370716 None:intergenic 30.0%
TGAATAGGAGAAACAATTTG+AGG + chr6_2:370904-370923 Msa0903250:intron 30.0%
CGTGAATAAAAATATTTGCG+AGG + chr6_2:371480-371499 Msa0903250:intron 30.0%
ATATTCACGAAGTTGAAGAA+AGG + chr6_2:372154-372173 Msa0903250:intron 30.0%
CGTGAATAAAAGAATTTGTG+AGG + chr6_2:372209-372228 Msa0903250:intron 30.0%
! CCAACTTCTCTACATTTTTA+AGG - chr6_2:372593-372612 None:intergenic 30.0%
CCTTAAAAATGTAGAGAAGT+TGG + chr6_2:371858-371877 Msa0903250:intron 30.0%
!! TAGAGAAGTTGGTAAAAAGT+CGG + chr6_2:372601-372620 Msa0903250:intron 30.0%
AATGAAGAAGCAACTGAATT+TGG + chr6_2:372655-372674 Msa0903250:intron 30.0%
TTGCCATCTCACTATTATAT+GGG - chr6_2:372798-372817 None:intergenic 30.0%
! GCTGCTCTTTATTGAAATTT+TGG + chr6_2:373320-373339 Msa0903250:intron 30.0%
GAAAATTAGAGTTTGGTTAG+TGG + chr6_2:373396-373415 Msa0903250:intron 30.0%
ATTTGAAGATATAGGTGTGT+TGG + chr6_2:373523-373542 Msa0903250:intron 30.0%
TCTACCATGAACAACTTATT+GGG - chr6_2:373735-373754 None:intergenic 30.0%
!!! CTGTTTTGTTTGTATGTTAC+AGG + chr6_2:373786-373805 Msa0903250:intron 30.0%
TTGAAACCATAGGAGATATT+AGG + chr6_2:373828-373847 Msa0903250:intron 30.0%
TATTCACATATAAGAGTTGC+AGG + chr6_2:373883-373902 Msa0903250:intron 30.0%
TGATAGTTAAATTTCTACGG+TGG + chr6_2:374121-374140 Msa0903250:intron 30.0%
TAAGATCATTCGATAACCTT+TGG - chr6_2:374263-374282 None:intergenic 30.0%
GTTATCGAATGATCTTAAGT+TGG + chr6_2:374266-374285 Msa0903250:intron 30.0%
AAAGGTTTACTTATAGGTGA+AGG + chr6_2:374336-374355 Msa0903250:intron 30.0%
ACCATTGCTAATTATTCCAA+TGG - chr6_2:374366-374385 None:intergenic 30.0%
TAAATTACCAAAACCAGTTC+GGG - chr6_2:374411-374430 None:intergenic 30.0%
GATATTAACAGCTTGTACAA+TGG + chr6_2:374438-374457 Msa0903250:intron 30.0%
TCATCTTAAACAAATAGTCC+TGG + chr6_2:374893-374912 Msa0903250:three_prime_UTR 30.0%
CATCTTAAACAAATAGTCCT+GGG + chr6_2:374894-374913 Msa0903250:three_prime_UTR 30.0%
ATCTTAAACAAATAGTCCTG+GGG + chr6_2:374895-374914 Msa0903250:three_prime_UTR 30.0%
GTGTATTAAACACCATATAC+TGG + chr6_2:375260-375279 Msa0903250:three_prime_UTR 30.0%
! CCAAATTTGTGTCATTAGTT+GGG - chr6_2:375348-375367 None:intergenic 30.0%
! TCCAAATTTGTGTCATTAGT+TGG - chr6_2:375349-375368 None:intergenic 30.0%
TTCTTCTGATAAATGGGAAA+TGG - chr6_2:375461-375480 None:intergenic 30.0%
AGTTAGCCATATCATATACA+TGG - chr6_2:375548-375567 None:intergenic 30.0%
TACTCATATCATTTACATGG+TGG - chr6_2:375601-375620 None:intergenic 30.0%
!! GAGTGTATAAAAGGTACTTG+TGG + chr6_2:366594-366613 Msa0903250:intron 35.0%
AAAATTGCCTCCTCCAAATA+TGG + chr6_2:366809-366828 Msa0903250:intron 35.0%
ATGTTTGCTTCCATATTTGG+AGG - chr6_2:366822-366841 None:intergenic 35.0%
AAACCAATGTCGTCAAATAG+AGG - chr6_2:366930-366949 None:intergenic 35.0%
! ATCATAGCAATAGCGGAATT+TGG - chr6_2:367001-367020 None:intergenic 35.0%
CTAGAACATCATAGCAATAG+CGG - chr6_2:367008-367027 None:intergenic 35.0%
AAACGAATGTCGTCAAATAG+TGG - chr6_2:367033-367052 None:intergenic 35.0%
! TTCGTTTTCCTCCTTTGATA+TGG + chr6_2:367046-367065 Msa0903250:intron 35.0%
AACCTCAACCATTTCACAAA+CGG + chr6_2:367367-367386 Msa0903250:intron 35.0%
CTCAAGCAAATCTCTAAGTA+AGG - chr6_2:367415-367434 None:intergenic 35.0%
GTATGTATATATGTGACCCT+AGG + chr6_2:367539-367558 Msa0903250:intron 35.0%
TAAAAAACAGAGACCGTAAG+TGG - chr6_2:367703-367722 None:intergenic 35.0%
! TTTCTTACATTTGAGACCAG+AGG + chr6_2:368162-368181 Msa0903250:intron 35.0%
! TTCTTACATTTGAGACCAGA+GGG + chr6_2:368163-368182 Msa0903250:intron 35.0%
!! CACATCATTGGTTCCTTTAT+TGG - chr6_2:368342-368361 None:intergenic 35.0%
!!! TATGGGTATCAGTCCTTTTT+TGG - chr6_2:368433-368452 None:intergenic 35.0%
ATCAAGCAAAGAAGTAGCAT+CGG + chr6_2:368468-368487 Msa0903250:intron 35.0%
GAGTGAAGATAATCTAGTCT+AGG + chr6_2:368492-368511 Msa0903250:intron 35.0%
! CTAGTCTAGGATTAGAGTTA+AGG + chr6_2:368505-368524 Msa0903250:intron 35.0%
GTCGTTCCCAAATAAAGATT+TGG - chr6_2:368560-368579 None:intergenic 35.0%
CTACCTCTAACATATGTTCT+CGG + chr6_2:368633-368652 Msa0903250:intron 35.0%
!! GTATAAGTGTCGCTTGATAA+TGG - chr6_2:368711-368730 None:intergenic 35.0%
TCGACAAACAAGCTCAAAAA+AGG - chr6_2:368733-368752 None:intergenic 35.0%
ACTTCCCAAATGAGATATCA+AGG - chr6_2:368793-368812 None:intergenic 35.0%
! TCTAGCCATTGACTACAAAA+TGG + chr6_2:368912-368931 Msa0903250:intron 35.0%
! TGCTTCCATTTTGTAGTCAA+TGG - chr6_2:368920-368939 None:intergenic 35.0%
AAATGGAAGCAAAGAACTCA+AGG + chr6_2:368929-368948 Msa0903250:intron 35.0%
AACTATAATCCCACTGCATA+AGG + chr6_2:369006-369025 Msa0903250:intron 35.0%
CATAAGGAAAGACATCTTTC+AGG + chr6_2:369022-369041 Msa0903250:intron 35.0%
TTCAACACAATGTTCGTACA+CGG + chr6_2:369113-369132 Msa0903250:intron 35.0%
TTGTCAAAACAACGCCAATT+GGG - chr6_2:369151-369170 None:intergenic 35.0%
ATTGTCAAAACAACGCCAAT+TGG - chr6_2:369152-369171 None:intergenic 35.0%
!!! TGTTTTTGGTTCTGGTACAA+AGG - chr6_2:369375-369394 None:intergenic 35.0%
GATATAGAGAATTGGAGCAT+TGG - chr6_2:369484-369503 None:intergenic 35.0%
GCTCATTATTTGTGATGCAA+AGG - chr6_2:369642-369661 None:intergenic 35.0%
TGTTATGTGGAGTATAGTAG+AGG - chr6_2:370166-370185 None:intergenic 35.0%
! AGTTTTTGCTTCATCATAGG+TGG - chr6_2:370309-370328 None:intergenic 35.0%
!! ACTGATTTTTATGGCTTCAG+GGG - chr6_2:370353-370372 None:intergenic 35.0%
!! GACTGATTTTTATGGCTTCA+GGG - chr6_2:370354-370373 None:intergenic 35.0%
!! TGACTGATTTTTATGGCTTC+AGG - chr6_2:370355-370374 None:intergenic 35.0%
GGTCTTAGAACCATGAAAAA+AGG + chr6_2:370390-370409 Msa0903250:intron 35.0%
TTTGGACCGTAAAAAACCTT+GGG - chr6_2:370482-370501 None:intergenic 35.0%
! TTTTGGACCGTAAAAAACCT+TGG - chr6_2:370483-370502 None:intergenic 35.0%
ATAAATATATGCCAAGTCCG+AGG - chr6_2:370666-370685 None:intergenic 35.0%
!!! TCTTTTGAGTTAAACTCACG+AGG + chr6_2:370698-370717 Msa0903250:intron 35.0%
ATCTCTCTTCAATTCACGTT+TGG - chr6_2:371691-371710 None:intergenic 35.0%
AAATTGAATGGAACGAGCTT+TGG - chr6_2:371772-371791 None:intergenic 35.0%
AAATTGAACGGAATGAGCTT+TGG - chr6_2:372505-372524 None:intergenic 35.0%
!! AGAGAAGTTGGTAAAAAGTC+GGG + chr6_2:372602-372621 Msa0903250:intron 35.0%
AAAAATTGTGAGGGGCAAAA+TGG + chr6_2:372764-372783 Msa0903250:intron 35.0%
AAAATTGTGAGGGGCAAAAT+GGG + chr6_2:372765-372784 Msa0903250:intron 35.0%
GTTGCCATCTCACTATTATA+TGG - chr6_2:372799-372818 None:intergenic 35.0%
! ATTTTCTAATTGGTGGGATG+TGG - chr6_2:372824-372843 None:intergenic 35.0%
GGCAAAATGGGAAATTCATA+GGG + chr6_2:372865-372884 Msa0903250:intron 35.0%
GGAGTGATGATACATAAACA+GGG - chr6_2:373028-373047 None:intergenic 35.0%
!! TCTTTCTCAGCTTTGTTTCA+CGG + chr6_2:373212-373231 Msa0903250:intron 35.0%
!! TCAGCTTTATTCCCCAATAT+AGG + chr6_2:373269-373288 Msa0903250:intron 35.0%
TCTTGTATCTTTCCCTTTCA+TGG + chr6_2:373478-373497 Msa0903250:intron 35.0%
!! CCATTCTATCAAAAGTACCT+CGG - chr6_2:373586-373605 None:intergenic 35.0%
ATATCACAACCATGACCTAT+TGG + chr6_2:373645-373664 Msa0903250:intron 35.0%
AAGATGTTGACACTCCTAAA+AGG - chr6_2:373672-373691 None:intergenic 35.0%
CTACCATGAACAACTTATTG+GGG - chr6_2:373734-373753 None:intergenic 35.0%
CTCTACCATGAACAACTTAT+TGG - chr6_2:373736-373755 None:intergenic 35.0%
TTCTCTCCTAATATCTCCTA+TGG - chr6_2:373837-373856 None:intergenic 35.0%
TAACCTTATCATGAAAGACC+TGG + chr6_2:373921-373940 Msa0903250:intron 35.0%
GAATGAGATGCTCATAATCA+AGG + chr6_2:373963-373982 Msa0903250:intron 35.0%
! GTCTTGCTACTTATTTGTGA+AGG + chr6_2:374009-374028 Msa0903250:intron 35.0%
ATTTCTTGAGGTTTCTTTGG+TGG + chr6_2:374062-374081 Msa0903250:intron 35.0%
TATAGTAACCAGTGATCACA+TGG + chr6_2:374155-374174 Msa0903250:intron 35.0%
! TTTTATGTCCATGTGATCAC+TGG - chr6_2:374166-374185 None:intergenic 35.0%
!!! GTTTTGAGTTGTTTCACCAA+AGG + chr6_2:374244-374263 Msa0903250:intron 35.0%
GCCATTGGAATAATTAGCAA+TGG + chr6_2:374362-374381 Msa0903250:intron 35.0%
GGAATAATTAGCAATGGTTG+TGG + chr6_2:374368-374387 Msa0903250:intron 35.0%
! GTGTTCCTTTTACCTATAGA+AGG - chr6_2:374726-374745 None:intergenic 35.0%
! CCATATGTTGGTAAGATCTA+AGG - chr6_2:374844-374863 None:intergenic 35.0%
CCTTAGATCTTACCAACATA+TGG + chr6_2:374841-374860 Msa0903250:three_prime_UTR 35.0%
AGATCTTACCAACATATGGT+TGG + chr6_2:374845-374864 Msa0903250:three_prime_UTR 35.0%
CTTGTCATATTTAACTAGCC+TGG - chr6_2:375026-375045 None:intergenic 35.0%
!! AGTTTCTGTTGACTCTAGTT+TGG + chr6_2:375130-375149 Msa0903250:three_prime_UTR 35.0%
CCCAACTAATGACACAAATT+TGG + chr6_2:375345-375364 Msa0903250:three_prime_UTR 35.0%
GACACAAATTTGGAAGATGA+AGG + chr6_2:375355-375374 Msa0903250:three_prime_UTR 35.0%
ATTCGGCCATGTATATGATA+TGG + chr6_2:375539-375558 Msa0903250:three_prime_UTR 35.0%
TTTGCTTCCATATTTGGAGG+AGG - chr6_2:366819-366838 None:intergenic 40.0%
ATTAGGAGTAATGTGACCGA+CGG + chr6_2:366876-366895 Msa0903250:intron 40.0%
ATAGCATAGCGAAATTCCGT+CGG - chr6_2:366895-366914 None:intergenic 40.0%
! GTTTTCCTCCTTTGATATGG+TGG + chr6_2:367049-367068 Msa0903250:intron 40.0%
ACAATCCACCATATCAAAGG+AGG - chr6_2:367057-367076 None:intergenic 40.0%
!! TGGTGGATTGTATTGCATAG+TGG + chr6_2:367066-367085 Msa0903250:intron 40.0%
AAACTTGCCAGAGACGTAAA+TGG - chr6_2:367137-367156 None:intergenic 40.0%
CAGGATCCATATTCTTCTTG+CGG + chr6_2:367201-367220 Msa0903250:intron 40.0%
AGGATCCATATTCTTCTTGC+GGG + chr6_2:367202-367221 Msa0903250:intron 40.0%
AACCGTTTGTGAAATGGTTG+AGG - chr6_2:367372-367391 None:intergenic 40.0%
GAGTACAACCGTTTGTGAAA+TGG - chr6_2:367378-367397 None:intergenic 40.0%
AGGATCAGGGAACTATACAA+TGG - chr6_2:367459-367478 None:intergenic 40.0%
CGAGAACATATGTTAGAGGT+AGG - chr6_2:368635-368654 None:intergenic 40.0%
TTGCCGAGAACATATGTTAG+AGG - chr6_2:368639-368658 None:intergenic 40.0%
AAAAATACTTAGGCGGCCAA+TGG - chr6_2:368670-368689 None:intergenic 40.0%
GGGTTCTATTGTGAAAGAGA+TGG - chr6_2:368877-368896 None:intergenic 40.0%
TTTCACAATAGAACCCTTGC+AGG + chr6_2:368881-368900 Msa0903250:intron 40.0%
! CTAGATTTGAGATCCTGCAA+GGG - chr6_2:368897-368916 None:intergenic 40.0%
GATGTCTTTCCTTATGCAGT+GGG - chr6_2:369018-369037 None:intergenic 40.0%
AGATGTCTTTCCTTATGCAG+TGG - chr6_2:369019-369038 None:intergenic 40.0%
!! TAGAGAATTGGAGCATTGGA+AGG - chr6_2:369480-369499 None:intergenic 40.0%
!! CTGGATTCTTGGATTTTGAC+TGG - chr6_2:369689-369708 None:intergenic 40.0%
! GAAAATAGGATTTGGAGTGC+TGG - chr6_2:369708-369727 None:intergenic 40.0%
TTCGTACGGCTCAATGATAT+AGG + chr6_2:369983-370002 Msa0903250:intron 40.0%
CAGTCAACTCATGTCATGTA+TGG + chr6_2:370369-370388 Msa0903250:intron 40.0%
AACGCTATCTAAGTTCAGCT+GGG - chr6_2:370457-370476 None:intergenic 40.0%
AAACGCTATCTAAGTTCAGC+TGG - chr6_2:370458-370477 None:intergenic 40.0%
!!! CGTTTGCCCAAGGTTTTTTA+CGG + chr6_2:370473-370492 Msa0903250:intron 40.0%
GGTATCTTAATCTCCCACAA+CGG + chr6_2:371901-371920 Msa0903250:intron 40.0%
! TTCCAACGTGAGTTGAAAAG+AGG + chr6_2:372420-372439 Msa0903250:intron 40.0%
GATACCTTAATCTCCCACAA+CGG + chr6_2:372631-372650 Msa0903250:intron 40.0%
GCACCCATATAATAGTGAGA+TGG + chr6_2:372792-372811 Msa0903250:intron 40.0%
ATTACAAAAATGCCCCTCCT+AGG + chr6_2:372842-372861 Msa0903250:intron 40.0%
TTACAAAAATGCCCCTCCTA+GGG + chr6_2:372843-372862 Msa0903250:intron 40.0%
GGGCAAAATGGGAAATTCAT+AGG + chr6_2:372864-372883 Msa0903250:intron 40.0%
! ATAAGAGGTGTATGGAAGAG+TGG - chr6_2:372960-372979 None:intergenic 40.0%
TCTTCCATACACCTCTTATG+TGG + chr6_2:372961-372980 Msa0903250:intron 40.0%
ATACACCTCTTATGTGGCAT+GGG + chr6_2:372967-372986 Msa0903250:intron 40.0%
AAATACCCATGCCACATAAG+AGG - chr6_2:372975-372994 None:intergenic 40.0%
GGGAGTGATGATACATAAAC+AGG - chr6_2:373029-373048 None:intergenic 40.0%
TTGGGATGAAGAGTCAATGA+GGG - chr6_2:373080-373099 None:intergenic 40.0%
AAAGAGAGGAAACCGTGAAA+TGG - chr6_2:373197-373216 None:intergenic 40.0%
GAAACAAAGCTGAGAAAGAG+AGG - chr6_2:373211-373230 None:intergenic 40.0%
GGAATAAAGCTGAGAAAGAG+AGG - chr6_2:373262-373281 None:intergenic 40.0%
!! CCGAGGTACTTTTGATAGAA+TGG + chr6_2:373583-373602 Msa0903250:intron 40.0%
CTAAAAGGTCCAATAGGTCA+TGG - chr6_2:373657-373676 None:intergenic 40.0%
! CATGACCTATTGGACCTTTT+AGG + chr6_2:373655-373674 Msa0903250:intron 40.0%
ACACTCCTAAAAGGTCCAAT+AGG - chr6_2:373663-373682 None:intergenic 40.0%
TCACATATAAGAGTTGCAGG+TGG + chr6_2:373886-373905 Msa0903250:intron 40.0%
ATGCCAGGTCTTTCATGATA+AGG - chr6_2:373927-373946 None:intergenic 40.0%
! TCATGAAAGACCTGGCATTT+TGG + chr6_2:373929-373948 Msa0903250:intron 40.0%
ATGATTCCTTCCAAAATGCC+AGG - chr6_2:373942-373961 None:intergenic 40.0%
TTGGTTGAGAGTAAGAGTGA+TGG + chr6_2:374285-374304 Msa0903250:intron 40.0%
TTTCAACATTTAGCCCGAAC+TGG + chr6_2:374395-374414 Msa0903250:intron 40.0%
CACGCAACAAATACAAACCT+CGG - chr6_2:374525-374544 None:intergenic 40.0%
ACATAGTTTGATGCTTTGCC+TGG - chr6_2:374684-374703 None:intergenic 40.0%
TTACCTATAGAAGGCTGACA+CGG - chr6_2:374717-374736 None:intergenic 40.0%
GTCAGCCTTCTATAGGTAAA+AGG + chr6_2:374718-374737 Msa0903250:exon 40.0%
CAGACATACCAACCATATGT+TGG - chr6_2:374856-374875 None:intergenic 40.0%
TGGTCAAACAAGTGAAGTCA+GGG + chr6_2:375000-375019 Msa0903250:three_prime_UTR 40.0%
! ACTTACTTGCTAGGAGTTTG+TGG + chr6_2:375102-375121 Msa0903250:three_prime_UTR 40.0%
!!! GTTTGGTGTTGTCTTTTGTG+TGG + chr6_2:375147-375166 Msa0903250:three_prime_UTR 40.0%
TACGTCATCTTCCCAGTATA+TGG - chr6_2:375275-375294 None:intergenic 40.0%
!! GGATTTTGAAGAAGTAGACG+AGG + chr6_2:375321-375340 Msa0903250:three_prime_UTR 40.0%
! GCTTATGCCATTTACGTCTC+TGG + chr6_2:367127-367146 Msa0903250:intron 45.0%
GGATCCATATTCTTCTTGCG+GGG + chr6_2:367203-367222 Msa0903250:intron 45.0%
GATCCATATTCTTCTTGCGG+GGG + chr6_2:367204-367223 Msa0903250:CDS 45.0%
! TTCTTGCGGGGGAACTTTTA+TGG + chr6_2:367215-367234 Msa0903250:CDS 45.0%
TTCACAAACGGTTGTACTCG+AGG + chr6_2:367379-367398 Msa0903250:intron 45.0%
AAAACAGAGACCGTAAGTGG+TGG - chr6_2:367700-367719 None:intergenic 45.0%
CTCGGCAAAAGTTGAACCAT+TGG + chr6_2:368651-368670 Msa0903250:intron 45.0%
AACCTTGCTGCATATGCAGT+TGG + chr6_2:368845-368864 Msa0903250:intron 45.0%
! GCTAGATTTGAGATCCTGCA+AGG - chr6_2:368898-368917 None:intergenic 45.0%
GGTTTCTTTCCAGTCCCAAT+TGG + chr6_2:369134-369153 Msa0903250:intron 45.0%
AAAACAACGCCAATTGGGAC+TGG - chr6_2:369146-369165 None:intergenic 45.0%
!! GATTTGGAGTGCTGGATTCT+TGG - chr6_2:369700-369719 None:intergenic 45.0%
ACTTAGATAGCGTTTGCCCA+AGG + chr6_2:370463-370482 Msa0903250:intron 45.0%
TGTGTGTGTGTGTATTTGCG+AGG + chr6_2:371414-371433 Msa0903250:intron 45.0%
! CACCTCTTTTCAACTCACGT+TGG - chr6_2:372425-372444 None:intergenic 45.0%
ATTGCCGTTGTGGGAGATTA+AGG - chr6_2:372638-372657 None:intergenic 45.0%
TGCTTCTTCATTGCCGTTGT+GGG - chr6_2:372647-372666 None:intergenic 45.0%
TTGCTTCTTCATTGCCGTTG+TGG - chr6_2:372648-372667 None:intergenic 45.0%
TACAAAAATGCCCCTCCTAG+GGG + chr6_2:372844-372863 Msa0903250:intron 45.0%
! GAATTTCCCATTTTGCCCCT+AGG - chr6_2:372862-372881 None:intergenic 45.0%
TGGAAGAGTGGTATGGAGAA+GGG - chr6_2:372948-372967 None:intergenic 45.0%
ATGGAAGAGTGGTATGGAGA+AGG - chr6_2:372949-372968 None:intergenic 45.0%
AGGTGTATGGAAGAGTGGTA+TGG - chr6_2:372955-372974 None:intergenic 45.0%
! CATGCCACATAAGAGGTGTA+TGG - chr6_2:372968-372987 None:intergenic 45.0%
CATACACCTCTTATGTGGCA+TGG + chr6_2:372966-372985 Msa0903250:intron 45.0%
AATGAGGGAGAAAGAGAGAG+AGG - chr6_2:373065-373084 None:intergenic 45.0%
GTTGGGATGAAGAGTCAATG+AGG - chr6_2:373081-373100 None:intergenic 45.0%
GAGAGAGTGAGATGGAAGTT+GGG - chr6_2:373098-373117 None:intergenic 45.0%
AGTAGATCGAGAGAGTGAGA+TGG - chr6_2:373106-373125 None:intergenic 45.0%
AGATGAGAAGGAGTTAGCGA+TGG - chr6_2:373150-373169 None:intergenic 45.0%
CGATGATGTCAGAGATGAGA+AGG - chr6_2:373162-373181 None:intergenic 45.0%
! TTCCCTTCTCTGCCATTTCA+CGG + chr6_2:373182-373201 Msa0903250:intron 45.0%
AACCGTGAAATGGCAGAGAA+GGG - chr6_2:373187-373206 None:intergenic 45.0%
AAACCGTGAAATGGCAGAGA+AGG - chr6_2:373188-373207 None:intergenic 45.0%
GTTTCACGGTTTGACATCTC+AGG + chr6_2:373226-373245 Msa0903250:intron 45.0%
AAGTACCTCGGCTCAAACTT+TGG - chr6_2:373574-373593 None:intergenic 45.0%
GAGCCCCAATAAGTTGTTCA+TGG + chr6_2:373728-373747 Msa0903250:intron 45.0%
! GAAAGACCTGGCATTTTGGA+AGG + chr6_2:373933-373952 Msa0903250:intron 45.0%
TCTTGAGGTTTCTTTGGTGG+AGG + chr6_2:374065-374084 Msa0903250:intron 45.0%
TATAGGTGAAGGACTGCCAT+TGG + chr6_2:374347-374366 Msa0903250:intron 45.0%
!! CATTTAGCCCGAACTGGTTT+TGG + chr6_2:374401-374420 Msa0903250:intron 45.0%
AAATACAAACCTCGGCGCTA+AGG - chr6_2:374517-374536 None:intergenic 45.0%
CATGCAAGTAGCTCACAACA+GGG - chr6_2:374603-374622 None:intergenic 45.0%
ACATGCAAGTAGCTCACAAC+AGG - chr6_2:374604-374623 None:intergenic 45.0%
ATATGGGTGTGATTCCAACC+AGG + chr6_2:374663-374682 Msa0903250:CDS 45.0%
AGTTTGATGCTTTGCCTGGT+TGG - chr6_2:374680-374699 None:intergenic 45.0%
TAACCGTGTCAGCCTTCTAT+AGG + chr6_2:374711-374730 Msa0903250:CDS 45.0%
TGGTATGTCTGAGTGCTAAG+AGG + chr6_2:374865-374884 Msa0903250:three_prime_UTR 45.0%
AATAGTCCTGGGGTTCCAAA+TGG + chr6_2:374905-374924 Msa0903250:three_prime_UTR 45.0%
ATAGTCCTGGGGTTCCAAAT+GGG + chr6_2:374906-374925 Msa0903250:three_prime_UTR 45.0%
GTGGTCAAACAAGTGAAGTC+AGG + chr6_2:374999-375018 Msa0903250:three_prime_UTR 45.0%
!!! TATGTAAATATAATTTTTTT+AGG + chr6_2:371217-371236 Msa0903250:intron 5.0%
!! AAAAATGTAATAAAATTAAA+TGG + chr6_2:371569-371588 Msa0903250:intron 5.0%
!! AAAATGTAATAAAATTAAAT+GGG + chr6_2:371570-371589 Msa0903250:intron 5.0%
!! ATAGTTAAAAATAAAAAAAT+TGG + chr6_2:371963-371982 Msa0903250:intron 5.0%
!! ATATTAAAAAATAAAAGAAA+AGG + chr6_2:372396-372415 Msa0903250:intron 5.0%
!! GCGGAGAAGAGTATCGAACA+CGG - chr6_2:366650-366669 None:intergenic 50.0%
GCGCCTCTATTTGACGACAT+TGG + chr6_2:366924-366943 Msa0903250:intron 50.0%
GTCTCTGGCAAGTTTGCAAC+AGG + chr6_2:367142-367161 Msa0903250:intron 50.0%
GTTCCCCCGCAAGAAGAATA+TGG - chr6_2:367210-367229 None:intergenic 50.0%
TTACAAACCCGTGCTTCGCA+CGG + chr6_2:368005-368024 Msa0903250:intron 50.0%
TATTGAACCCGTGCGAAGCA+CGG - chr6_2:368016-368035 None:intergenic 50.0%
TGCTTCTACACTGCCGTTGT+GGG - chr6_2:371917-371936 None:intergenic 50.0%
TTGCTTCTACACTGCCGTTG+TGG - chr6_2:371918-371937 None:intergenic 50.0%
! TTCCCATTTTGCCCCTAGGA+GGG - chr6_2:372858-372877 None:intergenic 50.0%
! TTTCCCATTTTGCCCCTAGG+AGG - chr6_2:372859-372878 None:intergenic 50.0%
AGAGAGAGAGGAGATCTCGT+GGG - chr6_2:373053-373072 None:intergenic 50.0%
AAGAGAGAGAGGAGATCTCG+TGG - chr6_2:373054-373073 None:intergenic 50.0%
CGAGAGAGTGAGATGGAAGT+TGG - chr6_2:373099-373118 None:intergenic 50.0%
GGAGACAACAGAGGCTTCAA+TGG - chr6_2:373129-373148 None:intergenic 50.0%
GTTAGCGATGGAGACAACAG+AGG - chr6_2:373138-373157 None:intergenic 50.0%
CAACTCCAAAGTTTGAGCCG+AGG + chr6_2:373566-373585 Msa0903250:CDS 50.0%
CACCAACTCTCTCTTCTCGA+GGG + chr6_2:374553-374572 Msa0903250:intron 50.0%
ACCAACTCTCTCTTCTCGAG+GGG + chr6_2:374554-374573 Msa0903250:intron 50.0%
TGTCTGAGTGCTAAGAGGCT+TGG + chr6_2:374870-374889 Msa0903250:three_prime_UTR 50.0%
! TCAAACCCATTTGGAACCCC+AGG - chr6_2:374914-374933 None:intergenic 50.0%
AAACAAGTGAAGTCAGGGCC+AGG + chr6_2:375005-375024 Msa0903250:three_prime_UTR 50.0%
TACAAACCCGTGCTTCGCAC+GGG + chr6_2:368006-368025 Msa0903250:intron 55.0%
ATTGAACCCGTGCGAAGCAC+GGG - chr6_2:368015-368034 None:intergenic 55.0%
GGCCAACTGCATATGCAGCA+AGG - chr6_2:368850-368869 None:intergenic 55.0%
! TCCCATTTTGCCCCTAGGAG+GGG - chr6_2:372857-372876 None:intergenic 55.0%
AGAGAGGAGATCTCGTGGGA+GGG - chr6_2:373049-373068 None:intergenic 55.0%
CTCGGCGCTAAGGCAAAACA+GGG - chr6_2:374507-374526 None:intergenic 55.0%
GCACCAACTCTCTCTTCTCG+AGG + chr6_2:374552-374571 Msa0903250:intron 55.0%
ACCCCTCGAGAAGAGAGAGT+TGG - chr6_2:374558-374577 None:intergenic 55.0%
ACTCTCTCTTCTCGAGGGGT+TGG + chr6_2:374558-374577 Msa0903250:intron 55.0%
CTCTCTCTTCTCGAGGGGTT+GGG + chr6_2:374559-374578 Msa0903250:intron 55.0%
GGTGTTCGGGGTTCGAACCT+CGG + chr6_2:370646-370665 Msa0903250:intron 60.0%
TGCCCCTCCTAGGGGCAAAA+TGG + chr6_2:372852-372871 Msa0903250:intron 60.0%
GCCCCTCCTAGGGGCAAAAT+GGG + chr6_2:372853-372872 Msa0903250:intron 60.0%
GAGAGAGGAGATCTCGTGGG+AGG - chr6_2:373050-373069 None:intergenic 60.0%
CCTCGGCGCTAAGGCAAAAC+AGG - chr6_2:374508-374527 None:intergenic 60.0%
! CCTGTTTTGCCTTAGCGCCG+AGG + chr6_2:374505-374524 Msa0903250:intron 60.0%
CGGGGTTCGAACCTCGGACT+TGG + chr6_2:370652-370671 Msa0903250:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 366389 375649 366389 ID=Msa0903250;Name=Msa0903250
chr6_2 mRNA 366389 375649 366389 ID=Msa0903250-mRNA-1;Parent=Msa0903250;Name=Msa0903250-mRNA-1;_AED=0.30;_eAED=0.34;_QI=0|0|0.25|0.5|1|1|4|913|72
chr6_2 exon 366389 366396 366389 ID=Msa0903250-mRNA-1:exon:195;Parent=Msa0903250-mRNA-1
chr6_2 exon 367204 367284 367204 ID=Msa0903250-mRNA-1:exon:196;Parent=Msa0903250-mRNA-1
chr6_2 exon 373537 373587 373537 ID=Msa0903250-mRNA-1:exon:197;Parent=Msa0903250-mRNA-1
chr6_2 exon 374658 375649 374658 ID=Msa0903250-mRNA-1:exon:198;Parent=Msa0903250-mRNA-1
chr6_2 CDS 366389 366396 366389 ID=Msa0903250-mRNA-1:cds;Parent=Msa0903250-mRNA-1
chr6_2 CDS 367204 367284 367204 ID=Msa0903250-mRNA-1:cds;Parent=Msa0903250-mRNA-1
chr6_2 CDS 373537 373587 373537 ID=Msa0903250-mRNA-1:cds;Parent=Msa0903250-mRNA-1
chr6_2 CDS 374658 374736 374658 ID=Msa0903250-mRNA-1:cds;Parent=Msa0903250-mRNA-1
chr6_2 three_prime_UTR 374737 375649 374737 ID=Msa0903250-mRNA-1:three_prime_utr;Parent=Msa0903250-mRNA-1
Gene Sequence

>Msa0903250

ATGGTTGTGATCCATATTCTTCTTGCGGGGGAACTTTTATGGCAAATTCCTCATCAGAAACTATATCATCATTGGAATAAAGGCTCTATGTGTGTTGGAGATGTTAATGTTTATGTCACAACTCCAAAGTTTGAGCCGAGTTACAATATGGGTGTGATTCCAACCAGGCAAAGCATCAAACTATGTGAGCGCTTAACCGTGTCAGCCTTCTATAGGTAA
Protein sequence

>Msa0903250

MVVIHILLAGELLWQIPHQKLYHHWNKGSMCVGDVNVYVTTPKFEPSYNMGVIPTRQSIKLCERLTVSAFYR*