AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0730430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730430 MtrunA17_Chr5g0423771 97.906 191 4 0 1 191 1 191 2.10e-137 381
Msa0730430 MtrunA17_Chr4g0047771 46.386 166 88 1 6 171 2 166 9.25e-51 162
Msa0730430 MtrunA17_Chr2g0318011 46.707 167 89 0 6 172 2 168 9.63e-47 151
Msa0730430 MtrunA17_Chr1g0209281 40.761 184 106 1 7 190 4 184 2.56e-44 145
Msa0730430 MtrunA17_Chr1g0209321 27.119 177 119 5 12 185 9 178 4.30e-14 67.4
Msa0730430 MtrunA17_Chr1g0209311 38.144 97 58 1 7 103 4 98 1.04e-12 61.6
Msa0730430 MtrunA17_Chr1g0209301 32.941 85 57 0 106 190 18 102 4.85e-12 60.1
Msa0730430 MtrunA17_Chr1g0209291 34.694 98 55 2 6 103 10 98 7.97e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0730430 AT1G13380.1 71.728 191 51 1 1 191 1 188 4.40e-89 259
Msa0730430 AT4G27435.1 47.059 170 90 0 6 175 2 171 3.39e-53 168
Msa0730430 AT3G15480.1 44.848 165 90 1 6 169 2 166 3.79e-49 157
Msa0730430 AT1G61065.1 46.061 165 87 2 20 183 16 179 1.85e-47 153
Msa0730430 AT1G52910.1 43.636 165 92 1 6 169 2 166 2.67e-44 145
Msa0730430 AT1G68220.1 39.560 182 106 3 10 188 5 185 8.54e-39 132
Msa0730430 AT5G17210.1 28.916 166 115 2 3 167 2 165 7.44e-12 62.0

Find 56 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCCTATTTCTTCTTTC+AGG 0.118110 5_1:+39579759 Msa0730430:CDS
CGCCTAAATTTCGATATTAA+TGG 0.129871 5_1:-39581011 None:intergenic
ATAAATAATTCCCCGGTATT+TGG 0.197206 5_1:-39580638 None:intergenic
TTCAGGTGAATCACTGCTTA+TGG 0.206084 5_1:+39579776 Msa0730430:CDS
TTCCATTAATATCGAAATTT+AGG 0.232176 5_1:+39581009 Msa0730430:three_prime_UTR
TCAGATGTTGCAACTGGTTA+TGG 0.298329 5_1:+39579729 Msa0730430:CDS
AACTAGTGTTTATAATGTTC+TGG 0.315559 5_1:+39580959 Msa0730430:three_prime_UTR
TTTGGGAGGCCTTTAACCCC+TGG 0.341537 5_1:+39579819 Msa0730430:CDS
TCAGGTGAATCACTGCTTAT+GGG 0.342216 5_1:+39579777 Msa0730430:CDS
ATTCACCTGAAAGAAGAAAT+AGG 0.343625 5_1:-39579764 None:intergenic
GTTTGTTGCTTAGTTGCATT+TGG 0.366885 5_1:+39576337 Msa0730430:CDS
AGGAAAGGCATCTTCATTAC+CGG 0.367227 5_1:+39580688 Msa0730430:CDS
ACTTCTCCTGTGAAAGTTTG+AGG 0.369772 5_1:+39580668 Msa0730430:CDS
CAATATGTTTCATTTGTTCC+TGG 0.388667 5_1:-39579696 None:intergenic
AGAAGAAAGAAAATATATAA+TGG 0.392892 5_1:-39579859 None:intergenic
TTGGGAGGCCTTTAACCCCT+GGG 0.398501 5_1:+39579820 Msa0730430:CDS
CACTTTCTCAGAAGACCAAT+CGG 0.400256 5_1:+39580785 Msa0730430:CDS
TCCCCGGTATTTGGTGTGAT+AGG 0.408796 5_1:-39580629 None:intergenic
GTGACAAAGTGCATGTGCTT+TGG 0.415268 5_1:+39579801 Msa0730430:CDS
CGAAGGGGATATATGTAATC+AGG 0.416105 5_1:+39581032 Msa0730430:three_prime_UTR
GCCTTTCCTCAAACTTTCAC+AGG 0.425540 5_1:-39580674 None:intergenic
TACAGTTCAGATGTTGCAAC+TGG 0.428312 5_1:+39579723 Msa0730430:CDS
TCTGTGAAGCTACTACTTCT+TGG 0.429060 5_1:-39576247 None:intergenic
TGACAAAGTGCATGTGCTTT+GGG 0.430960 5_1:+39579802 Msa0730430:CDS
TGTTCCTGGAGTTGTGTGAA+TGG 0.437125 5_1:-39579682 None:intergenic
CAAGGTCAATCATGCATGTC+CGG 0.491279 5_1:-39580830 None:intergenic
ATGCCTATCACACCAAATAC+CGG 0.505251 5_1:+39580626 Msa0730430:CDS
AGTAGAGTGAGAAGCTGAAA+CGG 0.511571 5_1:-39576214 None:intergenic
CGATTGGTCTTCTGAGAAAG+TGG 0.515883 5_1:-39580784 None:intergenic
TAATATCGAAATTTAGGCGA+AGG 0.528725 5_1:+39581015 Msa0730430:three_prime_UTR
CACAGACCCATTTCACAAAG+TGG 0.534476 5_1:+39576264 Msa0730430:five_prime_UTR
TACTCTTTCATATTCATCCA+AGG 0.535313 5_1:-39580848 None:intergenic
GCAGAATCATGCTTAATAGC+TGG 0.536563 5_1:+39580592 Msa0730430:CDS
AATCGGGTTAGTTCCACGAT+TGG 0.543860 5_1:+39580802 Msa0730430:CDS
CGGACATGCATGATTGACCT+TGG 0.545157 5_1:+39580831 Msa0730430:exon
AATATCGAAATTTAGGCGAA+GGG 0.551608 5_1:+39581016 Msa0730430:three_prime_UTR
TGCCTATCACACCAAATACC+GGG 0.552373 5_1:+39580627 Msa0730430:CDS
TCCTGTGAAAGTTTGAGGAA+AGG 0.553407 5_1:+39580673 Msa0730430:CDS
TAGTGTTTATAATGTTCTGG+TGG 0.553637 5_1:+39580962 Msa0730430:three_prime_UTR
ACTTTCTCAGAAGACCAATC+GGG 0.557107 5_1:+39580786 Msa0730430:CDS
GGAACCATTCACACAACTCC+AGG 0.583570 5_1:+39579678 Msa0730430:CDS
AGTTCCACGATTGGAATGAC+CGG 0.588851 5_1:+39580811 Msa0730430:CDS
TACGACGATGAAAATTGCTC+CGG 0.589495 5_1:-39580707 None:intergenic
TGGGAGGCCTTTAACCCCTG+GGG 0.589713 5_1:+39579821 Msa0730430:CDS
AATCGTGGAACTAACCCGAT+TGG 0.605332 5_1:-39580800 None:intergenic
TCTGAGCATAAATAATTCCC+CGG 0.610710 5_1:-39580645 None:intergenic
GTTGCAACTGGTTATGGAGT+GGG 0.613168 5_1:+39579735 Msa0730430:CDS
TTTACTACTTGGTAAAACAG+TGG 0.633637 5_1:+39580912 Msa0730430:three_prime_UTR
ATATCGAAATTTAGGCGAAG+GGG 0.640496 5_1:+39581017 Msa0730430:three_prime_UTR
GGGAGGCCTTTAACCCCTGG+GGG 0.642259 5_1:+39579822 Msa0730430:CDS
CTTCTGAGAAAGTGGAGTAG+TGG 0.649249 5_1:-39580776 None:intergenic
ATGTCCGGTCATTCCAATCG+TGG 0.657041 5_1:-39580815 None:intergenic
CTACTACATGTACTTCACAA+AGG 0.667346 5_1:+39580750 Msa0730430:CDS
GCCTATCACACCAAATACCG+GGG 0.675980 5_1:+39580628 Msa0730430:CDS
TGTTGCAACTGGTTATGGAG+TGG 0.682410 5_1:+39579734 Msa0730430:CDS
CAAAGTGCATGTGCTTTGGG+AGG 0.685983 5_1:+39579805 Msa0730430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTGATATATTTGT+AGG + chr5_1:39576982-39577001 Msa0730430:intron 10.0%
!! AATAATAAAAAAAAAAAACG+AGG + chr5_1:39577203-39577222 Msa0730430:intron 10.0%
!! ATAATAAAAAAAAAAAACGA+GGG + chr5_1:39577204-39577223 Msa0730430:intron 10.0%
!!! TTTTTTGAATAAGCTAAATT+AGG + chr5_1:39576711-39576730 Msa0730430:intron 15.0%
!! ATAAAATAGATTCAGAATAA+AGG + chr5_1:39577311-39577330 Msa0730430:intron 15.0%
!! TAAAATAGATTCAGAATAAA+GGG + chr5_1:39577312-39577331 Msa0730430:intron 15.0%
!! TTGTTAAACAAAAAAATAAC+AGG - chr5_1:39578340-39578359 None:intergenic 15.0%
!! AAACAAAAACAACAAAAATA+AGG - chr5_1:39578517-39578536 None:intergenic 15.0%
!!! TTTTTGTTTTTATGAAATAG+CGG + chr5_1:39578528-39578547 Msa0730430:intron 15.0%
!! TCAATATCAAATATAATTTC+TGG - chr5_1:39578958-39578977 None:intergenic 15.0%
!!! CTTCATATTTTACATTAATT+TGG + chr5_1:39579628-39579647 Msa0730430:intron 15.0%
!! AGAAGAAAGAAAATATATAA+TGG - chr5_1:39579862-39579881 None:intergenic 15.0%
!!! TTATATATTTTCTTTCTTCT+TGG + chr5_1:39579862-39579881 Msa0730430:CDS 15.0%
!!! ATTATTGGAAATTTCATTTT+TGG + chr5_1:39580009-39580028 Msa0730430:intron 15.0%
!!! GTTTTAAACCCATATTATTA+TGG + chr5_1:39576629-39576648 Msa0730430:intron 20.0%
!! CTTAATGTCCATAATAATAT+GGG - chr5_1:39576640-39576659 None:intergenic 20.0%
!! TCTTAATGTCCATAATAATA+TGG - chr5_1:39576641-39576660 None:intergenic 20.0%
!!! TGTGATTGAAGTTTTAAAAA+TGG + chr5_1:39577008-39577027 Msa0730430:intron 20.0%
!!! GTGATTGAAGTTTTAAAAAT+GGG + chr5_1:39577009-39577028 Msa0730430:intron 20.0%
!!! TGATTGAAGTTTTAAAAATG+GGG + chr5_1:39577010-39577029 Msa0730430:intron 20.0%
!! ATTTGCTCAATAAATTATTG+AGG + chr5_1:39577232-39577251 Msa0730430:intron 20.0%
!! TAACTGAAAATACAATATGA+AGG + chr5_1:39577477-39577496 Msa0730430:intron 20.0%
!! AACTGAAAATACAATATGAA+GGG + chr5_1:39577478-39577497 Msa0730430:intron 20.0%
!!! AAGGTTATTTCAAAGAAAAA+AGG - chr5_1:39577933-39577952 None:intergenic 20.0%
!!! AACCTTCATTTATCTTTTTT+TGG + chr5_1:39577947-39577966 Msa0730430:intron 20.0%
!! AACCAAAAAAAGATAAATGA+AGG - chr5_1:39577952-39577971 None:intergenic 20.0%
!! TTTCTCTTAAAATGAAATAG+CGG - chr5_1:39578183-39578202 None:intergenic 20.0%
!! TTGGTTTAAAAAAGAAACAA+GGG + chr5_1:39578217-39578236 Msa0730430:intron 20.0%
!!! TCTTTTTGTGAAAATAAATC+AGG + chr5_1:39578801-39578820 Msa0730430:intron 20.0%
!!! CTTTTTGTGAAAATAAATCA+GGG + chr5_1:39578802-39578821 Msa0730430:intron 20.0%
!! AGAAAACATGCATAATAAAA+AGG - chr5_1:39579284-39579303 None:intergenic 20.0%
!! ATGTAAAAGAATTTGTAGAA+GGG - chr5_1:39579313-39579332 None:intergenic 20.0%
!!! TTTCCAATAATTTTTTTCAC+TGG - chr5_1:39580000-39580019 None:intergenic 20.0%
!!! TCATCTTTTCTTGATTTATT+TGG + chr5_1:39580034-39580053 Msa0730430:intron 20.0%
!! ACTAACAAAGAACATATTTA+TGG + chr5_1:39580224-39580243 Msa0730430:intron 20.0%
!! AAAACAAAAAACACATATAG+TGG - chr5_1:39580414-39580433 None:intergenic 20.0%
!!! TTTTTTTTTTCCTTTTTTCC+AGG + chr5_1:39580554-39580573 Msa0730430:intron 20.0%
!!! TTTTTTTTTCCTTTTTTCCA+GGG + chr5_1:39580555-39580574 Msa0730430:intron 20.0%
!! TTCCATTAATATCGAAATTT+AGG + chr5_1:39581009-39581028 Msa0730430:three_prime_UTR 20.0%
!! TTTTTACCACTTTGTGAAAT+GGG - chr5_1:39576273-39576292 None:intergenic 25.0%
!! ATTTTTACCACTTTGTGAAA+TGG - chr5_1:39576274-39576293 None:intergenic 25.0%
! ATTTCACAAAGTGGTAAAAA+TGG + chr5_1:39576273-39576292 Msa0730430:exon 25.0%
!!! GATCTCTTTAAAATGAACAA+TGG - chr5_1:39576452-39576471 None:intergenic 25.0%
!!! TAGTTATTTTACACTAATCG+AGG + chr5_1:39576676-39576695 Msa0730430:intron 25.0%
!!! AGTTATTTTACACTAATCGA+GGG + chr5_1:39576677-39576696 Msa0730430:intron 25.0%
! AATAACAATGAACACATCAA+TGG - chr5_1:39576852-39576871 None:intergenic 25.0%
! TTATTATAGATGCAAGATGA+AGG + chr5_1:39576867-39576886 Msa0730430:intron 25.0%
!!! GATTGAAGTTTTAAAAATGG+GGG + chr5_1:39577011-39577030 Msa0730430:intron 25.0%
!! GACTTTTAAATGGAATATGA+TGG + chr5_1:39577040-39577059 Msa0730430:intron 25.0%
! TTAAATGGAATATGATGGTT+TGG + chr5_1:39577045-39577064 Msa0730430:intron 25.0%
! AATGCAAAAGATAGACTTAA+TGG + chr5_1:39577169-39577188 Msa0730430:intron 25.0%
! AACCAAATAACAAATATGAG+AGG + chr5_1:39577286-39577305 Msa0730430:intron 25.0%
! ACCAAATAACAAATATGAGA+GGG + chr5_1:39577287-39577306 Msa0730430:intron 25.0%
! ATTTCAAGAACATGGTAAAT+TGG - chr5_1:39577651-39577670 None:intergenic 25.0%
! AATTTACCATGTTCTTGAAA+TGG + chr5_1:39577650-39577669 Msa0730430:intron 25.0%
! TATTTAAGCACTAGAAAGAA+GGG + chr5_1:39578003-39578022 Msa0730430:intron 25.0%
! AGAAAATACAAAATTGTCCT+TGG + chr5_1:39578198-39578217 Msa0730430:intron 25.0%
!!! CTTGTTTCTTTTTTAAACCA+AGG - chr5_1:39578218-39578237 None:intergenic 25.0%
! CTTGGTTTAAAAAAGAAACA+AGG + chr5_1:39578216-39578235 Msa0730430:intron 25.0%
! AACTAGAACAAAAAAGTAAC+AGG - chr5_1:39578380-39578399 None:intergenic 25.0%
!! GTTTTATATGAACAAAACAG+AGG - chr5_1:39578473-39578492 None:intergenic 25.0%
! TGAAAATAAATCAGGGAATA+AGG + chr5_1:39578809-39578828 Msa0730430:intron 25.0%
!! AAGGGATATTTCATATTTTC+TGG + chr5_1:39578906-39578925 Msa0730430:intron 25.0%
!! TTATAGTTCTATAAAGAGCA+TGG - chr5_1:39579077-39579096 None:intergenic 25.0%
! AAGTTATGAAAAACAATGGA+GGG - chr5_1:39579170-39579189 None:intergenic 25.0%
! AGTGAAGTTATGAAAAACAA+TGG - chr5_1:39579174-39579193 None:intergenic 25.0%
! ATGCATAATAAAAAGGATGA+TGG - chr5_1:39579277-39579296 None:intergenic 25.0%
! TGTAAAAGAATTTGTAGAAG+GGG - chr5_1:39579312-39579331 None:intergenic 25.0%
! CATGTAAAAGAATTTGTAGA+AGG - chr5_1:39579314-39579333 None:intergenic 25.0%
!! CTACAAATTCTTTTACATGA+AGG + chr5_1:39579315-39579334 Msa0730430:intron 25.0%
!! CTGTCAATTTTATCTTCATA+GGG + chr5_1:39579425-39579444 Msa0730430:intron 25.0%
!!! TTGTTTAAGGTATTTTGTGA+GGG + chr5_1:39579497-39579516 Msa0730430:intron 25.0%
! TGTATGCTTTAATGTTTCAT+AGG + chr5_1:39579586-39579605 Msa0730430:intron 25.0%
! TGTCCAGTGAAAAAAATTAT+TGG + chr5_1:39579994-39580013 Msa0730430:intron 25.0%
! TCTTGATTTATTTGGTTGAT+TGG + chr5_1:39580042-39580061 Msa0730430:intron 25.0%
!!! TTTTTGTTTTGCTACATTGA+AGG - chr5_1:39580096-39580115 None:intergenic 25.0%
! TTTGGTTAGAATAACCAAAT+AGG + chr5_1:39580373-39580392 Msa0730430:intron 25.0%
! ATGAAACAATGATTCCTATT+TGG - chr5_1:39580390-39580409 None:intergenic 25.0%
! CAAATTTATTGTGATCTATG+AGG + chr5_1:39580483-39580502 Msa0730430:intron 25.0%
!!! AGTAACAAATTTTGAGTCTT+CGG + chr5_1:39580867-39580886 Msa0730430:three_prime_UTR 25.0%
! AACTAGTGTTTATAATGTTC+TGG + chr5_1:39580959-39580978 Msa0730430:three_prime_UTR 25.0%
!! AAAGTGTGTAGAATATTTTG+AGG + chr5_1:39581075-39581094 Msa0730430:three_prime_UTR 25.0%
! TTTTTGTGTCTGTTTAAGTC+TGG + chr5_1:39576480-39576499 Msa0730430:intron 30.0%
! TTTTGTGTCTGTTTAAGTCT+GGG + chr5_1:39576481-39576500 Msa0730430:intron 30.0%
ATTGCATAGGATGGTTTATT+TGG + chr5_1:39576514-39576533 Msa0730430:intron 30.0%
TGTTCATGATGATTATGAGA+AGG + chr5_1:39576600-39576619 Msa0730430:intron 30.0%
!! GTTATTTTACACTAATCGAG+GGG + chr5_1:39576678-39576697 Msa0730430:intron 30.0%
AGGTAAATTACTTGAGATGA+TGG + chr5_1:39576887-39576906 Msa0730430:intron 30.0%
GGTAAATTACTTGAGATGAT+GGG + chr5_1:39576888-39576907 Msa0730430:intron 30.0%
!!! CTTTTGACTTTTGTCATTTG+TGG - chr5_1:39576949-39576968 None:intergenic 30.0%
TTTGGCTACTTAAATTTGTG+TGG + chr5_1:39577063-39577082 Msa0730430:intron 30.0%
AATTTGTGTGGAAGAAGATT+TGG + chr5_1:39577075-39577094 Msa0730430:intron 30.0%
ACTGAGAATTTCTTGTTCAT+TGG + chr5_1:39577392-39577411 Msa0730430:intron 30.0%
CACAAGTTATGTAGTGAAAT+AGG + chr5_1:39577550-39577569 Msa0730430:intron 30.0%
AGTAGAAAAGACAGTACAAT+AGG - chr5_1:39577581-39577600 None:intergenic 30.0%
!!! TGAAGTCTCTTGTTTTCTTT+TGG + chr5_1:39577776-39577795 Msa0730430:intron 30.0%
!!! TGTTTTCTTTTGGTGTTACA+TGG + chr5_1:39577786-39577805 Msa0730430:intron 30.0%
! TGCTAGAATACATTTTGCAT+TGG + chr5_1:39577855-39577874 Msa0730430:intron 30.0%
! CTTCTTTCTAGTGCTTAAAT+AGG - chr5_1:39578004-39578023 None:intergenic 30.0%
CTATTTAAGCACTAGAAAGA+AGG + chr5_1:39578002-39578021 Msa0730430:intron 30.0%
TTCACATATGCATTCAGTAA+GGG + chr5_1:39578888-39578907 Msa0730430:intron 30.0%
! GGATATTTCATATTTTCTGG+CGG + chr5_1:39578909-39578928 Msa0730430:intron 30.0%
! ATTTTGCTTCCAGTATCATA+GGG - chr5_1:39579020-39579039 None:intergenic 30.0%
!! CCTATTCCATTTTTGTTTCT+TGG - chr5_1:39579053-39579072 None:intergenic 30.0%
CCAAGAAACAAAAATGGAAT+AGG + chr5_1:39579050-39579069 Msa0730430:intron 30.0%
GAAGTTATGAAAAACAATGG+AGG - chr5_1:39579171-39579190 None:intergenic 30.0%
! ATAAAAAGGATGATGGCATA+GGG - chr5_1:39579270-39579289 None:intergenic 30.0%
! AATAAAAAGGATGATGGCAT+AGG - chr5_1:39579271-39579290 None:intergenic 30.0%
AGGGAAAAAAGAATATGTGA+GGG - chr5_1:39579378-39579397 None:intergenic 30.0%
AAGGGAAAAAAGAATATGTG+AGG - chr5_1:39579379-39579398 None:intergenic 30.0%
CCTATGAAGATAAAATTGAC+AGG - chr5_1:39579427-39579446 None:intergenic 30.0%
! CCTGTCAATTTTATCTTCAT+AGG + chr5_1:39579424-39579443 Msa0730430:intron 30.0%
ATGTCAAAAAGAAACATAGC+AGG + chr5_1:39579453-39579472 Msa0730430:intron 30.0%
!! TAGATTGATCGTGTTGTTTA+AGG + chr5_1:39579484-39579503 Msa0730430:intron 30.0%
!! GTTGTTTAAGGTATTTTGTG+AGG + chr5_1:39579496-39579515 Msa0730430:intron 30.0%
CATGGAGTAAAACTAGAATT+AGG + chr5_1:39579520-39579539 Msa0730430:intron 30.0%
AGTAAAACTAGAATTAGGCA+TGG + chr5_1:39579525-39579544 Msa0730430:intron 30.0%
AGTAAAACTCGAATTAGTCA+TGG + chr5_1:39579548-39579567 Msa0730430:intron 30.0%
CAATATGTTTCATTTGTTCC+TGG - chr5_1:39579699-39579718 None:intergenic 30.0%
ATTCACCTGAAAGAAGAAAT+AGG - chr5_1:39579767-39579786 None:intergenic 30.0%
AGTATAATATCACCGTATCA+GGG - chr5_1:39579935-39579954 None:intergenic 30.0%
AAGTATAATATCACCGTATC+AGG - chr5_1:39579936-39579955 None:intergenic 30.0%
AAATGAGTAAGACACACTTT+GGG - chr5_1:39580124-39580143 None:intergenic 30.0%
ATGTTCTTTGTTAGTCAACT+TGG - chr5_1:39580219-39580238 None:intergenic 30.0%
! TTTTATCCGTTAATTGTGTG+AGG - chr5_1:39580295-39580314 None:intergenic 30.0%
!!! ACTCATTTTGGCTATAGATT+TGG + chr5_1:39580355-39580374 Msa0730430:intron 30.0%
! TCTTCACTAGTGAATCATTT+TGG + chr5_1:39580516-39580535 Msa0730430:intron 30.0%
TACTCTTTCATATTCATCCA+AGG - chr5_1:39580851-39580870 None:intergenic 30.0%
! TCTCTGTGATTTTTACTACT+TGG + chr5_1:39580901-39580920 Msa0730430:three_prime_UTR 30.0%
TTTACTACTTGGTAAAACAG+TGG + chr5_1:39580912-39580931 Msa0730430:three_prime_UTR 30.0%
TAGTGTTTATAATGTTCTGG+TGG + chr5_1:39580962-39580981 Msa0730430:three_prime_UTR 30.0%
CGCCTAAATTTCGATATTAA+TGG - chr5_1:39581014-39581033 None:intergenic 30.0%
TAATATCGAAATTTAGGCGA+AGG + chr5_1:39581015-39581034 Msa0730430:three_prime_UTR 30.0%
AATATCGAAATTTAGGCGAA+GGG + chr5_1:39581016-39581035 Msa0730430:three_prime_UTR 30.0%
AAAGTGGTAAAAATGGCTGA+GGG + chr5_1:39576280-39576299 Msa0730430:exon 35.0%
! GTTTGTTGCTTAGTTGCATT+TGG + chr5_1:39576337-39576356 Msa0730430:CDS 35.0%
TTGGGAAAAATTGCATAGGA+TGG + chr5_1:39576505-39576524 Msa0730430:intron 35.0%
GAACACATCAATGGATGATA+AGG - chr5_1:39576843-39576862 None:intergenic 35.0%
!! GCCCTCTCATATTTGTTATT+TGG - chr5_1:39577291-39577310 None:intergenic 35.0%
TCTTGTTCATTGGAAAAACG+AGG + chr5_1:39577402-39577421 Msa0730430:intron 35.0%
! CTTAGTGCACATAGTGATTT+TGG - chr5_1:39577616-39577635 None:intergenic 35.0%
AAATCACTATGTGCACTAAG+TGG + chr5_1:39577616-39577635 Msa0730430:intron 35.0%
GAAAGAATACCTTCAAGCAA+TGG + chr5_1:39577813-39577832 Msa0730430:intron 35.0%
TATGTTGTACCATTGCTTGA+AGG - chr5_1:39577825-39577844 None:intergenic 35.0%
TTACCTTCTACTGTGTAAAG+AGG + chr5_1:39577977-39577996 Msa0730430:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG + chr5_1:39578567-39578586 Msa0730430:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG - chr5_1:39578608-39578627 None:intergenic 35.0%
CTATCCGCTATTAACTACTA+TGG + chr5_1:39578608-39578627 Msa0730430:intron 35.0%
CCATCCATAGTAGTTAATAG+CGG - chr5_1:39578615-39578634 None:intergenic 35.0%
CTATTAACTACTATGGATGG+AGG + chr5_1:39578615-39578634 Msa0730430:intron 35.0%
GAGTAACAATCATACAACAG+CGG - chr5_1:39578769-39578788 None:intergenic 35.0%
GTTCACATATGCATTCAGTA+AGG + chr5_1:39578887-39578906 Msa0730430:intron 35.0%
GGTCGAATCACATATATGAA+CGG - chr5_1:39578937-39578956 None:intergenic 35.0%
! GATTTTGCTTCCAGTATCAT+AGG - chr5_1:39579021-39579040 None:intergenic 35.0%
AACAAGGCAATGGAGTAAAA+GGG - chr5_1:39579397-39579416 None:intergenic 35.0%
TAACAAGGCAATGGAGTAAA+AGG - chr5_1:39579398-39579417 None:intergenic 35.0%
! TACTCCATTGCCTTGTTAAT+TGG + chr5_1:39579400-39579419 Msa0730430:intron 35.0%
! ACTCCATTGCCTTGTTAATT+GGG + chr5_1:39579401-39579420 Msa0730430:intron 35.0%
! GCTTTCCTATTTCTTCTTTC+AGG + chr5_1:39579759-39579778 Msa0730430:CDS 35.0%
!! GGTTGATTGGTTTAAGTATG+TGG + chr5_1:39580055-39580074 Msa0730430:intron 35.0%
GAAATGAGTAAGACACACTT+TGG - chr5_1:39580125-39580144 None:intergenic 35.0%
AAGTGTGTCTTACTCATTTC+AGG + chr5_1:39580125-39580144 Msa0730430:intron 35.0%
AGTGTGTCTTACTCATTTCA+GGG + chr5_1:39580126-39580145 Msa0730430:intron 35.0%
TACTCATTTCAGGGTTCAAA+CGG + chr5_1:39580135-39580154 Msa0730430:intron 35.0%
ACAATGCCTCACACAATTAA+CGG + chr5_1:39580286-39580305 Msa0730430:intron 35.0%
CTATAGCCAAAATGAGTGAA+GGG - chr5_1:39580352-39580371 None:intergenic 35.0%
TCTATAGCCAAAATGAGTGA+AGG - chr5_1:39580353-39580372 None:intergenic 35.0%
TTTATTCACACGAAGCTTCT+TGG + chr5_1:39580432-39580451 Msa0730430:intron 35.0%
! AATTTTCATCGTCGTAACGA+TGG + chr5_1:39580714-39580733 Msa0730430:CDS 35.0%
CTACTACATGTACTTCACAA+AGG + chr5_1:39580750-39580769 Msa0730430:CDS 35.0%
!!! GTAAAACAGTGGTTTTGACT+TGG + chr5_1:39580923-39580942 Msa0730430:three_prime_UTR 35.0%
ATATCGAAATTTAGGCGAAG+GGG + chr5_1:39581017-39581036 Msa0730430:three_prime_UTR 35.0%
AGTAGAGTGAGAAGCTGAAA+CGG - chr5_1:39576217-39576236 None:intergenic 40.0%
TCTGTGAAGCTACTACTTCT+TGG - chr5_1:39576250-39576269 None:intergenic 40.0%
CAAAGTGGTAAAAATGGCTG+AGG + chr5_1:39576279-39576298 Msa0730430:exon 40.0%
TGTCTGTTTAAGTCTGGGTT+TGG + chr5_1:39576486-39576505 Msa0730430:intron 40.0%
GTCTGTTTAAGTCTGGGTTT+GGG + chr5_1:39576487-39576506 Msa0730430:intron 40.0%
GGGTTTGGGAAAAATTGCAT+AGG + chr5_1:39576501-39576520 Msa0730430:intron 40.0%
!! CTCAATTGTGGTATTGGCTT+GGG - chr5_1:39576777-39576796 None:intergenic 40.0%
CAAGCCAATACCACAATTGA+GGG + chr5_1:39576776-39576795 Msa0730430:intron 40.0%
AAGCCAATACCACAATTGAG+GGG + chr5_1:39576777-39576796 Msa0730430:intron 40.0%
TTTCCCCTCAATTGTGGTAT+TGG - chr5_1:39576783-39576802 None:intergenic 40.0%
TTACAGTTTCCCCTCAATTG+TGG - chr5_1:39576789-39576808 None:intergenic 40.0%
!! GGGGCGATTTGACTTTTAAA+TGG + chr5_1:39577030-39577049 Msa0730430:intron 40.0%
TATTGAGGAAGCCATAGTAG+AGG + chr5_1:39577247-39577266 Msa0730430:intron 40.0%
CACGCTAATTTCCTCTACTA+TGG - chr5_1:39577261-39577280 None:intergenic 40.0%
!! AAAAACGAGGTCTCTGGAAT+AGG + chr5_1:39577415-39577434 Msa0730430:intron 40.0%
!! AAAACGAGGTCTCTGGAATA+GGG + chr5_1:39577416-39577435 Msa0730430:intron 40.0%
!! GAAGGGCAGTTTTTGTTTGA+TGG + chr5_1:39577495-39577514 Msa0730430:intron 40.0%
GCAACACCATTTCAAGAACA+TGG - chr5_1:39577659-39577678 None:intergenic 40.0%
CAAGCAATGGTACAACATAC+CGG + chr5_1:39577826-39577845 Msa0730430:intron 40.0%
AAGCAATGGTACAACATACC+GGG + chr5_1:39577827-39577846 Msa0730430:intron 40.0%
GCAAAATGTATTCTAGCACC+AGG - chr5_1:39577853-39577872 None:intergenic 40.0%
AGAAAGAAGGGTTGAGTAGA+TGG + chr5_1:39578015-39578034 Msa0730430:intron 40.0%
GTAAAACTTCTTCACCTCTG+CGG + chr5_1:39578277-39578296 Msa0730430:intron 40.0%
GAGCAAACACAACAAAGTAG+AGG - chr5_1:39578311-39578330 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG + chr5_1:39578566-39578585 Msa0730430:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG + chr5_1:39578568-39578587 Msa0730430:intron 40.0%
CCGCTATTAACTACTATGGA+TGG + chr5_1:39578612-39578631 Msa0730430:intron 40.0%
GAGGATAGCTCAATAGTTAG+AGG + chr5_1:39578634-39578653 Msa0730430:intron 40.0%
GTAGAGAGAAGAACAGCAAT+AGG + chr5_1:39578656-39578675 Msa0730430:intron 40.0%
CTCTGAATTCCCTATGATAC+TGG + chr5_1:39579008-39579027 Msa0730430:intron 40.0%
ACGCGACCAAGAAACAAAAA+TGG + chr5_1:39579044-39579063 Msa0730430:intron 40.0%
! TTGATAACCCCTAGATGAGA+AGG + chr5_1:39579120-39579139 Msa0730430:intron 40.0%
ATCAGGTTCCTTCTCATCTA+GGG - chr5_1:39579131-39579150 None:intergenic 40.0%
AATCAGGTTCCTTCTCATCT+AGG - chr5_1:39579132-39579151 None:intergenic 40.0%
AAAAACAATGGAGGGTCTGT+CGG - chr5_1:39579162-39579181 None:intergenic 40.0%
AGGATTTGGAAATGTGAGGA+GGG - chr5_1:39579239-39579258 None:intergenic 40.0%
GGGAAGTGAAAGAGAAAAAC+AGG - chr5_1:39579358-39579377 None:intergenic 40.0%
ATTGACAGGCCCAATTAACA+AGG - chr5_1:39579413-39579432 None:intergenic 40.0%
!! TAAGGTATTTTGTGAGGGCA+TGG + chr5_1:39579502-39579521 Msa0730430:intron 40.0%
TGTGAAGTAATAGCGAAGAG+AGG - chr5_1:39579657-39579676 None:intergenic 40.0%
TCTCTTCGCTATTACTTCAC+AGG + chr5_1:39579656-39579675 Msa0730430:intron 40.0%
CTCTTCGCTATTACTTCACA+GGG + chr5_1:39579657-39579676 Msa0730430:intron 40.0%
TACAGTTCAGATGTTGCAAC+TGG + chr5_1:39579723-39579742 Msa0730430:CDS 40.0%
TCAGATGTTGCAACTGGTTA+TGG + chr5_1:39579729-39579748 Msa0730430:CDS 40.0%
TTCAGGTGAATCACTGCTTA+TGG + chr5_1:39579776-39579795 Msa0730430:CDS 40.0%
TCAGGTGAATCACTGCTTAT+GGG + chr5_1:39579777-39579796 Msa0730430:CDS 40.0%
TGACAAAGTGCATGTGCTTT+GGG + chr5_1:39579802-39579821 Msa0730430:CDS 40.0%
AGAGCCAAACTAACGAACAA+AGG + chr5_1:39580180-39580199 Msa0730430:intron 40.0%
GTGTCCTTTGTTCGTTAGTT+TGG - chr5_1:39580187-39580206 None:intergenic 40.0%
! ACACAACCCTTCACTCATTT+TGG + chr5_1:39580343-39580362 Msa0730430:intron 40.0%
GAAAAGTAGCCCTGGAAAAA+AGG - chr5_1:39580567-39580586 None:intergenic 40.0%
!!! TTTTTCCAGGGCTACTTTTC+TGG + chr5_1:39580567-39580586 Msa0730430:intron 40.0%
GCAGAATCATGCTTAATAGC+TGG + chr5_1:39580592-39580611 Msa0730430:CDS 40.0%
ATGCCTATCACACCAAATAC+CGG + chr5_1:39580626-39580645 Msa0730430:CDS 40.0%
ACTTCTCCTGTGAAAGTTTG+AGG + chr5_1:39580668-39580687 Msa0730430:CDS 40.0%
TCCTGTGAAAGTTTGAGGAA+AGG + chr5_1:39580673-39580692 Msa0730430:CDS 40.0%
!! AGGAAAGGCATCTTCATTAC+CGG + chr5_1:39580688-39580707 Msa0730430:CDS 40.0%
TACGACGATGAAAATTGCTC+CGG - chr5_1:39580710-39580729 None:intergenic 40.0%
CACTTTCTCAGAAGACCAAT+CGG + chr5_1:39580785-39580804 Msa0730430:CDS 40.0%
ACTTTCTCAGAAGACCAATC+GGG + chr5_1:39580786-39580805 Msa0730430:CDS 40.0%
!!! TGGTGGATTTTACTGCTCTA+AGG + chr5_1:39580979-39580998 Msa0730430:three_prime_UTR 40.0%
CGAAGGGGATATATGTAATC+AGG + chr5_1:39581032-39581051 Msa0730430:three_prime_UTR 40.0%
CACAGACCCATTTCACAAAG+TGG + chr5_1:39576264-39576283 Msa0730430:five_prime_UTR 45.0%
GTAAAAATGGCTGAGGGAAG+AGG + chr5_1:39576286-39576305 Msa0730430:exon 45.0%
TGGTCTCATGTCAATTTGGG+TGG - chr5_1:39576737-39576756 None:intergenic 45.0%
CCGTGGTCTCATGTCAATTT+GGG - chr5_1:39576740-39576759 None:intergenic 45.0%
CCCAAATTGACATGAGACCA+CGG + chr5_1:39576737-39576756 Msa0730430:intron 45.0%
CCAAATTGACATGAGACCAC+GGG + chr5_1:39576738-39576757 Msa0730430:intron 45.0%
!! CCTCAATTGTGGTATTGGCT+TGG - chr5_1:39576778-39576797 None:intergenic 45.0%
CCAAGCCAATACCACAATTG+AGG + chr5_1:39576775-39576794 Msa0730430:intron 45.0%
CATTGGAAAAACGAGGTCTC+TGG + chr5_1:39577409-39577428 Msa0730430:intron 45.0%
!! CTCTGGAATAGGGAAGTTTC+TGG + chr5_1:39577426-39577445 Msa0730430:intron 45.0%
! TGGAATAGGGAAGTTTCTGG+AGG + chr5_1:39577429-39577448 Msa0730430:intron 45.0%
! AATAGGGAAGTTTCTGGAGG+TGG + chr5_1:39577432-39577451 Msa0730430:intron 45.0%
AAAGGGGAAATGGCAACACA+GGG - chr5_1:39577724-39577743 None:intergenic 45.0%
! TGGACTGCATGTCATTTGTC+CGG + chr5_1:39577875-39577894 Msa0730430:intron 45.0%
AGAATGATACGCTACTGTGC+CGG - chr5_1:39577897-39577916 None:intergenic 45.0%
GGTCCTCTTTACACAGTAGA+AGG - chr5_1:39577983-39578002 None:intergenic 45.0%
AAGAAGGGTTGAGTAGATGG+AGG + chr5_1:39578018-39578037 Msa0730430:intron 45.0%
! GGAGGCATAGTAGTCAATAG+CGG + chr5_1:39578036-39578055 Msa0730430:intron 45.0%
ACAGAACAGCAGAAAAGCAG+AGG - chr5_1:39578259-39578278 None:intergenic 45.0%
TAGAGGAAGATTTACCGCAG+AGG - chr5_1:39578294-39578313 None:intergenic 45.0%
AGAGAGAGCAGAATGGAGTT+TGG - chr5_1:39578422-39578441 None:intergenic 45.0%
CAGAAACAGAGAGAGCAGAA+TGG - chr5_1:39578429-39578448 None:intergenic 45.0%
GACCCCAAAAATGCTATAGC+GGG - chr5_1:39578573-39578592 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG - chr5_1:39578574-39578593 None:intergenic 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG + chr5_1:39578572-39578591 Msa0730430:intron 45.0%
CAGCAATAGGTCAAACCACT+AGG + chr5_1:39578669-39578688 Msa0730430:intron 45.0%
CAAACCACTAGGAGAGTTCT+AGG + chr5_1:39578680-39578699 Msa0730430:intron 45.0%
AATGCCTAGAACTCTCCTAG+TGG - chr5_1:39578687-39578706 None:intergenic 45.0%
!! CTAGGAGAGTTCTAGGCATT+TGG + chr5_1:39578687-39578706 Msa0730430:intron 45.0%
AGACCAAGAGGTCATAGGTT+AGG - chr5_1:39578714-39578733 None:intergenic 45.0%
TCAGGTTCCTTCTCATCTAG+GGG - chr5_1:39579130-39579149 None:intergenic 45.0%
AAAACAATGGAGGGTCTGTC+GGG - chr5_1:39579161-39579180 None:intergenic 45.0%
GAGGATTTGGAAATGTGAGG+AGG - chr5_1:39579240-39579259 None:intergenic 45.0%
ATAGGGAATTGGGGAGGATT+TGG - chr5_1:39579253-39579272 None:intergenic 45.0%
! GATGATGGCATAGGGAATTG+GGG - chr5_1:39579262-39579281 None:intergenic 45.0%
! GGATGATGGCATAGGGAATT+GGG - chr5_1:39579263-39579282 None:intergenic 45.0%
! AGGATGATGGCATAGGGAAT+TGG - chr5_1:39579264-39579283 None:intergenic 45.0%
! CTTTTACATGAAGGCCTCGA+TGG + chr5_1:39579324-39579343 Msa0730430:intron 45.0%
AGGCCCAATTAACAAGGCAA+TGG - chr5_1:39579407-39579426 None:intergenic 45.0%
GAAGTAATAGCGAAGAGAGG+AGG - chr5_1:39579654-39579673 None:intergenic 45.0%
TGTTCCTGGAGTTGTGTGAA+TGG - chr5_1:39579685-39579704 None:intergenic 45.0%
TGTTGCAACTGGTTATGGAG+TGG + chr5_1:39579734-39579753 Msa0730430:CDS 45.0%
GTTGCAACTGGTTATGGAGT+GGG + chr5_1:39579735-39579754 Msa0730430:CDS 45.0%
GTGACAAAGTGCATGTGCTT+TGG + chr5_1:39579801-39579820 Msa0730430:CDS 45.0%
TTCATCTGAGCACCCTGATA+CGG + chr5_1:39579920-39579939 Msa0730430:intron 45.0%
!! TTAGTTTGGCTCTCGAATGG+GGG - chr5_1:39580173-39580192 None:intergenic 45.0%
!! GTTAGTTTGGCTCTCGAATG+GGG - chr5_1:39580174-39580193 None:intergenic 45.0%
!! CGTTAGTTTGGCTCTCGAAT+GGG - chr5_1:39580175-39580194 None:intergenic 45.0%
!! TCGTTAGTTTGGCTCTCGAA+TGG - chr5_1:39580176-39580195 None:intergenic 45.0%
TGCCTATCACACCAAATACC+GGG + chr5_1:39580627-39580646 Msa0730430:CDS 45.0%
GCCTTTCCTCAAACTTTCAC+AGG - chr5_1:39580677-39580696 None:intergenic 45.0%
! CTTCTGAGAAAGTGGAGTAG+TGG - chr5_1:39580779-39580798 None:intergenic 45.0%
!! CGATTGGTCTTCTGAGAAAG+TGG - chr5_1:39580787-39580806 None:intergenic 45.0%
AATCGTGGAACTAACCCGAT+TGG - chr5_1:39580803-39580822 None:intergenic 45.0%
!! AATCGGGTTAGTTCCACGAT+TGG + chr5_1:39580802-39580821 Msa0730430:CDS 45.0%
AGTTCCACGATTGGAATGAC+CGG + chr5_1:39580811-39580830 Msa0730430:CDS 45.0%
CAAGGTCAATCATGCATGTC+CGG - chr5_1:39580833-39580852 None:intergenic 45.0%
CCCGTGGTCTCATGTCAATT+TGG - chr5_1:39576741-39576760 None:intergenic 50.0%
! GTTTCTGGAGGTGGAATGTG+AGG + chr5_1:39577441-39577460 Msa0730430:intron 50.0%
AGGTGGAATGTGAGGTGAGA+TGG + chr5_1:39577449-39577468 Msa0730430:intron 50.0%
GGTGGAATGTGAGGTGAGAT+GGG + chr5_1:39577450-39577469 Msa0730430:intron 50.0%
GTGGAATGTGAGGTGAGATG+GGG + chr5_1:39577451-39577470 Msa0730430:intron 50.0%
TGGAATGTGAGGTGAGATGG+GGG + chr5_1:39577452-39577471 Msa0730430:intron 50.0%
CAAAGGGGAAATGGCAACAC+AGG - chr5_1:39577725-39577744 None:intergenic 50.0%
TTGCGCATGCAAAGGGGAAA+TGG - chr5_1:39577734-39577753 None:intergenic 50.0%
CTTCACTTGCGCATGCAAAG+GGG - chr5_1:39577740-39577759 None:intergenic 50.0%
CCTTCACTTGCGCATGCAAA+GGG - chr5_1:39577741-39577760 None:intergenic 50.0%
ATGTATTCTAGCACCAGGCC+CGG - chr5_1:39577848-39577867 None:intergenic 50.0%
TATCTCACACCGCAACGCTA+TGG - chr5_1:39578123-39578142 None:intergenic 50.0%
GGACCTAACCTATGACCTCT+TGG + chr5_1:39578708-39578727 Msa0730430:intron 50.0%
CCTATGACCTCTTGGTCTCA+CGG + chr5_1:39578716-39578735 Msa0730430:intron 50.0%
AAACAATGGAGGGTCTGTCG+GGG - chr5_1:39579160-39579179 None:intergenic 50.0%
AGGGTGTAACAGAATCGAGG+AGG - chr5_1:39579201-39579220 None:intergenic 50.0%
! CAGAGGGTGTAACAGAATCG+AGG - chr5_1:39579204-39579223 None:intergenic 50.0%
CTCGATTCTGTTACACCCTC+TGG + chr5_1:39579202-39579221 Msa0730430:intron 50.0%
AGGGAGACGAGTATACCAGA+GGG - chr5_1:39579220-39579239 None:intergenic 50.0%
GGGGAGGATTTGGAAATGTG+AGG - chr5_1:39579243-39579262 None:intergenic 50.0%
AACAGGCTTGAAAGCCATCG+AGG - chr5_1:39579341-39579360 None:intergenic 50.0%
GGAACCATTCACACAACTCC+AGG + chr5_1:39579678-39579697 Msa0730430:CDS 50.0%
! CAAAGTGCATGTGCTTTGGG+AGG + chr5_1:39579805-39579824 Msa0730430:CDS 50.0%
TGCAACCAGAAAAGTAGCCC+TGG - chr5_1:39580575-39580594 None:intergenic 50.0%
GCCTATCACACCAAATACCG+GGG + chr5_1:39580628-39580647 Msa0730430:CDS 50.0%
!! TCCCCGGTATTTGGTGTGAT+AGG - chr5_1:39580632-39580651 None:intergenic 50.0%
ATGTCCGGTCATTCCAATCG+TGG - chr5_1:39580818-39580837 None:intergenic 50.0%
CGGACATGCATGATTGACCT+TGG + chr5_1:39580831-39580850 Msa0730430:exon 50.0%
!! GTGGTATTGGCTTGGGACCT+GGG - chr5_1:39576770-39576789 None:intergenic 55.0%
!! TGTGGTATTGGCTTGGGACC+TGG - chr5_1:39576771-39576790 None:intergenic 55.0%
GGAATGTGAGGTGAGATGGG+GGG + chr5_1:39577453-39577472 Msa0730430:intron 55.0%
CCCTTTGCATGCGCAAGTGA+AGG + chr5_1:39577738-39577757 Msa0730430:intron 55.0%
GCCTTCACTTGCGCATGCAA+AGG - chr5_1:39577742-39577761 None:intergenic 55.0%
ATGGTACAACATACCGGGCC+TGG + chr5_1:39577832-39577851 Msa0730430:intron 55.0%
CGCAACAAGCCATAGCGTTG+CGG + chr5_1:39578111-39578130 Msa0730430:intron 55.0%
AGCGTTGCGGTGTGAGATAG+TGG + chr5_1:39578124-39578143 Msa0730430:intron 55.0%
! GTTGCGGTGTGAGATAGTGG+CGG + chr5_1:39578127-39578146 Msa0730430:intron 55.0%
CCGTGAGACCAAGAGGTCAT+AGG - chr5_1:39578719-39578738 None:intergenic 55.0%
ATTCGTGCCGTGAGACCAAG+AGG - chr5_1:39578726-39578745 None:intergenic 55.0%
GAGGGAGACGAGTATACCAG+AGG - chr5_1:39579221-39579240 None:intergenic 55.0%
GATGGCATAGGGAATTGGGG+AGG - chr5_1:39579259-39579278 None:intergenic 55.0%
TTTGGGAGGCCTTTAACCCC+TGG + chr5_1:39579819-39579838 Msa0730430:CDS 55.0%
TTGGGAGGCCTTTAACCCCT+GGG + chr5_1:39579820-39579839 Msa0730430:CDS 55.0%
CGATTTCCCCCAGGGGTTAA+AGG - chr5_1:39579831-39579850 None:intergenic 55.0%
ACCAAGCTCGATTTCCCCCA+GGG - chr5_1:39579839-39579858 None:intergenic 55.0%
GGCCAATAGCGCCGCTATAG+CGG + chr5_1:39578057-39578076 Msa0730430:intron 60.0%
!! TGGCTTGTTGCGTAGCGCTC+CGG - chr5_1:39578103-39578122 None:intergenic 60.0%
! AGTGGCGGAACGCTTCGTAG+CGG + chr5_1:39578142-39578161 Msa0730430:intron 60.0%
GTCTGTCGGGGTAGGGAATC+AGG - chr5_1:39579148-39579167 None:intergenic 60.0%
ATGGAGGGTCTGTCGGGGTA+GGG - chr5_1:39579155-39579174 None:intergenic 60.0%
AATGGAGGGTCTGTCGGGGT+AGG - chr5_1:39579156-39579175 None:intergenic 60.0%
TGGGAGGCCTTTAACCCCTG+GGG + chr5_1:39579821-39579840 Msa0730430:CDS 60.0%
CCAAGCTCGATTTCCCCCAG+GGG - chr5_1:39579838-39579857 None:intergenic 60.0%
GACCAAGCTCGATTTCCCCC+AGG - chr5_1:39579840-39579859 None:intergenic 60.0%
GAGACCACGGGAACACTCCC+AGG + chr5_1:39576750-39576769 Msa0730430:intron 65.0%
GGCCGCTATAGCGGCGCTAT+TGG - chr5_1:39578062-39578081 None:intergenic 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG - chr5_1:39578598-39578617 None:intergenic 65.0%
GGGAGGCCTTTAACCCCTGG+GGG + chr5_1:39579822-39579841 Msa0730430:CDS 65.0%
CCCCTGGGGGAAATCGAGCT+TGG + chr5_1:39579835-39579854 Msa0730430:CDS 65.0%
!! GGGACCTGGGAGTGTTCCCG+TGG - chr5_1:39576757-39576776 None:intergenic 70.0%
GCACCGCGCGGCCGCTATAG+CGG - chr5_1:39578071-39578090 None:intergenic 75.0%
GCTATAGCGGCCGCGCGGTG+CGG + chr5_1:39578070-39578089 Msa0730430:intron 75.0%
! GCGCCGCTATAGCGGCCGCG+CGG + chr5_1:39578065-39578084 Msa0730430:intron 80.0%
! CGGCATCGCACCGCACCGCG+CGG - chr5_1:39578083-39578102 None:intergenic 80.0%
! CGCGCGGTGCGGTGCGATGC+CGG + chr5_1:39578081-39578100 Msa0730430:intron 80.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 39576158 39581182 39576158 ID=Msa0730430;Name=Msa0730430
chr5_1 mRNA 39576158 39581182 39576158 ID=Msa0730430-mRNA-1;Parent=Msa0730430;Name=Msa0730430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=134|1|1|1|1|1|3|339|191
chr5_1 exon 39576158 39576393 39576158 ID=Msa0730430-mRNA-1:exon:11673;Parent=Msa0730430-mRNA-1
chr5_1 exon 39579678 39579883 39579678 ID=Msa0730430-mRNA-1:exon:11674;Parent=Msa0730430-mRNA-1
chr5_1 exon 39580576 39581182 39580576 ID=Msa0730430-mRNA-1:exon:11675;Parent=Msa0730430-mRNA-1
chr5_1 five_prime_UTR 39576158 39576291 39576158 ID=Msa0730430-mRNA-1:five_prime_utr;Parent=Msa0730430-mRNA-1
chr5_1 CDS 39576292 39576393 39576292 ID=Msa0730430-mRNA-1:cds;Parent=Msa0730430-mRNA-1
chr5_1 CDS 39579678 39579883 39579678 ID=Msa0730430-mRNA-1:cds;Parent=Msa0730430-mRNA-1
chr5_1 CDS 39580576 39580843 39580576 ID=Msa0730430-mRNA-1:cds;Parent=Msa0730430-mRNA-1
chr5_1 three_prime_UTR 39580844 39581182 39580844 ID=Msa0730430-mRNA-1:three_prime_utr;Parent=Msa0730430-mRNA-1
Gene Sequence

>Msa0730430

ATGGCTGAGGGAAGAGGTTCTACTCTTGTGCATCTTTTAGTCATTGTTTGTTGCTTAGTTGCATTTGGTTTTGCTGTTGCTGCTGAGAGAAGAAGAAGTGTTGGAACCATTCACACAACTCCAGGAACAAATGAAACATATTGCGTTTACAGTTCAGATGTTGCAACTGGTTATGGAGTGGGTGCTTTCCTATTTCTTCTTTCAGGTGAATCACTGCTTATGGGTGTGACAAAGTGCATGTGCTTTGGGAGGCCTTTAACCCCTGGGGGAAATCGAGCTTGGTCCATTATATATTTTCTTTCTTCTTGGGCTACTTTTCTGGTTGCAGAATCATGCTTAATAGCTGGTGCAAAAAAGAATGCCTATCACACCAAATACCGGGGAATTATTTATGCTCAGAACTTCTCCTGTGAAAGTTTGAGGAAAGGCATCTTCATTACCGGAGCAATTTTCATCGTCGTAACGATGGTTCTTAACGTATACTACTACATGTACTTCACAAAGGCAACCACTACTCCACTTTCTCAGAAGACCAATCGGGTTAGTTCCACGATTGGAATGACCGGACATGCATGA

Protein sequence

>Msa0730430

MAEGRGSTLVHLLVIVCCLVAFGFAVAAERRRSVGTIHTTPGTNETYCVYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSIIYFLSSWATFLVAESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKATTTPLSQKTNRVSSTIGMTGHA*