Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012390 | Msa0037270 | 0.804638 | 1.962269e-49 | -8.615850e-47 |
| Msa0012390 | Msa0199490 | 0.801082 | 1.065055e-48 | -8.615850e-47 |
| Msa0012390 | Msa0787410 | 0.807883 | 4.065877e-50 | -8.615850e-47 |
| Msa0012390 | Msa0942610 | 0.804337 | 2.267352e-49 | -8.615850e-47 |
| Msa0012390 | Msa1342110 | 0.819519 | 1.113288e-52 | -8.615850e-47 |
| Msa0012390 | Msa1449270 | 0.812994 | 3.203230e-51 | -8.615850e-47 |
| Msa0012390 | Msa1452550 | 0.859392 | 4.270626e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012390 | MtrunA17_Chr1g0160911 | 91.253 | 846 | 64 | 3 | 32 | 873 | 1 | 840 | 0.0 | 1494 |
| Msa0012390 | MtrunA17_Chr3g0106931 | 32.620 | 187 | 118 | 4 | 153 | 337 | 580 | 760 | 6.67e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0012390 | AT1G23180.1 | 54.203 | 797 | 327 | 8 | 81 | 871 | 68 | 832 | 0.0 | 804 |
| Msa0012390 | AT1G23180.2 | 53.596 | 584 | 239 | 6 | 81 | 659 | 68 | 624 | 0.0 | 582 |
Find 185 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAATGTCTCACCAATTT+TGG | 0.103166 | 1_1:+18578810 | None:intergenic |
| CTTTAACTGCATCTCTTTAT+TGG | 0.150051 | 1_1:+18576051 | None:intergenic |
| TATAACAAACCTTCTAAATT+TGG | 0.153821 | 1_1:-18577430 | Msa0012390:CDS |
| CTTTGCTGCGGAGGGGAATA+TGG | 0.171865 | 1_1:+18575051 | None:intergenic |
| CCTTGGTCCTTATTTGTAAA+AGG | 0.188169 | 1_1:-18574519 | Msa0012390:three_prime_UTR |
| TGAACTCGAGATTCTATAAT+TGG | 0.192304 | 1_1:-18574408 | Msa0012390:three_prime_UTR |
| CAAAATCTCTTGAAAATTTC+GGG | 0.195077 | 1_1:-18575498 | Msa0012390:intron |
| GCAAAATCTCTTGAAAATTT+CGG | 0.195502 | 1_1:-18575499 | Msa0012390:CDS |
| CAATAAAGAGATGCAGTTAA+AGG | 0.219023 | 1_1:-18576050 | Msa0012390:intron |
| GGAAGCTGCAGCGGGTATTT+TGG | 0.228128 | 1_1:-18578889 | Msa0012390:CDS |
| GCAAAAGTCAATGCAATTAT+TGG | 0.230500 | 1_1:-18577352 | Msa0012390:CDS |
| TTGGTTATGTATCTTAGTTT+TGG | 0.237956 | 1_1:-18574472 | Msa0012390:three_prime_UTR |
| AGGGAGTTTGGAGGGTGATT+TGG | 0.246859 | 1_1:+18580267 | None:intergenic |
| ACGTGGGTTGTATGACTTAT+AGG | 0.253698 | 1_1:+18577501 | None:intergenic |
| GGCGCATCAGAAGTACTTAT+TGG | 0.256084 | 1_1:-18577409 | Msa0012390:CDS |
| AGCAGGTGTTATTCCAAAAT+TGG | 0.260256 | 1_1:-18578823 | Msa0012390:intron |
| TGATTCTATTAGTGGATTCT+TGG | 0.268837 | 1_1:-18574491 | Msa0012390:three_prime_UTR |
| GCCTTCTTAGATTCATTAAC+TGG | 0.272768 | 1_1:+18575936 | None:intergenic |
| TTTAACTGCATCTCTTTATT+GGG | 0.284738 | 1_1:+18576052 | None:intergenic |
| CGCATCTGTTCTTGAGTTTG+TGG | 0.296059 | 1_1:-18575592 | Msa0012390:CDS |
| TTAGTTCCTGTGCCATTAAT+AGG | 0.303101 | 1_1:-18577532 | Msa0012390:CDS |
| ATTTCTGTGGATATTGAAAA+TGG | 0.303359 | 1_1:-18575540 | Msa0012390:CDS |
| GGAAGGGGCTGTGTATTCTT+TGG | 0.309325 | 1_1:-18574811 | Msa0012390:CDS |
| CCTGGTAAAGAGAGGGAGTT+TGG | 0.312219 | 1_1:+18580255 | None:intergenic |
| GGTTGGAGGAAGAGGGTGTT+AGG | 0.316836 | 1_1:+18580365 | None:intergenic |
| CTTTCGATTTCTGTGCCATC+TGG | 0.319788 | 1_1:+18577457 | None:intergenic |
| ACTTCATTTGCTCAGGAGTT+TGG | 0.324562 | 1_1:-18574625 | Msa0012390:CDS |
| AACAAGCTATAATTACTCTT+TGG | 0.337922 | 1_1:-18579357 | Msa0012390:CDS |
| TAGGCTGCAGCACCTATTAA+TGG | 0.337954 | 1_1:+18577520 | None:intergenic |
| GTTAAACTAAGTTCTCTATC+TGG | 0.338525 | 1_1:-18575008 | Msa0012390:CDS |
| TATCTTCAATCGACCAATAT+AGG | 0.346902 | 1_1:-18579201 | Msa0012390:CDS |
| GCTGGCAGCGACGCAAGCTT+TGG | 0.349598 | 1_1:-18577041 | Msa0012390:CDS |
| GACAATATAATGCAATTTCC+TGG | 0.354985 | 1_1:-18579304 | Msa0012390:CDS |
| TGACAGAACAATTCTTCTTA+AGG | 0.360300 | 1_1:+18574671 | None:intergenic |
| AGGAAGAGGGTGTTAGGATT+GGG | 0.360457 | 1_1:+18580371 | None:intergenic |
| TCTGATGCGCCAAATTTAGA+AGG | 0.361169 | 1_1:+18577421 | None:intergenic |
| AGTGTTAAGGTTGGAGGAAG+AGG | 0.366186 | 1_1:+18580357 | None:intergenic |
| TGCGGAGCGTGCCAATGAAA+TGG | 0.370554 | 1_1:+18575087 | None:intergenic |
| TTCCCCTCCGCAGCAAAGAT+TGG | 0.377007 | 1_1:-18575046 | Msa0012390:CDS |
| AATGAATCTAAGAAGGCATT+TGG | 0.382340 | 1_1:-18575930 | Msa0012390:CDS |
| TCAATATCCACAGAAATAAT+CGG | 0.385085 | 1_1:+18575546 | None:intergenic |
| AATACTGTATAATCTTAGTA+TGG | 0.386852 | 1_1:-18574739 | Msa0012390:CDS |
| CCGAACTAGATTCTGCTCTA+AGG | 0.388734 | 1_1:+18579257 | None:intergenic |
| CTGCTACAGAATTCCTATAT+TGG | 0.391475 | 1_1:+18579188 | None:intergenic |
| GAGGAAGAGGGTGTTAGGAT+TGG | 0.392316 | 1_1:+18580370 | None:intergenic |
| TCCGACGAAGGGTCTGGAAC+TGG | 0.394882 | 1_1:-18580458 | Msa0012390:CDS |
| AAGCTTGCGTCGCTGCCAGC+TGG | 0.396449 | 1_1:+18577044 | None:intergenic |
| TCTAATGACTTTAGATGCTT+CGG | 0.398255 | 1_1:+18577627 | None:intergenic |
| TTCCACAGGAGCTATTATTT+CGG | 0.403093 | 1_1:-18574832 | Msa0012390:CDS |
| ATAAATCCCTCCCATTTCAT+TGG | 0.410195 | 1_1:-18575098 | Msa0012390:CDS |
| AGCTGGAGCTATTGCGGAAA+AGG | 0.415818 | 1_1:-18576209 | Msa0012390:intron |
| TTGATCTGTTCTACAAGTCT+TGG | 0.426493 | 1_1:+18574930 | None:intergenic |
| TTCATTCTCTTTAGAAGCAC+AGG | 0.426809 | 1_1:-18574904 | Msa0012390:CDS |
| AGTTGAGGGCAAAGTCTACT+TGG | 0.434761 | 1_1:-18574446 | Msa0012390:three_prime_UTR |
| CATTCAGCACTTCTAGCTGC+TGG | 0.435416 | 1_1:-18574705 | Msa0012390:CDS |
| CTCTTTAGAAGCACAGGAAA+AGG | 0.436036 | 1_1:-18574898 | Msa0012390:CDS |
| TATCAAGTGGATCATGATCT+AGG | 0.436132 | 1_1:+18579383 | None:intergenic |
| CCAAACTCCCTCTCTTTACC+AGG | 0.441801 | 1_1:-18580255 | Msa0012390:CDS |
| GGTGAATCATCTTCTGACTT+TGG | 0.442771 | 1_1:-18579442 | Msa0012390:CDS |
| TTACAGAATTCTTGTTATTG+AGG | 0.445107 | 1_1:-18577560 | Msa0012390:CDS |
| TTAGATGCTTCGGAGTCATA+TGG | 0.450507 | 1_1:+18577637 | None:intergenic |
| AGAACAATTCTTCTTAAGGC+TGG | 0.453913 | 1_1:+18574675 | None:intergenic |
| TCGGCTTGTGAGGCAGCTGC+AGG | 0.460226 | 1_1:-18579238 | Msa0012390:CDS |
| GCGGAGCGTGCCAATGAAAT+GGG | 0.461882 | 1_1:+18575088 | None:intergenic |
| TTAAATCGCTCAGACGTAGC+TGG | 0.461923 | 1_1:-18576226 | Msa0012390:CDS |
| TTCTTGTAAACTGGGTAAAG+AGG | 0.462516 | 1_1:+18575620 | None:intergenic |
| GCCTTGTTTGTTCGTATGCT+AGG | 0.463480 | 1_1:-18579406 | Msa0012390:CDS |
| AGGAATTCTGTAGCAGATAG+TGG | 0.465149 | 1_1:-18579181 | Msa0012390:CDS |
| ATTGCTGACACAATCTTCCT+TGG | 0.465619 | 1_1:-18579137 | Msa0012390:CDS |
| CAGGAAATAGATGAAGTAGA+AGG | 0.469292 | 1_1:-18579463 | Msa0012390:CDS |
| CTTTGGCAATATTCACTTGG+TGG | 0.469366 | 1_1:-18579340 | Msa0012390:CDS |
| CCTTCGTCGGAAAACAAGAT+AGG | 0.472598 | 1_1:+18580470 | None:intergenic |
| ACATATGCGTATTGCATTCA+AGG | 0.476617 | 1_1:-18577122 | Msa0012390:CDS |
| AAAGGGCACTTCATTTGCTC+AGG | 0.479741 | 1_1:-18574632 | Msa0012390:CDS |
| TCAAGGAGGCTGGTGCAGTT+AGG | 0.484639 | 1_1:-18577105 | Msa0012390:CDS |
| TCGTGTTGGTGCTATTGAAA+TGG | 0.486108 | 1_1:-18577305 | Msa0012390:CDS |
| GTGTTAAGGTTGGAGGAAGA+GGG | 0.486174 | 1_1:+18580358 | None:intergenic |
| CAATGATAATGCAGTCCAGC+TGG | 0.486189 | 1_1:-18577059 | Msa0012390:CDS |
| TCCCCTCCGCAGCAAAGATT+GGG | 0.486285 | 1_1:-18575045 | Msa0012390:CDS |
| CCTTAGAGCAGAATCTAGTT+CGG | 0.486396 | 1_1:-18579257 | Msa0012390:CDS |
| CGCGTCTGACACTCTTGCAT+TGG | 0.486741 | 1_1:-18577243 | Msa0012390:CDS |
| AGAATTCTTGTTATTGAGGA+AGG | 0.486981 | 1_1:-18577556 | Msa0012390:CDS |
| TGCTGCAGATATTGCAAGAC+CGG | 0.487218 | 1_1:+18575169 | None:intergenic |
| TATGTTTAGAAGAACATCCT+TGG | 0.490738 | 1_1:-18574536 | Msa0012390:three_prime_UTR |
| GCGCGAAATGAGAAGTGTTA+AGG | 0.491645 | 1_1:+18580344 | None:intergenic |
| GCATTTGGTGGAGCCGATGA+TGG | 0.492074 | 1_1:-18575915 | Msa0012390:CDS |
| TTTGCTGCGGAGGGGAATAT+GGG | 0.494178 | 1_1:+18575052 | None:intergenic |
| ATTGAAGAAGGTAGTGAAAG+AGG | 0.498186 | 1_1:-18574780 | Msa0012390:CDS |
| TACCCAATCTTTGCTGCGGA+GGG | 0.498761 | 1_1:+18575043 | None:intergenic |
| TACCGGTGTGAGTCGATGAC+TGG | 0.501329 | 1_1:-18574285 | Msa0012390:three_prime_UTR |
| TTGGAAACATGACGAGTCCA+TGG | 0.503224 | 1_1:-18574606 | Msa0012390:exon |
| CGTATTGCATTCAAGGAGGC+TGG | 0.506096 | 1_1:-18577115 | Msa0012390:CDS |
| CGAGGAAGAGAGAGTGACTC+TGG | 0.507018 | 1_1:+18580297 | None:intergenic |
| AGCATCTAAAGTCATTAGAA+AGG | 0.509035 | 1_1:-18577623 | Msa0012390:CDS |
| TAATTCCTTTGATCCATCAT+CGG | 0.513509 | 1_1:+18575902 | None:intergenic |
| ACTCGTAGTTGCAGCAATAA+CGG | 0.516523 | 1_1:-18580229 | Msa0012390:CDS |
| CAACAATTCCTTGTTCGTGT+TGG | 0.517289 | 1_1:-18577319 | Msa0012390:CDS |
| ATGAGAAGTGTTAAGGTTGG+AGG | 0.518276 | 1_1:+18580351 | None:intergenic |
| ACAATCTTCCTTGGCTTCTG+AGG | 0.520554 | 1_1:-18579128 | Msa0012390:intron |
| CTTTCATATCCTCATCATCA+AGG | 0.521881 | 1_1:+18578916 | None:intergenic |
| CTACCCAATCTTTGCTGCGG+AGG | 0.523971 | 1_1:+18575042 | None:intergenic |
| TGTTTAAAGATTCCTTCCCA+TGG | 0.524675 | 1_1:+18574589 | None:intergenic |
| AGTGTAACTTCTGCGTTGAT+CGG | 0.525464 | 1_1:+18574966 | None:intergenic |
| CCATGATGTCATGGTTAACA+TGG | 0.527085 | 1_1:+18578850 | None:intergenic |
| GAAATAATCGGACTCAGTGT+TGG | 0.530686 | 1_1:+18575558 | None:intergenic |
| ACTCTTTGGCAATATTCACT+TGG | 0.531474 | 1_1:-18579343 | Msa0012390:CDS |
| CATGACATCATGGTTGAAGC+AGG | 0.531883 | 1_1:-18578840 | Msa0012390:CDS |
| ATTCAGCACTTCTAGCTGCT+GGG | 0.532272 | 1_1:-18574704 | Msa0012390:CDS |
| GAACAATTCTTCTTAAGGCT+GGG | 0.533123 | 1_1:+18574676 | None:intergenic |
| TTGGTGAAGCTGATTGAAGA+AGG | 0.533346 | 1_1:-18574792 | Msa0012390:CDS |
| ATAGCTTGTTCTCTATCAAG+TGG | 0.535682 | 1_1:+18579370 | None:intergenic |
| CACCCTCGGTTTCAATCACT+CGG | 0.536142 | 1_1:+18576272 | None:intergenic |
| ACACTCTTGCATTGGATCGA+CGG | 0.536563 | 1_1:-18577235 | Msa0012390:CDS |
| ACAGGAGCTATTATTTCGGA+AGG | 0.538014 | 1_1:-18574828 | Msa0012390:CDS |
| GCTGCAACTACGAGTGAACC+TGG | 0.538844 | 1_1:+18580237 | None:intergenic |
| CTTTGGAAAAGCTGTCTGCT+AGG | 0.538845 | 1_1:-18577024 | Msa0012390:intron |
| AGGAGCTATTATTTCGGAAG+GGG | 0.539631 | 1_1:-18574826 | Msa0012390:CDS |
| ACCAGTTAATGAATCTAAGA+AGG | 0.539869 | 1_1:-18575937 | Msa0012390:CDS |
| GTGCAGTTAGGCATTTAGTA+CGG | 0.544923 | 1_1:-18577093 | Msa0012390:CDS |
| AGCAAGTTATATCTTTGTAC+CGG | 0.545376 | 1_1:-18574302 | Msa0012390:three_prime_UTR |
| GAATCTAAGAAGGCATTTGG+TGG | 0.547826 | 1_1:-18575927 | Msa0012390:CDS |
| TCTGTGCCATCTGGAAATGC+AGG | 0.548785 | 1_1:+18577466 | None:intergenic |
| CTTAGTAGAATAGTATCTGA+AGG | 0.555239 | 1_1:-18574864 | Msa0012390:CDS |
| TTCCTATACCTCAGAAGCCA+AGG | 0.555612 | 1_1:+18579120 | None:intergenic |
| GAAGGGGTGGTAGATTCCAC+AGG | 0.559231 | 1_1:-18574846 | Msa0012390:CDS |
| AGAATCTAGTTCGGCTTGTG+AGG | 0.559361 | 1_1:-18579248 | Msa0012390:CDS |
| TGACTTTGGTGATAGCTATG+TGG | 0.570542 | 1_1:-18579428 | Msa0012390:CDS |
| ATAGAGAACTTAGTTTAACT+AGG | 0.573283 | 1_1:+18575012 | None:intergenic |
| TAGAATAGTATCTGAAGGGG+TGG | 0.574461 | 1_1:-18574859 | Msa0012390:CDS |
| CGATTTAAAATACTAACTAA+AGG | 0.575009 | 1_1:+18576241 | None:intergenic |
| ACTGAGTCCGATTATTTCTG+TGG | 0.577062 | 1_1:-18575553 | Msa0012390:CDS |
| ATATGCTATTGAACTTGAAG+AGG | 0.580089 | 1_1:-18575192 | Msa0012390:CDS |
| AGACGTAGCTGGAGCTATTG+CGG | 0.580587 | 1_1:-18576215 | Msa0012390:CDS |
| GGGTGATTTGGAAGAGTACG+AGG | 0.582661 | 1_1:+18580279 | None:intergenic |
| CAGGAGCTATTATTTCGGAA+GGG | 0.582745 | 1_1:-18574827 | Msa0012390:CDS |
| CCATGTTAACCATGACATCA+TGG | 0.583441 | 1_1:-18578850 | Msa0012390:CDS |
| CAGCAGCTAGAAGTGCTGAA+TGG | 0.585525 | 1_1:+18574706 | None:intergenic |
| GCTATTGAACTTGAAGAGGC+CGG | 0.585806 | 1_1:-18575188 | Msa0012390:CDS |
| TTAGTAGAATAGTATCTGAA+GGG | 0.587830 | 1_1:-18574863 | Msa0012390:CDS |
| CTGCTTCAACCATGATGTCA+TGG | 0.590843 | 1_1:+18578841 | None:intergenic |
| GGTAAAGAGAGGGAGTTTGG+AGG | 0.591999 | 1_1:+18580258 | None:intergenic |
| CAATAGCACCAACACGAACA+AGG | 0.593972 | 1_1:+18577311 | None:intergenic |
| GCAGCACCTATTAATGGCAC+AGG | 0.594699 | 1_1:+18577526 | None:intergenic |
| AAAGTGAAGGAAGCTGCAGC+GGG | 0.596369 | 1_1:-18578897 | Msa0012390:CDS |
| TATGAAGTACCTTGATGATG+AGG | 0.596634 | 1_1:-18578925 | Msa0012390:CDS |
| GAAAGTGAAGGAAGCTGCAG+CGG | 0.599166 | 1_1:-18578898 | Msa0012390:CDS |
| TAAAGGAGCTAAACCACCCT+CGG | 0.600173 | 1_1:+18576258 | None:intergenic |
| TGCATTGCTAGAACTTGTGA+AGG | 0.603172 | 1_1:-18577590 | Msa0012390:CDS |
| TTCCGAAATAATAGCTCCTG+TGG | 0.603640 | 1_1:+18574830 | None:intergenic |
| GTAAAGAGAGGGAGTTTGGA+GGG | 0.604692 | 1_1:+18580259 | None:intergenic |
| TGGAGCCGATGATGGATCAA+AGG | 0.607714 | 1_1:-18575907 | Msa0012390:CDS |
| TTCAGCACTTCTAGCTGCTG+GGG | 0.609035 | 1_1:-18574703 | Msa0012390:CDS |
| AACTAGATTCTGCTCTAAGG+AGG | 0.611088 | 1_1:+18579260 | None:intergenic |
| TGGAAACATGACGAGTCCAT+GGG | 0.614382 | 1_1:-18574605 | Msa0012390:exon |
| GAGCGTGCCAATGAAATGGG+AGG | 0.615707 | 1_1:+18575091 | None:intergenic |
| ACCCAATCTTTGCTGCGGAG+GGG | 0.616154 | 1_1:+18575044 | None:intergenic |
| CGAGTGATTGAAACCGAGGG+TGG | 0.618745 | 1_1:-18576271 | Msa0012390:CDS |
| TGAAGTGCCCTTTGCCACTG+TGG | 0.620491 | 1_1:+18574642 | None:intergenic |
| TCCAGTTCCAGACCCTTCGT+CGG | 0.620804 | 1_1:+18580457 | None:intergenic |
| GTTGAGGGCAAAGTCTACTT+GGG | 0.620842 | 1_1:-18574445 | Msa0012390:three_prime_UTR |
| GAAATGAGAAGTGTTAAGGT+TGG | 0.621861 | 1_1:+18580348 | None:intergenic |
| AAGTCATTAGAAAGGAAGCA+AGG | 0.621933 | 1_1:-18577615 | Msa0012390:CDS |
| CGAGTGAACCTGGTAAAGAG+AGG | 0.623321 | 1_1:+18580247 | None:intergenic |
| GCCTAGCATACGAACAAACA+AGG | 0.626275 | 1_1:+18579405 | None:intergenic |
| AACCAGTCATCGACTCACAC+CGG | 0.627061 | 1_1:+18574283 | None:intergenic |
| TTGAAGATAGTGATTGCAGA+AGG | 0.627279 | 1_1:+18579215 | None:intergenic |
| TGCCGAGTGATTGAAACCGA+GGG | 0.634638 | 1_1:-18576274 | Msa0012390:CDS |
| GAGGCGCCTGCATTTCCAGA+TGG | 0.635163 | 1_1:-18577472 | Msa0012390:CDS |
| AGCGTGCCAATGAAATGGGA+GGG | 0.637506 | 1_1:+18575092 | None:intergenic |
| CAGATGGCACAGAAATCGAA+AGG | 0.639899 | 1_1:-18577456 | Msa0012390:CDS |
| CAGCTACCCAATCTTTGCTG+CGG | 0.649246 | 1_1:+18575039 | None:intergenic |
| CACAAACTCAAGAACAGATG+CGG | 0.650980 | 1_1:+18575593 | None:intergenic |
| GAGTGAACCTGGTAAAGAGA+GGG | 0.654437 | 1_1:+18580248 | None:intergenic |
| TAGTAGAATAGTATCTGAAG+GGG | 0.655599 | 1_1:-18574862 | Msa0012390:CDS |
| AACATGACGAGTCCATGGGA+AGG | 0.664260 | 1_1:-18574601 | Msa0012390:exon |
| CAATGCAAGAGTGTCAGACG+CGG | 0.664864 | 1_1:+18577244 | None:intergenic |
| TTGCCGAGTGATTGAAACCG+AGG | 0.671670 | 1_1:-18576275 | Msa0012390:CDS |
| TGATGAGGATATGAAAGTGA+AGG | 0.675412 | 1_1:-18578910 | Msa0012390:CDS |
| ACAACAAGATTAATACAACC+AGG | 0.686889 | 1_1:+18579286 | None:intergenic |
| CAGGCGCCTCGTATAAACGT+GGG | 0.689019 | 1_1:+18577485 | None:intergenic |
| GCAGGCGCCTCGTATAAACG+TGG | 0.692382 | 1_1:+18577484 | None:intergenic |
| AGGACTTCAAAATCTCCACA+AGG | 0.708917 | 1_1:+18575640 | None:intergenic |
| ATACAACCCACGTTTATACG+AGG | 0.715558 | 1_1:-18577491 | Msa0012390:CDS |
| AGCAGAGACAGAATCTGACG+TGG | 0.737628 | 1_1:-18575234 | Msa0012390:CDS |
| TATGCGTATTGCATTCAAGG+AGG | 0.753564 | 1_1:-18577119 | Msa0012390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATTTCATATAAATAA+AGG | - | chr1_1:18576788-18576807 | Msa0012390:intron | 10.0% |
| !!! | GTTCAAAATATATTTTTTTA+GGG | + | chr1_1:18576840-18576859 | None:intergenic | 10.0% |
| !!! | AGTTCAAAATATATTTTTTT+AGG | + | chr1_1:18576841-18576860 | None:intergenic | 10.0% |
| !! | AAAAAAATGAAATTCTAAAT+AGG | + | chr1_1:18578758-18578777 | None:intergenic | 10.0% |
| !!! | TTGTCTAAAATATTATAATG+TGG | - | chr1_1:18575141-18575160 | Msa0012390:CDS | 15.0% |
| !! | TAATTAGTATACAAAAACTT+TGG | - | chr1_1:18575666-18575685 | Msa0012390:CDS | 15.0% |
| !! | TATATCAAGAATTATAAAAC+TGG | + | chr1_1:18576010-18576029 | None:intergenic | 15.0% |
| !!! | AAATTATATGGTTCTAATTA+GGG | - | chr1_1:18576414-18576433 | Msa0012390:intron | 15.0% |
| !! | AATTTATATTACAACAATAG+AGG | - | chr1_1:18577804-18577823 | Msa0012390:intron | 15.0% |
| !!! | ACTTAACAAGATTTTAATTT+TGG | - | chr1_1:18578639-18578658 | Msa0012390:intron | 15.0% |
| !! | TGTGAAATTAAGAAAATGAA+GGG | + | chr1_1:18574610-18574629 | None:intergenic | 20.0% |
| !! | CATATTATGATTTACAATAG+TGG | + | chr1_1:18574766-18574785 | None:intergenic | 20.0% |
| !! | GTAAATCATAATATGTTCAT+TGG | - | chr1_1:18574771-18574790 | Msa0012390:CDS | 20.0% |
| !!! | GAAATTATATGGTTCTAATT+AGG | - | chr1_1:18576413-18576432 | Msa0012390:intron | 20.0% |
| !!! | TAAATTATGTATGCTTTGAA+TGG | - | chr1_1:18576648-18576667 | Msa0012390:intron | 20.0% |
| !! | AAGAGACAAATATAAACTTA+GGG | + | chr1_1:18576763-18576782 | None:intergenic | 20.0% |
| !! | AAAGAGACAAATATAAACTT+AGG | + | chr1_1:18576764-18576783 | None:intergenic | 20.0% |
| !! | TATAACAAACCTTCTAAATT+TGG | - | chr1_1:18577332-18577351 | Msa0012390:CDS | 20.0% |
| !!! | ATGAAAGAAAGTACTTTATA+AGG | + | chr1_1:18577858-18577877 | None:intergenic | 20.0% |
| !! | CATTGTAAACAGAAAAATTA+AGG | - | chr1_1:18577875-18577894 | Msa0012390:intron | 20.0% |
| !! | AGAAACAATTGTACATATAA+CGG | - | chr1_1:18578146-18578165 | Msa0012390:intron | 20.0% |
| !! | AAGGGATATTATACAAATTA+AGG | - | chr1_1:18578172-18578191 | Msa0012390:intron | 20.0% |
| !!! | AGTTTGTATTTTCTGTTATA+TGG | - | chr1_1:18578254-18578273 | Msa0012390:intron | 20.0% |
| !! | AATAAATGAAAAGAAGATAG+AGG | - | chr1_1:18578286-18578305 | Msa0012390:intron | 20.0% |
| !! | ATAAATGAAAAGAAGATAGA+GGG | - | chr1_1:18578287-18578306 | Msa0012390:intron | 20.0% |
| !!! | CGATTTAAAATACTAACTAA+AGG | + | chr1_1:18578524-18578543 | None:intergenic | 20.0% |
| !! | TCTTATATGTTAACTAATTC+TGG | - | chr1_1:18578591-18578610 | Msa0012390:intron | 20.0% |
| !! | TAAACATTGTAAAACGAAAA+TGG | + | chr1_1:18579325-18579344 | None:intergenic | 20.0% |
| !! | AATACTGTATAATCTTAGTA+TGG | - | chr1_1:18580023-18580042 | Msa0012390:intron | 20.0% |
| !!! | CAAAATACCTTTTACAAATA+AGG | + | chr1_1:18580253-18580272 | None:intergenic | 20.0% |
| ! | GTGTGAAATTAAGAAAATGA+AGG | + | chr1_1:18574611-18574630 | None:intergenic | 25.0% |
| ! | GAGAGAAGAACTTAAATAAA+CGG | - | chr1_1:18574956-18574975 | Msa0012390:CDS | 25.0% |
| ! | AACAAGCTATAATTACTCTT+TGG | - | chr1_1:18575405-18575424 | Msa0012390:intron | 25.0% |
| ! | GTGTAGAAAATGAGAATATT+TGG | - | chr1_1:18575707-18575726 | Msa0012390:intron | 25.0% |
| ! | TTAAACTACTATACATAAGC+AGG | + | chr1_1:18576230-18576249 | None:intergenic | 25.0% |
| ! | GGAACGTATCAAAATAAATT+TGG | + | chr1_1:18576288-18576307 | None:intergenic | 25.0% |
| !!! | CAGATTATTTTAAAGTATCG+TGG | + | chr1_1:18576554-18576573 | None:intergenic | 25.0% |
| ! | AACATTTCTGTTGAGATTTA+GGG | + | chr1_1:18576902-18576921 | None:intergenic | 25.0% |
| ! | TAACATTTCTGTTGAGATTT+AGG | + | chr1_1:18576903-18576922 | None:intergenic | 25.0% |
| !!! | CAGAATGTCATTATTTCTAA+TGG | + | chr1_1:18576964-18576983 | None:intergenic | 25.0% |
| !! | GTTTACTGATATTTTTCCTT+TGG | - | chr1_1:18576986-18577005 | Msa0012390:intron | 25.0% |
| ! | TCAGTAAAATTCAATACCAA+AGG | + | chr1_1:18577005-18577024 | None:intergenic | 25.0% |
| ! | ATTCTCATATTTCTTACCAA+AGG | - | chr1_1:18577032-18577051 | Msa0012390:CDS | 25.0% |
| !! | CTGAGTTTTTATCTTAATTC+AGG | - | chr1_1:18577091-18577110 | Msa0012390:CDS | 25.0% |
| !!! | TTACAGAATTCTTGTTATTG+AGG | - | chr1_1:18577202-18577221 | Msa0012390:CDS | 25.0% |
| !! | TACAACAATAGAGGATATTT+TGG | - | chr1_1:18577813-18577832 | Msa0012390:intron | 25.0% |
| ! | ATAAGAAATTATCAGTTGAC+AGG | - | chr1_1:18577949-18577968 | Msa0012390:intron | 25.0% |
| ! | TAAGAAATTATCAGTTGACA+GGG | - | chr1_1:18577950-18577969 | Msa0012390:intron | 25.0% |
| !!! | TTTCCTTATTTTGTGGTTTT+AGG | + | chr1_1:18578103-18578122 | None:intergenic | 25.0% |
| !! | ATTGTACATATAACGGAAAA+AGG | - | chr1_1:18578153-18578172 | Msa0012390:intron | 25.0% |
| !! | TTGTACATATAACGGAAAAA+GGG | - | chr1_1:18578154-18578173 | Msa0012390:intron | 25.0% |
| ! | GAAAATACAAACTTACCATA+GGG | + | chr1_1:18578247-18578266 | None:intergenic | 25.0% |
| ! | AGAAAATACAAACTTACCAT+AGG | + | chr1_1:18578248-18578267 | None:intergenic | 25.0% |
| ! | ATGTTGTGGAAAATGAAATA+AGG | - | chr1_1:18578336-18578355 | Msa0012390:intron | 25.0% |
| ! | GCAAAAGCTAAAATATAAAC+TGG | - | chr1_1:18578613-18578632 | Msa0012390:intron | 25.0% |
| ! | TTTAACTGCATCTCTTTATT+GGG | + | chr1_1:18578713-18578732 | None:intergenic | 25.0% |
| !!! | GATTCTTTTCAGTTTTATGA+TGG | - | chr1_1:18578802-18578821 | Msa0012390:intron | 25.0% |
| ! | TTCATCTATATACAGTTACA+AGG | - | chr1_1:18578973-18578992 | Msa0012390:CDS | 25.0% |
| ! | CTGAAAAGTTTAGTTAACAT+TGG | - | chr1_1:18579039-18579058 | Msa0012390:intron | 25.0% |
| ! | TTTCTCTTCAATAAAACATC+AGG | - | chr1_1:18579067-18579086 | Msa0012390:intron | 25.0% |
| ! | TCAATATCCACAGAAATAAT+CGG | + | chr1_1:18579219-18579238 | None:intergenic | 25.0% |
| ! | ATTTCTGTGGATATTGAAAA+TGG | - | chr1_1:18579222-18579241 | Msa0012390:CDS | 25.0% |
| ! | GCAAAATCTCTTGAAAATTT+CGG | - | chr1_1:18579263-18579282 | Msa0012390:CDS | 25.0% |
| ! | CAAAATCTCTTGAAAATTTC+GGG | - | chr1_1:18579264-18579283 | Msa0012390:CDS | 25.0% |
| ! | AAATCACACTCAAATTGAAA+GGG | + | chr1_1:18579389-18579408 | None:intergenic | 25.0% |
| ! | AAAATCACACTCAAATTGAA+AGG | + | chr1_1:18579390-18579409 | None:intergenic | 25.0% |
| ! | ATAGAGAACTTAGTTTAACT+AGG | + | chr1_1:18579753-18579772 | None:intergenic | 25.0% |
| ! | TTAGTAGAATAGTATCTGAA+GGG | - | chr1_1:18579899-18579918 | Msa0012390:intron | 25.0% |
| !!! | AGGTATTTTGATTCTATTAG+TGG | - | chr1_1:18580263-18580282 | Msa0012390:CDS | 25.0% |
| !! | TTGGTTATGTATCTTAGTTT+TGG | - | chr1_1:18580290-18580309 | Msa0012390:CDS | 25.0% |
| !!! | TGGTTATGTATCTTAGTTTT+GGG | - | chr1_1:18580291-18580310 | Msa0012390:CDS | 25.0% |
| ! | ATTGTTGTTGTTGTTGTTGA+GGG | + | chr1_1:18574443-18574462 | None:intergenic | 30.0% |
| ! | TATTGTTGTTGTTGTTGTTG+AGG | + | chr1_1:18574444-18574463 | None:intergenic | 30.0% |
| AGCGTTATGTTATGTTTAAC+TGG | - | chr1_1:18574836-18574855 | Msa0012390:CDS | 30.0% | |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr1_1:18575028-18575047 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTTAGCCTCTTTG+TGG | - | chr1_1:18575214-18575233 | Msa0012390:CDS | 30.0% |
| ! | AATGCTTCAATTTTGCTTTC+AGG | - | chr1_1:18575280-18575299 | Msa0012390:intron | 30.0% |
| GACAATATAATGCAATTTCC+TGG | - | chr1_1:18575458-18575477 | Msa0012390:intron | 30.0% | |
| ACAACAAGATTAATACAACC+AGG | + | chr1_1:18575479-18575498 | None:intergenic | 30.0% | |
| TATCTTCAATCGACCAATAT+AGG | - | chr1_1:18575561-18575580 | Msa0012390:CDS | 30.0% | |
| !!! | TATTTGGAACTCTTTTTTGC+AGG | - | chr1_1:18575723-18575742 | Msa0012390:intron | 30.0% |
| ! | TTTCAATGTCTCACCAATTT+TGG | + | chr1_1:18575955-18575974 | None:intergenic | 30.0% |
| AGGTGCAAACACATAAATTA+TGG | + | chr1_1:18576078-18576097 | None:intergenic | 30.0% | |
| TTTGATGTTGTATAAAAGCC+TGG | - | chr1_1:18576130-18576149 | Msa0012390:intron | 30.0% | |
| GAGGCAATGTTGAAATTATA+TGG | - | chr1_1:18576402-18576421 | Msa0012390:intron | 30.0% | |
| !! | TATATGGTTCTAATTAGGGA+AGG | - | chr1_1:18576418-18576437 | Msa0012390:intron | 30.0% |
| AGGAGGAAAAAAGATAGTTA+AGG | - | chr1_1:18576438-18576457 | Msa0012390:intron | 30.0% | |
| ! | GTTAAGGCTAATTTTGTGTA+AGG | - | chr1_1:18576454-18576473 | Msa0012390:intron | 30.0% |
| !! | ATTTTTAAGCTTGTGCAGTT+GGG | + | chr1_1:18576500-18576519 | None:intergenic | 30.0% |
| ! | AGTATCGTGGATAATCTTTT+AGG | + | chr1_1:18576541-18576560 | None:intergenic | 30.0% |
| ATCGATACTCTAATGAAGTT+TGG | - | chr1_1:18576590-18576609 | Msa0012390:intron | 30.0% | |
| ! | ATTATGTATGCTTTGAATGG+AGG | - | chr1_1:18576651-18576670 | Msa0012390:intron | 30.0% |
| ! | TTATGTATGCTTTGAATGGA+GGG | - | chr1_1:18576652-18576671 | Msa0012390:intron | 30.0% |
| TTTCCATTCAACTTATCAGA+AGG | + | chr1_1:18576935-18576954 | None:intergenic | 30.0% | |
| ! | TCTGATAAGTTGAATGGAAA+AGG | - | chr1_1:18576935-18576954 | Msa0012390:intron | 30.0% |
| TCTAATGACTTTAGATGCTT+CGG | + | chr1_1:18577138-18577157 | None:intergenic | 30.0% | |
| ! | AGCATCTAAAGTCATTAGAA+AGG | - | chr1_1:18577139-18577158 | Msa0012390:CDS | 30.0% |
| !! | AGAATTCTTGTTATTGAGGA+AGG | - | chr1_1:18577206-18577225 | Msa0012390:CDS | 30.0% |
| GCAAAAGTCAATGCAATTAT+TGG | - | chr1_1:18577410-18577429 | Msa0012390:CDS | 30.0% | |
| TGTCCTAAAACCACAAAATA+AGG | - | chr1_1:18578097-18578116 | Msa0012390:intron | 30.0% | |
| !!! | GGATTCATTTCCTTATTTTG+TGG | + | chr1_1:18578110-18578129 | None:intergenic | 30.0% |
| TGAATCCTATTCCAGAATTA+AGG | - | chr1_1:18578123-18578142 | Msa0012390:intron | 30.0% | |
| !! | TTTCTCCTTAATTCTGGAAT+AGG | + | chr1_1:18578131-18578150 | None:intergenic | 30.0% |
| ! | CAATTGTTTCTCCTTAATTC+TGG | + | chr1_1:18578137-18578156 | None:intergenic | 30.0% |
| AGTATCATTTAGATGGTGAA+AGG | - | chr1_1:18578217-18578236 | Msa0012390:intron | 30.0% | |
| TGTGGAAAATGAAATAAGGA+TGG | - | chr1_1:18578340-18578359 | Msa0012390:intron | 30.0% | |
| CTTTAACTGCATCTCTTTAT+TGG | + | chr1_1:18578714-18578733 | None:intergenic | 30.0% | |
| CAATAAAGAGATGCAGTTAA+AGG | - | chr1_1:18578712-18578731 | Msa0012390:intron | 30.0% | |
| ACCAGTTAATGAATCTAAGA+AGG | - | chr1_1:18578825-18578844 | Msa0012390:CDS | 30.0% | |
| !! | AATGAATCTAAGAAGGCATT+TGG | - | chr1_1:18578832-18578851 | Msa0012390:CDS | 30.0% |
| TAATTCCTTTGATCCATCAT+CGG | + | chr1_1:18578863-18578882 | None:intergenic | 30.0% | |
| !! | ATATCCTTTTAGCTAACCTT+GGG | + | chr1_1:18578918-18578937 | None:intergenic | 30.0% |
| TAAAAGGATATGAACCACAA+GGG | - | chr1_1:18578927-18578946 | Msa0012390:CDS | 30.0% | |
| AATTTCTGCTCTTTAATGTG+TGG | - | chr1_1:18579292-18579311 | Msa0012390:CDS | 30.0% | |
| ! | TGATTTTTGCTAGTGGAAAA+AGG | - | chr1_1:18579403-18579422 | Msa0012390:CDS | 30.0% |
| ATATGCTATTGAACTTGAAG+AGG | - | chr1_1:18579570-18579589 | Msa0012390:intron | 30.0% | |
| GTTAAACTAAGTTCTCTATC+TGG | - | chr1_1:18579754-18579773 | Msa0012390:intron | 30.0% | |
| CTTAGTAGAATAGTATCTGA+AGG | - | chr1_1:18579898-18579917 | Msa0012390:intron | 30.0% | |
| TAGTAGAATAGTATCTGAAG+GGG | - | chr1_1:18579900-18579919 | Msa0012390:intron | 30.0% | |
| TGACAGAACAATTCTTCTTA+AGG | + | chr1_1:18580094-18580113 | None:intergenic | 30.0% | |
| TATGTTTAGAAGAACATCCT+TGG | - | chr1_1:18580226-18580245 | Msa0012390:CDS | 30.0% | |
| !! | TGATTCTATTAGTGGATTCT+TGG | - | chr1_1:18580271-18580290 | Msa0012390:CDS | 30.0% |
| TGAACTCGAGATTCTATAAT+TGG | - | chr1_1:18580354-18580373 | Msa0012390:CDS | 30.0% | |
| AGCAAGTTATATCTTTGTAC+CGG | - | chr1_1:18580460-18580479 | Msa0012390:CDS | 30.0% | |
| !! | GAAATGAGAAGTGTTAAGGT+TGG | + | chr1_1:18574417-18574436 | None:intergenic | 35.0% |
| AGGGTTGAGATTAAAACTCA+CGG | + | chr1_1:18574591-18574610 | None:intergenic | 35.0% | |
| AGAAGTGATTCAGTTATGGA+AGG | + | chr1_1:18574675-18574694 | None:intergenic | 35.0% | |
| CAAGAGAAGTGATTCAGTTA+TGG | + | chr1_1:18574679-18574698 | None:intergenic | 35.0% | |
| ! | CTGGATTCAGTTCTAATGTA+TGG | - | chr1_1:18574855-18574874 | Msa0012390:CDS | 35.0% |
| ACAGATAAGTCAATCCAAAC+AGG | + | chr1_1:18574900-18574919 | None:intergenic | 35.0% | |
| CAGGAAATAGATGAAGTAGA+AGG | - | chr1_1:18575299-18575318 | Msa0012390:intron | 35.0% | |
| TATCAAGTGGATCATGATCT+AGG | + | chr1_1:18575382-18575401 | None:intergenic | 35.0% | |
| !! | ATAGCTTGTTCTCTATCAAG+TGG | + | chr1_1:18575395-18575414 | None:intergenic | 35.0% |
| ACTCTTTGGCAATATTCACT+TGG | - | chr1_1:18575419-18575438 | Msa0012390:intron | 35.0% | |
| TTGAAGATAGTGATTGCAGA+AGG | + | chr1_1:18575550-18575569 | None:intergenic | 35.0% | |
| CTGCTACAGAATTCCTATAT+TGG | + | chr1_1:18575577-18575596 | None:intergenic | 35.0% | |
| !!! | GAACTCTTTTTTGCAGGTAA+AGG | - | chr1_1:18575729-18575748 | Msa0012390:intron | 35.0% |
| ! | CGCTCTTTGCAATTTTTACT+CGG | + | chr1_1:18575801-18575820 | None:intergenic | 35.0% |
| !! | TATGAAGTACCTTGATGATG+AGG | - | chr1_1:18575837-18575856 | Msa0012390:intron | 35.0% |
| CTTTCATATCCTCATCATCA+AGG | + | chr1_1:18575849-18575868 | None:intergenic | 35.0% | |
| TGATGAGGATATGAAAGTGA+AGG | - | chr1_1:18575852-18575871 | Msa0012390:intron | 35.0% | |
| !! | AGCAGGTGTTATTCCAAAAT+TGG | - | chr1_1:18575939-18575958 | Msa0012390:CDS | 35.0% |
| ATTGGTGAGACATTGAAAGA+TGG | - | chr1_1:18575957-18575976 | Msa0012390:intron | 35.0% | |
| CACCTAAAACATTATGCTCT+CGG | - | chr1_1:18576093-18576112 | Msa0012390:intron | 35.0% | |
| ACCTAAAACATTATGCTCTC+GGG | - | chr1_1:18576094-18576113 | Msa0012390:intron | 35.0% | |
| !!! | GGAACTTGGCAGTTTTTTTT+TGG | - | chr1_1:18576171-18576190 | Msa0012390:intron | 35.0% |
| !!! | TTGGCAGTTTTTTTTTGGAG+AGG | - | chr1_1:18576176-18576195 | Msa0012390:intron | 35.0% |
| !!! | TGGCAGTTTTTTTTTGGAGA+GGG | - | chr1_1:18576177-18576196 | Msa0012390:intron | 35.0% |
| ACATAAGCTACCTTCTATAG+TGG | - | chr1_1:18576204-18576223 | Msa0012390:intron | 35.0% | |
| ACGTTCCTATAGAAAATACG+AGG | - | chr1_1:18576301-18576320 | Msa0012390:intron | 35.0% | |
| ! | TGGATCCTCGTATTTTCTAT+AGG | + | chr1_1:18576309-18576328 | None:intergenic | 35.0% |
| GAATCATGAGTCAATCTTCT+TGG | + | chr1_1:18576329-18576348 | None:intergenic | 35.0% | |
| ACTCATGATTCTATGCAAGT+TGG | - | chr1_1:18576338-18576357 | Msa0012390:intron | 35.0% | |
| GAGTCTATTTGGTCTATTCA+TGG | - | chr1_1:18576364-18576383 | Msa0012390:intron | 35.0% | |
| !! | GATTTTTAAGCTTGTGCAGT+TGG | + | chr1_1:18576501-18576520 | None:intergenic | 35.0% |
| ! | TATGTATGCTTTGAATGGAG+GGG | - | chr1_1:18576653-18576672 | Msa0012390:intron | 35.0% |
| TTCTGTTGAGATTTAGGGAT+CGG | + | chr1_1:18576897-18576916 | None:intergenic | 35.0% | |
| ! | TGTTCTAAGCATCAAGAGAA+AGG | + | chr1_1:18577059-18577078 | None:intergenic | 35.0% |
| AAGTCATTAGAAAGGAAGCA+AGG | - | chr1_1:18577147-18577166 | Msa0012390:CDS | 35.0% | |
| ! | TTAGTTCCTGTGCCATTAAT+AGG | - | chr1_1:18577230-18577249 | Msa0012390:CDS | 35.0% |
| ACATATGCGTATTGCATTCA+AGG | - | chr1_1:18577640-18577659 | Msa0012390:CDS | 35.0% | |
| ! | ATCCGATTGATAACCATTCT+AGG | - | chr1_1:18578056-18578075 | Msa0012390:intron | 35.0% |
| ! | TCCGATTGATAACCATTCTA+GGG | - | chr1_1:18578057-18578076 | Msa0012390:intron | 35.0% |
| ACCCTAGAATGGTTATCAAT+CGG | + | chr1_1:18578061-18578080 | None:intergenic | 35.0% | |
| !! | TGATAACCATTCTAGGGTTA+AGG | - | chr1_1:18578063-18578082 | Msa0012390:intron | 35.0% |
| !! | GATAACCATTCTAGGGTTAA+GGG | - | chr1_1:18578064-18578083 | Msa0012390:intron | 35.0% |
| TATTTCCCTTAACCCTAGAA+TGG | + | chr1_1:18578072-18578091 | None:intergenic | 35.0% | |
| GTACAGCAGTATCATTTAGA+TGG | - | chr1_1:18578210-18578229 | Msa0012390:intron | 35.0% | |
| AAGCCAACCATTGCATAATA+CGG | - | chr1_1:18578310-18578329 | Msa0012390:intron | 35.0% | |
| ACATCATCCGTATTATGCAA+TGG | + | chr1_1:18578320-18578339 | None:intergenic | 35.0% | |
| GCCTTCTTAGATTCATTAAC+TGG | + | chr1_1:18578829-18578848 | None:intergenic | 35.0% | |
| !!! | CCTTGGGTTTGTTTTTGATA+CGG | + | chr1_1:18578902-18578921 | None:intergenic | 35.0% |
| !! | CATATCCTTTTAGCTAACCT+TGG | + | chr1_1:18578919-18578938 | None:intergenic | 35.0% |
| CTAAAAGGATATGAACCACA+AGG | - | chr1_1:18578926-18578945 | Msa0012390:CDS | 35.0% | |
| CAAAAAAACCTATACCCTTG+TGG | + | chr1_1:18578944-18578963 | None:intergenic | 35.0% | |
| TTCTTGTAAACTGGGTAAAG+AGG | + | chr1_1:18579145-18579164 | None:intergenic | 35.0% | |
| ! | TTGAGTGTGATTTTTGCTAG+TGG | - | chr1_1:18579396-18579415 | Msa0012390:CDS | 35.0% |
| ATTCTTTAGCACCACTTACA+TGG | - | chr1_1:18579444-18579463 | Msa0012390:CDS | 35.0% | |
| ATAAATCCCTCCCATTTCAT+TGG | - | chr1_1:18579664-18579683 | Msa0012390:intron | 35.0% | |
| ! | TATGGGACTTGAGAATTTTG+CGG | + | chr1_1:18579696-18579715 | None:intergenic | 35.0% |
| TTGATCTGTTCTACAAGTCT+TGG | + | chr1_1:18579835-18579854 | None:intergenic | 35.0% | |
| ! | TTCATTCTCTTTAGAAGCAC+AGG | - | chr1_1:18579858-18579877 | Msa0012390:intron | 35.0% |
| TTCCACAGGAGCTATTATTT+CGG | - | chr1_1:18579930-18579949 | Msa0012390:intron | 35.0% | |
| ATTGAAGAAGGTAGTGAAAG+AGG | - | chr1_1:18579982-18580001 | Msa0012390:intron | 35.0% | |
| GAACAATTCTTCTTAAGGCT+GGG | + | chr1_1:18580089-18580108 | None:intergenic | 35.0% | |
| AGAACAATTCTTCTTAAGGC+TGG | + | chr1_1:18580090-18580109 | None:intergenic | 35.0% | |
| TGTTTAAAGATTCCTTCCCA+TGG | + | chr1_1:18580176-18580195 | None:intergenic | 35.0% | |
| ! | CCTTTTACAAATAAGGACCA+AGG | + | chr1_1:18580246-18580265 | None:intergenic | 35.0% |
| ! | CCTTGGTCCTTATTTGTAAA+AGG | - | chr1_1:18580243-18580262 | Msa0012390:CDS | 35.0% |
| !!! | CTATCTTGTTTTCCGACGAA+GGG | - | chr1_1:18574293-18574312 | Msa0012390:three_prime_UTR | 40.0% |
| !! | ATGAGAAGTGTTAAGGTTGG+AGG | + | chr1_1:18574414-18574433 | None:intergenic | 40.0% |
| ACTCGTAGTTGCAGCAATAA+CGG | - | chr1_1:18574533-18574552 | Msa0012390:three_prime_UTR | 40.0% | |
| GTTGAGATTAAAACTCACGG+GGG | + | chr1_1:18574588-18574607 | None:intergenic | 40.0% | |
| GGTTGAGATTAAAACTCACG+GGG | + | chr1_1:18574589-18574608 | None:intergenic | 40.0% | |
| GGGTTGAGATTAAAACTCAC+GGG | + | chr1_1:18574590-18574609 | None:intergenic | 40.0% | |
| AACTGAACTGAAGCAAAAGG+TGG | + | chr1_1:18574647-18574666 | None:intergenic | 40.0% | |
| CTGAACTGAACTGAAGCAAA+AGG | + | chr1_1:18574650-18574669 | None:intergenic | 40.0% | |
| !! | TATGGTATGCTCGCTGTTTT+AGG | - | chr1_1:18574873-18574892 | Msa0012390:CDS | 40.0% |
| !! | ATGGTATGCTCGCTGTTTTA+GGG | - | chr1_1:18574874-18574893 | Msa0012390:CDS | 40.0% |
| GGTATTGTGAACAAACAGCA+CGG | - | chr1_1:18575162-18575181 | Msa0012390:CDS | 40.0% | |
| GACTTGAGTTTAGGCAACTA+TGG | - | chr1_1:18575184-18575203 | Msa0012390:CDS | 40.0% | |
| GTTTAGGCAACTATGGAGAT+AGG | - | chr1_1:18575191-18575210 | Msa0012390:CDS | 40.0% | |
| AACACAGACAAACCACAAAG+AGG | + | chr1_1:18575229-18575248 | None:intergenic | 40.0% | |
| GGTGAATCATCTTCTGACTT+TGG | - | chr1_1:18575320-18575339 | Msa0012390:intron | 40.0% | |
| ! | TGACTTTGGTGATAGCTATG+TGG | - | chr1_1:18575334-18575353 | Msa0012390:intron | 40.0% |
| CTTTGGCAATATTCACTTGG+TGG | - | chr1_1:18575422-18575441 | Msa0012390:intron | 40.0% | |
| !! | AACTAGATTCTGCTCTAAGG+AGG | + | chr1_1:18575505-18575524 | None:intergenic | 40.0% |
| CCTTAGAGCAGAATCTAGTT+CGG | - | chr1_1:18575505-18575524 | Msa0012390:CDS | 40.0% | |
| AGGAATTCTGTAGCAGATAG+TGG | - | chr1_1:18575581-18575600 | Msa0012390:CDS | 40.0% | |
| ATTGCTGACACAATCTTCCT+TGG | - | chr1_1:18575625-18575644 | Msa0012390:CDS | 40.0% | |
| CCATGATGTCATGGTTAACA+TGG | + | chr1_1:18575915-18575934 | None:intergenic | 40.0% | |
| CCATGTTAACCATGACATCA+TGG | - | chr1_1:18575912-18575931 | Msa0012390:CDS | 40.0% | |
| !! | TCCCGAGAGCATAATGTTTT+AGG | + | chr1_1:18576098-18576117 | None:intergenic | 40.0% |
| ! | CAAGTTGGAACGAGTCTATT+TGG | - | chr1_1:18576353-18576372 | Msa0012390:intron | 40.0% |
| ! | ATGGTAGTGCTTTGACTTTG+AGG | - | chr1_1:18576383-18576402 | Msa0012390:intron | 40.0% |
| !! | ATGGTTCTAATTAGGGAAGG+AGG | - | chr1_1:18576421-18576440 | Msa0012390:intron | 40.0% |
| ! | GCTAATTTTGTGTAAGGACG+TGG | - | chr1_1:18576460-18576479 | Msa0012390:intron | 40.0% |
| GATTAATACTGAAGCCTTCC+TGG | - | chr1_1:18576711-18576730 | Msa0012390:intron | 40.0% | |
| AACTAGAACCTTTGTTGACC+AGG | + | chr1_1:18576732-18576751 | None:intergenic | 40.0% | |
| ! | GTGCCTTCTGATAAGTTGAA+TGG | - | chr1_1:18576929-18576948 | Msa0012390:intron | 40.0% |
| TTAGATGCTTCGGAGTCATA+TGG | + | chr1_1:18577128-18577147 | None:intergenic | 40.0% | |
| TGCATTGCTAGAACTTGTGA+AGG | - | chr1_1:18577172-18577191 | Msa0012390:CDS | 40.0% | |
| ! | ACGTGGGTTGTATGACTTAT+AGG | + | chr1_1:18577264-18577283 | None:intergenic | 40.0% |
| ATACAACCCACGTTTATACG+AGG | - | chr1_1:18577271-18577290 | Msa0012390:CDS | 40.0% | |
| TCTGATGCGCCAAATTTAGA+AGG | + | chr1_1:18577344-18577363 | None:intergenic | 40.0% | |
| CAACAATTCCTTGTTCGTGT+TGG | - | chr1_1:18577443-18577462 | Msa0012390:CDS | 40.0% | |
| !! | TCGTGTTGGTGCTATTGAAA+TGG | - | chr1_1:18577457-18577476 | Msa0012390:CDS | 40.0% |
| TATGCGTATTGCATTCAAGG+AGG | - | chr1_1:18577643-18577662 | Msa0012390:CDS | 40.0% | |
| GTGCAGTTAGGCATTTAGTA+CGG | - | chr1_1:18577669-18577688 | Msa0012390:intron | 40.0% | |
| CATCCGTATTATGCAATGGT+TGG | + | chr1_1:18578316-18578335 | None:intergenic | 40.0% | |
| GCATAATACGGATGATGTTG+TGG | - | chr1_1:18578322-18578341 | Msa0012390:intron | 40.0% | |
| !! | AATAAGGATGGCTTTGACAG+TGG | - | chr1_1:18578352-18578371 | Msa0012390:intron | 40.0% |
| !! | ATAAGGATGGCTTTGACAGT+GGG | - | chr1_1:18578353-18578372 | Msa0012390:intron | 40.0% |
| !! | GAATCTAAGAAGGCATTTGG+TGG | - | chr1_1:18578835-18578854 | Msa0012390:CDS | 40.0% |
| !! | TGTTTTTGATACGGCTTGCT+CGG | + | chr1_1:18578893-18578912 | None:intergenic | 40.0% |
| CCGTATCAAAAACAAACCCA+AGG | - | chr1_1:18578899-18578918 | Msa0012390:CDS | 40.0% | |
| ! | CAAACCCAAGGTTAGCTAAA+AGG | - | chr1_1:18578911-18578930 | Msa0012390:CDS | 40.0% |
| ! | GATATGAACCACAAGGGTAT+AGG | - | chr1_1:18578933-18578952 | Msa0012390:CDS | 40.0% |
| AGGACTTCAAAATCTCCACA+AGG | + | chr1_1:18579125-18579144 | None:intergenic | 40.0% | |
| !! | GCGGCTTTTTCTTGTAAACT+GGG | + | chr1_1:18579153-18579172 | None:intergenic | 40.0% |
| !! | TGCGGCTTTTTCTTGTAAAC+TGG | + | chr1_1:18579154-18579173 | None:intergenic | 40.0% |
| CACAAACTCAAGAACAGATG+CGG | + | chr1_1:18579172-18579191 | None:intergenic | 40.0% | |
| GAAATAATCGGACTCAGTGT+TGG | + | chr1_1:18579207-18579226 | None:intergenic | 40.0% | |
| !! | ACTGAGTCCGATTATTTCTG+TGG | - | chr1_1:18579209-18579228 | Msa0012390:CDS | 40.0% |
| GAAGATTAGTGCCATGTAAG+TGG | + | chr1_1:18579458-18579477 | None:intergenic | 40.0% | |
| ! | AGTGTAACTTCTGCGTTGAT+CGG | + | chr1_1:18579799-18579818 | None:intergenic | 40.0% |
| ! | CTCTTTAGAAGCACAGGAAA+AGG | - | chr1_1:18579864-18579883 | Msa0012390:intron | 40.0% |
| TAGAATAGTATCTGAAGGGG+TGG | - | chr1_1:18579903-18579922 | Msa0012390:intron | 40.0% | |
| TTCCGAAATAATAGCTCCTG+TGG | + | chr1_1:18579935-18579954 | None:intergenic | 40.0% | |
| ACAGGAGCTATTATTTCGGA+AGG | - | chr1_1:18579934-18579953 | Msa0012390:intron | 40.0% | |
| CAGGAGCTATTATTTCGGAA+GGG | - | chr1_1:18579935-18579954 | Msa0012390:intron | 40.0% | |
| AGGAGCTATTATTTCGGAAG+GGG | - | chr1_1:18579936-18579955 | Msa0012390:intron | 40.0% | |
| TTGGTGAAGCTGATTGAAGA+AGG | - | chr1_1:18579970-18579989 | Msa0012390:intron | 40.0% | |
| TTCTGTCAGAAAAACCACAG+TGG | - | chr1_1:18580106-18580125 | Msa0012390:intron | 40.0% | |
| AGAAAAACCACAGTGGCAAA+GGG | - | chr1_1:18580113-18580132 | Msa0012390:intron | 40.0% | |
| ACTTCATTTGCTCAGGAGTT+TGG | - | chr1_1:18580137-18580156 | Msa0012390:intron | 40.0% | |
| !!! | TCTTAGTTTTGGGTCAGTTG+AGG | - | chr1_1:18580301-18580320 | Msa0012390:CDS | 40.0% |
| !!! | CTTAGTTTTGGGTCAGTTGA+GGG | - | chr1_1:18580302-18580321 | Msa0012390:CDS | 40.0% |
| CCTTCGTCGGAAAACAAGAT+AGG | + | chr1_1:18574295-18574314 | None:intergenic | 45.0% | |
| !!! | CCTATCTTGTTTTCCGACGA+AGG | - | chr1_1:18574292-18574311 | Msa0012390:three_prime_UTR | 45.0% |
| !! | AGGAAGAGGGTGTTAGGATT+GGG | + | chr1_1:18574394-18574413 | None:intergenic | 45.0% |
| GTGTTAAGGTTGGAGGAAGA+GGG | + | chr1_1:18574407-18574426 | None:intergenic | 45.0% | |
| AGTGTTAAGGTTGGAGGAAG+AGG | + | chr1_1:18574408-18574427 | None:intergenic | 45.0% | |
| !! | GCGCGAAATGAGAAGTGTTA+AGG | + | chr1_1:18574421-18574440 | None:intergenic | 45.0% |
| GTAAAGAGAGGGAGTTTGGA+GGG | + | chr1_1:18574506-18574525 | None:intergenic | 45.0% | |
| GAGTGAACCTGGTAAAGAGA+GGG | + | chr1_1:18574517-18574536 | None:intergenic | 45.0% | |
| AACAGCACGGACTTGAGTTT+AGG | - | chr1_1:18575175-18575194 | Msa0012390:CDS | 45.0% | |
| !! | GCCTTGTTTGTTCGTATGCT+AGG | - | chr1_1:18575356-18575375 | Msa0012390:intron | 45.0% |
| GCCTAGCATACGAACAAACA+AGG | + | chr1_1:18575360-18575379 | None:intergenic | 45.0% | |
| CCGAACTAGATTCTGCTCTA+AGG | + | chr1_1:18575508-18575527 | None:intergenic | 45.0% | |
| ! | AGAATCTAGTTCGGCTTGTG+AGG | - | chr1_1:18575514-18575533 | Msa0012390:CDS | 45.0% |
| ACAATCTTCCTTGGCTTCTG+AGG | - | chr1_1:18575634-18575653 | Msa0012390:CDS | 45.0% | |
| !! | TTCCTTGGCTTCTGAGGTAT+AGG | - | chr1_1:18575640-18575659 | Msa0012390:CDS | 45.0% |
| TTCCTATACCTCAGAAGCCA+AGG | + | chr1_1:18575645-18575664 | None:intergenic | 45.0% | |
| CTGCTTCAACCATGATGTCA+TGG | + | chr1_1:18575924-18575943 | None:intergenic | 45.0% | |
| CATGACATCATGGTTGAAGC+AGG | - | chr1_1:18575922-18575941 | Msa0012390:CDS | 45.0% | |
| CATAAGCAGGCCACTATAGA+AGG | + | chr1_1:18576217-18576236 | None:intergenic | 45.0% | |
| TTCCTGCTCAAGAGTTGTGT+TGG | - | chr1_1:18576252-18576271 | Msa0012390:CDS | 45.0% | |
| AACCAACACAACTCTTGAGC+AGG | + | chr1_1:18576257-18576276 | None:intergenic | 45.0% | |
| AGAACCTTTGTTGACCAGGA+AGG | + | chr1_1:18576728-18576747 | None:intergenic | 45.0% | |
| GTTGAGATTTAGGGATCGGA+TGG | + | chr1_1:18576893-18576912 | None:intergenic | 45.0% | |
| GCATCAAGAGAAAGGACCTT+TGG | + | chr1_1:18577051-18577070 | None:intergenic | 45.0% | |
| TAGGCTGCAGCACCTATTAA+TGG | + | chr1_1:18577245-18577264 | None:intergenic | 45.0% | |
| CTTTCGATTTCTGTGCCATC+TGG | + | chr1_1:18577308-18577327 | None:intergenic | 45.0% | |
| CAGATGGCACAGAAATCGAA+AGG | - | chr1_1:18577306-18577325 | Msa0012390:CDS | 45.0% | |
| !! | GGCGCATCAGAAGTACTTAT+TGG | - | chr1_1:18577353-18577372 | Msa0012390:CDS | 45.0% |
| CAATAGCACCAACACGAACA+AGG | + | chr1_1:18577454-18577473 | None:intergenic | 45.0% | |
| ACACTCTTGCATTGGATCGA+CGG | - | chr1_1:18577527-18577546 | Msa0012390:CDS | 45.0% | |
| ! | CAATGATAATGCAGTCCAGC+TGG | - | chr1_1:18577703-18577722 | Msa0012390:intron | 45.0% |
| ! | CTTTGGAAAAGCTGTCTGCT+AGG | - | chr1_1:18577738-18577757 | Msa0012390:intron | 45.0% |
| CAGTTGACAGGGAGAAAAGA+TGG | - | chr1_1:18577961-18577980 | Msa0012390:intron | 45.0% | |
| ATGGTGAAAGGTAGACCCTA+TGG | - | chr1_1:18578229-18578248 | Msa0012390:intron | 45.0% | |
| TAAAGGAGCTAAACCACCCT+CGG | + | chr1_1:18578507-18578526 | None:intergenic | 45.0% | |
| TTAAATCGCTCAGACGTAGC+TGG | - | chr1_1:18578536-18578555 | Msa0012390:intron | 45.0% | |
| CGCATCTGTTCTTGAGTTTG+TGG | - | chr1_1:18579170-18579189 | Msa0012390:CDS | 45.0% | |
| GCTATTGAACTTGAAGAGGC+CGG | - | chr1_1:18579574-18579593 | Msa0012390:intron | 45.0% | |
| TGCTGCAGATATTGCAAGAC+CGG | + | chr1_1:18579596-18579615 | None:intergenic | 45.0% | |
| ! | ATTCAGCACTTCTAGCTGCT+GGG | - | chr1_1:18580058-18580077 | Msa0012390:intron | 45.0% |
| CAGAAAAACCACAGTGGCAA+AGG | - | chr1_1:18580112-18580131 | Msa0012390:intron | 45.0% | |
| !! | AAAGGGCACTTCATTTGCTC+AGG | - | chr1_1:18580130-18580149 | Msa0012390:intron | 45.0% |
| TTGGAAACATGACGAGTCCA+TGG | - | chr1_1:18580156-18580175 | Msa0012390:intron | 45.0% | |
| TGGAAACATGACGAGTCCAT+GGG | - | chr1_1:18580157-18580176 | Msa0012390:intron | 45.0% | |
| AGTTGAGGGCAAAGTCTACT+TGG | - | chr1_1:18580316-18580335 | Msa0012390:CDS | 45.0% | |
| GTTGAGGGCAAAGTCTACTT+GGG | - | chr1_1:18580317-18580336 | Msa0012390:CDS | 45.0% | |
| ! | TTGTTTTCCGACGAAGGGTC+TGG | - | chr1_1:18574298-18574317 | Msa0012390:three_prime_UTR | 50.0% |
| !! | GAGGAAGAGGGTGTTAGGAT+TGG | + | chr1_1:18574395-18574414 | None:intergenic | 50.0% |
| ! | GGGTGATTTGGAAGAGTACG+AGG | + | chr1_1:18574486-18574505 | None:intergenic | 50.0% |
| AGGGAGTTTGGAGGGTGATT+TGG | + | chr1_1:18574498-18574517 | None:intergenic | 50.0% | |
| GGTAAAGAGAGGGAGTTTGG+AGG | + | chr1_1:18574507-18574526 | None:intergenic | 50.0% | |
| CCTGGTAAAGAGAGGGAGTT+TGG | + | chr1_1:18574510-18574529 | None:intergenic | 50.0% | |
| CCAAACTCCCTCTCTTTACC+AGG | - | chr1_1:18574507-18574526 | Msa0012390:three_prime_UTR | 50.0% | |
| CGAGTGAACCTGGTAAAGAG+AGG | + | chr1_1:18574518-18574537 | None:intergenic | 50.0% | |
| ATTAAAACTCACGGGGGAGG+CGG | + | chr1_1:18574582-18574601 | None:intergenic | 50.0% | |
| GAGATTAAAACTCACGGGGG+AGG | + | chr1_1:18574585-18574604 | None:intergenic | 50.0% | |
| !!! | TCGCTGTTTTAGGGCCTGTT+TGG | - | chr1_1:18574883-18574902 | Msa0012390:CDS | 50.0% |
| ATCTTCACTCGCTTCGTGAG+TGG | - | chr1_1:18575114-18575133 | Msa0012390:CDS | 50.0% | |
| GAAAGTGAAGGAAGCTGCAG+CGG | - | chr1_1:18575864-18575883 | Msa0012390:CDS | 50.0% | |
| AAAGTGAAGGAAGCTGCAGC+GGG | - | chr1_1:18575865-18575884 | Msa0012390:CDS | 50.0% | |
| AAGTTCCTACAGAGCAGGAG+AGG | + | chr1_1:18576158-18576177 | None:intergenic | 50.0% | |
| TCTCCTGCTCTGTAGGAACT+TGG | - | chr1_1:18576157-18576176 | Msa0012390:intron | 50.0% | |
| GAAGCCTTCCTGGTCAACAA+AGG | - | chr1_1:18576721-18576740 | Msa0012390:intron | 50.0% | |
| GCAGCACCTATTAATGGCAC+AGG | + | chr1_1:18577239-18577258 | None:intergenic | 50.0% | |
| TCTGTGCCATCTGGAAATGC+AGG | + | chr1_1:18577299-18577318 | None:intergenic | 50.0% | |
| !! | CAATGCAAGAGTGTCAGACG+CGG | + | chr1_1:18577521-18577540 | None:intergenic | 50.0% |
| CGTATTGCATTCAAGGAGGC+TGG | - | chr1_1:18577647-18577666 | Msa0012390:CDS | 50.0% | |
| TTGCCGAGTGATTGAAACCG+AGG | - | chr1_1:18578487-18578506 | Msa0012390:intron | 50.0% | |
| TGCCGAGTGATTGAAACCGA+GGG | - | chr1_1:18578488-18578507 | Msa0012390:intron | 50.0% | |
| CACCCTCGGTTTCAATCACT+CGG | + | chr1_1:18578493-18578512 | None:intergenic | 50.0% | |
| AGACGTAGCTGGAGCTATTG+CGG | - | chr1_1:18578547-18578566 | Msa0012390:intron | 50.0% | |
| AGCTGGAGCTATTGCGGAAA+AGG | - | chr1_1:18578553-18578572 | Msa0012390:intron | 50.0% | |
| !! | TGGAGCCGATGATGGATCAA+AGG | - | chr1_1:18578855-18578874 | Msa0012390:CDS | 50.0% |
| ! | AGTTTTCACTGCACGCCTTG+TGG | - | chr1_1:18579107-18579126 | Msa0012390:intron | 50.0% |
| AGCAGAGACAGAATCTGACG+TGG | - | chr1_1:18579528-18579547 | Msa0012390:intron | 50.0% | |
| AGCGTGCCAATGAAATGGGA+GGG | + | chr1_1:18579673-18579692 | None:intergenic | 50.0% | |
| TTTGCTGCGGAGGGGAATAT+GGG | + | chr1_1:18579713-18579732 | None:intergenic | 50.0% | |
| TACCCAATCTTTGCTGCGGA+GGG | + | chr1_1:18579722-18579741 | None:intergenic | 50.0% | |
| CAGCTACCCAATCTTTGCTG+CGG | + | chr1_1:18579726-18579745 | None:intergenic | 50.0% | |
| GGAAGGGGCTGTGTATTCTT+TGG | - | chr1_1:18579951-18579970 | Msa0012390:intron | 50.0% | |
| !! | CAGCAGCTAGAAGTGCTGAA+TGG | + | chr1_1:18580059-18580078 | None:intergenic | 50.0% |
| ! | CATTCAGCACTTCTAGCTGC+TGG | - | chr1_1:18580057-18580076 | Msa0012390:intron | 50.0% |
| ! | TTCAGCACTTCTAGCTGCTG+GGG | - | chr1_1:18580059-18580078 | Msa0012390:intron | 50.0% |
| AACATGACGAGTCCATGGGA+AGG | - | chr1_1:18580161-18580180 | Msa0012390:intron | 50.0% | |
| !! | AACCAGTCATCGACTCACAC+CGG | + | chr1_1:18580482-18580501 | None:intergenic | 50.0% |
| TCCAGTTCCAGACCCTTCGT+CGG | + | chr1_1:18574308-18574327 | None:intergenic | 55.0% | |
| !! | GGTTGGAGGAAGAGGGTGTT+AGG | + | chr1_1:18574400-18574419 | None:intergenic | 55.0% |
| CGAGGAAGAGAGAGTGACTC+TGG | + | chr1_1:18574468-18574487 | None:intergenic | 55.0% | |
| GCTGCAACTACGAGTGAACC+TGG | + | chr1_1:18574528-18574547 | None:intergenic | 55.0% | |
| TTAAAACTCACGGGGGAGGC+GGG | + | chr1_1:18574581-18574600 | None:intergenic | 55.0% | |
| ! | GGAAGCTGCAGCGGGTATTT+TGG | - | chr1_1:18575873-18575892 | Msa0012390:CDS | 55.0% |
| TACAGAGCAGGAGAGGATCC+AGG | + | chr1_1:18576151-18576170 | None:intergenic | 55.0% | |
| TGGATCCTCTCCTGCTCTGT+AGG | - | chr1_1:18576150-18576169 | Msa0012390:intron | 55.0% | |
| CTGCCAAGTTCCTACAGAGC+AGG | + | chr1_1:18576163-18576182 | None:intergenic | 55.0% | |
| CAGGCGCCTCGTATAAACGT+GGG | + | chr1_1:18577280-18577299 | None:intergenic | 55.0% | |
| CGCGTCTGACACTCTTGCAT+TGG | - | chr1_1:18577519-18577538 | Msa0012390:CDS | 55.0% | |
| TCAAGGAGGCTGGTGCAGTT+AGG | - | chr1_1:18577657-18577676 | Msa0012390:intron | 55.0% | |
| CGAGTGATTGAAACCGAGGG+TGG | - | chr1_1:18578491-18578510 | Msa0012390:intron | 55.0% | |
| ! | GCATTTGGTGGAGCCGATGA+TGG | - | chr1_1:18578847-18578866 | Msa0012390:CDS | 55.0% |
| GAGCGTGCCAATGAAATGGG+AGG | + | chr1_1:18579674-18579693 | None:intergenic | 55.0% | |
| GCGGAGCGTGCCAATGAAAT+GGG | + | chr1_1:18579677-18579696 | None:intergenic | 55.0% | |
| TGCGGAGCGTGCCAATGAAA+TGG | + | chr1_1:18579678-18579697 | None:intergenic | 55.0% | |
| CTTTGCTGCGGAGGGGAATA+TGG | + | chr1_1:18579714-18579733 | None:intergenic | 55.0% | |
| TTCCCCTCCGCAGCAAAGAT+TGG | - | chr1_1:18579716-18579735 | Msa0012390:intron | 55.0% | |
| TCCCCTCCGCAGCAAAGATT+GGG | - | chr1_1:18579717-18579736 | Msa0012390:intron | 55.0% | |
| ACCCAATCTTTGCTGCGGAG+GGG | + | chr1_1:18579721-18579740 | None:intergenic | 55.0% | |
| CTACCCAATCTTTGCTGCGG+AGG | + | chr1_1:18579723-18579742 | None:intergenic | 55.0% | |
| GAAGGGGTGGTAGATTCCAC+AGG | - | chr1_1:18579916-18579935 | Msa0012390:intron | 55.0% | |
| ! | TGAAGTGCCCTTTGCCACTG+TGG | + | chr1_1:18580123-18580142 | None:intergenic | 55.0% |
| TACCGGTGTGAGTCGATGAC+TGG | - | chr1_1:18580477-18580496 | Msa0012390:CDS | 55.0% | |
| ! | TCCGACGAAGGGTCTGGAAC+TGG | - | chr1_1:18574304-18574323 | Msa0012390:three_prime_UTR | 60.0% |
| GCAGGCGCCTCGTATAAACG+TGG | + | chr1_1:18577281-18577300 | None:intergenic | 60.0% | |
| ! | GAGGCGCCTGCATTTCCAGA+TGG | - | chr1_1:18577290-18577309 | Msa0012390:CDS | 60.0% |
| ! | TCGGCTTGTGAGGCAGCTGC+AGG | - | chr1_1:18575524-18575543 | Msa0012390:CDS | 65.0% |
| AAGCTTGCGTCGCTGCCAGC+TGG | + | chr1_1:18577721-18577740 | None:intergenic | 65.0% | |
| GCTGGCAGCGACGCAAGCTT+TGG | - | chr1_1:18577721-18577740 | Msa0012390:intron | 65.0% | |
| ! | CACGGGGGAGGCGGGAGCAG+CGG | + | chr1_1:18574573-18574592 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 18574278 | 18580506 | 18574278 | ID=Msa0012390;Name=Msa0012390 |
| chr1_1 | mRNA | 18574278 | 18580506 | 18574278 | ID=Msa0012390-mRNA-1;Parent=Msa0012390;Name=Msa0012390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|1|1|1|1|9|339|873 |
| chr1_1 | exon | 18574278 | 18575254 | 18574278 | ID=Msa0012390-mRNA-1:exon:6823;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18575499 | 18575695 | 18575499 | ID=Msa0012390-mRNA-1:exon:6822;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18575864 | 18575970 | 18575864 | ID=Msa0012390-mRNA-1:exon:6821;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18576051 | 18576104 | 18576051 | ID=Msa0012390-mRNA-1:exon:6820;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18576210 | 18576306 | 18576210 | ID=Msa0012390-mRNA-1:exon:6819;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18577025 | 18577671 | 18577025 | ID=Msa0012390-mRNA-1:exon:6818;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18578824 | 18579039 | 18578824 | ID=Msa0012390-mRNA-1:exon:6817;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18579129 | 18579482 | 18579129 | ID=Msa0012390-mRNA-1:exon:6816;Parent=Msa0012390-mRNA-1 |
| chr1_1 | exon | 18580195 | 18580506 | 18580195 | ID=Msa0012390-mRNA-1:exon:6815;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18580195 | 18580506 | 18580195 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18579129 | 18579482 | 18579129 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18578824 | 18579039 | 18578824 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18577025 | 18577671 | 18577025 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18576210 | 18576306 | 18576210 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18576051 | 18576104 | 18576051 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18575864 | 18575970 | 18575864 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18575499 | 18575695 | 18575499 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | CDS | 18574617 | 18575254 | 18574617 | ID=Msa0012390-mRNA-1:cds;Parent=Msa0012390-mRNA-1 |
| chr1_1 | three_prime_UTR | 18574278 | 18574616 | 18574278 | ID=Msa0012390-mRNA-1:three_prime_utr;Parent=Msa0012390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
