AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449270 MtrunA17_Chr2g0322661 95.536 448 18 2 1 447 1 447 0.0 883
Msa1449270 MtrunA17_Chr2g0310021 98.176 329 6 0 119 447 1 329 0.0 677
Msa1449270 MtrunA17_Chr6g0476711 45.845 373 190 4 80 446 52 418 1.01e-110 332
Msa1449270 MtrunA17_Chr5g0431221 44.809 366 178 5 95 437 53 417 5.34e-104 315
Msa1449270 MtrunA17_Chr1g0176431 38.525 366 213 8 88 446 36 396 6.40e-81 255
Msa1449270 MtrunA17_Chr2g0322841 36.149 296 162 2 137 432 55 323 9.81e-64 209
Msa1449270 MtrunA17_Chr2g0305661 53.846 78 27 4 1 73 1 74 6.68e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449270 AT5G57930.2 72.283 368 101 1 80 447 77 443 0.0 553
Msa1449270 AT5G57930.1 72.283 368 101 1 80 447 74 440 0.0 553
Msa1449270 AT1G64810.1 43.158 380 206 5 73 446 60 435 1.03e-108 328
Msa1449270 AT1G64810.2 43.158 380 206 5 73 446 84 459 1.36e-108 329
Msa1449270 AT5G61930.1 43.681 364 198 4 77 437 34 393 1.91e-101 308
Msa1449270 AT5G61930.2 43.681 364 198 4 77 437 34 393 1.91e-101 308
Msa1449270 AT3G21740.1 32.857 350 187 7 85 431 16 320 1.08e-59 199

Find 151 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCGGTTATATTGTCTTTC+TGG 0.107665 tig0032473:-37287 Msa1449270:CDS
CACGAATAGGGAAAGAGTTT+TGG 0.227943 tig0032473:+37483 None:intergenic
CTGGGGCCAACATGAATTTC+AGG 0.229614 tig0032473:+33992 None:intergenic
TCCTCATTTGTTCCCATGCT+TGG 0.255654 tig0032473:+34068 None:intergenic
ATGGCTTTAATCTCATTTCT+AGG 0.266614 tig0032473:-33285 Msa1449270:three_prime_UTR
TTCGAGAGTTTCCCACAAAA+AGG 0.289551 tig0032473:-34267 Msa1449270:CDS
TTCACTAGCAATCCATTCTT+TGG 0.294053 tig0032473:+34916 None:intergenic
TTCTTCCCAATACGGATTAT+TGG 0.295755 tig0032473:+34235 None:intergenic
CATCATATGCTTCTGGTATA+AGG 0.312803 tig0032473:+34890 None:intergenic
ACCAAACACAACCACAATAT+TGG 0.323045 tig0032473:-37389 Msa1449270:CDS
ACCAATATTGTGGTTGTGTT+TGG 0.344619 tig0032473:+37388 None:intergenic
GCATATGGAACTACACGAAT+AGG 0.346029 tig0032473:+37470 None:intergenic
ATTATGTGGTTAGTTCTTGT+TGG 0.347037 tig0032473:-33607 Msa1449270:three_prime_UTR
GTAAATCCTGTGACATTCTC+TGG 0.354488 tig0032473:-33257 Msa1449270:three_prime_UTR
GACTTGAATGGATGTCCAAC+AGG 0.354842 tig0032473:+34484 None:intergenic
CCATTCTTTGGCGCCGGCAT+TGG 0.357399 tig0032473:+34928 None:intergenic
TTATGTGGTTAGTTCTTGTT+GGG 0.365019 tig0032473:-33606 Msa1449270:three_prime_UTR
CATGCTGCCCATTGCGTTGT+TGG 0.366370 tig0032473:+33933 None:intergenic
ATTGTTGATTTATATTGTTC+TGG 0.374651 tig0032473:+33755 None:intergenic
TTATACACATCATATGCTTC+TGG 0.384833 tig0032473:+34883 None:intergenic
TTGTAGAAGATCTACAAAAT+TGG 0.386606 tig0032473:-33523 Msa1449270:three_prime_UTR
AACTCTTAAAGAAGCTGAAA+TGG 0.397356 tig0032473:-33708 Msa1449270:CDS
ACAAACACCAACAACGCAAT+GGG 0.400408 tig0032473:-33940 Msa1449270:CDS
TTAATCTCATTTCTAGGTAA+AGG 0.401120 tig0032473:-33279 Msa1449270:three_prime_UTR
CAAATTCCTTCTTCCCAATA+CGG 0.402113 tig0032473:+34227 None:intergenic
AGGCTAGGAGGGTACCTGTT+TGG 0.408305 tig0032473:-33429 Msa1449270:three_prime_UTR
ATTGGCTTCCCACACGCATA+TGG 0.413894 tig0032473:+37455 None:intergenic
GAAAGCCAATAATCCGTATT+GGG 0.415745 tig0032473:-34240 Msa1449270:CDS
CACAAACACCAACAACGCAA+TGG 0.418316 tig0032473:-33941 Msa1449270:CDS
ATTATTTCCTCCTTGTTCAC+TGG 0.419157 tig0032473:+34112 None:intergenic
TTCATAATTGAGGTTAATCA+TGG 0.419896 tig0032473:+33365 None:intergenic
CAACAATGCGCCTTGATGTC+GGG 0.421177 tig0032473:-33739 Msa1449270:CDS
CCAATGCCGGCGCCAAAGAA+TGG 0.421451 tig0032473:-34928 Msa1449270:CDS
CAAAATTGGTGTCAGGTTGA+TGG 0.424072 tig0032473:-33509 Msa1449270:three_prime_UTR
CAAGTAAAATATTTCCAAAC+AGG 0.432813 tig0032473:+33415 None:intergenic
GTACATCCTCATTAGTCTCT+TGG 0.434855 tig0032473:+34039 None:intergenic
TTGTCTTTCTGGAGGGAGAA+TGG 0.435712 tig0032473:-37276 Msa1449270:CDS
GTACCTTTACATGACTTGAA+TGG 0.436859 tig0032473:+34472 None:intergenic
AGAAAGCCAATAATCCGTAT+TGG 0.437497 tig0032473:-34241 Msa1449270:CDS
ATGCAGAGCTCAACCACTGC+TGG 0.441347 tig0032473:+34307 None:intergenic
TCAGCTTCTTTAAGAGTTGA+AGG 0.442885 tig0032473:+33713 None:intergenic
GACATGATTGCAAGGAAGCT+TGG 0.444488 tig0032473:+33469 None:intergenic
TCCTCGGCATTATTCGAGAA+AGG 0.445340 tig0032473:-35040 Msa1449270:CDS
CGTAGTTCAACAATGGGAAC+TGG 0.447244 tig0032473:+35003 None:intergenic
CATATGGAACTACACGAATA+GGG 0.450707 tig0032473:+37471 None:intergenic
GTCTCTCTCTCAAACACAAT+CGG 0.454144 tig0032473:-37422 Msa1449270:CDS
GAATTTCTACGGACAGGCTC+CGG 0.455934 tig0032473:-33816 Msa1449270:CDS
TCAACAATGGGAACTGGAAA+AGG 0.470165 tig0032473:+35009 None:intergenic
TGTGGTGGAAATGTGCATTC+AGG 0.470274 tig0032473:-33792 Msa1449270:CDS
AGAGAGACCGTTGATGCCAT+TGG 0.471070 tig0032473:+37437 None:intergenic
GGCACAAAGCTCAAAATTGT+GGG 0.472497 tig0032473:-33967 Msa1449270:CDS
AAAGTCAAAATTAATGCAGT+TGG 0.480517 tig0032473:-33646 Msa1449270:three_prime_UTR
AGTGGTGGTCCGTTTACATC+AGG 0.485410 tig0032473:+33854 None:intergenic
AAATTCATGTTGGCCCCAGC+GGG 0.486646 tig0032473:-33988 Msa1449270:CDS
GATGTCCAACAGGGCCTACA+TGG 0.490856 tig0032473:+34494 None:intergenic
AGATCTACAAAATTGGTGTC+AGG 0.494832 tig0032473:-33516 Msa1449270:three_prime_UTR
TATTGGGAAGAAGGAATTTG+TGG 0.495922 tig0032473:-34224 Msa1449270:CDS
AGCAATCCATTCTTTGGCGC+CGG 0.496028 tig0032473:+34922 None:intergenic
GATTAACCTCAATTATGAAA+AGG 0.496352 tig0032473:-33361 Msa1449270:three_prime_UTR
GGGCACAAAGCTCAAAATTG+TGG 0.496832 tig0032473:-33968 Msa1449270:CDS
GAAATCCATGTAGGCCCTGT+TGG 0.497522 tig0032473:-34499 Msa1449270:CDS
GGAGCAACTATATCTGAATC+CGG 0.501034 tig0032473:+34133 None:intergenic
AATAATCCGTATTGGGAAGA+AGG 0.501252 tig0032473:-34233 Msa1449270:CDS
CGGACAGGCTCCGGCTGTGG+TGG 0.501720 tig0032473:-33807 Msa1449270:CDS
CTGAGGAAACACTCCAAGCA+TGG 0.502752 tig0032473:-34081 Msa1449270:CDS
TCCGCAAGGGCATTCATGAA+TGG 0.506124 tig0032473:-34438 Msa1449270:CDS
CAGCTATCAACGGTTGTGTA+GGG 0.507508 tig0032473:+34161 None:intergenic
TTTCACCTCTATGATCGTCT+TGG 0.508754 tig0032473:-34373 Msa1449270:CDS
TAGTACCCGTGCATGCTTGT+GGG 0.512728 tig0032473:-34816 Msa1449270:intron
TGGGGCCAACATGAATTTCA+GGG 0.515791 tig0032473:+33993 None:intergenic
TAAATCCTGTGACATTCTCT+GGG 0.516055 tig0032473:-33256 Msa1449270:three_prime_UTR
AATACTAGAATAACATTATG+TGG 0.516949 tig0032473:-33621 Msa1449270:three_prime_UTR
CGGTTATATTGTCTTTCTGG+AGG 0.517532 tig0032473:-37284 Msa1449270:CDS
TTGAACTACGACGGGCAGCT+AGG 0.518556 tig0032473:-34990 Msa1449270:CDS
TGATTATGATGCAGCTTCCA+AGG 0.521646 tig0032473:-37237 Msa1449270:intron
TCAGCTATCAACGGTTGTGT+AGG 0.522492 tig0032473:+34160 None:intergenic
TCCCATTGTTGAACTACGAC+GGG 0.525008 tig0032473:-34998 Msa1449270:CDS
CGAGAGCTTAAGAATTTCTA+CGG 0.525937 tig0032473:-33827 Msa1449270:CDS
GGAACATGCCACACAAATCT+CGG 0.526596 tig0032473:+33875 None:intergenic
TCAACAATGCGCCTTGATGT+CGG 0.526989 tig0032473:-33740 Msa1449270:CDS
ACCGTTGATAGCTGAAATAC+CGG 0.529110 tig0032473:-34152 Msa1449270:CDS
GTTGTGTTGGGAGGAATGGA+TGG 0.535605 tig0032473:+37527 None:intergenic
CATCCATTCAAGTCATGTAA+AGG 0.535813 tig0032473:-34475 Msa1449270:CDS
TAGAGGTGAAATGCGTCAAT+CGG 0.537159 tig0032473:+34385 None:intergenic
AACGCAATGGGCAGCATGGT+TGG 0.540595 tig0032473:-33928 Msa1449270:CDS
AACAGAGATTCTCCATCCCT+CGG 0.542922 tig0032473:-34333 Msa1449270:CDS
CACTGCTGGAATCCGAGGGA+TGG 0.542954 tig0032473:+34321 None:intergenic
ATGTACCACGTGAGGGTCTG+TGG 0.544175 tig0032473:-34022 Msa1449270:CDS
TGGCATGTTCCTGATGTAAA+CGG 0.545448 tig0032473:-33863 Msa1449270:CDS
GGTTATATTGTCTTTCTGGA+GGG 0.545916 tig0032473:-37283 Msa1449270:CDS
GCCAAGGAGAAAACCAATGC+CGG 0.547481 tig0032473:-34941 Msa1449270:CDS
TTCTTAAGCTCTCGTTCTAG+TGG 0.551263 tig0032473:+33836 None:intergenic
CAGCTTCTTTAAGAGTTGAA+GGG 0.551992 tig0032473:+33714 None:intergenic
GTTGAGCTCTGCATTCAAGC+TGG 0.552474 tig0032473:-34298 Msa1449270:CDS
CTTGGAGTGTTTCCTCAGCA+AGG 0.553502 tig0032473:+34086 None:intergenic
TTGAAGGGATCCCGACATCA+AGG 0.558127 tig0032473:+33729 None:intergenic
CATATGATGTGTATAATGCT+AGG 0.560221 tig0032473:-34876 Msa1449270:CDS
TGAACTACGACGGGCAGCTA+GGG 0.562440 tig0032473:-34989 Msa1449270:CDS
ATGCACATTTCCACCACAGC+CGG 0.563071 tig0032473:+33797 None:intergenic
AGTTAAGTTTACCAATATTG+TGG 0.566622 tig0032473:+37378 None:intergenic
TAATTACCCACAAGCATGCA+CGG 0.568910 tig0032473:+34810 None:intergenic
CATCCCTCGGATTCCAGCAG+TGG 0.569277 tig0032473:-34320 Msa1449270:CDS
TATAGTTGCTCCAGTGAACA+AGG 0.574997 tig0032473:-34122 Msa1449270:CDS
TCAACCACTGCTGGAATCCG+AGG 0.576038 tig0032473:+34316 None:intergenic
GTGGAAATGTGCATTCAGGC+TGG 0.577493 tig0032473:-33788 Msa1449270:CDS
TGGGAAGCCAATGGCATCAA+CGG 0.577594 tig0032473:-37444 Msa1449270:exon
TGCCCGTCGTAGTTCAACAA+TGG 0.579940 tig0032473:+34996 None:intergenic
TTAAGCTCTCGTTCTAGTGG+TGG 0.579997 tig0032473:+33839 None:intergenic
TCCATTCATGAATGCCCTTG+CGG 0.584521 tig0032473:+34437 None:intergenic
TCCAAGCATGGGAACAAATG+AGG 0.587102 tig0032473:-34069 Msa1449270:CDS
TCCGGTATTTCAGCTATCAA+CGG 0.591524 tig0032473:+34151 None:intergenic
AGAAGATGAAAGATGAGCCA+AGG 0.591809 tig0032473:-34957 Msa1449270:CDS
GTTGACAGGACATGATTGCA+AGG 0.593601 tig0032473:+33461 None:intergenic
CGTGTAGTTCCATATGCGTG+TGG 0.597764 tig0032473:-37464 Msa1449270:five_prime_UTR
TACGACGGGCAGCTAGGGAG+AGG 0.599315 tig0032473:-34984 Msa1449270:CDS
AAAGCCCCAGAGAATGTCAC+AGG 0.602376 tig0032473:+33251 None:intergenic
TTCCCATTGTTGAACTACGA+CGG 0.604042 tig0032473:-34999 Msa1449270:CDS
GGAAATAATCCACCTTGCTG+AGG 0.604198 tig0032473:-34098 Msa1449270:CDS
TGAGGAAACACTCCAAGCAT+GGG 0.604765 tig0032473:-34080 Msa1449270:CDS
CAACAACGCAATGGGCAGCA+TGG 0.607620 tig0032473:-33932 Msa1449270:CDS
CAACCACTGCTGGAATCCGA+GGG 0.607681 tig0032473:+34317 None:intergenic
TATGTGGTTAGTTCTTGTTG+GGG 0.609523 tig0032473:-33605 Msa1449270:three_prime_UTR
TCCTTTCTCGAATAATGCCG+AGG 0.613103 tig0032473:+35039 None:intergenic
TACACAGTCGAACATCCGCA+AGG 0.613806 tig0032473:-34452 Msa1449270:CDS
GAGGCGCCAAGAGACTAATG+AGG 0.615195 tig0032473:-34045 Msa1449270:CDS
CTTGTTGTAAAAGTATGACA+TGG 0.617143 tig0032473:-33304 Msa1449270:three_prime_UTR
GTAGTACCCGTGCATGCTTG+TGG 0.617486 tig0032473:-34817 Msa1449270:CDS
TTTGAGCTTTGTGCCCGCTG+GGG 0.618785 tig0032473:+33975 None:intergenic
TATTGCCCTGAAATTCATGT+TGG 0.628271 tig0032473:-33998 Msa1449270:CDS
GAAATTCATGTTGGCCCCAG+CGG 0.630747 tig0032473:-33989 Msa1449270:CDS
GCTTTCCAAGACGATCATAG+AGG 0.631399 tig0032473:+34368 None:intergenic
AATTACCCACAAGCATGCAC+GGG 0.635868 tig0032473:+34811 None:intergenic
TAATGAGGATGTACCACGTG+AGG 0.636087 tig0032473:-34030 Msa1449270:CDS
GGAGTGTTTCCTCAGCAAGG+TGG 0.637703 tig0032473:+34089 None:intergenic
TGATACCGCCGAGATTTGTG+TGG 0.637899 tig0032473:-33883 Msa1449270:CDS
TCTATGATCGTCTTGGAAAG+CGG 0.638858 tig0032473:-34366 Msa1449270:CDS
ATATGCGTGTGGGAAGCCAA+TGG 0.642526 tig0032473:-37453 Msa1449270:exon
TGGTGCAGTGAAATCCATGT+AGG 0.642614 tig0032473:-34508 Msa1449270:CDS
GTGTAGTTCCATATGCGTGT+GGG 0.646651 tig0032473:-37463 Msa1449270:five_prime_UTR
GCACAAAGCTCAAAATTGTG+GGG 0.649190 tig0032473:-33966 Msa1449270:CDS
TGAATGGACAAATGCACATG+TGG 0.654066 tig0032473:-34422 Msa1449270:CDS
GCATGGGAACAAATGAGGAG+AGG 0.663518 tig0032473:-34064 Msa1449270:CDS
ACTTGAATGGATGTCCAACA+GGG 0.677534 tig0032473:+34485 None:intergenic
ACACAGTCGAACATCCGCAA+GGG 0.678137 tig0032473:-34451 Msa1449270:CDS
CAACTTTACAAGCAGGACAG+TGG 0.681325 tig0032473:-35102 Msa1449270:intron
AATGAGGATGTACCACGTGA+GGG 0.692974 tig0032473:-34029 Msa1449270:CDS
AGATCTTCTACAATGTGCTG+AGG 0.694071 tig0032473:+33533 None:intergenic
AATATCCACAGACCCTCACG+TGG 0.720615 tig0032473:+34017 None:intergenic
AAATCCTGTGACATTCTCTG+GGG 0.737625 tig0032473:-33255 Msa1449270:three_prime_UTR
AGTTGCTCCAGTGAACAAGG+AGG 0.748389 tig0032473:-34119 Msa1449270:CDS
ACATGCCACACAAATCTCGG+CGG 0.769535 tig0032473:+33878 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTACTTTGTTTTTATAT+TGG + tig0032473:35490-35509 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+TGG + tig0032473:34542-34561 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0032473:34542-34561 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + tig0032473:34542-34561 None:intergenic 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + tig0032473:34547-34566 None:intergenic 100.0%
! CCGGGGGGGGGGGGGGGGGG+GGG + tig0032473:34548-34567 None:intergenic 100.0%
! CCCCCCCCCCCCCCCCCCCC+CGG - tig0032473:34542-34561 Msa1449270:intron 100.0%
!! TCATAAAAAAATTGGATTAA+TGG - tig0032473:34137-34156 Msa1449270:CDS 15.0%
!! TATCTTTGTTAATTTAGAAA+AGG + tig0032473:34409-34428 None:intergenic 15.0%
!!! TTAACTTTTAAAAAGAAAAC+AGG + tig0032473:34596-34615 None:intergenic 15.0%
!!! TGTTTTCTTTTTAAAAGTTA+AGG - tig0032473:34595-34614 Msa1449270:intron 15.0%
!!! AACTTTATTTGTATATTTGA+TGG - tig0032473:34621-34640 Msa1449270:intron 15.0%
!!! ACTTTATTTGTATATTTGAT+GGG - tig0032473:34622-34641 Msa1449270:intron 15.0%
!! ATCAATATCAGTATATTAAT+TGG - tig0032473:34753-34772 Msa1449270:intron 15.0%
!!! AATGATACTGATTATATATA+AGG - tig0032473:34970-34989 Msa1449270:CDS 15.0%
!! ATGAAATACAGAAAATTTAT+TGG + tig0032473:36183-36202 None:intergenic 15.0%
!!! TAATCCAATTTTTTTATGAG+AGG + tig0032473:34136-34155 None:intergenic 20.0%
!!! TTTCTTTTTAAAAGTTAAGG+TGG - tig0032473:34598-34617 Msa1449270:intron 20.0%
!!! CTTTATTTGTATATTTGATG+GGG - tig0032473:34623-34642 Msa1449270:intron 20.0%
!! AAATAGATATAGAAATACCA+AGG + tig0032473:34707-34726 None:intergenic 20.0%
!! TTCTATATCTATTTATCATC+CGG - tig0032473:34713-34732 Msa1449270:intron 20.0%
!! TCAGTAATTTATGTTCTTAT+AGG + tig0032473:34852-34871 None:intergenic 20.0%
!! TATAAGAACATAAATTACTG+AGG - tig0032473:34851-34870 Msa1449270:CDS 20.0%
!! TTATATATAATCAGTATCAC+AGG + tig0032473:34922-34941 None:intergenic 20.0%
!!! TGTGATACTGATTATATATA+AGG - tig0032473:34921-34940 Msa1449270:CDS 20.0%
!! TAAGGATAGTAAAAACTATT+TGG - tig0032473:34939-34958 Msa1449270:CDS 20.0%
!! TAAGGATAGTAAAAACTATT+TGG - tig0032473:34939-34958 Msa1449270:CDS 20.0%
!! ATATTTATATTGCTTGATTG+AGG - tig0032473:35084-35103 Msa1449270:CDS 20.0%
!! TTTATAATGGTCAAAATGTT+AGG + tig0032473:35133-35152 None:intergenic 20.0%
!!! AATGAAGCAATTTTCATTTT+AGG + tig0032473:35191-35210 None:intergenic 20.0%
!!! TTTTTGTTACATAAAGTATC+TGG + tig0032473:36149-36168 None:intergenic 20.0%
!!! ATTGTTGATTTATATTGTTC+TGG + tig0032473:37061-37080 None:intergenic 20.0%
!! AATACTAGAATAACATTATG+TGG - tig0032473:37192-37211 Msa1449270:intron 20.0%
! AGTTAAGTTTACCAATATTG+TGG + tig0032473:33438-33457 None:intergenic 25.0%
! AAAACAAAGTTAACTAACCT+TGG + tig0032473:33596-33615 None:intergenic 25.0%
!!! AGAGAGGATTTTTTATTTGA+TGG - tig0032473:34081-34100 Msa1449270:CDS 25.0%
! TTGTCCTCTCATAAAAAAAT+TGG - tig0032473:34129-34148 Msa1449270:CDS 25.0%
! AGCTTGGAAAAACATAAAAA+GGG + tig0032473:34309-34328 None:intergenic 25.0%
! TGGTATTAGCAAAAAAAAAC+CGG + tig0032473:34567-34586 None:intergenic 25.0%
! AAAAAGAAAACAGGTATGTT+TGG + tig0032473:34587-34606 None:intergenic 25.0%
! ATAATGTAATTCACCAAATC+CGG + tig0032473:34735-34754 None:intergenic 25.0%
!! AGTATATTAATTGGTAGTTG+TGG - tig0032473:34762-34781 Msa1449270:intron 25.0%
! TTTAATGAAGCATGATTCTT+TGG - tig0032473:34803-34822 Msa1449270:intron 25.0%
!! TTTATGTTCTTATAGGTTGA+TGG + tig0032473:34845-34864 None:intergenic 25.0%
! GTAAAAACTATTTGGTTGAA+AGG - tig0032473:34947-34966 Msa1449270:CDS 25.0%
! GTAAAAACTATTTGGTTGAA+AGG - tig0032473:34947-34966 Msa1449270:CDS 25.0%
!!! CATTTTGACCATTATAAATC+CGG - tig0032473:35135-35154 Msa1449270:intron 25.0%
!! TTCATTGAGTTTTTGTCATT+TGG - tig0032473:35165-35184 Msa1449270:intron 25.0%
! TCTAATAACAATAAAACACG+AGG + tig0032473:35429-35448 None:intergenic 25.0%
! AACAAAACAGTTATATACAG+AGG + tig0032473:35674-35693 None:intergenic 25.0%
!! CTACACAAAATTTCATGTTT+TGG - tig0032473:36064-36083 Msa1449270:intron 25.0%
! AATACAGAAAATTTATTGGC+AGG + tig0032473:36179-36198 None:intergenic 25.0%
!! TAATTTTTCCAACATGAGTA+AGG + tig0032473:36279-36298 None:intergenic 25.0%
! AAAGTCAAAATTAATGCAGT+TGG - tig0032473:37167-37186 Msa1449270:intron 25.0%
! TTGTAGAAGATCTACAAAAT+TGG - tig0032473:37290-37309 Msa1449270:CDS 25.0%
! CAAGTAAAATATTTCCAAAC+AGG + tig0032473:37401-37420 None:intergenic 25.0%
!! TTTGGAAATATTTTACTTGC+TGG - tig0032473:37402-37421 Msa1449270:CDS 25.0%
! TTCATAATTGAGGTTAATCA+TGG + tig0032473:37451-37470 None:intergenic 25.0%
! GATTAACCTCAATTATGAAA+AGG - tig0032473:37452-37471 Msa1449270:exon 25.0%
!! TTAATCTCATTTCTAGGTAA+AGG - tig0032473:37534-37553 Msa1449270:five_prime_UTR 25.0%
TTTCGGTTATATTGTCTTTC+TGG - tig0032473:33526-33545 Msa1449270:three_prime_UTR 30.0%
! AACTTTGTTATGAGGTACTA+TGG - tig0032473:33795-33814 Msa1449270:CDS 30.0%
! ACTTTGTTATGAGGTACTAT+GGG - tig0032473:33796-33815 Msa1449270:CDS 30.0%
TATTTCCACAATACACTCTT+TGG - tig0032473:33944-33963 Msa1449270:CDS 30.0%
!!! TTCTGTTACTGTTAGTTTTC+TGG - tig0032473:33995-34014 Msa1449270:CDS 30.0%
! GAAATTTGATGATCTAAGAG+AGG - tig0032473:34065-34084 Msa1449270:CDS 30.0%
AATTGGATTAATGGAGAGAT+AGG - tig0032473:34146-34165 Msa1449270:CDS 30.0%
ACATCACAAAAATCACTCTA+GGG + tig0032473:34275-34294 None:intergenic 30.0%
TACATCACAAAAATCACTCT+AGG + tig0032473:34276-34295 None:intergenic 30.0%
CAGCTTGGAAAAACATAAAA+AGG + tig0032473:34310-34329 None:intergenic 30.0%
!! ACGCTTTAGGAAAAATCAAA+GGG + tig0032473:34342-34361 None:intergenic 30.0%
TGTGTGATTGAAATGTTGTA+TGG - tig0032473:34454-34473 Msa1449270:CDS 30.0%
TATTAGCAAAAAAAAACCGG+GGG + tig0032473:34564-34583 None:intergenic 30.0%
GTATTAGCAAAAAAAAACCG+GGG + tig0032473:34565-34584 None:intergenic 30.0%
GGTATTAGCAAAAAAAAACC+GGG + tig0032473:34566-34585 None:intergenic 30.0%
! TTTTAGCAGAATCATGTCAT+TGG - tig0032473:34647-34666 Msa1449270:intron 30.0%
GAAATTGTTCTTTAACTCCT+TGG - tig0032473:34687-34706 Msa1449270:intron 30.0%
ATCTATTTATCATCCGGATT+TGG - tig0032473:34719-34738 Msa1449270:intron 30.0%
ACTATTTGGTTGAAAGGAAT+TGG - tig0032473:34953-34972 Msa1449270:CDS 30.0%
AATATGCCAGAATTTGTATC+TGG + tig0032473:35069-35088 None:intergenic 30.0%
TTTATATTGCTTGATTGAGG+TGG - tig0032473:35087-35106 Msa1449270:CDS 30.0%
TTATATTGCTTGATTGAGGT+GGG - tig0032473:35088-35107 Msa1449270:CDS 30.0%
AAACTTGACCGGATTTATAA+TGG + tig0032473:35146-35165 None:intergenic 30.0%
AAACTCAATGAAAACTTGAC+CGG + tig0032473:35157-35176 None:intergenic 30.0%
TTCTAATAGCCAGTTTATCA+TGG + tig0032473:35271-35290 None:intergenic 30.0%
CAAATTGTATCCATTCTAGA+AGG + tig0032473:35625-35644 None:intergenic 30.0%
!! CTTCTAGAATGGATACAATT+TGG - tig0032473:35623-35642 Msa1449270:intron 30.0%
TTATACACATCATATGCTTC+TGG + tig0032473:35933-35952 None:intergenic 30.0%
CATATGATGTGTATAATGCT+AGG - tig0032473:35937-35956 Msa1449270:intron 30.0%
!!! ATGTTTTGGTTTTGATTGAG+TGG - tig0032473:36078-36097 Msa1449270:intron 30.0%
!!! TCAAAGCACATTTTTTGAGT+AGG + tig0032473:36253-36272 None:intergenic 30.0%
TCATGTTGGAAAAATTATGC+AGG - tig0032473:36282-36301 Msa1449270:intron 30.0%
AACTCTTAAAGAAGCTGAAA+TGG - tig0032473:37105-37124 Msa1449270:intron 30.0%
! ATTATGTGGTTAGTTCTTGT+TGG - tig0032473:37206-37225 Msa1449270:intron 30.0%
! TTATGTGGTTAGTTCTTGTT+GGG - tig0032473:37207-37226 Msa1449270:intron 30.0%
!! ATATTTTACTTGCTGGACAT+TGG - tig0032473:37409-37428 Msa1449270:CDS 30.0%
!!! TACTAGCCTTTTCATAATTG+AGG + tig0032473:37461-37480 None:intergenic 30.0%
! TGTCATACTTTTACAACAAG+TGG + tig0032473:37509-37528 None:intergenic 30.0%
! CTTGTTGTAAAAGTATGACA+TGG - tig0032473:37509-37528 Msa1449270:five_prime_UTR 30.0%
!! ATGGCTTTAATCTCATTTCT+AGG - tig0032473:37528-37547 Msa1449270:five_prime_UTR 30.0%
!!! GGATGGATAGAGTTTTGTTT+GGG + tig0032473:33272-33291 None:intergenic 35.0%
!!! TGGATGGATAGAGTTTTGTT+TGG + tig0032473:33273-33292 None:intergenic 35.0%
!!! AGAACTGGTTTTGTTGTGTT+GGG + tig0032473:33301-33320 None:intergenic 35.0%
! ACGAATAGGGAAAGAGTTTT+GGG + tig0032473:33332-33351 None:intergenic 35.0%
CATATGGAACTACACGAATA+GGG + tig0032473:33345-33364 None:intergenic 35.0%
ACCAAACACAACCACAATAT+TGG - tig0032473:33424-33443 Msa1449270:three_prime_UTR 35.0%
ACCAATATTGTGGTTGTGTT+TGG + tig0032473:33428-33447 None:intergenic 35.0%
! ACATTTTCGCGTCGAAAAAT+TGG - tig0032473:33487-33506 Msa1449270:three_prime_UTR 35.0%
! GATACGGTCATAGATGTTTT+CGG - tig0032473:33509-33528 Msa1449270:three_prime_UTR 35.0%
GGTTATATTGTCTTTCTGGA+GGG - tig0032473:33530-33549 Msa1449270:three_prime_UTR 35.0%
! ACGACGCAATAAAGGTTTTA+AGG + tig0032473:33677-33696 None:intergenic 35.0%
ACCCAAATGTCACAATTAAG+CGG + tig0032473:33707-33726 None:intergenic 35.0%
!! TCGTATTTCTAGACAATGTG+GGG + tig0032473:33758-33777 None:intergenic 35.0%
!! GTCGTATTTCTAGACAATGT+GGG + tig0032473:33759-33778 None:intergenic 35.0%
!! TGTCGTATTTCTAGACAATG+TGG + tig0032473:33760-33779 None:intergenic 35.0%
! CTTTGTTATGAGGTACTATG+GGG - tig0032473:33797-33816 Msa1449270:CDS 35.0%
AGAATCGTTATTGTTAGTCG+CGG - tig0032473:33838-33857 Msa1449270:CDS 35.0%
GAGTGTATTGTGGAAATAGA+AGG + tig0032473:33942-33961 None:intergenic 35.0%
! ATTTCCCTTCTTTTGCTCTA+CGG + tig0032473:34050-34069 None:intergenic 35.0%
! TTATCACACACTAGTCTCAT+GGG - tig0032473:34184-34203 Msa1449270:CDS 35.0%
! TATGTTTTTCCAAGCTGAGT+TGG - tig0032473:34313-34332 Msa1449270:CDS 35.0%
!! CACGCTTTAGGAAAAATCAA+AGG + tig0032473:34343-34362 None:intergenic 35.0%
! TTTTTCCTAAAGCGTGTGTT+TGG - tig0032473:34347-34366 Msa1449270:CDS 35.0%
!!! AGGGTTTTGGAAGTATATTG+GGG + tig0032473:34515-34534 None:intergenic 35.0%
!!! GAGGGTTTTGGAAGTATATT+GGG + tig0032473:34516-34535 None:intergenic 35.0%
ATTAGCAAAAAAAAACCGGG+GGG + tig0032473:34563-34582 None:intergenic 35.0%
!! TCTTATAGGTTGATGGTTTC+CGG + tig0032473:34838-34857 None:intergenic 35.0%
GAGATACCAGATACAAATTC+TGG - tig0032473:35060-35079 Msa1449270:CDS 35.0%
TATATTGCTTGATTGAGGTG+GGG - tig0032473:35089-35108 Msa1449270:CDS 35.0%
GCAGATGTAGGGAAAAAAAA+AGG - tig0032473:35327-35346 Msa1449270:intron 35.0%
ATTCCATCACATGTCATTAG+AGG - tig0032473:35370-35389 Msa1449270:intron 35.0%
GGTTGTGTTTATAAGCAGTT+CGG + tig0032473:35469-35488 None:intergenic 35.0%
TAGAAGGCTAATTCTAGTGA+GGG + tig0032473:35609-35628 None:intergenic 35.0%
!! CTAGAATTAGCCTTCTAGAA+TGG - tig0032473:35612-35631 Msa1449270:intron 35.0%
TGCTTGTAAAGTTGAGATGA+AGG + tig0032473:35705-35724 None:intergenic 35.0%
TTCATCTCAACTTTACAAGC+AGG - tig0032473:35704-35723 Msa1449270:intron 35.0%
!!! CTCAAAATGCTGATTTTCCT+CGG - tig0032473:35757-35776 Msa1449270:intron 35.0%
TTCACTAGCAATCCATTCTT+TGG + tig0032473:35900-35919 None:intergenic 35.0%
CATCATATGCTTCTGGTATA+AGG + tig0032473:35926-35945 None:intergenic 35.0%
TCAATAGTATGCTAGAGGAT+AGG + tig0032473:36040-36059 None:intergenic 35.0%
GTTTGTCAATAGTATGCTAG+AGG + tig0032473:36045-36064 None:intergenic 35.0%
!!! AAGCACATTTTTTGAGTAGG+AGG + tig0032473:36250-36269 None:intergenic 35.0%
TTTGATGTCCTTACTCATGT+TGG - tig0032473:36268-36287 Msa1449270:intron 35.0%
TGTTGGAAAAATTATGCAGG+TGG - tig0032473:36285-36304 Msa1449270:intron 35.0%
CATCCATTCAAGTCATGTAA+AGG - tig0032473:36338-36357 Msa1449270:intron 35.0%
GTACCTTTACATGACTTGAA+TGG + tig0032473:36344-36363 None:intergenic 35.0%
AGAAAGCCAATAATCCGTAT+TGG - tig0032473:36572-36591 Msa1449270:intron 35.0%
GAAAGCCAATAATCCGTATT+GGG - tig0032473:36573-36592 Msa1449270:intron 35.0%
! TTCTTCCCAATACGGATTAT+TGG + tig0032473:36581-36600 None:intergenic 35.0%
AATAATCCGTATTGGGAAGA+AGG - tig0032473:36580-36599 Msa1449270:intron 35.0%
CAAATTCCTTCTTCCCAATA+CGG + tig0032473:36589-36608 None:intergenic 35.0%
TATTGGGAAGAAGGAATTTG+TGG - tig0032473:36589-36608 Msa1449270:intron 35.0%
ATTATTTCCTCCTTGTTCAC+TGG + tig0032473:36704-36723 None:intergenic 35.0%
TATTGCCCTGAAATTCATGT+TGG - tig0032473:36815-36834 Msa1449270:intron 35.0%
CGAGAGCTTAAGAATTTCTA+CGG - tig0032473:36986-37005 Msa1449270:intron 35.0%
! CAGCTTCTTTAAGAGTTGAA+GGG + tig0032473:37102-37121 None:intergenic 35.0%
! TCAGCTTCTTTAAGAGTTGA+AGG + tig0032473:37103-37122 None:intergenic 35.0%
! TATGTGGTTAGTTCTTGTTG+GGG - tig0032473:37208-37227 Msa1449270:intron 35.0%
! AGATCTACAAAATTGGTGTC+AGG - tig0032473:37297-37316 Msa1449270:CDS 35.0%
!! GTCCTGTCAACTTTTTAAGA+AGG - tig0032473:37364-37383 Msa1449270:CDS 35.0%
AGCCTTCTTAAAAAGTTGAC+AGG + tig0032473:37369-37388 None:intergenic 35.0%
!! GTCAACTTTTTAAGAAGGCT+AGG - tig0032473:37369-37388 Msa1449270:CDS 35.0%
!! AACTTTTTAAGAAGGCTAGG+AGG - tig0032473:37372-37391 Msa1449270:CDS 35.0%
!! ACTTTTTAAGAAGGCTAGGA+GGG - tig0032473:37373-37392 Msa1449270:CDS 35.0%
TAAATCCTGTGACATTCTCT+GGG - tig0032473:37557-37576 Msa1449270:five_prime_UTR 35.0%
!! TTTTGTTGTGTTGGGAGGAA+TGG + tig0032473:33293-33312 None:intergenic 40.0%
!!! CAGAACTGGTTTTGTTGTGT+TGG + tig0032473:33302-33321 None:intergenic 40.0%
!!! TTTTGGGTTTCTGACAGAAC+TGG + tig0032473:33316-33335 None:intergenic 40.0%
! CACGAATAGGGAAAGAGTTT+TGG + tig0032473:33333-33352 None:intergenic 40.0%
GCATATGGAACTACACGAAT+AGG + tig0032473:33346-33365 None:intergenic 40.0%
GTCTCTCTCTCAAACACAAT+CGG - tig0032473:33391-33410 Msa1449270:three_prime_UTR 40.0%
TCGCGTCGAAAAATTGGATA+CGG - tig0032473:33493-33512 Msa1449270:three_prime_UTR 40.0%
CGGTTATATTGTCTTTCTGG+AGG - tig0032473:33529-33548 Msa1449270:three_prime_UTR 40.0%
TGATTATGATGCAGCTTCCA+AGG - tig0032473:33576-33595 Msa1449270:three_prime_UTR 40.0%
ATGTCACAATTAAGCGGCTA+GGG + tig0032473:33701-33720 None:intergenic 40.0%
AATGTCACAATTAAGCGGCT+AGG + tig0032473:33702-33721 None:intergenic 40.0%
AGCCGCTTAATTGTGACATT+TGG - tig0032473:33702-33721 Msa1449270:CDS 40.0%
GCCGCTTAATTGTGACATTT+GGG - tig0032473:33703-33722 Msa1449270:CDS 40.0%
! TTTGTTGTGTTGGGTGTGAA+GGG - tig0032473:33731-33750 Msa1449270:CDS 40.0%
AATACGACATGTCTAGTGTG+AGG - tig0032473:33771-33790 Msa1449270:CDS 40.0%
ATACGACATGTCTAGTGTGA+GGG - tig0032473:33772-33791 Msa1449270:CDS 40.0%
! TGTGAGGGAACTTTGTTATG+AGG - tig0032473:33787-33806 Msa1449270:CDS 40.0%
! GGGAATTGCATTTTCTCTGT+TGG - tig0032473:33864-33883 Msa1449270:CDS 40.0%
TCCACAATACACTCTTTGGT+TGG - tig0032473:33948-33967 Msa1449270:CDS 40.0%
TGATCCGTAGAGCAAAAGAA+GGG - tig0032473:34043-34062 Msa1449270:CDS 40.0%
! GTTATCACACACTAGTCTCA+TGG - tig0032473:34183-34202 Msa1449270:CDS 40.0%
! TATCACACACTAGTCTCATG+GGG - tig0032473:34185-34204 Msa1449270:CDS 40.0%
! TGTGTTTGGATGGAGGATTT+TGG - tig0032473:34361-34380 Msa1449270:CDS 40.0%
!!! GGAGGGTTTTGGAAGTATAT+TGG + tig0032473:34517-34536 None:intergenic 40.0%
TTAGCAAAAAAAAACCGGGG+GGG + tig0032473:34562-34581 None:intergenic 40.0%
! GATTCTTTGGTAACTCGATC+CGG - tig0032473:34816-34835 Msa1449270:intron 40.0%
CATGACAAGCCATGATAAAC+TGG - tig0032473:35259-35278 Msa1449270:intron 40.0%
CTACATCTGCAATATTGCAC+GGG + tig0032473:35317-35336 None:intergenic 40.0%
CCTACATCTGCAATATTGCA+CGG + tig0032473:35318-35337 None:intergenic 40.0%
CGTGCAATATTGCAGATGTA+GGG - tig0032473:35316-35335 Msa1449270:intron 40.0%
CTAGAAGGCTAATTCTAGTG+AGG + tig0032473:35610-35629 None:intergenic 40.0%
! CGAGGAAAATCAGCATTTTG+AGG + tig0032473:35759-35778 None:intergenic 40.0%
TCAACAATGGGAACTGGAAA+AGG + tig0032473:35807-35826 None:intergenic 40.0%
TTCCCATTGTTGAACTACGA+CGG - tig0032473:35814-35833 Msa1449270:intron 40.0%
AGAAGATGAAAGATGAGCCA+AGG - tig0032473:35856-35875 Msa1449270:intron 40.0%
TAATTACCCACAAGCATGCA+CGG + tig0032473:36006-36025 None:intergenic 40.0%
TAGTATGCTAGAGGATAGGA+AGG + tig0032473:36036-36055 None:intergenic 40.0%
!! ATACATACCGCTGTTGTTTC+TGG - tig0032473:36109-36128 Msa1449270:intron 40.0%
TATGAAGCCAGAAACAACAG+CGG + tig0032473:36119-36138 None:intergenic 40.0%
ACTTGAATGGATGTCCAACA+GGG + tig0032473:36331-36350 None:intergenic 40.0%
TGAATGGACAAATGCACATG+TGG - tig0032473:36391-36410 Msa1449270:intron 40.0%
TAGAGGTGAAATGCGTCAAT+CGG + tig0032473:36431-36450 None:intergenic 40.0%
TTTCACCTCTATGATCGTCT+TGG - tig0032473:36440-36459 Msa1449270:intron 40.0%
TCTATGATCGTCTTGGAAAG+CGG - tig0032473:36447-36466 Msa1449270:intron 40.0%
TTCGAGAGTTTCCCACAAAA+AGG - tig0032473:36546-36565 Msa1449270:intron 40.0%
! GGCTTTCTTCTCCTTTTTGT+GGG + tig0032473:36560-36579 None:intergenic 40.0%
! TGGCTTTCTTCTCCTTTTTG+TGG + tig0032473:36561-36580 None:intergenic 40.0%
!! ACCGTTGATAGCTGAAATAC+CGG - tig0032473:36661-36680 Msa1449270:intron 40.0%
TCCGGTATTTCAGCTATCAA+CGG + tig0032473:36665-36684 None:intergenic 40.0%
GGAGCAACTATATCTGAATC+CGG + tig0032473:36683-36702 None:intergenic 40.0%
TATAGTTGCTCCAGTGAACA+AGG - tig0032473:36691-36710 Msa1449270:intron 40.0%
! GTACATCCTCATTAGTCTCT+TGG + tig0032473:36777-36796 None:intergenic 40.0%
GGCACAAAGCTCAAAATTGT+GGG - tig0032473:36846-36865 Msa1449270:intron 40.0%
GCACAAAGCTCAAAATTGTG+GGG - tig0032473:36847-36866 Msa1449270:intron 40.0%
ACAAACACCAACAACGCAAT+GGG - tig0032473:36873-36892 Msa1449270:intron 40.0%
TGGCATGTTCCTGATGTAAA+CGG - tig0032473:36950-36969 Msa1449270:intron 40.0%
TTCTTAAGCTCTCGTTCTAG+TGG + tig0032473:36980-36999 None:intergenic 40.0%
GCTTAAGAATTTCTACGGAC+AGG - tig0032473:36991-37010 Msa1449270:intron 40.0%
AGATCTTCTACAATGTGCTG+AGG + tig0032473:37283-37302 None:intergenic 40.0%
!! CAAAATTGGTGTCAGGTTGA+TGG - tig0032473:37304-37323 Msa1449270:CDS 40.0%
GTAAATCCTGTGACATTCTC+TGG - tig0032473:37556-37575 Msa1449270:five_prime_UTR 40.0%
AAATCCTGTGACATTCTCTG+GGG - tig0032473:37558-37577 Msa1449270:five_prime_UTR 40.0%
!!! ACTGGTTTTGTTGTGTTGGG+AGG + tig0032473:33298-33317 None:intergenic 45.0%
GTGTAGTTCCATATGCGTGT+GGG - tig0032473:33350-33369 Msa1449270:three_prime_UTR 45.0%
! TTGTCTTTCTGGAGGGAGAA+TGG - tig0032473:33537-33556 Msa1449270:three_prime_UTR 45.0%
TGTCACAATTAAGCGGCTAG+GGG + tig0032473:33700-33719 None:intergenic 45.0%
! TTGGGTTGCCTTTGTTGTGT+TGG - tig0032473:33721-33740 Msa1449270:CDS 45.0%
! TGGGTTGCCTTTGTTGTGTT+GGG - tig0032473:33722-33741 Msa1449270:CDS 45.0%
CTTCACACCCAACACAACAA+AGG + tig0032473:33732-33751 None:intergenic 45.0%
! CTTTGTTGTGTTGGGTGTGA+AGG - tig0032473:33730-33749 Msa1449270:CDS 45.0%
TTGTTGTGTTGGGTGTGAAG+GGG - tig0032473:33732-33751 Msa1449270:CDS 45.0%
! CATTTTCTCTGTTGGAGCTC+AGG - tig0032473:33872-33891 Msa1449270:CDS 45.0%
!! ATAGAAGGAAAAGCGCCGAA+GGG + tig0032473:33927-33946 None:intergenic 45.0%
!! AATAGAAGGAAAAGCGCCGA+AGG + tig0032473:33928-33947 None:intergenic 45.0%
! GCCAACCAAAGAGTGTATTG+TGG + tig0032473:33952-33971 None:intergenic 45.0%
CTGATCCGTAGAGCAAAAGA+AGG - tig0032473:34042-34061 Msa1449270:CDS 45.0%
! TAGCCACAAGAGTGTAGATG+TGG - tig0032473:34243-34262 Msa1449270:CDS 45.0%
! AGCCACAAGAGTGTAGATGT+GGG - tig0032473:34244-34263 Msa1449270:CDS 45.0%
AAAGGGTAACCAACTCAGCT+TGG + tig0032473:34325-34344 None:intergenic 45.0%
TCCTAAAGCGTGTGTTTGGA+TGG - tig0032473:34351-34370 Msa1449270:CDS 45.0%
TCCATCCAAACACACGCTTT+AGG + tig0032473:34355-34374 None:intergenic 45.0%
TAAAGCGTGTGTTTGGATGG+AGG - tig0032473:34354-34373 Msa1449270:CDS 45.0%
!! TTGGATGGAGGATTTTGGAG+AGG - tig0032473:34366-34385 Msa1449270:CDS 45.0%
TAGCAAAAAAAAACCGGGGG+GGG + tig0032473:34561-34580 None:intergenic 45.0%
CTGAGGCAGCTATGAAATTG+AGG - tig0032473:34868-34887 Msa1449270:CDS 45.0%
CCGTGCAATATTGCAGATGT+AGG - tig0032473:35315-35334 Msa1449270:intron 45.0%
CCTCCTCTAATGACATGTGA+TGG + tig0032473:35376-35395 None:intergenic 45.0%
CCATCACATGTCATTAGAGG+AGG - tig0032473:35373-35392 Msa1449270:intron 45.0%
! TCGTTGTGCCTTCAGAGTTT+TGG - tig0032473:35578-35597 Msa1449270:intron 45.0%
CAACTTTACAAGCAGGACAG+TGG - tig0032473:35711-35730 Msa1449270:intron 45.0%
TCCTCGGCATTATTCGAGAA+AGG - tig0032473:35773-35792 Msa1449270:intron 45.0%
TCCTTTCTCGAATAATGCCG+AGG + tig0032473:35777-35796 None:intergenic 45.0%
CGTAGTTCAACAATGGGAAC+TGG + tig0032473:35813-35832 None:intergenic 45.0%
TCCCATTGTTGAACTACGAC+GGG - tig0032473:35815-35834 Msa1449270:intron 45.0%
AATTACCCACAAGCATGCAC+GGG + tig0032473:36005-36024 None:intergenic 45.0%
TGGTGCAGTGAAATCCATGT+AGG - tig0032473:36305-36324 Msa1449270:intron 45.0%
GACTTGAATGGATGTCCAAC+AGG + tig0032473:36332-36351 None:intergenic 45.0%
TCCATTCATGAATGCCCTTG+CGG + tig0032473:36379-36398 None:intergenic 45.0%
GCTTTCCAAGACGATCATAG+AGG + tig0032473:36448-36467 None:intergenic 45.0%
AACAGAGATTCTCCATCCCT+CGG - tig0032473:36480-36499 Msa1449270:intron 45.0%
! ACGGTTGTGTAGGGTTTTCT+GGG + tig0032473:36646-36665 None:intergenic 45.0%
! AACGGTTGTGTAGGGTTTTC+TGG + tig0032473:36647-36666 None:intergenic 45.0%
CAGCTATCAACGGTTGTGTA+GGG + tig0032473:36655-36674 None:intergenic 45.0%
TCAGCTATCAACGGTTGTGT+AGG + tig0032473:36656-36675 None:intergenic 45.0%
GGAAATAATCCACCTTGCTG+AGG - tig0032473:36715-36734 Msa1449270:intron 45.0%
TGAGGAAACACTCCAAGCAT+GGG - tig0032473:36733-36752 Msa1449270:intron 45.0%
TCCAAGCATGGGAACAAATG+AGG - tig0032473:36744-36763 Msa1449270:intron 45.0%
TCCTCATTTGTTCCCATGCT+TGG + tig0032473:36748-36767 None:intergenic 45.0%
TAATGAGGATGTACCACGTG+AGG - tig0032473:36783-36802 Msa1449270:intron 45.0%
AATGAGGATGTACCACGTGA+GGG - tig0032473:36784-36803 Msa1449270:intron 45.0%
TGGGGCCAACATGAATTTCA+GGG + tig0032473:36823-36842 None:intergenic 45.0%
GGGCACAAAGCTCAAAATTG+TGG - tig0032473:36845-36864 Msa1449270:intron 45.0%
CACAAACACCAACAACGCAA+TGG - tig0032473:36872-36891 Msa1449270:intron 45.0%
GGAACATGCCACACAAATCT+CGG + tig0032473:36941-36960 None:intergenic 45.0%
TTAAGCTCTCGTTCTAGTGG+TGG + tig0032473:36977-36996 None:intergenic 45.0%
! TGTGGTGGAAATGTGCATTC+AGG - tig0032473:37021-37040 Msa1449270:intron 45.0%
TCAACAATGCGCCTTGATGT+CGG - tig0032473:37073-37092 Msa1449270:intron 45.0%
GACATGATTGCAAGGAAGCT+TGG + tig0032473:37347-37366 None:intergenic 45.0%
GTTGACAGGACATGATTGCA+AGG + tig0032473:37355-37374 None:intergenic 45.0%
GTTGTGTTGGGAGGAATGGA+TGG + tig0032473:33289-33308 None:intergenic 50.0%
CGTGTAGTTCCATATGCGTG+TGG - tig0032473:33349-33368 Msa1449270:three_prime_UTR 50.0%
! ATTGGCTTCCCACACGCATA+TGG + tig0032473:33361-33380 None:intergenic 50.0%
ATATGCGTGTGGGAAGCCAA+TGG - tig0032473:33360-33379 Msa1449270:three_prime_UTR 50.0%
TGGGAAGCCAATGGCATCAA+CGG - tig0032473:33369-33388 Msa1449270:three_prime_UTR 50.0%
AGAGAGACCGTTGATGCCAT+TGG + tig0032473:33379-33398 None:intergenic 50.0%
AGGTACTATGGGGAGAGAGT+GGG - tig0032473:33807-33826 Msa1449270:CDS 50.0%
TCGTTATTGTTAGTCGCGGC+TGG - tig0032473:33842-33861 Msa1449270:CDS 50.0%
CGTTATTGTTAGTCGCGGCT+GGG - tig0032473:33843-33862 Msa1449270:CDS 50.0%
GTTATTGTTAGTCGCGGCTG+GGG - tig0032473:33844-33863 Msa1449270:CDS 50.0%
CAGTAGGCCTATACACCCTT+CGG - tig0032473:33909-33928 Msa1449270:CDS 50.0%
!! AAAAGCGCCGAAGGGTGTAT+AGG + tig0032473:33919-33938 None:intergenic 50.0%
! GCCACAAGAGTGTAGATGTG+GGG - tig0032473:34245-34264 Msa1449270:CDS 50.0%
ACCCCACATCTACACTCTTG+TGG + tig0032473:34249-34268 None:intergenic 50.0%
!! AGGATTTTGGAGAGGTGCGT+AGG - tig0032473:34374-34393 Msa1449270:CDS 50.0%
AGCAAAAAAAAACCGGGGGG+GGG + tig0032473:34560-34579 None:intergenic 50.0%
GGGCAACACCAAAACTCTGA+AGG + tig0032473:35589-35608 None:intergenic 50.0%
GCCCGTCGTAGTTCAACAAT+GGG + tig0032473:35819-35838 None:intergenic 50.0%
TGCCCGTCGTAGTTCAACAA+TGG + tig0032473:35820-35839 None:intergenic 50.0%
GCCAAGGAGAAAACCAATGC+CGG - tig0032473:35872-35891 Msa1449270:intron 50.0%
AGCAATCCATTCTTTGGCGC+CGG + tig0032473:35894-35913 None:intergenic 50.0%
TAGTACCCGTGCATGCTTGT+GGG - tig0032473:35997-36016 Msa1449270:intron 50.0%
GAAATCCATGTAGGCCCTGT+TGG - tig0032473:36314-36333 Msa1449270:intron 50.0%
TACACAGTCGAACATCCGCA+AGG - tig0032473:36361-36380 Msa1449270:intron 50.0%
ACACAGTCGAACATCCGCAA+GGG - tig0032473:36362-36381 Msa1449270:intron 50.0%
!! TCCGCAAGGGCATTCATGAA+TGG - tig0032473:36375-36394 Msa1449270:intron 50.0%
GTTGAGCTCTGCATTCAAGC+TGG - tig0032473:36515-36534 Msa1449270:intron 50.0%
!!! GGGTTTTCTGGGACTTCATC+TGG + tig0032473:36635-36654 None:intergenic 50.0%
AGTTGCTCCAGTGAACAAGG+AGG - tig0032473:36694-36713 Msa1449270:intron 50.0%
! CTTGGAGTGTTTCCTCAGCA+AGG + tig0032473:36730-36749 None:intergenic 50.0%
CTGAGGAAACACTCCAAGCA+TGG - tig0032473:36732-36751 Msa1449270:intron 50.0%
GCATGGGAACAAATGAGGAG+AGG - tig0032473:36749-36768 Msa1449270:intron 50.0%
AATATCCACAGACCCTCACG+TGG + tig0032473:36799-36818 None:intergenic 50.0%
CTGGGGCCAACATGAATTTC+AGG + tig0032473:36824-36843 None:intergenic 50.0%
GAAATTCATGTTGGCCCCAG+CGG - tig0032473:36824-36843 Msa1449270:intron 50.0%
AAATTCATGTTGGCCCCAGC+GGG - tig0032473:36825-36844 Msa1449270:intron 50.0%
!! TTTTGAGCTTTGTGCCCGCT+GGG + tig0032473:36842-36861 None:intergenic 50.0%
!! ATTTTGAGCTTTGTGCCCGC+TGG + tig0032473:36843-36862 None:intergenic 50.0%
TGATACCGCCGAGATTTGTG+TGG - tig0032473:36930-36949 Msa1449270:intron 50.0%
ACATGCCACACAAATCTCGG+CGG + tig0032473:36938-36957 None:intergenic 50.0%
AGTGGTGGTCCGTTTACATC+AGG + tig0032473:36962-36981 None:intergenic 50.0%
GAATTTCTACGGACAGGCTC+CGG - tig0032473:36997-37016 Msa1449270:intron 50.0%
ATGCACATTTCCACCACAGC+CGG + tig0032473:37019-37038 None:intergenic 50.0%
GTGGAAATGTGCATTCAGGC+TGG - tig0032473:37025-37044 Msa1449270:intron 50.0%
CAACAATGCGCCTTGATGTC+GGG - tig0032473:37074-37093 Msa1449270:intron 50.0%
TTGAAGGGATCCCGACATCA+AGG + tig0032473:37087-37106 None:intergenic 50.0%
AAAGCCCCAGAGAATGTCAC+AGG + tig0032473:37565-37584 None:intergenic 50.0%
GCTAGGGGACGACGCAATAA+AGG + tig0032473:33685-33704 None:intergenic 55.0%
! GAGGTACTATGGGGAGAGAG+TGG - tig0032473:33806-33825 Msa1449270:CDS 55.0%
GGTACTATGGGGAGAGAGTG+GGG - tig0032473:33808-33827 Msa1449270:CDS 55.0%
GGATCAGCTCTGTGGACAGT+AGG - tig0032473:33893-33912 Msa1449270:CDS 55.0%
AAAAAAAAACCGGGGGGGGG+GGG + tig0032473:34557-34576 None:intergenic 55.0%
CAAAAAAAAACCGGGGGGGG+GGG + tig0032473:34558-34577 None:intergenic 55.0%
GCAAAAAAAAACCGGGGGGG+GGG + tig0032473:34559-34578 None:intergenic 55.0%
TTGAACTACGACGGGCAGCT+AGG - tig0032473:35823-35842 Msa1449270:intron 55.0%
TGAACTACGACGGGCAGCTA+GGG - tig0032473:35824-35843 Msa1449270:intron 55.0%
!!! GCCGGCATTGGTTTTCTCCT+TGG + tig0032473:35876-35895 None:intergenic 55.0%
GTAGTACCCGTGCATGCTTG+TGG - tig0032473:35996-36015 Msa1449270:intron 55.0%
GATGTCCAACAGGGCCTACA+TGG + tig0032473:36322-36341 None:intergenic 55.0%
CAACCACTGCTGGAATCCGA+GGG + tig0032473:36499-36518 None:intergenic 55.0%
TCAACCACTGCTGGAATCCG+AGG + tig0032473:36500-36519 None:intergenic 55.0%
ATGCAGAGCTCAACCACTGC+TGG + tig0032473:36509-36528 None:intergenic 55.0%
! GGAGTGTTTCCTCAGCAAGG+TGG + tig0032473:36727-36746 None:intergenic 55.0%
! GAGGCGCCAAGAGACTAATG+AGG - tig0032473:36768-36787 Msa1449270:intron 55.0%
ATGTACCACGTGAGGGTCTG+TGG - tig0032473:36791-36810 Msa1449270:intron 55.0%
! TTTGAGCTTTGTGCCCGCTG+GGG + tig0032473:36841-36860 None:intergenic 55.0%
CATGCTGCCCATTGCGTTGT+TGG + tig0032473:36883-36902 None:intergenic 55.0%
CAACAACGCAATGGGCAGCA+TGG - tig0032473:36881-36900 Msa1449270:intron 55.0%
AACGCAATGGGCAGCATGGT+TGG - tig0032473:36885-36904 Msa1449270:intron 55.0%
!! AGGCTAGGAGGGTACCTGTT+TGG - tig0032473:37384-37403 Msa1449270:CDS 55.0%
GGAGCTCAGGATCAGCTCTG+TGG - tig0032473:33885-33904 Msa1449270:CDS 60.0%
AAAAAAAACCGGGGGGGGGG+GGG + tig0032473:34556-34575 None:intergenic 60.0%
!! CCATTCTTTGGCGCCGGCAT+TGG + tig0032473:35888-35907 None:intergenic 60.0%
CCAATGCCGGCGCCAAAGAA+TGG - tig0032473:35885-35904 Msa1449270:intron 60.0%
CACTGCTGGAATCCGAGGGA+TGG + tig0032473:36495-36514 None:intergenic 60.0%
CATCCCTCGGATTCCAGCAG+TGG - tig0032473:36493-36512 Msa1449270:intron 60.0%
! GGGGGGTGGATGGAGGGTTT+TGG + tig0032473:34528-34547 None:intergenic 65.0%
AAAAAAACCGGGGGGGGGGG+GGG + tig0032473:34555-34574 None:intergenic 65.0%
TACGACGGGCAGCTAGGGAG+AGG - tig0032473:35829-35848 Msa1449270:intron 65.0%
AAAAAACCGGGGGGGGGGGG+GGG + tig0032473:34554-34573 None:intergenic 70.0%
CTACGGACAGGCTCCGGCTG+TGG - tig0032473:37003-37022 Msa1449270:intron 70.0%
AAAAACCGGGGGGGGGGGGG+GGG + tig0032473:34553-34572 None:intergenic 75.0%
CGGACAGGCTCCGGCTGTGG+TGG - tig0032473:37006-37025 Msa1449270:intron 75.0%
! GGGGGGGGGGGGTGGATGGA+GGG + tig0032473:34534-34553 None:intergenic 80.0%
! AAAACCGGGGGGGGGGGGGG+GGG + tig0032473:34552-34571 None:intergenic 80.0%
! GGGGGGGGGGGGGTGGATGG+AGG + tig0032473:34535-34554 None:intergenic 85.0%
! AAACCGGGGGGGGGGGGGGG+GGG + tig0032473:34551-34570 None:intergenic 85.0%
! GGGGGGGGGGGGGGGGTGGA+TGG + tig0032473:34538-34557 None:intergenic 90.0%
! AACCGGGGGGGGGGGGGGGG+GGG + tig0032473:34550-34569 None:intergenic 90.0%
! ACCGGGGGGGGGGGGGGGGG+GGG + tig0032473:34549-34568 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
tig0032473 gene 33245 37590 33245 ID=Msa1449270;Name=Msa1449270
tig0032473 mRNA 33245 37590 33245 ID=Msa1449270-mRNA-1;Parent=Msa1449270;Name=Msa1449270-mRNA-1;_AED=0.04;_eAED=0.04;_QI=134|1|1|1|1|1|3|455|447
tig0032473 exon 33245 34531 33245 ID=Msa1449270-mRNA-1:exon:16877;Parent=Msa1449270-mRNA-1
tig0032473 exon 34817 35109 34817 ID=Msa1449270-mRNA-1:exon:16876;Parent=Msa1449270-mRNA-1
tig0032473 exon 37238 37590 37238 ID=Msa1449270-mRNA-1:exon:16875;Parent=Msa1449270-mRNA-1
tig0032473 five_prime_UTR 37457 37590 37457 ID=Msa1449270-mRNA-1:five_prime_utr;Parent=Msa1449270-mRNA-1
tig0032473 CDS 37238 37456 37238 ID=Msa1449270-mRNA-1:cds;Parent=Msa1449270-mRNA-1
tig0032473 CDS 34817 35109 34817 ID=Msa1449270-mRNA-1:cds;Parent=Msa1449270-mRNA-1
tig0032473 CDS 33700 34531 33700 ID=Msa1449270-mRNA-1:cds;Parent=Msa1449270-mRNA-1
tig0032473 three_prime_UTR 33245 33699 33245 ID=Msa1449270-mRNA-1:three_prime_utr;Parent=Msa1449270-mRNA-1
Gene Sequence

>Msa1449270

ATGGCATCAACGGTCTCTCTCTCAAACACAATCGGATTCTGTTACACCAAACACAACCACAATATTGGTAAACTTAACTACAATTCAAAAAATATAGTTCAAATCAACACATTTTCGCGTCGAAAAATTGGATACGGTCATAGATGTTTTCGGTTATATTGTCTTTCTGGAGGGAGAATGGAAAACAACGATAAAAGTGATTATGATGCAGCTTCCAAGGACAGTGGCAGTAAGAATAGAAATGAAGTGCCTCAAAATGCTGATTTTCCTCGGCATTATTCGAGAAAGGAGAAAAAGCCTTTTCCAGTTCCCATTGTTGAACTACGACGGGCAGCTAGGGAGAGGATAAAGAAGATGAAAGATGAGCCAAGGAGAAAACCAATGCCGGCGCCAAAGAATGGATTGCTAGTGAAGAACCTTATACCAGAAGCATATGATGTGTATAATGCTAGGATCACTTTGATTAATAATTTGAAAAAGCTGCTCAAAGTAGTACCCGTGCATGCTTGTGGGTGGTGCAGTGAAATCCATGTAGGCCCTGTTGGACATCCATTCAAGTCATGTAAAGGTACACAGTCGAACATCCGCAAGGGCATTCATGAATGGACAAATGCACATGTGGAAGACATATTAATACCGATTGACGCATTTCACCTCTATGATCGTCTTGGAAAGCGGATTACTCATGAACAGAGATTCTCCATCCCTCGGATTCCAGCAGTGGTTGAGCTCTGCATTCAAGCTGGCGTTAAAATTCGAGAGTTTCCCACAAAAAGGAGAAGAAAGCCAATAATCCGTATTGGGAAGAAGGAATTTGTGGATGCTGATGAAAGTGAACTACCAGATGAAGTCCCAGAAAACCCTACACAACCGTTGATAGCTGAAATACCGGATTCAGATATAGTTGCTCCAGTGAACAAGGAGGAAATAATCCACCTTGCTGAGGAAACACTCCAAGCATGGGAACAAATGAGGAGAGGCGCCAAGAGACTAATGAGGATGTACCACGTGAGGGTCTGTGGATATTGCCCTGAAATTCATGTTGGCCCCAGCGGGCACAAAGCTCAAAATTGTGGGGCACACAAACACCAACAACGCAATGGGCAGCATGGTTGGCAATCTGCAGTGCTTGATGACTTGATACCGCCGAGATTTGTGTGGCATGTTCCTGATGTAAACGGACCACCACTAGAACGAGAGCTTAAGAATTTCTACGGACAGGCTCCGGCTGTGGTGGAAATGTGCATTCAGGCTGGTGCTGCTTTACCAGAACAATATAAATCAACAATGCGCCTTGATGTCGGGATCCCTTCAACTCTTAAAGAAGCTGAAATGGTAGTTTGA

Protein sequence

>Msa1449270

MASTVSLSNTIGFCYTKHNHNIGKLNYNSKNIVQINTFSRRKIGYGHRCFRLYCLSGGRMENNDKSDYDAASKDSGSKNRNEVPQNADFPRHYSRKEKKPFPVPIVELRRAARERIKKMKDEPRRKPMPAPKNGLLVKNLIPEAYDVYNARITLINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIPIDAFHLYDRLGKRITHEQRFSIPRIPAVVELCIQAGVKIREFPTKRRRKPIIRIGKKEFVDADESELPDEVPENPTQPLIAEIPDSDIVAPVNKEEIIHLAEETLQAWEQMRRGAKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHGWQSAVLDDLIPPRFVWHVPDVNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGIPSTLKEAEMVV*