AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199490 MtrunA17_Chr2g0294021 90.940 298 21 3 1 296 1 294 1.36e-163 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199490 AT3G17170.1 69.767 172 52 0 76 247 59 230 4.28e-88 266

Find 64 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACTCGTTGATATATT+TGG 0.137864 2_1:-18546750 None:intergenic
TGAATCTGTTCTTCTTAAAA+AGG 0.188788 2_1:+18544497 Msa0199490:CDS
CAGTTTCCACGTCAAGCTTT+AGG 0.189454 2_1:-18545540 None:intergenic
CTTGTTTCTTATCTTTCTTC+CGG 0.253687 2_1:-18544425 None:intergenic
TCTTCATTTCCTCTTAACTA+TGG 0.281522 2_1:+18544203 Msa0199490:exon
TTGTTTCTTATCTTTCTTCC+GGG 0.296250 2_1:-18544424 None:intergenic
ATGAAGAAAGGTGGTGATTT+GGG 0.304149 2_1:-18544329 None:intergenic
CATTATAGACGATGATGATT+TGG 0.314854 2_1:+18546979 Msa0199490:CDS
AGTTTCCACGTCAAGCTTTA+GGG 0.316767 2_1:-18545539 None:intergenic
TAAAGCAGTTCTGAACATTA+TGG 0.317951 2_1:+18547123 Msa0199490:three_prime_UTR
CCAGTGCTTTCATCTGATTT+AGG 0.330990 2_1:-18544465 None:intergenic
GGGAGAAGAAAGGAAGAGTA+TGG 0.343212 2_1:+18546636 Msa0199490:CDS
GATGAAGAAAGGTGGTGATT+TGG 0.361790 2_1:-18544330 None:intergenic
GCTTGACGTGGAAACTGATA+TGG 0.365705 2_1:+18545546 Msa0199490:CDS
CAACGAGTTCAAGACTTTGT+TGG 0.383716 2_1:+18546760 Msa0199490:CDS
GGAAGATGGTAAACTTCTTC+CGG 0.390554 2_1:+18545367 Msa0199490:CDS
CTTCGTCCCTCTTTATCACT+AGG 0.396913 2_1:-18546808 None:intergenic
AATTGAGAATGTAGGTAGAT+AGG 0.403197 2_1:+18547042 Msa0199490:three_prime_UTR
AGTATGGAGATTCAGTGATT+GGG 0.412799 2_1:+18546652 Msa0199490:CDS
GAGTATGGAGATTCAGTGAT+TGG 0.428387 2_1:+18546651 Msa0199490:CDS
CAGAAGACAGTTGAGGAAGA+TGG 0.433743 2_1:+18545353 Msa0199490:intron
GCTGTTAATGAGAAAGTTCA+AGG 0.436751 2_1:+18546121 Msa0199490:CDS
CACAGATGATGAAGAAGAAT+GGG 0.451353 2_1:+18546883 Msa0199490:CDS
GATGATATTGAGGGCGGTGA+TGG 0.471829 2_1:+18546950 Msa0199490:CDS
AAAGGTGGTGATTTGGGAAG+TGG 0.475386 2_1:-18544323 None:intergenic
AAGAAGAATGGGATGATGAA+TGG 0.476855 2_1:+18546894 Msa0199490:CDS
GTATTAAACTCGGGAGGAGG+AGG 0.481879 2_1:-18546848 None:intergenic
GCACAGATGATGAAGAAGAA+TGG 0.500429 2_1:+18546882 Msa0199490:CDS
GTTTGATGCTAACATGGTAG+TGG 0.521071 2_1:-18544280 None:intergenic
ATCTGATTATGATGATATTG+AGG 0.526841 2_1:+18546940 Msa0199490:CDS
TTCGACACCTAGTGATAAAG+AGG 0.527803 2_1:+18546801 Msa0199490:CDS
ATAGTGCCTCCATAGTTAAG+AGG 0.528621 2_1:-18544212 None:intergenic
AGAAGAATGGGATGATGAAT+GGG 0.530879 2_1:+18546895 Msa0199490:CDS
GATGATGAAGATGAGGAAGA+TGG 0.536094 2_1:+18546917 Msa0199490:CDS
TCTCACTCATTATGAATGCC+CGG 0.540971 2_1:+18544406 Msa0199490:CDS
TCATCATCATCTTCAAACTC+CGG 0.543493 2_1:-18545386 None:intergenic
GGTGGTGATTTGGGAAGTGG+TGG 0.547832 2_1:-18544320 None:intergenic
TCATGAGAAACATGCAGAAG+AGG 0.554875 2_1:+18546093 Msa0199490:CDS
ACGATGATGAGGATGAAGAA+AGG 0.560044 2_1:-18544341 None:intergenic
GTATGGAGATTCAGTGATTG+GGG 0.567959 2_1:+18546653 Msa0199490:CDS
AAAGTATTAAACTCGGGAGG+AGG 0.569590 2_1:-18546851 None:intergenic
ACTATGGAGGCACTATTCAA+AGG 0.569896 2_1:+18544219 Msa0199490:exon
TCATTTCCTCTTAACTATGG+AGG 0.570801 2_1:+18544206 Msa0199490:exon
TCTGATTATGATGATATTGA+GGG 0.573289 2_1:+18546941 Msa0199490:CDS
AGCAACAAAAGTATTAAACT+CGG 0.581584 2_1:-18546858 None:intergenic
TGATTGGGGTATGAGAAAGT+TGG 0.581664 2_1:+18546667 Msa0199490:CDS
TCAAGTAAACAATCTCATAG+TGG 0.585631 2_1:-18546069 None:intergenic
GGTGGAAATTGAAACGAAGA+GGG 0.588602 2_1:-18544302 None:intergenic
CCTAAATCAGATGAAAGCAC+TGG 0.590334 2_1:+18544465 Msa0199490:CDS
GGATTGAGAATTGAGAATGT+AGG 0.592175 2_1:+18547034 Msa0199490:three_prime_UTR
GGCCAGAAAATAGCATAATG+AGG 0.595713 2_1:+18547013 Msa0199490:exon
AAGAGGGTTTGATGCTAACA+TGG 0.608938 2_1:-18544286 None:intergenic
GCAACAAAAGTATTAAACTC+GGG 0.611767 2_1:-18546857 None:intergenic
TGATGATTTGGAAATATCAG+AGG 0.612887 2_1:+18546991 Msa0199490:CDS
TATTAAACTCGGGAGGAGGA+GGG 0.622797 2_1:-18546847 None:intergenic
TGGTGGAAATTGAAACGAAG+AGG 0.627794 2_1:-18544303 None:intergenic
TGAATGGGATGATGAAGATG+AGG 0.638287 2_1:+18546910 Msa0199490:CDS
GATGATTTGGAAATATCAGA+GGG 0.644533 2_1:+18546992 Msa0199490:CDS
TTGGCGTGAAAACGATGATG+AGG 0.663808 2_1:-18544352 None:intergenic
TGAATCCCTAAAGCTTGACG+TGG 0.671676 2_1:+18545534 Msa0199490:CDS
ACAAAAGTATTAAACTCGGG+AGG 0.675886 2_1:-18546854 None:intergenic
TCGACACCTAGTGATAAAGA+GGG 0.685347 2_1:+18546802 Msa0199490:CDS
ATGATGAGGATGAAGAAAGG+TGG 0.696138 2_1:-18544338 None:intergenic
GATTATGATGATATTGAGGG+CGG 0.728969 2_1:+18546944 Msa0199490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr2_1:18547149-18547168 Msa0199490:intron 0.0%
!! ATAAACAAAAATCAAATAAA+GGG - chr2_1:18544541-18544560 None:intergenic 10.0%
!! AATAAACAAAAATCAAATAA+AGG - chr2_1:18544542-18544561 None:intergenic 10.0%
!! TTGAATTTATACTTATATAT+TGG + chr2_1:18544635-18544654 Msa0199490:intron 10.0%
!! CAAATAAAAAAAATTATTAG+AGG - chr2_1:18545944-18545963 None:intergenic 10.0%
!! AATTCAATAAATCTTCAAAA+GGG - chr2_1:18544622-18544641 None:intergenic 15.0%
!! AAATTCAATAAATCTTCAAA+AGG - chr2_1:18544623-18544642 None:intergenic 15.0%
!!! AAAATGAAAATTTGGAATAA+GGG - chr2_1:18545497-18545516 None:intergenic 15.0%
!!! TCAAGTTAAAATGATTTTTT+TGG - chr2_1:18546534-18546553 None:intergenic 15.0%
!! ATTCTAATGAATCTTCAAAA+GGG - chr2_1:18544757-18544776 None:intergenic 20.0%
!! AATTCTAATGAATCTTCAAA+AGG - chr2_1:18544758-18544777 None:intergenic 20.0%
!!! TTATTACTAAGGAGTTTTTT+TGG + chr2_1:18544791-18544810 Msa0199490:intron 20.0%
!! TTTCTCATTGATATTCAATA+TGG + chr2_1:18545239-18545258 Msa0199490:intron 20.0%
!! TTCTCATTGATATTCAATAT+GGG + chr2_1:18545240-18545259 Msa0199490:intron 20.0%
!! TGAGAAAATTCATATCATAA+AGG - chr2_1:18545298-18545317 None:intergenic 20.0%
!! TTTCTCATTGATATTCAATT+TGG + chr2_1:18545311-18545330 Msa0199490:intron 20.0%
!! TTCTCATTGATATTCAATTT+GGG + chr2_1:18545312-18545331 Msa0199490:intron 20.0%
!!! TCTGTTTGTTTTTGTTTTTT+TGG + chr2_1:18545434-18545453 Msa0199490:intron 20.0%
!!! GAAAATGAAAATTTGGAATA+AGG - chr2_1:18545498-18545517 None:intergenic 20.0%
!!! TTGATGCAATTTTTATTCAT+AGG + chr2_1:18545631-18545650 Msa0199490:intron 20.0%
!! TACTCTTTATTGTATATGTA+TGG + chr2_1:18545665-18545684 Msa0199490:intron 20.0%
!! TTTGTAAACATTATCTAACA+AGG - chr2_1:18545742-18545761 None:intergenic 20.0%
!! ATAGATTCGAAAAAAATGTA+AGG - chr2_1:18546171-18546190 None:intergenic 20.0%
!! ATGTCACTATTGTTAAATAT+AGG + chr2_1:18546252-18546271 Msa0199490:intron 20.0%
!! AATACAGAACAATAATGATT+TGG - chr2_1:18546307-18546326 None:intergenic 20.0%
!! TAAAAAAGAACCAGAATAAT+CGG - chr2_1:18546582-18546601 None:intergenic 20.0%
!! CTTTATATTCTAACGAAAAA+AGG - chr2_1:18547108-18547127 None:intergenic 20.0%
!!! GGTTATTTTGAAGAGAAAAT+TGG - chr2_1:18544374-18544393 None:intergenic 25.0%
!!! TTTTAAGAAGAACAGATTCA+GGG - chr2_1:18544497-18544516 None:intergenic 25.0%
!!! TTTTTAAGAAGAACAGATTC+AGG - chr2_1:18544498-18544517 None:intergenic 25.0%
! TGAATCTGTTCTTCTTAAAA+AGG + chr2_1:18544497-18544516 Msa0199490:CDS 25.0%
! GTATACCAAAACAAATTTGA+GGG - chr2_1:18544675-18544694 None:intergenic 25.0%
! AGTATACCAAAACAAATTTG+AGG - chr2_1:18544676-18544695 None:intergenic 25.0%
! CACTTGTAATGTTATTACTA+AGG + chr2_1:18544780-18544799 Msa0199490:intron 25.0%
!! AATCTTATCTTGTTCTGTTT+TGG + chr2_1:18544836-18544855 Msa0199490:intron 25.0%
! TAAACATTATCTAACAAGGT+CGG - chr2_1:18545738-18545757 None:intergenic 25.0%
! ATTATCGTCATTATGGTTTA+GGG - chr2_1:18545773-18545792 None:intergenic 25.0%
! ACTAATGAACTCATTCTATT+TGG - chr2_1:18546210-18546229 None:intergenic 25.0%
! TTTAATAATAACCTTTGCTG+TGG + chr2_1:18546443-18546462 Msa0199490:intron 25.0%
!!! AGCAACAAAAGTATTAAACT+CGG - chr2_1:18546861-18546880 None:intergenic 25.0%
! ATCTGATTATGATGATATTG+AGG + chr2_1:18546940-18546959 Msa0199490:CDS 25.0%
! TCTGATTATGATGATATTGA+GGG + chr2_1:18546941-18546960 Msa0199490:CDS 25.0%
TCTTCATTTCCTCTTAACTA+TGG + chr2_1:18544203-18544222 Msa0199490:exon 30.0%
! ATGAGTGAGAATGATTTTCT+GGG - chr2_1:18544396-18544415 None:intergenic 30.0%
! AATGAGTGAGAATGATTTTC+TGG - chr2_1:18544397-18544416 None:intergenic 30.0%
! TTGTTTCTTATCTTTCTTCC+GGG - chr2_1:18544427-18544446 None:intergenic 30.0%
! CTTGTTTCTTATCTTTCTTC+CGG - chr2_1:18544428-18544447 None:intergenic 30.0%
!! CAATACCCTCAAATTTGTTT+TGG + chr2_1:18544667-18544686 Msa0199490:intron 30.0%
TAATTTCTGCTAGTTGTCAT+TGG + chr2_1:18544711-18544730 Msa0199490:intron 30.0%
!!! TTGTTCTGTTTTGGTTAGAA+GGG + chr2_1:18544845-18544864 Msa0199490:intron 30.0%
GGGAGAGTAATTCATTATTT+AGG + chr2_1:18544865-18544884 Msa0199490:intron 30.0%
GTAATTCATTATTTAGGCGA+AGG + chr2_1:18544871-18544890 Msa0199490:intron 30.0%
TCTAATGTCAAATGCTATGA+AGG - chr2_1:18545113-18545132 None:intergenic 30.0%
! ATTTGACATTAGAGAAGTGT+AGG + chr2_1:18545120-18545139 Msa0199490:intron 30.0%
! TTTGGTAGTCTAAATAGTTC+TGG + chr2_1:18545452-18545471 Msa0199490:intron 30.0%
CTGGATTAATGTTATGACTT+TGG + chr2_1:18545471-18545490 Msa0199490:intron 30.0%
CCTGTACGAAAATGAAAATT+TGG - chr2_1:18545505-18545524 None:intergenic 30.0%
! CCAAATTTTCATTTTCGTAC+AGG + chr2_1:18545502-18545521 Msa0199490:intron 30.0%
CAGTAACATGACAAACTATT+TGG + chr2_1:18545708-18545727 Msa0199490:intron 30.0%
GATTATCGTCATTATGGTTT+AGG - chr2_1:18545774-18545793 None:intergenic 30.0%
CATCTAGATTATCGTCATTA+TGG - chr2_1:18545780-18545799 None:intergenic 30.0%
! ATCCATCTTTTGCTAACTTT+TGG + chr2_1:18545860-18545879 Msa0199490:intron 30.0%
CACGTTACTGAATCTTTAAA+GGG - chr2_1:18546008-18546027 None:intergenic 30.0%
TCAAGTAAACAATCTCATAG+TGG - chr2_1:18546072-18546091 None:intergenic 30.0%
GGTTAATTGCAATCTTTGAA+AGG - chr2_1:18546150-18546169 None:intergenic 30.0%
AATAATTGTATCCACAGCAA+AGG - chr2_1:18546457-18546476 None:intergenic 30.0%
AAACATACTTCCGATTATTC+TGG + chr2_1:18546569-18546588 Msa0199490:intron 30.0%
! AAACATTTGCAGACTTTTTG+AGG + chr2_1:18546615-18546634 Msa0199490:intron 30.0%
! AACATTTGCAGACTTTTTGA+GGG + chr2_1:18546616-18546635 Msa0199490:intron 30.0%
CTTGAACTCGTTGATATATT+TGG - chr2_1:18546753-18546772 None:intergenic 30.0%
!! GCAACAAAAGTATTAAACTC+GGG - chr2_1:18546860-18546879 None:intergenic 30.0%
CATTATAGACGATGATGATT+TGG + chr2_1:18546979-18546998 Msa0199490:CDS 30.0%
! TGATGATTTGGAAATATCAG+AGG + chr2_1:18546991-18547010 Msa0199490:CDS 30.0%
! GATGATTTGGAAATATCAGA+GGG + chr2_1:18546992-18547011 Msa0199490:CDS 30.0%
!!! ATCCTCATTATGCTATTTTC+TGG - chr2_1:18547018-18547037 None:intergenic 30.0%
AATTGAGAATGTAGGTAGAT+AGG + chr2_1:18547042-18547061 Msa0199490:three_prime_UTR 30.0%
!! TAAAGCAGTTCTGAACATTA+TGG + chr2_1:18547123-18547142 Msa0199490:three_prime_UTR 30.0%
TCATTTCCTCTTAACTATGG+AGG + chr2_1:18544206-18544225 Msa0199490:exon 35.0%
!! GTTTTTGGAGGTTTAGAAGA+AGG - chr2_1:18544261-18544280 None:intergenic 35.0%
ATGAAGAAAGGTGGTGATTT+GGG - chr2_1:18544332-18544351 None:intergenic 35.0%
! TGAGTGAGAATGATTTTCTG+GGG - chr2_1:18544395-18544414 None:intergenic 35.0%
!!! CTTGTTCTGTTTTGGTTAGA+AGG + chr2_1:18544844-18544863 Msa0199490:intron 35.0%
! ACACAAATTTGCCCATTTTG+TGG + chr2_1:18544898-18544917 Msa0199490:intron 35.0%
CAAGTCATACACCACAAAAT+GGG - chr2_1:18544912-18544931 None:intergenic 35.0%
ACAAGTCATACACCACAAAA+TGG - chr2_1:18544913-18544932 None:intergenic 35.0%
TGTAATCATAGCTGTTGTGT+TGG + chr2_1:18545024-18545043 Msa0199490:intron 35.0%
! CTAAATTTTGCATACAAGCG+AGG - chr2_1:18545180-18545199 None:intergenic 35.0%
! TCATTTTCAGAAGACAGTTG+AGG + chr2_1:18545346-18545365 Msa0199490:intron 35.0%
TCATCATCATCTTCAAACTC+CGG - chr2_1:18545389-18545408 None:intergenic 35.0%
TGCCAAAAGTTAGCAAAAGA+TGG - chr2_1:18545865-18545884 None:intergenic 35.0%
GTCATGAACAAATGACATAG+AGG - chr2_1:18545913-18545932 None:intergenic 35.0%
GCACGTTACTGAATCTTTAA+AGG - chr2_1:18546009-18546028 None:intergenic 35.0%
GCTGTTAATGAGAAAGTTCA+AGG + chr2_1:18546121-18546140 Msa0199490:CDS 35.0%
!! ATTAGTTTGCCATTTCCATC+TGG + chr2_1:18546224-18546243 Msa0199490:intron 35.0%
TCAACTGTATTGCCAAATTG+TGG - chr2_1:18546393-18546412 None:intergenic 35.0%
AGTATGGAGATTCAGTGATT+GGG + chr2_1:18546652-18546671 Msa0199490:CDS 35.0%
!! CATTTTGATGAACTTCGAGA+TGG + chr2_1:18546724-18546743 Msa0199490:CDS 35.0%
!! ACAAAAGTATTAAACTCGGG+AGG - chr2_1:18546857-18546876 None:intergenic 35.0%
CACAGATGATGAAGAAGAAT+GGG + chr2_1:18546883-18546902 Msa0199490:CDS 35.0%
AAGAAGAATGGGATGATGAA+TGG + chr2_1:18546894-18546913 Msa0199490:CDS 35.0%
AGAAGAATGGGATGATGAAT+GGG + chr2_1:18546895-18546914 Msa0199490:CDS 35.0%
GATTATGATGATATTGAGGG+CGG + chr2_1:18546944-18546963 Msa0199490:CDS 35.0%
GGATTGAGAATTGAGAATGT+AGG + chr2_1:18547034-18547053 Msa0199490:three_prime_UTR 35.0%
ATAGTGCCTCCATAGTTAAG+AGG - chr2_1:18544215-18544234 None:intergenic 40.0%
!! ACTATGGAGGCACTATTCAA+AGG + chr2_1:18544219-18544238 Msa0199490:exon 40.0%
!!! AACATGGTAGTGGTTTTTGG+AGG - chr2_1:18544273-18544292 None:intergenic 40.0%
!!! GCTAACATGGTAGTGGTTTT+TGG - chr2_1:18544276-18544295 None:intergenic 40.0%
GTTTGATGCTAACATGGTAG+TGG - chr2_1:18544283-18544302 None:intergenic 40.0%
AAGAGGGTTTGATGCTAACA+TGG - chr2_1:18544289-18544308 None:intergenic 40.0%
GGTGGAAATTGAAACGAAGA+GGG - chr2_1:18544305-18544324 None:intergenic 40.0%
TGGTGGAAATTGAAACGAAG+AGG - chr2_1:18544306-18544325 None:intergenic 40.0%
GATGAAGAAAGGTGGTGATT+TGG - chr2_1:18544333-18544352 None:intergenic 40.0%
ATGATGAGGATGAAGAAAGG+TGG - chr2_1:18544341-18544360 None:intergenic 40.0%
ACGATGATGAGGATGAAGAA+AGG - chr2_1:18544344-18544363 None:intergenic 40.0%
TCTCACTCATTATGAATGCC+CGG + chr2_1:18544406-18544425 Msa0199490:CDS 40.0%
CCAGTGCTTTCATCTGATTT+AGG - chr2_1:18544468-18544487 None:intergenic 40.0%
! CCTAAATCAGATGAAAGCAC+TGG + chr2_1:18544465-18544484 Msa0199490:CDS 40.0%
GGAAGATGGTAAACTTCTTC+CGG + chr2_1:18545367-18545386 Msa0199490:CDS 40.0%
AGTTTCCACGTCAAGCTTTA+GGG - chr2_1:18545542-18545561 None:intergenic 40.0%
! CATTATGGTTTAGGGCAGTA+TGG - chr2_1:18545765-18545784 None:intergenic 40.0%
ATGTTATAACCGTGCTCTCT+TGG + chr2_1:18545797-18545816 Msa0199490:intron 40.0%
AAGATGGATCTAAATCCACC+TGG - chr2_1:18545849-18545868 None:intergenic 40.0%
TCATGAGAAACATGCAGAAG+AGG + chr2_1:18546093-18546112 Msa0199490:CDS 40.0%
ACATGAATGCCAGATGGAAA+TGG - chr2_1:18546236-18546255 None:intergenic 40.0%
ATAGTGACATGAATGCCAGA+TGG - chr2_1:18546242-18546261 None:intergenic 40.0%
! CACTGTTGCTTACCACAATT+TGG + chr2_1:18546378-18546397 Msa0199490:intron 40.0%
!! GACTTTTTGAGGGAGAAGAA+AGG + chr2_1:18546626-18546645 Msa0199490:intron 40.0%
GAGTATGGAGATTCAGTGAT+TGG + chr2_1:18546651-18546670 Msa0199490:CDS 40.0%
GTATGGAGATTCAGTGATTG+GGG + chr2_1:18546653-18546672 Msa0199490:CDS 40.0%
TGATTGGGGTATGAGAAAGT+TGG + chr2_1:18546667-18546686 Msa0199490:CDS 40.0%
CAACGAGTTCAAGACTTTGT+TGG + chr2_1:18546760-18546779 Msa0199490:CDS 40.0%
TTCGACACCTAGTGATAAAG+AGG + chr2_1:18546801-18546820 Msa0199490:CDS 40.0%
TCGACACCTAGTGATAAAGA+GGG + chr2_1:18546802-18546821 Msa0199490:CDS 40.0%
! AAAGTATTAAACTCGGGAGG+AGG - chr2_1:18546854-18546873 None:intergenic 40.0%
GCACAGATGATGAAGAAGAA+TGG + chr2_1:18546882-18546901 Msa0199490:CDS 40.0%
TGAATGGGATGATGAAGATG+AGG + chr2_1:18546910-18546929 Msa0199490:CDS 40.0%
GATGATGAAGATGAGGAAGA+TGG + chr2_1:18546917-18546936 Msa0199490:CDS 40.0%
GGCCAGAAAATAGCATAATG+AGG + chr2_1:18547013-18547032 Msa0199490:exon 40.0%
! AAAGGTGGTGATTTGGGAAG+TGG - chr2_1:18544326-18544345 None:intergenic 45.0%
TTGGCGTGAAAACGATGATG+AGG - chr2_1:18544355-18544374 None:intergenic 45.0%
! CATAGCTGTTGTGTTGGTGT+CGG + chr2_1:18545030-18545049 Msa0199490:intron 45.0%
AATTAGTCGTGTCCCAGCTT+CGG - chr2_1:18545076-18545095 None:intergenic 45.0%
CAGAAGACAGTTGAGGAAGA+TGG + chr2_1:18545353-18545372 Msa0199490:intron 45.0%
TGAATCCCTAAAGCTTGACG+TGG + chr2_1:18545534-18545553 Msa0199490:CDS 45.0%
CAGTTTCCACGTCAAGCTTT+AGG - chr2_1:18545543-18545562 None:intergenic 45.0%
GCTTGACGTGGAAACTGATA+TGG + chr2_1:18545546-18545565 Msa0199490:CDS 45.0%
! GGTCTTATCAGACATTCACC+AGG + chr2_1:18545828-18545847 Msa0199490:intron 45.0%
CTTATCAGACATTCACCAGG+TGG + chr2_1:18545831-18545850 Msa0199490:intron 45.0%
GCTATAGTGTTATGCCGTAG+CGG + chr2_1:18546274-18546293 Msa0199490:intron 45.0%
! GATTTGGTCCAATTCCGCTA+CGG - chr2_1:18546291-18546310 None:intergenic 45.0%
GGGAGAAGAAAGGAAGAGTA+TGG + chr2_1:18546636-18546655 Msa0199490:CDS 45.0%
CTTCGTCCCTCTTTATCACT+AGG - chr2_1:18546811-18546830 None:intergenic 45.0%
TATTAAACTCGGGAGGAGGA+GGG - chr2_1:18546850-18546869 None:intergenic 45.0%
!! TGTTGTGTTGGTGTCGGTGT+TGG + chr2_1:18545036-18545055 Msa0199490:intron 50.0%
ACTGATGTGTGTCCGAAGCT+GGG + chr2_1:18545061-18545080 Msa0199490:intron 50.0%
! GTGTTATGCCGTAGCGGAAT+TGG + chr2_1:18546280-18546299 Msa0199490:intron 50.0%
GTATTAAACTCGGGAGGAGG+AGG - chr2_1:18546851-18546870 None:intergenic 50.0%
GATGATATTGAGGGCGGTGA+TGG + chr2_1:18546950-18546969 Msa0199490:CDS 50.0%
! GGTGGTGATTTGGGAAGTGG+TGG - chr2_1:18544323-18544342 None:intergenic 55.0%
TGTCAGCGTGTTCGTGTTCG+TGG - chr2_1:18544971-18544990 None:intergenic 55.0%
CACTGATGTGTGTCCGAAGC+TGG + chr2_1:18545060-18545079 Msa0199490:intron 55.0%
CCAGACTGTCCAAGAGAGCA+CGG - chr2_1:18545809-18545828 None:intergenic 55.0%
CGTGCTCTCTTGGACAGTCT+GGG + chr2_1:18545807-18545826 Msa0199490:intron 55.0%
CCGTGCTCTCTTGGACAGTC+TGG + chr2_1:18545806-18545825 Msa0199490:intron 60.0%
TGAAGCGCAGACGCAGACGC+AGG + chr2_1:18544939-18544958 Msa0199490:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 18544188 18547203 18544188 ID=Msa0199490;Name=Msa0199490
chr2_1 mRNA 18544188 18547203 18544188 ID=Msa0199490-mRNA-1;Parent=Msa0199490;Name=Msa0199490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|0.8|0.66|6|151|296
chr2_1 exon 18544188 18544518 18544188 ID=Msa0199490-mRNA-1:exon:7794;Parent=Msa0199490-mRNA-1
chr2_1 exon 18545356 18545410 18545356 ID=Msa0199490-mRNA-1:exon:7795;Parent=Msa0199490-mRNA-1
chr2_1 exon 18545524 18545580 18545524 ID=Msa0199490-mRNA-1:exon:7796;Parent=Msa0199490-mRNA-1
chr2_1 exon 18546065 18546142 18546065 ID=Msa0199490-mRNA-1:exon:7797;Parent=Msa0199490-mRNA-1
chr2_1 exon 18546627 18547159 18546627 ID=Msa0199490-mRNA-1:exon:7798;Parent=Msa0199490-mRNA-1
chr2_1 exon 18547182 18547203 18547182 ID=Msa0199490-mRNA-1:exon:7799;Parent=Msa0199490-mRNA-1
chr2_1 five_prime_UTR 18544188 18544221 18544188 ID=Msa0199490-mRNA-1:five_prime_utr;Parent=Msa0199490-mRNA-1
chr2_1 CDS 18544222 18544518 18544222 ID=Msa0199490-mRNA-1:cds;Parent=Msa0199490-mRNA-1
chr2_1 CDS 18545356 18545410 18545356 ID=Msa0199490-mRNA-1:cds;Parent=Msa0199490-mRNA-1
chr2_1 CDS 18545524 18545580 18545524 ID=Msa0199490-mRNA-1:cds;Parent=Msa0199490-mRNA-1
chr2_1 CDS 18546065 18546142 18546065 ID=Msa0199490-mRNA-1:cds;Parent=Msa0199490-mRNA-1
chr2_1 CDS 18546627 18547030 18546627 ID=Msa0199490-mRNA-1:cds;Parent=Msa0199490-mRNA-1
chr2_1 three_prime_UTR 18547031 18547159 18547031 ID=Msa0199490-mRNA-1:three_prime_utr;Parent=Msa0199490-mRNA-1
chr2_1 three_prime_UTR 18547182 18547203 18547182 ID=Msa0199490-mRNA-1:three_prime_utr;Parent=Msa0199490-mRNA-1
Gene Sequence

>Msa0199490

ATGGAGGCACTATTCAAAGGTTCTTCTTATCTCTCACCTTCTTCTAAACCTCCAAAAACCACTACCATGTTAGCATCAAACCCTCTTCGTTTCAATTTCCACCACTTCCCAAATCACCACCTTTCTTCATCCTCATCATCGTTTTCACGCCAATTTTCTCTTCAAAATAACCCCAGAAAATCATTCTCACTCATTATGAATGCCCGGAAGAAAGATAAGAAACAAGATACTCATAGTTTTGTGCCTAAATCAGATGAAAGCACTGGCTTCTTCCCTGAATCTGTTCTTCTTAAAAAGAAGACAGTTGAGGAAGATGGTAAACTTCTTCCGGAGTTTGAAGATGATGATGAAAGAAAGCTCTATGAATCCCTAAAGCTTGACGTGGAAACTGATATGGACGTTGAACTATTGCGCCACTATGAGATTGTTTACTTGATTCATGAGAAACATGCAGAAGAGGTTGTTGCTGTTAATGAGAAAGTTCAAGACTTTTTGAGGGAGAAGAAAGGAAGAGTATGGAGATTCAGTGATTGGGGTATGAGAAAGTTGGCTTACAAAATACAGAAAGCTAACAACGCACACTACATTTTGATGAACTTCGAGATGGACGCCAAATATATCAACGAGTTCAAGACTTTGTTGGACAAAGATGAAAGAGTTATTCGACACCTAGTGATAAAGAGGGACGAAGCAATCACTGAAGATTGCCCTCCTCCTCCCGAGTTTAATACTTTTGTTGCTAGCACAGATGATGAAGAAGAATGGGATGATGAATGGGATGATGAAGATGAGGAAGATGGATCTGATTATGATGATATTGAGGGCGGTGATGGAATTTTCATTATAGACGATGATGATTTGGAAATATCAGAGGGCCAGAAAATAGCATAA

Protein sequence

>Msa0199490

MEALFKGSSYLSPSSKPPKTTTMLASNPLRFNFHHFPNHHLSSSSSSFSRQFSLQNNPRKSFSLIMNARKKDKKQDTHSFVPKSDESTGFFPESVLLKKKTVEEDGKLLPEFEDDDERKLYESLKLDVETDMDVELLRHYEIVYLIHEKHAEEVVAVNEKVQDFLREKKGRVWRFSDWGMRKLAYKIQKANNAHYILMNFEMDAKYINEFKTLLDKDERVIRHLVIKRDEAITEDCPPPPEFNTFVASTDDEEEWDDEWDDEDEEDGSDYDDIEGGDGIFIIDDDDLEISEGQKIA*