Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011790 | AES59897.2 | 75.314 | 239 | 50 | 7 | 15 | 248 | 15 | 249 | 4.70e-108 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011790 | G7I977 | 75.314 | 239 | 50 | 7 | 15 | 248 | 15 | 249 | 2.24e-108 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011790 | Msa0021340 | 0.858622 | 7.257588e-63 | -8.615850e-47 |
| Msa0011790 | Msa0229630 | 0.826825 | 2.192799e-54 | -8.615850e-47 |
| Msa0011790 | Msa0968410 | 0.808543 | 2.940926e-50 | -8.615850e-47 |
| Msa0011790 | Msa0968430 | 0.847400 | 1.184900e-59 | -8.615850e-47 |
| Msa0011790 | Msa1389180 | 0.808847 | 2.532946e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011790 | MtrunA17_Chr1g0160711 | 75.107 | 233 | 50 | 6 | 21 | 248 | 17 | 246 | 1.15e-110 | 332 |
| Msa0011790 | MtrunA17_Chr1g0160761 | 69.380 | 258 | 64 | 6 | 1 | 248 | 1 | 253 | 4.01e-109 | 328 |
| Msa0011790 | MtrunA17_Chr1g0160721 | 61.417 | 254 | 85 | 5 | 1 | 252 | 12 | 254 | 8.85e-91 | 281 |
| Msa0011790 | MtrunA17_Chr1g0160661 | 58.103 | 253 | 93 | 5 | 1 | 251 | 27 | 268 | 3.19e-86 | 265 |
| Msa0011790 | MtrunA17_Chr1g0160561 | 52.091 | 263 | 104 | 8 | 2 | 250 | 7 | 261 | 4.08e-76 | 243 |
| Msa0011790 | MtrunA17_Chr1g0160701 | 59.583 | 240 | 74 | 11 | 17 | 244 | 32 | 260 | 1.57e-72 | 234 |
| Msa0011790 | MtrunA17_Chr1g0157791 | 35.102 | 245 | 130 | 10 | 7 | 233 | 6 | 239 | 5.63e-30 | 118 |
| Msa0011790 | MtrunA17_Chr1g0158151 | 34.317 | 271 | 144 | 13 | 1 | 247 | 1 | 261 | 1.26e-28 | 114 |
| Msa0011790 | MtrunA17_Chr1g0158061 | 35.321 | 218 | 119 | 9 | 28 | 232 | 29 | 237 | 1.90e-28 | 109 |
| Msa0011790 | MtrunA17_Chr1g0157961 | 35.874 | 223 | 122 | 8 | 24 | 233 | 33 | 247 | 4.12e-28 | 108 |
| Msa0011790 | MtrunA17_Chr1g0157991 | 36.123 | 227 | 120 | 8 | 24 | 233 | 28 | 246 | 4.96e-28 | 112 |
| Msa0011790 | MtrunA17_Chr1g0158191 | 34.109 | 258 | 121 | 14 | 10 | 234 | 4 | 245 | 7.99e-28 | 112 |
| Msa0011790 | MtrunA17_Chr3g0088331 | 33.197 | 244 | 127 | 10 | 24 | 252 | 36 | 258 | 6.78e-27 | 105 |
| Msa0011790 | MtrunA17_Chr1g0158411 | 32.287 | 223 | 120 | 8 | 26 | 234 | 46 | 251 | 1.95e-24 | 102 |
| Msa0011790 | MtrunA17_Chr1g0158041 | 33.628 | 226 | 123 | 8 | 26 | 233 | 28 | 244 | 2.06e-23 | 99.0 |
| Msa0011790 | MtrunA17_Chr6g0467711 | 35.556 | 225 | 106 | 11 | 29 | 234 | 43 | 247 | 2.31e-23 | 99.0 |
| Msa0011790 | MtrunA17_Chr1g0158461 | 30.224 | 268 | 143 | 12 | 1 | 234 | 17 | 274 | 2.64e-23 | 96.3 |
| Msa0011790 | MtrunA17_Chr1g0158761 | 32.927 | 246 | 125 | 11 | 1 | 234 | 1 | 218 | 5.59e-23 | 97.8 |
| Msa0011790 | MtrunA17_Chr1g0157881 | 29.861 | 288 | 129 | 12 | 8 | 234 | 34 | 309 | 7.32e-23 | 97.4 |
| Msa0011790 | MtrunA17_Chr1g0158731 | 29.960 | 247 | 144 | 10 | 4 | 234 | 8 | 241 | 7.55e-22 | 92.4 |
| Msa0011790 | MtrunA17_Chr1g0158331 | 30.189 | 265 | 140 | 13 | 1 | 234 | 17 | 267 | 7.16e-21 | 90.1 |
| Msa0011790 | MtrunA17_Chr1g0158541 | 32.794 | 247 | 137 | 11 | 5 | 234 | 16 | 250 | 6.37e-20 | 89.0 |
| Msa0011790 | MtrunA17_Chr1g0158661 | 29.268 | 246 | 136 | 9 | 7 | 233 | 17 | 243 | 1.68e-19 | 87.8 |
| Msa0011790 | MtrunA17_Chr1g0158631 | 29.304 | 273 | 144 | 12 | 7 | 251 | 17 | 268 | 2.77e-19 | 87.0 |
| Msa0011790 | MtrunA17_Chr1g0157861 | 29.057 | 265 | 115 | 13 | 26 | 234 | 37 | 284 | 9.59e-19 | 85.5 |
| Msa0011790 | MtrunA17_Chr1g0157911 | 30.435 | 230 | 124 | 11 | 27 | 234 | 35 | 250 | 1.30e-18 | 85.1 |
| Msa0011790 | MtrunA17_Chr1g0158301 | 29.268 | 246 | 143 | 10 | 5 | 234 | 18 | 248 | 1.95e-15 | 75.9 |
| Msa0011790 | MtrunA17_Chr1g0158121 | 48.148 | 81 | 36 | 2 | 24 | 103 | 29 | 104 | 4.21e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCCTCCTTATTATTCTTT+AGG | 0.151819 | 1_1:-17727586 | Msa0011790:CDS |
| CCAAACACTCACTTTACTTT+AGG | 0.154474 | 1_1:-17727137 | None:intergenic |
| TCCCTCCTTATTATTCTTTA+GGG | 0.210688 | 1_1:-17727585 | Msa0011790:CDS |
| TTTATGGATTTGAACTTTCT+TGG | 0.219600 | 1_1:-17727240 | Msa0011790:CDS |
| CATTATTGTCCTCACATAAT+AGG | 0.236387 | 1_1:+17727725 | None:intergenic |
| CAAACACTCACTTTACTTTA+GGG | 0.251706 | 1_1:-17727136 | None:intergenic |
| CAACTTCACCATACGACTAT+TGG | 0.252740 | 1_1:-17727635 | Msa0011790:CDS |
| CTCTTGTCACCACATTCTTC+TGG | 0.284196 | 1_1:+17727754 | None:intergenic |
| CCTAAAGTAAAGTGAGTGTT+TGG | 0.326997 | 1_1:+17727137 | None:intergenic |
| TAGAGCCCTAAAGAATAATA+AGG | 0.353798 | 1_1:+17727580 | None:intergenic |
| TCTCTTTCAGATTTGGGACT+TGG | 0.355277 | 1_1:-17727355 | Msa0011790:CDS |
| CTCAATAGTCTTTGTAATGA+AGG | 0.356928 | 1_1:-17727217 | Msa0011790:CDS |
| CAGATTTGGGACTTGGAGAC+GGG | 0.442912 | 1_1:-17727348 | Msa0011790:CDS |
| ACTTGGAGACGGGTGTCATA+TGG | 0.443107 | 1_1:-17727338 | Msa0011790:CDS |
| CAGCATTTATGTATAGATCC+AGG | 0.447944 | 1_1:-17727166 | Msa0011790:CDS |
| TTTCGTATCCATTAAAAGCT+AGG | 0.462412 | 1_1:+17727524 | None:intergenic |
| TAACAGCACGACAAGGGTTA+AGG | 0.463192 | 1_1:+17727891 | None:intergenic |
| ACATCATGGCCTCTTGAAGA+TGG | 0.468797 | 1_1:-17727301 | Msa0011790:CDS |
| GAGAATTCTTTCTATGTTGG+TGG | 0.469005 | 1_1:-17727388 | Msa0011790:CDS |
| TACGAGAATTCTTTCTATGT+TGG | 0.482804 | 1_1:-17727391 | Msa0011790:CDS |
| TCAGATTTGGGACTTGGAGA+CGG | 0.489585 | 1_1:-17727349 | Msa0011790:CDS |
| CTAAAGTAAAGTGAGTGTTT+GGG | 0.521706 | 1_1:+17727138 | None:intergenic |
| GTATCCATTAAAAGCTAGGT+AGG | 0.522243 | 1_1:+17727528 | None:intergenic |
| CGGTCGGAATATATTGATGA+AGG | 0.526826 | 1_1:-17727448 | Msa0011790:CDS |
| GTGAGTGTTTGGGACAAACC+TGG | 0.534117 | 1_1:+17727148 | None:intergenic |
| CTGGATCTATACATAAATGC+TGG | 0.539585 | 1_1:+17727167 | None:intergenic |
| TAAAGAATAATAAGGAGGGA+TGG | 0.555369 | 1_1:+17727588 | None:intergenic |
| TTCTACAGACATGCATCGAA+TGG | 0.562503 | 1_1:-17727266 | Msa0011790:CDS |
| ATTGAAATCCAATAGTCGTA+TGG | 0.568248 | 1_1:+17727627 | None:intergenic |
| AATCTATGTATCTCACATCA+TGG | 0.571651 | 1_1:-17727315 | Msa0011790:CDS |
| GCCCTAAAGAATAATAAGGA+GGG | 0.574069 | 1_1:+17727584 | None:intergenic |
| TTCTCGTACAACAAAGTGCA+TGG | 0.590113 | 1_1:-17727856 | Msa0011790:CDS |
| AACAAGAGTCATGTTCAAGA+AGG | 0.596613 | 1_1:-17727825 | Msa0011790:CDS |
| ATATTGTTTCCATCTTCAAG+AGG | 0.599725 | 1_1:+17727292 | None:intergenic |
| AAGAGTCATGTTCAAGAAGG+TGG | 0.600098 | 1_1:-17727822 | Msa0011790:CDS |
| ATTAAAAGCTAGGTAGGGTG+AGG | 0.606952 | 1_1:+17727534 | None:intergenic |
| CAGAAGAATGTGGTGACAAG+AGG | 0.621774 | 1_1:-17727753 | Msa0011790:CDS |
| AGCCCTAAAGAATAATAAGG+AGG | 0.622034 | 1_1:+17727583 | None:intergenic |
| TATCCATTAAAAGCTAGGTA+GGG | 0.625375 | 1_1:+17727529 | None:intergenic |
| GTATTAGTAACAGCACGACA+AGG | 0.628217 | 1_1:+17727884 | None:intergenic |
| TCGGAATATATTGATGAAGG+TGG | 0.639500 | 1_1:-17727445 | Msa0011790:CDS |
| TATTAGTAACAGCACGACAA+GGG | 0.651789 | 1_1:+17727885 | None:intergenic |
| TATGAATTTGAAGAACACCA+TGG | 0.674399 | 1_1:-17727688 | Msa0011790:CDS |
| GAGGTACAACCTATTATGTG+AGG | 0.678478 | 1_1:-17727734 | Msa0011790:CDS |
| TCATGTTCAAGAAGGTGGTG+CGG | 0.678993 | 1_1:-17727817 | Msa0011790:CDS |
| AAAGACAGTCCAGAAGAATG+TGG | 0.689791 | 1_1:-17727763 | Msa0011790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTACATAATATTTTCCA+TGG | + | chr1_1:17727368-17727387 | None:intergenic | 20.0% |
| !!! | ATTGTACATAATATTTTCCA+TGG | + | chr1_1:17727368-17727387 | None:intergenic | 20.0% |
| ! | TATATGTGAGCTGTAAAAAT+CGG | - | chr1_1:17727568-17727587 | Msa0011790:CDS | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | chr1_1:17727675-17727694 | Msa0011790:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | chr1_1:17727796-17727815 | Msa0011790:CDS | 25.0% |
| ! | TATATGTGAGCTGTAAAAAT+CGG | - | chr1_1:17727568-17727587 | Msa0011790:CDS | 25.0% |
| ! | CAAAAATCTCTTTCAGATTT+GGG | - | chr1_1:17727675-17727694 | Msa0011790:CDS | 25.0% |
| ! | TTTATGGATTTGAACTTTCT+TGG | - | chr1_1:17727796-17727815 | Msa0011790:CDS | 25.0% |
| CATTATTGTCCTCACATAAT+AGG | + | chr1_1:17727314-17727333 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | - | chr1_1:17727348-17727367 | Msa0011790:CDS | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | + | chr1_1:17727412-17727431 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | + | chr1_1:17727451-17727470 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | - | chr1_1:17727450-17727469 | Msa0011790:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | - | chr1_1:17727451-17727470 | Msa0011790:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | + | chr1_1:17727459-17727478 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | + | chr1_1:17727510-17727529 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | + | chr1_1:17727515-17727534 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | - | chr1_1:17727645-17727664 | Msa0011790:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | chr1_1:17727677-17727696 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | chr1_1:17727674-17727693 | Msa0011790:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_1:17727721-17727740 | Msa0011790:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | + | chr1_1:17727747-17727766 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+AGG | - | chr1_1:17727819-17727838 | Msa0011790:CDS | 30.0% | |
| CTAAAGTAAAGTGAGTGTTT+GGG | + | chr1_1:17727901-17727920 | None:intergenic | 30.0% | |
| CATTATTGTCCTCACATAAT+AGG | + | chr1_1:17727314-17727333 | None:intergenic | 30.0% | |
| TATGAATTTGAAGAACACCA+TGG | - | chr1_1:17727348-17727367 | Msa0011790:CDS | 30.0% | |
| ATTGAAATCCAATAGTCGTA+TGG | + | chr1_1:17727412-17727431 | None:intergenic | 30.0% | |
| TAAAGAATAATAAGGAGGGA+TGG | + | chr1_1:17727451-17727470 | None:intergenic | 30.0% | |
| ATCCCTCCTTATTATTCTTT+AGG | - | chr1_1:17727450-17727469 | Msa0011790:CDS | 30.0% | |
| TCCCTCCTTATTATTCTTTA+GGG | - | chr1_1:17727451-17727470 | Msa0011790:CDS | 30.0% | |
| TAGAGCCCTAAAGAATAATA+AGG | + | chr1_1:17727459-17727478 | None:intergenic | 30.0% | |
| TATCCATTAAAAGCTAGGTA+GGG | + | chr1_1:17727510-17727529 | None:intergenic | 30.0% | |
| TTTCGTATCCATTAAAAGCT+AGG | + | chr1_1:17727515-17727534 | None:intergenic | 30.0% | |
| TACGAGAATTCTTTCTATGT+TGG | - | chr1_1:17727645-17727664 | Msa0011790:CDS | 30.0% | |
| ! | CCAAATCTGAAAGAGATTTT+TGG | + | chr1_1:17727677-17727696 | None:intergenic | 30.0% |
| CCAAAAATCTCTTTCAGATT+TGG | - | chr1_1:17727674-17727693 | Msa0011790:CDS | 30.0% | |
| AATCTATGTATCTCACATCA+TGG | - | chr1_1:17727721-17727740 | Msa0011790:CDS | 30.0% | |
| ATATTGTTTCCATCTTCAAG+AGG | + | chr1_1:17727747-17727766 | None:intergenic | 30.0% | |
| CTCAATAGTCTTTGTAATGA+AGG | - | chr1_1:17727819-17727838 | Msa0011790:CDS | 30.0% | |
| CTAAAGTAAAGTGAGTGTTT+GGG | + | chr1_1:17727901-17727920 | None:intergenic | 30.0% | |
| TATTAGTAACAGCACGACAA+GGG | + | chr1_1:17727154-17727173 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_1:17727211-17727230 | Msa0011790:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | chr1_1:17727247-17727266 | Msa0011790:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | chr1_1:17727260-17727279 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | + | chr1_1:17727455-17727474 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | + | chr1_1:17727456-17727475 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | + | chr1_1:17727511-17727530 | None:intergenic | 35.0% | |
| TCGGAATATATTGATGAAGG+TGG | - | chr1_1:17727591-17727610 | Msa0011790:CDS | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | - | chr1_1:17727648-17727667 | Msa0011790:CDS | 35.0% | |
| ! | ATGCATCGAATGGTGTTTTA+TGG | - | chr1_1:17727780-17727799 | Msa0011790:CDS | 35.0% |
| CTGGATCTATACATAAATGC+TGG | + | chr1_1:17727872-17727891 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | - | chr1_1:17727870-17727889 | Msa0011790:CDS | 35.0% | |
| TATTAGTAACAGCACGACAA+GGG | + | chr1_1:17727154-17727173 | None:intergenic | 35.0% | |
| AACAAGAGTCATGTTCAAGA+AGG | - | chr1_1:17727211-17727230 | Msa0011790:CDS | 35.0% | |
| ! | ATAACATTAGCCCTCCTTTT+AGG | - | chr1_1:17727247-17727266 | Msa0011790:CDS | 35.0% |
| ! | TGTCTTTTAGCCTAAAAGGA+GGG | + | chr1_1:17727260-17727279 | None:intergenic | 35.0% |
| GCCCTAAAGAATAATAAGGA+GGG | + | chr1_1:17727455-17727474 | None:intergenic | 35.0% | |
| AGCCCTAAAGAATAATAAGG+AGG | + | chr1_1:17727456-17727475 | None:intergenic | 35.0% | |
| GTATCCATTAAAAGCTAGGT+AGG | + | chr1_1:17727511-17727530 | None:intergenic | 35.0% | |
| TCGGAATATATTGATGAAGG+TGG | - | chr1_1:17727591-17727610 | Msa0011790:CDS | 35.0% | |
| GAGAATTCTTTCTATGTTGG+TGG | - | chr1_1:17727648-17727667 | Msa0011790:CDS | 35.0% | |
| ! | ATGCATCGAATGGTGTTTTA+TGG | - | chr1_1:17727780-17727799 | Msa0011790:CDS | 35.0% |
| CTGGATCTATACATAAATGC+TGG | + | chr1_1:17727872-17727891 | None:intergenic | 35.0% | |
| CAGCATTTATGTATAGATCC+AGG | - | chr1_1:17727870-17727889 | Msa0011790:CDS | 35.0% | |
| GTATTAGTAACAGCACGACA+AGG | + | chr1_1:17727155-17727174 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | - | chr1_1:17727180-17727199 | Msa0011790:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | - | chr1_1:17727214-17727233 | Msa0011790:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | chr1_1:17727261-17727280 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | chr1_1:17727264-17727283 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | chr1_1:17727273-17727292 | Msa0011790:CDS | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | - | chr1_1:17727302-17727321 | Msa0011790:CDS | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | - | chr1_1:17727401-17727420 | Msa0011790:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | + | chr1_1:17727505-17727524 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | - | chr1_1:17727504-17727523 | Msa0011790:CDS | 40.0% |
| TGTGAGCTGTAAAAATCGGT+CGG | - | chr1_1:17727572-17727591 | Msa0011790:CDS | 40.0% | |
| CGGTCGGAATATATTGATGA+AGG | - | chr1_1:17727588-17727607 | Msa0011790:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_1:17727681-17727700 | Msa0011790:CDS | 40.0% |
| TTCTACAGACATGCATCGAA+TGG | - | chr1_1:17727770-17727789 | Msa0011790:CDS | 40.0% | |
| GTATTAGTAACAGCACGACA+AGG | + | chr1_1:17727155-17727174 | None:intergenic | 40.0% | |
| TTCTCGTACAACAAAGTGCA+TGG | - | chr1_1:17727180-17727199 | Msa0011790:CDS | 40.0% | |
| AAGAGTCATGTTCAAGAAGG+TGG | - | chr1_1:17727214-17727233 | Msa0011790:CDS | 40.0% | |
| ! | CTGTCTTTTAGCCTAAAAGG+AGG | + | chr1_1:17727261-17727280 | None:intergenic | 40.0% |
| ! | GGACTGTCTTTTAGCCTAAA+AGG | + | chr1_1:17727264-17727283 | None:intergenic | 40.0% |
| AAAGACAGTCCAGAAGAATG+TGG | - | chr1_1:17727273-17727292 | Msa0011790:CDS | 40.0% | |
| GAGGTACAACCTATTATGTG+AGG | - | chr1_1:17727302-17727321 | Msa0011790:CDS | 40.0% | |
| CAACTTCACCATACGACTAT+TGG | - | chr1_1:17727401-17727420 | Msa0011790:CDS | 40.0% | |
| ATTAAAAGCTAGGTAGGGTG+AGG | + | chr1_1:17727505-17727524 | None:intergenic | 40.0% | |
| !! | TCACCCTACCTAGCTTTTAA+TGG | - | chr1_1:17727504-17727523 | Msa0011790:CDS | 40.0% |
| TGTGAGCTGTAAAAATCGGT+CGG | - | chr1_1:17727572-17727591 | Msa0011790:CDS | 40.0% | |
| CGGTCGGAATATATTGATGA+AGG | - | chr1_1:17727588-17727607 | Msa0011790:CDS | 40.0% | |
| ! | TCTCTTTCAGATTTGGGACT+TGG | - | chr1_1:17727681-17727700 | Msa0011790:CDS | 40.0% |
| TTCTACAGACATGCATCGAA+TGG | - | chr1_1:17727770-17727789 | Msa0011790:CDS | 40.0% | |
| TAACAGCACGACAAGGGTTA+AGG | + | chr1_1:17727148-17727167 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | - | chr1_1:17727219-17727238 | Msa0011790:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | chr1_1:17727285-17727304 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | chr1_1:17727283-17727302 | Msa0011790:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_1:17727687-17727706 | Msa0011790:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | - | chr1_1:17727735-17727754 | Msa0011790:CDS | 45.0% | |
| TAACAGCACGACAAGGGTTA+AGG | + | chr1_1:17727148-17727167 | None:intergenic | 45.0% | |
| TCATGTTCAAGAAGGTGGTG+CGG | - | chr1_1:17727219-17727238 | Msa0011790:CDS | 45.0% | |
| CTCTTGTCACCACATTCTTC+TGG | + | chr1_1:17727285-17727304 | None:intergenic | 45.0% | |
| CAGAAGAATGTGGTGACAAG+AGG | - | chr1_1:17727283-17727302 | Msa0011790:CDS | 45.0% | |
| ! | TCAGATTTGGGACTTGGAGA+CGG | - | chr1_1:17727687-17727706 | Msa0011790:CDS | 45.0% |
| ACATCATGGCCTCTTGAAGA+TGG | - | chr1_1:17727735-17727754 | Msa0011790:CDS | 45.0% | |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_1:17727688-17727707 | Msa0011790:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | chr1_1:17727698-17727717 | Msa0011790:CDS | 50.0% |
| ! | GTGAGTGTTTGGGACAAACC+TGG | + | chr1_1:17727891-17727910 | None:intergenic | 50.0% |
| ! | CAGATTTGGGACTTGGAGAC+GGG | - | chr1_1:17727688-17727707 | Msa0011790:CDS | 50.0% |
| ! | ACTTGGAGACGGGTGTCATA+TGG | - | chr1_1:17727698-17727717 | Msa0011790:CDS | 50.0% |
| ! | GTGAGTGTTTGGGACAAACC+TGG | + | chr1_1:17727891-17727910 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17727138 | 17727920 | 17727138 | ID=Msa0011790;Name=Msa0011790 |
| chr1_1 | mRNA | 17727138 | 17727920 | 17727138 | ID=Msa0011790-mRNA-1;Parent=Msa0011790;Name=Msa0011790-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|-1|0|1|-1|1|1|0|260 |
| chr1_1 | exon | 17727138 | 17727920 | 17727138 | ID=Msa0011790-mRNA-1:exon:6505;Parent=Msa0011790-mRNA-1 |
| chr1_1 | CDS | 17727138 | 17727920 | 17727138 | ID=Msa0011790-mRNA-1:cds;Parent=Msa0011790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
