AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428610 MtrunA17_Chr1g0161491 95.871 1114 42 1 1 1110 15 1128 0.0 2227
Msa1428610 MtrunA17_Chr1g0161521 85.318 1117 157 3 1 1110 1 1117 0.0 1958
Msa1428610 MtrunA17_Chr1g0161511 84.540 1119 163 5 1 1110 1 1118 0.0 1916
Msa1428610 MtrunA17_Chr1g0161471 83.750 1120 169 5 1 1110 1 1117 0.0 1904
Msa1428610 MtrunA17_Chr1g0161451 54.960 1119 463 10 5 1096 3 1107 0.0 1229
Msa1428610 MtrunA17_Chr4g0059271 37.391 1142 635 21 2 1091 6 1119 0.0 746
Msa1428610 MtrunA17_Chr3g0137841 36.547 1141 610 30 47 1101 79 1191 0.0 622
Msa1428610 MtrunA17_Chr4g0059261 52.941 85 40 0 849 933 1 85 1.66e-21 92.0
Msa1428610 MtrunA17_Chr6g0486821 22.796 658 370 27 492 1058 317 927 7.03e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428610 AT1G14790.1 62.399 1109 408 8 5 1109 3 1106 0.0 1397
Msa1428610 AT4G11130.1 38.550 1131 629 20 6 1092 11 1119 0.0 753
Msa1428610 AT3G49500.3 35.484 1085 569 32 100 1093 132 1176 1.00e-176 551
Msa1428610 AT3G49500.4 35.484 1085 569 32 100 1093 132 1176 1.00e-176 551
Msa1428610 AT3G49500.1 35.484 1085 569 32 100 1093 132 1176 1.00e-176 551
Msa1428610 AT3G49500.2 35.484 1085 569 32 100 1093 132 1176 1.00e-176 551
Msa1428610 AT3G49500.5 35.484 1085 569 32 100 1093 132 1176 1.00e-176 551
Msa1428610 AT2G19930.2 25.000 680 382 29 360 945 201 846 1.13e-25 115
Msa1428610 AT2G19930.3 25.000 680 382 29 360 945 195 840 1.19e-25 115
Msa1428610 AT2G19930.1 24.597 683 387 27 360 945 195 846 5.07e-25 113
Msa1428610 AT2G19910.2 25.714 595 329 24 431 933 265 838 1.80e-21 101
Msa1428610 AT2G19920.2 25.801 593 321 27 434 933 281 847 4.45e-20 97.1
Msa1428610 AT2G19920.1 25.801 593 321 27 434 933 268 834 4.84e-20 97.1
Msa1428610 AT2G19920.3 25.801 593 321 27 434 933 267 833 5.88e-20 96.7
Msa1428610 AT2G19920.4 25.801 593 321 27 434 933 267 833 5.99e-20 96.7
Msa1428610 AT2G19910.1 25.331 604 329 24 431 933 265 847 6.93e-20 96.7

Find 254 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGATGCTGCAGACATTT+AGG 0.135808 tig0026391:+38989 Msa1428610:CDS
CATGGAAGTTGATGGATTTA+TGG 0.158966 tig0026391:+41280 Msa1428610:CDS
GACGATGTTAAACTGTATTT+TGG 0.159141 tig0026391:+35791 Msa1428610:CDS
GTTCAGCACGGGTGTCTTTC+AGG 0.167610 tig0026391:+37803 Msa1428610:CDS
GTGGATGCTAGTGTAGATTT+TGG 0.172622 tig0026391:+35854 Msa1428610:CDS
CTCTTCTGTTTGTAGTTAAT+TGG 0.176066 tig0026391:+37437 Msa1428610:intron
CCCATCATTGCTCTTCCTTT+TGG 0.190630 tig0026391:-39057 Msa1428610:intergenic
AGCTTTCATATGAGAATATT+TGG 0.191630 tig0026391:+35936 Msa1428610:CDS
TCCCAACTTCTCGTCATAAT+TGG 0.203950 tig0026391:-41333 Msa1428610:intergenic
GGAACTCCTATTTAAAAGTT+AGG 0.218706 tig0026391:+35717 Msa1428610:CDS
TCTTGATTTGAACAAGTAAA+TGG 0.221515 tig0026391:-41646 Msa1428610:intergenic
TAACATAAAATTGGATGTTT+TGG 0.238256 tig0026391:+38723 Msa1428610:CDS
CATGAAATCTGGATATTCTT+TGG 0.260088 tig0026391:-41120 Msa1428610:intergenic
CGCATCCGCATCCCTTCTTT+TGG 0.261948 tig0026391:-41435 Msa1428610:intergenic
GAAACTAGAACCTTAGAATA+TGG 0.263426 tig0026391:+39090 Msa1428610:CDS
TCCATTGGTTCAATTGTTCT+AGG 0.267079 tig0026391:-39800 Msa1428610:intergenic
TCCAAAGCCAAGGGCATTCT+TGG 0.267359 tig0026391:+35760 Msa1428610:CDS
GCTAGACTTGGACAGTCTTT+TGG 0.267504 tig0026391:+38427 Msa1428610:CDS
TGCAAAGTATCTATTGATTC+AGG 0.268018 tig0026391:+35991 Msa1428610:CDS
AGGAAAGATTCTCTATATTA+TGG 0.268444 tig0026391:+35828 Msa1428610:CDS
AAGTGGGAATATTATGAAAA+TGG 0.271683 tig0026391:+41400 Msa1428610:CDS
ATGTAATAGGAAAACTGTTT+AGG 0.287570 tig0026391:+41177 Msa1428610:CDS
AATGATGCTGCAGACATTTA+GGG 0.287937 tig0026391:+38990 Msa1428610:CDS
ATCTCCCATCCATTCCCTTA+TGG 0.297497 tig0026391:-38371 Msa1428610:intergenic
TCCAAGAATGCCCTTGGCTT+TGG 0.307615 tig0026391:-35761 Msa1428610:intergenic
ACTTACCATCATAGTTACTA+TGG 0.312137 tig0026391:+41566 Msa1428610:CDS
AACTAAGGCACATGAGGTTT+TGG 0.315177 tig0026391:+38882 Msa1428610:CDS
GAAAGAAATGGCTCAACATT+AGG 0.318451 tig0026391:-38967 Msa1428610:intergenic
TGATCTTTCAGCCATCTTGC+AGG 0.325752 tig0026391:-37938 Msa1428610:intergenic
TTCACTCCTTGCAGTTGTAT+TGG 0.326260 tig0026391:+37572 Msa1428610:CDS
TGTAATAGGAAAACTGTTTA+GGG 0.327771 tig0026391:+41178 Msa1428610:CDS
TGATTCAGATAACATAAAAT+TGG 0.328974 tig0026391:+38714 Msa1428610:CDS
GCACGGATCCATTGGTCATC+AGG 0.340256 tig0026391:-37542 Msa1428610:intergenic
TGCCATCCGCGTTTCAGATT+CGG 0.342405 tig0026391:+38611 Msa1428610:CDS
CAGTCATTCTCGTGTAGTTA+AGG 0.343350 tig0026391:+39149 Msa1428610:CDS
TCACTCCTTGCAGTTGTATT+GGG 0.345151 tig0026391:+37573 Msa1428610:CDS
AGTAAAACAATTGAGTTGTA+TGG 0.346819 tig0026391:+35500 Msa1428610:CDS
TGAATAATTGCAAATGCTCT+TGG 0.351532 tig0026391:-35629 Msa1428610:intergenic
TCAGCCTTCTCCATGAAATC+TGG 0.351605 tig0026391:-41131 Msa1428610:intergenic
GGGACATCTACTTCGTTTGT+TGG 0.352219 tig0026391:+39759 Msa1428610:CDS
TTGTTCAATATTCTAGCAAT+AGG 0.353250 tig0026391:+39121 Msa1428610:CDS
TGGTTCAATGAAGACGATAC+TGG 0.362216 tig0026391:+41500 Msa1428610:CDS
ATAATTGGATTTGTAGTAGA+AGG 0.369895 tig0026391:-41318 Msa1428610:intergenic
ACGGCTGGGATACCGGTCTT+TGG 0.370412 tig0026391:-41077 Msa1428610:intergenic
CAATATCTATGCCATTTCTA+AGG 0.372511 tig0026391:-38249 Msa1428610:intergenic
CGACTATATCTTTGGATAAC+GGG 0.374346 tig0026391:+38002 Msa1428610:CDS
CTTAGAAATGGCATAGATAT+TGG 0.374817 tig0026391:+38250 Msa1428610:CDS
TTCTGCCCAACCTATTGTAT+TGG 0.375119 tig0026391:+39829 Msa1428610:CDS
TACAAATCAGATAATGTAAT+AGG 0.377558 tig0026391:+41164 Msa1428610:CDS
TCGGTCACCGACTATATCTT+TGG 0.382147 tig0026391:+37994 Msa1428610:CDS
AACTCCTCGCTTCTTTCCTT+AGG 0.387242 tig0026391:-41478 Msa1428610:intergenic
TCTTCACGTATTTCTAAGAA+TGG 0.393521 tig0026391:+38193 Msa1428610:CDS
GCAGAACTAAATTGCGGTTC+GGG 0.394506 tig0026391:+35696 Msa1428610:CDS
TCACTTCCGGAACACTCGTT+TGG 0.395235 tig0026391:-39728 Msa1428610:intergenic
ATTCTTTCCATCCTTAGAAA+TGG 0.402135 tig0026391:+38238 Msa1428610:CDS
ATGTTTGCTCGTACAACAAC+TGG 0.409301 tig0026391:+38334 Msa1428610:CDS
AGAAATACGTGAAGATAAAT+CGG 0.410629 tig0026391:-38185 Msa1428610:intergenic
CTATTTAAAAGTTAGGGAAA+TGG 0.416320 tig0026391:+35724 Msa1428610:CDS
AAACTAGAACCTTAGAATAT+GGG 0.421804 tig0026391:+39091 Msa1428610:CDS
ATTTAGGGAATCAAAGTTGT+TGG 0.422233 tig0026391:+39005 Msa1428610:CDS
ATCCAATTATGACGAGAAGT+TGG 0.422789 tig0026391:+41331 Msa1428610:CDS
AAAAGTTATCGATATGTTGA+TGG 0.424991 tig0026391:-38117 Msa1428610:intergenic
TATGTCTTCTCTGATGGAAT+CGG 0.427238 tig0026391:+38532 Msa1428610:CDS
TCCATCAGAGAAGACATATT+CGG 0.427902 tig0026391:-38527 Msa1428610:intergenic
AGCAGAACTAAATTGCGGTT+CGG 0.428037 tig0026391:+35695 Msa1428610:CDS
GGACATCTACTTCGTTTGTT+GGG 0.428055 tig0026391:+39760 Msa1428610:CDS
CAGAGATTAATGTCTCAAAT+CGG 0.428075 tig0026391:+38080 Msa1428610:CDS
CATCCATTCCCTTATGGAAT+CGG 0.429954 tig0026391:-38365 Msa1428610:intergenic
CTTGTTTAAAGTTAATTCCT+TGG 0.431052 tig0026391:+37781 Msa1428610:CDS
ACCATGGAAAGCTTAGAAAA+TGG 0.431302 tig0026391:-41616 Msa1428610:intergenic
ATATTTGTAGAGCATTATAC+TGG 0.432174 tig0026391:+35557 Msa1428610:CDS
ACATCATGATCCAATACAAT+AGG 0.434504 tig0026391:-39839 Msa1428610:intergenic
ACTCCTCGCTTCTTTCCTTA+GGG 0.434521 tig0026391:-41477 Msa1428610:intergenic
GACTTACCGCCGATTCCATA+AGG 0.435845 tig0026391:+38356 Msa1428610:CDS
GAGCATCTCCTTGAGAATAT+TGG 0.435860 tig0026391:-38929 Msa1428610:intergenic
TGCAGCATCATTGAAAGAAA+TGG 0.437283 tig0026391:-38979 Msa1428610:intergenic
TCCAAAAGGAAGAGCAATGA+TGG 0.437443 tig0026391:+39056 Msa1428610:CDS
CCGACTATATCTTTGGATAA+CGG 0.440826 tig0026391:+38001 Msa1428610:CDS
CCATGTTTAACCTTCGCGTC+AGG 0.441759 tig0026391:-38499 Msa1428610:intergenic
AGTTGATCCACTCAGAATAA+AGG 0.443637 tig0026391:+37856 Msa1428610:CDS
GGCTTAGACATTGCTTTAGC+AGG 0.445161 tig0026391:-41011 Msa1428610:intergenic
TCAGACACGTTCACAAAAGA+AGG 0.445945 tig0026391:-35527 Msa1428610:intergenic
GTCCCCGTCTAGATCACTTC+CGG 0.446184 tig0026391:-39741 Msa1428610:intergenic
GAACTCCTATTTAAAAGTTA+GGG 0.447970 tig0026391:+35718 Msa1428610:CDS
TCCAATTATGACGAGAAGTT+GGG 0.452148 tig0026391:+41332 Msa1428610:CDS
GGAAAACTGTGTTCATTATG+AGG 0.454500 tig0026391:+37652 Msa1428610:CDS
ACTAGGATATTTATTCCAAA+AGG 0.454891 tig0026391:+39042 Msa1428610:CDS
GCTAAATATGCTGCTAGACT+TGG 0.459175 tig0026391:+38415 Msa1428610:CDS
TCCACCATGTGGTGCAAAGC+TGG 0.460475 tig0026391:-39243 Msa1428610:intergenic
GGATGCGGATGCGATTACTA+TGG 0.463056 tig0026391:+41445 Msa1428610:CDS
GCAACCATGGGGACAACATC+CGG 0.464035 tig0026391:-37725 Msa1428610:intergenic
TCATATACACTTGTTGATGT+AGG 0.464315 tig0026391:-37488 Msa1428610:intergenic
CAAAGAATATCCAGATTTCA+TGG 0.465205 tig0026391:+41121 Msa1428610:CDS
AGTCATTCTCGTGTAGTTAA+GGG 0.468250 tig0026391:+39150 Msa1428610:CDS
ACTGTCATTGAGTATGTAAT+TGG 0.469615 tig0026391:-40943 Msa1428610:intergenic
TACTATGGTTTGTACAATGA+AGG 0.470404 tig0026391:+41581 Msa1428610:CDS
CTTCACGTATTTCTAAGAAT+GGG 0.472233 tig0026391:+38194 Msa1428610:CDS
CTAAATCTTTCACCAAAAGA+AGG 0.473728 tig0026391:+41423 Msa1428610:CDS
CCGGAACACTCGTTTGGATG+TGG 0.476825 tig0026391:-39722 Msa1428610:intergenic
TTCAAAACACGAACATCGCC+CGG 0.477028 tig0026391:-39207 Msa1428610:intergenic
AAATATCTCTTGAACTTGCC+AGG 0.478082 tig0026391:+38557 Msa1428610:CDS
ACTTTAAACAAGATGTCAAA+TGG 0.478659 tig0026391:-37770 Msa1428610:intergenic
AGAAAAGATGTACTATTCAA+AGG 0.481118 tig0026391:+37901 Msa1428610:CDS
GGAAATCTGATGGACTACTA+TGG 0.482352 tig0026391:+41353 Msa1428610:CDS
ATCTATGCCATTTCTAAGGA+TGG 0.483375 tig0026391:-38245 Msa1428610:intergenic
GATCCCGACATGGAAGTTGA+TGG 0.485605 tig0026391:+41272 Msa1428610:CDS
TTGGGATTGGTATGAGAAAG+TGG 0.485612 tig0026391:+35873 Msa1428610:CDS
CGATTCCATAAGGGAATGGA+TGG 0.486112 tig0026391:+38366 Msa1428610:CDS
AATCCATCAACTTCCATGTC+GGG 0.487077 tig0026391:-41275 Msa1428610:intergenic
ACGGGTTGGTATATGTTCGC+AGG 0.489662 tig0026391:+38020 Msa1428610:CDS
TTCATTTGTTGACGAGGAGT+TGG 0.490048 tig0026391:+38147 Msa1428610:CDS
CCACATCCAAACGAGTGTTC+CGG 0.490224 tig0026391:+39722 Msa1428610:CDS
ATGTCTTCTCTGATGGAATC+GGG 0.491936 tig0026391:+38533 Msa1428610:CDS
TTTAATGGTGCAGGAGGTGG+AGG 0.492095 tig0026391:+40911 Msa1428610:intron
ATGATCCAATACAATAGGTT+GGG 0.494319 tig0026391:-39834 Msa1428610:intergenic
AGTTCACGAGGTATGACGGC+TGG 0.495722 tig0026391:-41092 Msa1428610:intergenic
ACCGAATATGTCTTCTCTGA+TGG 0.497328 tig0026391:+38526 Msa1428610:CDS
TTCCAGTGTGAAGGATGTAA+TGG 0.497595 tig0026391:-41231 Msa1428610:intergenic
GCTAGAATGCATCCTCATCC+TGG 0.497871 tig0026391:-41678 Msa1428610:intergenic
AGGTATGACGGCTGGGATAC+CGG 0.500646 tig0026391:-41084 Msa1428610:intergenic
TTCTCGTGTAGTTAAGGGTA+TGG 0.502945 tig0026391:+39155 Msa1428610:CDS
CCCATGGTTGCTCCTCCTCA+AGG 0.503965 tig0026391:+37737 Msa1428610:CDS
CGAGAAGTTGGGAAATCTGA+TGG 0.504341 tig0026391:+41343 Msa1428610:CDS
TTCGGAAAATCTCTGTTACT+AGG 0.505709 tig0026391:-37623 Msa1428610:intergenic
GCAGTTGACTTTCCAAAGAC+CGG 0.509499 tig0026391:+41065 Msa1428610:CDS
TTTACTTGTTCAAATCAAGA+AGG 0.509728 tig0026391:+41649 Msa1428610:CDS
CGATTTGAGACATTAATCTC+TGG 0.510436 tig0026391:-38079 Msa1428610:intergenic
GTCAATACACATTGGAGAGC+GGG 0.514429 tig0026391:+37684 Msa1428610:CDS
AGAGATTAATGTCTCAAATC+GGG 0.515941 tig0026391:+38081 Msa1428610:CDS
TACATACTCAATGACAGTCT+TGG 0.516604 tig0026391:+40948 Msa1428610:CDS
AATCTATCGCACGGATCCAT+TGG 0.517193 tig0026391:-37550 Msa1428610:intergenic
TGGAACAAAGTTTCAGTCGC+AGG 0.517680 tig0026391:+41702 Msa1428610:CDS
CAATTTAGTTCTGCTAGGTA+AGG 0.518592 tig0026391:-35687 Msa1428610:intergenic
TACATCCTTCACACTGGAAG+TGG 0.522767 tig0026391:+41235 Msa1428610:CDS
CTATGGCTGTGAGGTCCCTA+AGG 0.525069 tig0026391:+41462 Msa1428610:CDS
GTTCCGGAAGTGATCTAGAC+GGG 0.525385 tig0026391:+39738 Msa1428610:CDS
CATGATCCAATACAATAGGT+TGG 0.527023 tig0026391:-39835 Msa1428610:intergenic
CGTTTCAGATTCGGTATGGC+GGG 0.529342 tig0026391:+38620 Msa1428610:CDS
AGCTTTGCAAGCTCAATACA+TGG 0.531974 tig0026391:-41032 Msa1428610:intergenic
GGATCATGATGTTGAGATTG+AGG 0.532865 tig0026391:+39850 Msa1428610:CDS
CACGGATCCATTGGTCATCA+GGG 0.534429 tig0026391:-37541 Msa1428610:intergenic
AGAAGGAGAAAGCCAGGATG+AGG 0.535312 tig0026391:+41666 Msa1428610:CDS
AAATCAAGAAGGAGAAAGCC+AGG 0.535927 tig0026391:+41660 Msa1428610:CDS
CTGAAACTCTAAGCGTCAGC+AGG 0.536009 tig0026391:+38458 Msa1428610:CDS
ACTTACCGCCGATTCCATAA+GGG 0.536172 tig0026391:+38357 Msa1428610:CDS
ACATCGCCCGGGTGCAAGCA+AGG 0.536488 tig0026391:-39195 Msa1428610:intergenic
GATTGAGCTGCATCAACCAC+AGG 0.538892 tig0026391:+35961 Msa1428610:CDS
CGATATGTTGATGGAAATGA+CGG 0.541344 tig0026391:-38108 Msa1428610:intergenic
ACCTAGAACAATTGAACCAA+TGG 0.544402 tig0026391:+39799 Msa1428610:CDS
TGGGCAGAATCATACTCCAT+TGG 0.545458 tig0026391:-39815 Msa1428610:intergenic
ATTCGGTATGGCGGGTACAA+AGG 0.545736 tig0026391:+38628 Msa1428610:CDS
TATATCTTTGGATAACGGGT+TGG 0.546193 tig0026391:+38006 Msa1428610:CDS
TCCGCGTTTCAGATTCGGTA+TGG 0.546663 tig0026391:+38616 Msa1428610:CDS
TCCTTGAGGAGGAGCAACCA+TGG 0.549153 tig0026391:-37738 Msa1428610:intergenic
TAAGGAAAGAAGCGAGGAGT+TGG 0.550503 tig0026391:+41480 Msa1428610:CDS
GGTTCAATGAAGACGATACT+GGG 0.551204 tig0026391:+41501 Msa1428610:CDS
TTTAGCCACTTCCAGTGTGA+AGG 0.552840 tig0026391:-41240 Msa1428610:intergenic
TATACTAACAGATTCAACTA+AGG 0.553086 tig0026391:+38867 Msa1428610:CDS
CCACAAAAGTATACTTTGCA+TGG 0.555207 tig0026391:-38055 Msa1428610:intergenic
CCGCCGATTCCATAAGGGAA+TGG 0.555415 tig0026391:+38362 Msa1428610:CDS
TGGAATTGCGACAAAAGACT+AGG 0.562821 tig0026391:+39025 Msa1428610:CDS
CTTATCCACTCTTGATGTCA+AGG 0.563615 tig0026391:+38795 Msa1428610:CDS
AACTCAACCTTTATTCTGAG+TGG 0.564774 tig0026391:-37863 Msa1428610:intergenic
CCTTGAGGAGGAGCAACCAT+GGG 0.565071 tig0026391:-37737 Msa1428610:intergenic
AAACTGTCCAAGAATGCCCT+TGG 0.565377 tig0026391:-35767 Msa1428610:intergenic
GTGCAAAGCTGGCACATCCA+AGG 0.566277 tig0026391:-39232 Msa1428610:intergenic
TAAATCTTTCACCAAAAGAA+GGG 0.566931 tig0026391:+41424 Msa1428610:CDS
GTAGAGCATTATACTGGTGA+AGG 0.567027 tig0026391:+35563 Msa1428610:CDS
TGAAATTATTCCTGACGCGA+AGG 0.567517 tig0026391:+38489 Msa1428610:CDS
GTTAATTCCTTGGTTCAGCA+CGG 0.568116 tig0026391:+37791 Msa1428610:CDS
ATTGGTTCAATTGTTCTAGG+TGG 0.568502 tig0026391:-39797 Msa1428610:intergenic
ATTCTCTATATTATGGAAGG+TGG 0.569959 tig0026391:+35835 Msa1428610:CDS
TCTCTGTAATAGTTCTTCAA+AGG 0.570243 tig0026391:-37515 Msa1428610:intergenic
AAATCCATCAACTTCCATGT+CGG 0.570409 tig0026391:-41276 Msa1428610:intergenic
ATATCCAGATTTCATGGAGA+AGG 0.571977 tig0026391:+41127 Msa1428610:CDS
CAAGGAATTTCAACAAAGGA+CGG 0.575158 tig0026391:+41206 Msa1428610:CDS
AAACTGTTTAGGGAAATTCA+AGG 0.575396 tig0026391:+41188 Msa1428610:CDS
CGGGTTGGTATATGTTCGCA+GGG 0.575499 tig0026391:+38021 Msa1428610:CDS
GTTCACGAGGTATGACGGCT+GGG 0.577353 tig0026391:-41091 Msa1428610:intergenic
TTAATTCCTTGGTTCAGCAC+GGG 0.578889 tig0026391:+37792 Msa1428610:CDS
GACAACTTCACAGACGAGGT+TGG 0.580619 tig0026391:-38667 Msa1428610:intergenic
ACAAACCATAGTAACTATGA+TGG 0.581319 tig0026391:-41571 Msa1428610:intergenic
GAAAAGTTCACGAGGTATGA+CGG 0.581533 tig0026391:-41096 Msa1428610:intergenic
ACTGAATCAGAAATCCTAAG+TGG 0.581610 tig0026391:+41383 Msa1428610:CDS
AACTAGAACCTTAGAATATG+GGG 0.582040 tig0026391:+39092 Msa1428610:CDS
CATATGCAAAAGCTTCTGCT+TGG 0.582602 tig0026391:+41534 Msa1428610:CDS
TCAAAACACGAACATCGCCC+GGG 0.584003 tig0026391:-39206 Msa1428610:intergenic
TCTGTTATGAACCTGCAAGA+TGG 0.584270 tig0026391:+37927 Msa1428610:CDS
CCGTTATCCAAAGATATAGT+CGG 0.588330 tig0026391:-38001 Msa1428610:intergenic
GGTATTTGAATTCCTTGAGG+AGG 0.592430 tig0026391:-37749 Msa1428610:intergenic
TGCAAAGACTGTGTGTGCAT+TGG 0.592834 tig0026391:-40979 Msa1428610:intergenic
AAGATTCTCTATATTATGGA+AGG 0.592994 tig0026391:+35832 Msa1428610:CDS
AAAACATGTTACATTCATGA+TGG 0.597041 tig0026391:+35664 Msa1428610:CDS
TGTTCATTATGAGGAAATCG+AGG 0.599594 tig0026391:+37661 Msa1428610:CDS
TTTCACCAAAAGAAGGGATG+CGG 0.600513 tig0026391:+41430 Msa1428610:CDS
ACGTGTTTCATTTGTTGACG+AGG 0.601367 tig0026391:+38141 Msa1428610:CDS
GATGAGGATGCATTCTAGCA+TGG 0.601811 tig0026391:+41682 Msa1428610:CDS
TACCGAATCTGAAACGCGGA+TGG 0.603579 tig0026391:-38613 Msa1428610:intergenic
CCAAAAGGAAGAGCAATGAT+GGG 0.604423 tig0026391:+39057 Msa1428610:CDS
GAGATTCCCCTGATGACCAA+TGG 0.604946 tig0026391:+37534 Msa1428610:CDS
GTTGCTATGAAGATTAGAGT+AGG 0.605906 tig0026391:+35593 Msa1428610:CDS
AATGGTATTTGAATTCCTTG+AGG 0.606457 tig0026391:-37752 Msa1428610:intergenic
GAGATATTGATCCAAAGCCA+AGG 0.607190 tig0026391:+35750 Msa1428610:CDS
AGAAATGGCATAGATATTGG+TGG 0.607871 tig0026391:+38253 Msa1428610:CDS
AGATTCAACTAAGGCACATG+AGG 0.610998 tig0026391:+38876 Msa1428610:CDS
CTCCATTACATCCTTCACAC+TGG 0.614948 tig0026391:+41229 Msa1428610:CDS
TGTGCCAGCTTTGCACCACA+TGG 0.616325 tig0026391:+39239 Msa1428610:CDS
TCTTGAACTTGCCAGGAGAG+TGG 0.617568 tig0026391:+38564 Msa1428610:CDS
CTGAATCAGAAATCCTAAGT+GGG 0.618883 tig0026391:+41384 Msa1428610:CDS
TGGCGGGTACAAAGGAGTTG+TGG 0.620817 tig0026391:+38636 Msa1428610:CDS
TACCTAGCAGAACTAAATTG+CGG 0.623189 tig0026391:+35690 Msa1428610:CDS
AAGACACCCGTGCTGAACCA+AGG 0.623953 tig0026391:-37798 Msa1428610:intergenic
GATATAGTCGGTGACCGAGG+CGG 0.624049 tig0026391:-37989 Msa1428610:intergenic
GCGTTTCAGATTCGGTATGG+CGG 0.624067 tig0026391:+38619 Msa1428610:CDS
CCATTCCCTTATGGAATCGG+CGG 0.625630 tig0026391:-38362 Msa1428610:intergenic
CAGACACGTTCACAAAAGAA+GGG 0.626244 tig0026391:-35526 Msa1428610:intergenic
TGAAGTCACCAATATTCTCA+AGG 0.626654 tig0026391:+38921 Msa1428610:CDS
ACTGTCCTTGACATCAAGAG+TGG 0.630808 tig0026391:-38800 Msa1428610:intergenic
AAAGATATAGTCGGTGACCG+AGG 0.632533 tig0026391:-37992 Msa1428610:intergenic
AGTTGCGTGAGAACTCGCTA+TGG 0.633787 tig0026391:+38311 Msa1428610:CDS
CTCAAGGAGATGCTCATCTG+TGG 0.636405 tig0026391:+38937 Msa1428610:CDS
AATTGTCGATTGAGATAACA+AGG 0.636922 tig0026391:-38763 Msa1428610:intergenic
AGTAAATGGTAAACACACCA+TGG 0.638736 tig0026391:-41632 Msa1428610:intergenic
AATTCAAGGAATTTCAACAA+AGG 0.638787 tig0026391:+41202 Msa1428610:CDS
AGATATTGATCCAAAGCCAA+GGG 0.640291 tig0026391:+35751 Msa1428610:CDS
CCTGACGCGAAGGTTAAACA+TGG 0.640840 tig0026391:+38499 Msa1428610:CDS
ATGAAGATTAGAGTAGGCAA+AGG 0.643746 tig0026391:+35599 Msa1428610:CDS
AATCGAGGGTCAATACACAT+TGG 0.643950 tig0026391:+37676 Msa1428610:CDS
TCAGTGCAAATAATCCGCCT+CGG 0.645936 tig0026391:+37975 Msa1428610:CDS
GACTGCCCAATACAACTGCA+AGG 0.646493 tig0026391:-37578 Msa1428610:intergenic
AAGGAGTGAAATCTATCGCA+CGG 0.647159 tig0026391:-37559 Msa1428610:intergenic
CAATCCGGATGTTGTCCCCA+TGG 0.648780 tig0026391:+37721 Msa1428610:CDS
GTTCATTATGAGGAAATCGA+GGG 0.649092 tig0026391:+37662 Msa1428610:CDS
TGTTCCGGAAGTGATCTAGA+CGG 0.654419 tig0026391:+39737 Msa1428610:CDS
AACCGCAATTTAGTTCTGCT+AGG 0.654522 tig0026391:-35692 Msa1428610:intergenic
GGTCAATACACATTGGAGAG+CGG 0.662300 tig0026391:+37683 Msa1428610:CDS
ACGGATCCATTGGTCATCAG+GGG 0.664954 tig0026391:-37540 Msa1428610:intergenic
CAGTGACAACTTCACAGACG+AGG 0.667927 tig0026391:-38671 Msa1428610:intergenic
GTACAATGAAGGTATGCAGA+GGG 0.670976 tig0026391:+41592 Msa1428610:CDS
GATTCCATAAGGGAATGGAT+GGG 0.681968 tig0026391:+38367 Msa1428610:CDS
ATTGAGCTGCATCAACCACA+GGG 0.682058 tig0026391:+35962 Msa1428610:CDS
TGTACAATGAAGGTATGCAG+AGG 0.691080 tig0026391:+41591 Msa1428610:CDS
GCCAGCTTTGCACCACATGG+TGG 0.693121 tig0026391:+39242 Msa1428610:CDS
GGTCCCTAAGGAAAGAAGCG+AGG 0.698602 tig0026391:+41474 Msa1428610:CDS
AAACAACACAATCCACCATG+TGG 0.709334 tig0026391:-39254 Msa1428610:intergenic
TTATACTGGTGAAGGAAGTG+TGG 0.711055 tig0026391:+35571 Msa1428610:CDS
AAAGTCGTATGATCCCGACA+TGG 0.712915 tig0026391:+41262 Msa1428610:CDS
TTCCGGAAGTGATCTAGACG+GGG 0.717127 tig0026391:+39739 Msa1428610:CDS
TCTTTGGCGAAAAGTTCACG+AGG 0.719176 tig0026391:-41104 Msa1428610:intergenic
ATGCGATTACTATGGCTGTG+AGG 0.723294 tig0026391:+41453 Msa1428610:CDS
CTTGAGGAGGAGCAACCATG+GGG 0.730391 tig0026391:-37736 Msa1428610:intergenic
CGTCTGTGAAGTTGTCACTG+AGG 0.737656 tig0026391:+38674 Msa1428610:CDS
GCCATACCGAATCTGAAACG+CGG 0.743631 tig0026391:-38617 Msa1428600:intergenic
GAGGCGGATTATTTGCACTG+AGG 0.762972 tig0026391:-37973 Msa1428600:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTTTTTTTTTAATGAA+AGG - tig0026391:36297-36316 Msa1428610:intergenic 10.0%
!!! TTTTTTTTTTTTTTGTATAC+CGG + tig0026391:36638-36657 Msa1428610:intron 10.0%
!!! ATATGGAAATAATATTATTT+TGG + tig0026391:36735-36754 Msa1428610:intron 10.0%
!! AATTTCTTGATAAAATCTAA+GGG + tig0026391:36384-36403 Msa1428610:intron 15.0%
!!! TTTTTTTTTTTTTGTATACC+GGG + tig0026391:36639-36658 Msa1428610:intron 15.0%
!! TAGTTTATGGAATATTAATA+TGG + tig0026391:36718-36737 Msa1428610:intron 15.0%
!!! TATCATTTACAATGTTATTT+TGG + tig0026391:39599-39618 Msa1428610:intron 15.0%
!! AAAAAAAAAATGAAAAGAGA+GGG - tig0026391:39649-39668 Msa1428610:intergenic 15.0%
!! AAAAAAAAAAATGAAAAGAG+AGG - tig0026391:39650-39669 Msa1428610:intergenic 15.0%
!!! TTTTTCTTGTATTTTTTGTA+TGG + tig0026391:39905-39924 Msa1428610:intron 15.0%
!! TATGAATTATGAAAACAATT+TGG + tig0026391:40777-40796 Msa1428610:intron 15.0%
!!! GGTTTAAAACATTTAATGAA+AGG - tig0026391:36030-36049 Msa1428610:intergenic 20.0%
!! TCTATATGAATTATGAACAA+TGG + tig0026391:36140-36159 Msa1428610:intron 20.0%
!!! ATATCAAGAATGATTTTATC+AGG + tig0026391:36212-36231 Msa1428610:intron 20.0%
!! TAAATAAGACTGAAATCTAA+GGG - tig0026391:36270-36289 Msa1428610:intergenic 20.0%
!! ATAAATAAGACTGAAATCTA+AGG - tig0026391:36271-36290 Msa1428610:intergenic 20.0%
!! CAATTTCTTGATAAAATCTA+AGG + tig0026391:36383-36402 Msa1428610:intron 20.0%
!! CTGTATAATATAATAACACA+TGG - tig0026391:36900-36919 Msa1428610:intergenic 20.0%
!! ATTATATTATACAGCTAGAT+TGG + tig0026391:36906-36925 Msa1428610:intron 20.0%
!!! ATTTAGCCACATTTTTTATA+CGG - tig0026391:38402-38421 Msa1428610:intergenic 20.0%
!! TGATTCAGATAACATAAAAT+TGG + tig0026391:38714-38733 Msa1428610:CDS 20.0%
!!! TAACATAAAATTGGATGTTT+TGG + tig0026391:38723-38742 Msa1428610:CDS 20.0%
!!! CAATAGAATACTATTTTTCT+AGG + tig0026391:39335-39354 Msa1428610:intron 20.0%
!! AATATTTAAGTGATTGAACT+TGG + tig0026391:39412-39431 Msa1428610:intron 20.0%
!! TATAAAACTGTCTATTGATA+TGG + tig0026391:39676-39695 Msa1428610:intron 20.0%
!! ATAACTTAATTTCTAATACC+AGG + tig0026391:39699-39718 Msa1428610:intron 20.0%
!!! TTTATTTCTCTGTGTTAATT+CGG - tig0026391:40057-40076 Msa1428610:intergenic 20.0%
!! TACAAATCAGATAATGTAAT+AGG + tig0026391:41164-41183 Msa1428610:CDS 20.0%
!! AGTAAAACAATTGAGTTGTA+TGG + tig0026391:35500-35519 Msa1428610:CDS 25.0%
!! ATATTTGTAGAGCATTATAC+TGG + tig0026391:35557-35576 Msa1428610:CDS 25.0%
! AAAACATGTTACATTCATGA+TGG + tig0026391:35664-35683 Msa1428610:CDS 25.0%
! GAACTCCTATTTAAAAGTTA+GGG + tig0026391:35718-35737 Msa1428610:CDS 25.0%
!! CATTTCCCTAACTTTTAAAT+AGG - tig0026391:35726-35745 Msa1428610:intergenic 25.0%
! CTATTTAAAAGTTAGGGAAA+TGG + tig0026391:35724-35743 Msa1428610:CDS 25.0%
! AGGAAAGATTCTCTATATTA+TGG + tig0026391:35828-35847 Msa1428610:CDS 25.0%
! AAGATTCTCTATATTATGGA+AGG + tig0026391:35832-35851 Msa1428610:CDS 25.0%
!!! GTTTGAACTTCTTATTTTCA+TGG - tig0026391:35913-35932 Msa1428610:intergenic 25.0%
! AGCTTTCATATGAGAATATT+TGG + tig0026391:35936-35955 Msa1428610:CDS 25.0%
! AAAAAGGAAAATGAAGAACA+TGG - tig0026391:36051-36070 Msa1428610:intergenic 25.0%
! ATATGAATTATGAACAATGG+TGG + tig0026391:36143-36162 Msa1428610:intron 25.0%
!! TATTGGCTAACATTAATTTC+AGG + tig0026391:36359-36378 Msa1428610:intron 25.0%
!! TGTCATGATATATCTGATTT+TGG + tig0026391:36486-36505 Msa1428610:intron 25.0%
!! AGCTCTTAGGTTTTTATATT+GGG + tig0026391:37028-37047 Msa1428610:intron 25.0%
! AAAGTTGAAGAGATCAAAAT+TGG - tig0026391:37326-37345 Msa1428610:intergenic 25.0%
! ACAAATAAGATTCACCATAT+GGG - tig0026391:37415-37434 Msa1428610:intergenic 25.0%
! AACAAATAAGATTCACCATA+TGG - tig0026391:37416-37435 Msa1428610:intergenic 25.0%
! ACTTTAAACAAGATGTCAAA+TGG - tig0026391:37773-37792 Msa1428610:intergenic 25.0%
!! CTTGTTTAAAGTTAATTCCT+TGG + tig0026391:37781-37800 Msa1428610:CDS 25.0%
! AGAAAAGATGTACTATTCAA+AGG + tig0026391:37901-37920 Msa1428610:CDS 25.0%
! AAAAGTTATCGATATGTTGA+TGG - tig0026391:38120-38139 Msa1428610:intergenic 25.0%
! AGAAATACGTGAAGATAAAT+CGG - tig0026391:38188-38207 Msa1428610:intergenic 25.0%
!! TTTTAGCCGTATAAAAAATG+TGG + tig0026391:38393-38412 Msa1428610:CDS 25.0%
! TATACTAACAGATTCAACTA+AGG + tig0026391:38867-38886 Msa1428610:CDS 25.0%
! ACTAGGATATTTATTCCAAA+AGG + tig0026391:39042-39061 Msa1428610:CDS 25.0%
! AAACTAGAACCTTAGAATAT+GGG + tig0026391:39091-39110 Msa1428610:CDS 25.0%
! TTGTTCAATATTCTAGCAAT+AGG + tig0026391:39121-39140 Msa1428610:CDS 25.0%
!! AATACAAGAAAAAGTGCATA+TGG - tig0026391:39898-39917 Msa1428610:intergenic 25.0%
! TCTTCTACAATATTCAAGAA+TGG + tig0026391:40018-40037 Msa1428610:intron 25.0%
!! TTATTTCTCTGTGTTAATTC+GGG - tig0026391:40056-40075 Msa1428610:intergenic 25.0%
! GTTACAATAGAAAAAGAAAG+TGG - tig0026391:40250-40269 Msa1428610:intergenic 25.0%
!!! CATGATTTTGTTTTCCTTTT+CGG + tig0026391:40369-40388 Msa1428610:intron 25.0%
! AATAAGCTAAAAACAGCTTA+TGG - tig0026391:40719-40738 Msa1428610:intergenic 25.0%
! ACTTAATTAAGTATTCAAGC+AGG + tig0026391:40870-40889 Msa1428610:intron 25.0%
! CTTAATTAAGTATTCAAGCA+GGG + tig0026391:40871-40890 Msa1428610:intron 25.0%
! ATGTAATAGGAAAACTGTTT+AGG + tig0026391:41177-41196 Msa1428610:CDS 25.0%
! TGTAATAGGAAAACTGTTTA+GGG + tig0026391:41178-41197 Msa1428610:CDS 25.0%
! AATTCAAGGAATTTCAACAA+AGG + tig0026391:41202-41221 Msa1428610:CDS 25.0%
! ATAATTGGATTTGTAGTAGA+AGG - tig0026391:41321-41340 Msa1428610:intergenic 25.0%
!! TTTTCATAATATTCCCACTT+AGG - tig0026391:41400-41419 Msa1428610:intergenic 25.0%
! AAGTGGGAATATTATGAAAA+TGG + tig0026391:41400-41419 Msa1428610:CDS 25.0%
! TAAATCTTTCACCAAAAGAA+GGG + tig0026391:41424-41443 Msa1428610:CDS 25.0%
!! TCTTGATTTGAACAAGTAAA+TGG - tig0026391:41649-41668 Msa1428610:intergenic 25.0%
! TTTACTTGTTCAAATCAAGA+AGG + tig0026391:41649-41668 Msa1428610:CDS 25.0%
TGAATAATTGCAAATGCTCT+TGG - tig0026391:35632-35651 Msa1428610:intergenic 30.0%
GGAACTCCTATTTAAAAGTT+AGG + tig0026391:35717-35736 Msa1428610:CDS 30.0%
! GACGATGTTAAACTGTATTT+TGG + tig0026391:35791-35810 Msa1428610:CDS 30.0%
ATTCTCTATATTATGGAAGG+TGG + tig0026391:35835-35854 Msa1428610:CDS 30.0%
!! TGCAAAGTATCTATTGATTC+AGG + tig0026391:35991-36010 Msa1428610:CDS 30.0%
AGAAAGATTCAAGAATGACA+TGG - tig0026391:36421-36440 Msa1428610:intergenic 30.0%
!!! CTTTGAGTAGTTTTGTCTTT+AGG + tig0026391:36581-36600 Msa1428610:intron 30.0%
TAAACTAACAATGTTCCACA+AGG - tig0026391:36705-36724 Msa1428610:intergenic 30.0%
! TGTGGAACATTGTTAGTTTA+TGG + tig0026391:36705-36724 Msa1428610:intron 30.0%
!!! TTATTTTGGTTTGTAGCTCA+AGG + tig0026391:36749-36768 Msa1428610:intron 30.0%
! ATTGGTTTATGGTACATCTA+TGG + tig0026391:36862-36881 Msa1428610:intron 30.0%
TGTGGAAGAAATGATATTGA+AGG - tig0026391:37000-37019 Msa1428610:intergenic 30.0%
! CAGCTCTTAGGTTTTTATAT+TGG + tig0026391:37027-37046 Msa1428610:intron 30.0%
GAAATAAAAATTGCTGCTGT+TGG - tig0026391:37217-37236 Msa1428610:intergenic 30.0%
CTCTTCTGTTTGTAGTTAAT+TGG + tig0026391:37437-37456 Msa1428610:intron 30.0%
! TCATATACACTTGTTGATGT+AGG - tig0026391:37491-37510 Msa1428610:intergenic 30.0%
TCTCTGTAATAGTTCTTCAA+AGG - tig0026391:37518-37537 Msa1428610:intergenic 30.0%
! ACACAGTTTTCCTTGAAATT+CGG - tig0026391:37644-37663 Msa1428610:intergenic 30.0%
AATGGTATTTGAATTCCTTG+AGG - tig0026391:37755-37774 Msa1428610:intergenic 30.0%
CAGAGATTAATGTCTCAAAT+CGG + tig0026391:38080-38099 Msa1428610:CDS 30.0%
AGAGATTAATGTCTCAAATC+GGG + tig0026391:38081-38100 Msa1428610:CDS 30.0%
! TCTTCACGTATTTCTAAGAA+TGG + tig0026391:38193-38212 Msa1428610:CDS 30.0%
! CTTCACGTATTTCTAAGAAT+GGG + tig0026391:38194-38213 Msa1428610:CDS 30.0%
ATTCTTTCCATCCTTAGAAA+TGG + tig0026391:38238-38257 Msa1428610:CDS 30.0%
! CAATATCTATGCCATTTCTA+AGG - tig0026391:38252-38271 Msa1428610:intergenic 30.0%
CTTAGAAATGGCATAGATAT+TGG + tig0026391:38250-38269 Msa1428610:CDS 30.0%
! AATTGTCGATTGAGATAACA+AGG - tig0026391:38766-38785 Msa1428610:intergenic 30.0%
ATTTAGGGAATCAAAGTTGT+TGG + tig0026391:39005-39024 Msa1428610:CDS 30.0%
GAAACTAGAACCTTAGAATA+TGG + tig0026391:39090-39109 Msa1428610:CDS 30.0%
AACTAGAACCTTAGAATATG+GGG + tig0026391:39092-39111 Msa1428610:CDS 30.0%
AAAAACTTCCCCATATTCTA+AGG - tig0026391:39103-39122 Msa1428610:intergenic 30.0%
!!! TGTGTTGTTTTTCCTCAAAA+AGG + tig0026391:39267-39286 Msa1428610:CDS 30.0%
ATTCTATTGATCATGCACAA+TGG - tig0026391:39324-39343 Msa1428610:intergenic 30.0%
!! GAAAACTTTAAGTGTTGGAT+TGG - tig0026391:39513-39532 Msa1428610:intergenic 30.0%
ATGCAGAAAACTTTAAGTGT+TGG - tig0026391:39518-39537 Msa1428610:intergenic 30.0%
TAAACTAGTAATGTCCAATG+AGG - tig0026391:39568-39587 Msa1428610:intergenic 30.0%
!!! TACAATGTTATTTTGGCAAG+TGG + tig0026391:39606-39625 Msa1428610:intron 30.0%
ATGATCCAATACAATAGGTT+GGG - tig0026391:39837-39856 Msa1428610:intergenic 30.0%
ACATCATGATCCAATACAAT+AGG - tig0026391:39842-39861 Msa1428610:intergenic 30.0%
CATATGGATGTAAAGTTCAA+AGG - tig0026391:39882-39901 Msa1428610:intergenic 30.0%
TTTGTTCAGTTAGAACCTTA+GGG - tig0026391:40179-40198 Msa1428610:intergenic 30.0%
ATTTGTTCAGTTAGAACCTT+AGG - tig0026391:40180-40199 Msa1428610:intergenic 30.0%
AGGTTATATAAAGGAATGAG+AGG - tig0026391:40225-40244 Msa1428610:intergenic 30.0%
AAAGTGGAGAGGTTATATAA+AGG - tig0026391:40234-40253 Msa1428610:intergenic 30.0%
AATAGAAAAAGAAAGTGGAG+AGG - tig0026391:40245-40264 Msa1428610:intergenic 30.0%
AGGATCTAATATGTATGCTT+AGG - tig0026391:40306-40325 Msa1428610:intergenic 30.0%
CATACATATTAGATCCTATC+AGG + tig0026391:40309-40328 Msa1428610:intron 30.0%
!!! ATTTTGTTTTCCTTTTCGGT+AGG + tig0026391:40373-40392 Msa1428610:intron 30.0%
AGACAATTTAGAAGAGCTTA+TGG + tig0026391:40675-40694 Msa1428610:intron 30.0%
!! ATGTTGGTAACATGGTTTAA+TGG + tig0026391:40896-40915 Msa1428610:intron 30.0%
ACTGTCATTGAGTATGTAAT+TGG - tig0026391:40946-40965 Msa1428610:intergenic 30.0%
CATGAAATCTGGATATTCTT+TGG - tig0026391:41123-41142 Msa1428610:intergenic 30.0%
CAAAGAATATCCAGATTTCA+TGG + tig0026391:41121-41140 Msa1428610:CDS 30.0%
AAACTGTTTAGGGAAATTCA+AGG + tig0026391:41188-41207 Msa1428610:CDS 30.0%
CTAAATCTTTCACCAAAAGA+AGG + tig0026391:41423-41442 Msa1428610:CDS 30.0%
ACTTACCATCATAGTTACTA+TGG + tig0026391:41566-41585 Msa1428610:CDS 30.0%
ACAAACCATAGTAACTATGA+TGG - tig0026391:41574-41593 Msa1428610:intergenic 30.0%
! TACTATGGTTTGTACAATGA+AGG + tig0026391:41581-41600 Msa1428610:CDS 30.0%
GTTGCTATGAAGATTAGAGT+AGG + tig0026391:35593-35612 Msa1428610:CDS 35.0%
ATGAAGATTAGAGTAGGCAA+AGG + tig0026391:35599-35618 Msa1428610:CDS 35.0%
!! CAATTTAGTTCTGCTAGGTA+AGG - tig0026391:35690-35709 Msa1428610:intergenic 35.0%
TACCTAGCAGAACTAAATTG+CGG + tig0026391:35690-35709 Msa1428610:CDS 35.0%
AGATATTGATCCAAAGCCAA+GGG + tig0026391:35751-35770 Msa1428610:CDS 35.0%
! TGGATGCTAGTGTAGATTTT+GGG + tig0026391:35855-35874 Msa1428610:CDS 35.0%
GGAAAGATTCAAGAATGACA+TGG + tig0026391:36233-36252 Msa1428610:intron 35.0%
!! TTCTCAAGAGCACTAATCTT+GGG - tig0026391:36841-36860 Msa1428610:intergenic 35.0%
ATTAGTGCTCTTGAGAACAT+TGG + tig0026391:36844-36863 Msa1428610:intron 35.0%
!! CTCTTGAGAACATTGGTTTA+TGG + tig0026391:36851-36870 Msa1428610:intron 35.0%
AGATTGGCAGTAAGATTTGA+AGG + tig0026391:36922-36941 Msa1428610:intron 35.0%
CTTGCTCAACATGAAATCAA+AGG - tig0026391:36973-36992 Msa1428610:intergenic 35.0%
TAAGCAGTGCTTATAAAGCT+TGG - tig0026391:37097-37116 Msa1428610:intergenic 35.0%
AATTTGATGCACATCCCATA+TGG + tig0026391:37398-37417 Msa1428610:intron 35.0%
ACATTACACTCAAAAACACG+AGG - tig0026391:37467-37486 Msa1428610:intergenic 35.0%
TTCGGAAAATCTCTGTTACT+AGG - tig0026391:37626-37645 Msa1428610:intergenic 35.0%
! CAGAGATTTTCCGAATTTCA+AGG + tig0026391:37631-37650 Msa1428610:CDS 35.0%
GGAAAACTGTGTTCATTATG+AGG + tig0026391:37652-37671 Msa1428610:CDS 35.0%
TGTTCATTATGAGGAAATCG+AGG + tig0026391:37661-37680 Msa1428610:CDS 35.0%
GTTCATTATGAGGAAATCGA+GGG + tig0026391:37662-37681 Msa1428610:CDS 35.0%
!!! GTCAACTTTTTCATGCAATC+CGG + tig0026391:37706-37725 Msa1428610:CDS 35.0%
AGTTGATCCACTCAGAATAA+AGG + tig0026391:37856-37875 Msa1428610:CDS 35.0%
AACTCAACCTTTATTCTGAG+TGG - tig0026391:37866-37885 Msa1428610:intergenic 35.0%
CCGTTATCCAAAGATATAGT+CGG - tig0026391:38004-38023 Msa1428610:intergenic 35.0%
CCGACTATATCTTTGGATAA+CGG + tig0026391:38001-38020 Msa1428610:CDS 35.0%
CGACTATATCTTTGGATAAC+GGG + tig0026391:38002-38021 Msa1428610:CDS 35.0%
!! TATATCTTTGGATAACGGGT+TGG + tig0026391:38006-38025 Msa1428610:CDS 35.0%
! CCACAAAAGTATACTTTGCA+TGG - tig0026391:38058-38077 Msa1428610:intergenic 35.0%
! CCATGCAAAGTATACTTTTG+TGG + tig0026391:38055-38074 Msa1428610:CDS 35.0%
! CGATTTGAGACATTAATCTC+TGG - tig0026391:38082-38101 Msa1428610:intergenic 35.0%
! CGATATGTTGATGGAAATGA+CGG - tig0026391:38111-38130 Msa1428610:intergenic 35.0%
! ATCTATGCCATTTCTAAGGA+TGG - tig0026391:38248-38267 Msa1428610:intergenic 35.0%
AGAAATGGCATAGATATTGG+TGG + tig0026391:38253-38272 Msa1428610:CDS 35.0%
TCCATCAGAGAAGACATATT+CGG - tig0026391:38530-38549 Msa1428610:intergenic 35.0%
TATGTCTTCTCTGATGGAAT+CGG + tig0026391:38532-38551 Msa1428610:CDS 35.0%
AAATATCTCTTGAACTTGCC+AGG + tig0026391:38557-38576 Msa1428610:CDS 35.0%
TGAAGTCACCAATATTCTCA+AGG + tig0026391:38921-38940 Msa1428610:CDS 35.0%
GAAAGAAATGGCTCAACATT+AGG - tig0026391:38970-38989 Msa1428610:intergenic 35.0%
TGCAGCATCATTGAAAGAAA+TGG - tig0026391:38982-39001 Msa1428610:intergenic 35.0%
AATGATGCTGCAGACATTTA+GGG + tig0026391:38990-39009 Msa1428610:CDS 35.0%
AGTCATTCTCGTGTAGTTAA+GGG + tig0026391:39150-39169 Msa1428610:CDS 35.0%
! TTTTTCCTCAAAAAGGTCAC+AGG + tig0026391:39274-39293 Msa1428610:CDS 35.0%
AGTCAATTCCATTTCCTCAT+TGG + tig0026391:39551-39570 Msa1428610:intron 35.0%
AGTAATGTCCAATGAGGAAA+TGG - tig0026391:39562-39581 Msa1428610:intergenic 35.0%
! ATTGGTTCAATTGTTCTAGG+TGG - tig0026391:39800-39819 Msa1428610:intergenic 35.0%
ACCTAGAACAATTGAACCAA+TGG + tig0026391:39799-39818 Msa1428610:CDS 35.0%
!! TCCATTGGTTCAATTGTTCT+AGG - tig0026391:39803-39822 Msa1428610:intergenic 35.0%
CATGATCCAATACAATAGGT+TGG - tig0026391:39838-39857 Msa1428610:intergenic 35.0%
!! AGCTTTTGCTTTGGGTTATA+GGG - tig0026391:40122-40141 Msa1428610:intergenic 35.0%
! AGAGAAATGTTACTTCTCTG+AGG - tig0026391:40145-40164 Msa1428610:intergenic 35.0%
! ACACTGGTAATGTCAAACAT+TGG - tig0026391:40589-40608 Msa1428610:intergenic 35.0%
GTCAAAGTCAATGCTTCATA+GGG + tig0026391:40638-40657 Msa1428610:intron 35.0%
TACATACTCAATGACAGTCT+TGG + tig0026391:40948-40967 Msa1428610:CDS 35.0%
ATATCCAGATTTCATGGAGA+AGG + tig0026391:41127-41146 Msa1428610:CDS 35.0%
CAAGGAATTTCAACAAAGGA+CGG + tig0026391:41206-41225 Msa1428610:CDS 35.0%
AAATCCATCAACTTCCATGT+CGG - tig0026391:41279-41298 Msa1428610:intergenic 35.0%
!! CATGGAAGTTGATGGATTTA+TGG + tig0026391:41280-41299 Msa1428610:CDS 35.0%
ATCCAATTATGACGAGAAGT+TGG + tig0026391:41331-41350 Msa1428610:CDS 35.0%
TCCAATTATGACGAGAAGTT+GGG + tig0026391:41332-41351 Msa1428610:CDS 35.0%
ACTGAATCAGAAATCCTAAG+TGG + tig0026391:41383-41402 Msa1428610:CDS 35.0%
CTGAATCAGAAATCCTAAGT+GGG + tig0026391:41384-41403 Msa1428610:CDS 35.0%
! ACCATTTTCTAAGCTTTCCA+TGG + tig0026391:41615-41634 Msa1428610:CDS 35.0%
ACCATGGAAAGCTTAGAAAA+TGG - tig0026391:41619-41638 Msa1428610:intergenic 35.0%
AGTAAATGGTAAACACACCA+TGG - tig0026391:41635-41654 Msa1428610:intergenic 35.0%
CAGACACGTTCACAAAAGAA+GGG - tig0026391:35529-35548 Msa1428610:intergenic 40.0%
TCAGACACGTTCACAAAAGA+AGG - tig0026391:35530-35549 Msa1428610:intergenic 40.0%
! GTAGAGCATTATACTGGTGA+AGG + tig0026391:35563-35582 Msa1428610:CDS 40.0%
TTATACTGGTGAAGGAAGTG+TGG + tig0026391:35571-35590 Msa1428610:CDS 40.0%
!! AACCGCAATTTAGTTCTGCT+AGG - tig0026391:35695-35714 Msa1428610:intergenic 40.0%
AGCAGAACTAAATTGCGGTT+CGG + tig0026391:35695-35714 Msa1428610:CDS 40.0%
GAGATATTGATCCAAAGCCA+AGG + tig0026391:35750-35769 Msa1428610:CDS 40.0%
!! TTTTGGCTGTCAGATCTCAA+AGG + tig0026391:35808-35827 Msa1428610:CDS 40.0%
! GTGGATGCTAGTGTAGATTT+TGG + tig0026391:35854-35873 Msa1428610:CDS 40.0%
!!! GCTAGTGTAGATTTTGGGAT+TGG + tig0026391:35860-35879 Msa1428610:CDS 40.0%
! TTGGGATTGGTATGAGAAAG+TGG + tig0026391:35873-35892 Msa1428610:CDS 40.0%
! TACTTTGCAGTTTTACCCTG+TGG - tig0026391:35980-35999 Msa1428610:intergenic 40.0%
TAGCCAATAAAATCTCAGCC+TGG - tig0026391:36348-36367 Msa1428610:intergenic 40.0%
AGATTCAAGAATGACATGGC+AGG - tig0026391:36237-36256 Msa1428610:intergenic 40.0%
AGTAGTCGTCTAACTTTGTC+AGG + tig0026391:36518-36537 Msa1428610:intron 40.0%
!! GTTCTCAAGAGCACTAATCT+TGG - tig0026391:36842-36861 Msa1428610:intergenic 40.0%
CCTTACAAAACCTGCTTGTA+CGG + tig0026391:37061-37080 Msa1428610:intron 40.0%
ACCCAAATGCTGCAATTAGA+TGG + tig0026391:37160-37179 Msa1428610:intron 40.0%
GCCATCTAATTGCAGCATTT+GGG - tig0026391:37164-37183 Msa1428610:intergenic 40.0%
AGCCATCTAATTGCAGCATT+TGG - tig0026391:37165-37184 Msa1428610:intergenic 40.0%
TGGAAATTCCGCTTTCATTG+TGG - tig0026391:37197-37216 Msa1428610:intergenic 40.0%
AAGGAGTGAAATCTATCGCA+CGG - tig0026391:37562-37581 Msa1428610:intergenic 40.0%
TTCACTCCTTGCAGTTGTAT+TGG + tig0026391:37572-37591 Msa1428610:CDS 40.0%
TCACTCCTTGCAGTTGTATT+GGG + tig0026391:37573-37592 Msa1428610:CDS 40.0%
AATCGAGGGTCAATACACAT+TGG + tig0026391:37676-37695 Msa1428610:CDS 40.0%
GGTATTTGAATTCCTTGAGG+AGG - tig0026391:37752-37771 Msa1428610:intergenic 40.0%
GTTAATTCCTTGGTTCAGCA+CGG + tig0026391:37791-37810 Msa1428610:CDS 40.0%
TTAATTCCTTGGTTCAGCAC+GGG + tig0026391:37792-37811 Msa1428610:CDS 40.0%
TCTGTTATGAACCTGCAAGA+TGG + tig0026391:37927-37946 Msa1428610:CDS 40.0%
! ACGTGTTTCATTTGTTGACG+AGG + tig0026391:38141-38160 Msa1428610:CDS 40.0%
! TTCATTTGTTGACGAGGAGT+TGG + tig0026391:38147-38166 Msa1428610:CDS 40.0%
ATGTTTGCTCGTACAACAAC+TGG + tig0026391:38334-38353 Msa1428610:CDS 40.0%
CATCCATTCCCTTATGGAAT+CGG - tig0026391:38368-38387 Msa1428610:intergenic 40.0%
GATTCCATAAGGGAATGGAT+GGG + tig0026391:38367-38386 Msa1428610:CDS 40.0%
GCTAAATATGCTGCTAGACT+TGG + tig0026391:38415-38434 Msa1428610:CDS 40.0%
TGAAATTATTCCTGACGCGA+AGG + tig0026391:38489-38508 Msa1428610:CDS 40.0%
ACCGAATATGTCTTCTCTGA+TGG + tig0026391:38526-38545 Msa1428610:CDS 40.0%
ATGTCTTCTCTGATGGAATC+GGG + tig0026391:38533-38552 Msa1428610:CDS 40.0%
!!! ACATTTTTTAGCCACTCTCC+TGG - tig0026391:38578-38597 Msa1428610:intergenic 40.0%
AGGAGAGTGGCTAAAAAATG+TGG + tig0026391:38577-38596 Msa1428610:CDS 40.0%
CTTATCCACTCTTGATGTCA+AGG + tig0026391:38795-38814 Msa1428610:CDS 40.0%
AGATTCAACTAAGGCACATG+AGG + tig0026391:38876-38895 Msa1428610:CDS 40.0%
! AACTAAGGCACATGAGGTTT+TGG + tig0026391:38882-38901 Msa1428610:CDS 40.0%
GAGCATCTCCTTGAGAATAT+TGG - tig0026391:38932-38951 Msa1428610:intergenic 40.0%
CAATGATGCTGCAGACATTT+AGG + tig0026391:38989-39008 Msa1428610:CDS 40.0%
TGGAATTGCGACAAAAGACT+AGG + tig0026391:39025-39044 Msa1428610:CDS 40.0%
TCCAAAAGGAAGAGCAATGA+TGG + tig0026391:39056-39075 Msa1428610:CDS 40.0%
CCAAAAGGAAGAGCAATGAT+GGG + tig0026391:39057-39076 Msa1428610:CDS 40.0%
CAGTCATTCTCGTGTAGTTA+AGG + tig0026391:39149-39168 Msa1428610:CDS 40.0%
TTCTCGTGTAGTTAAGGGTA+TGG + tig0026391:39155-39174 Msa1428610:CDS 40.0%
!!! TGTTCGTGTTTTGAAAGCCT+TGG + tig0026391:39215-39234 Msa1428610:CDS 40.0%
AAACAACACAATCCACCATG+TGG - tig0026391:39257-39276 Msa1428610:intergenic 40.0%
! ATCTACCTGTGACCTTTTTG+AGG - tig0026391:39282-39301 Msa1428610:intergenic 40.0%
GGACATCTACTTCGTTTGTT+GGG + tig0026391:39760-39779 Msa1428610:CDS 40.0%
TTCTGCCCAACCTATTGTAT+TGG + tig0026391:39829-39848 Msa1428610:CDS 40.0%
GGATCATGATGTTGAGATTG+AGG + tig0026391:39850-39869 Msa1428610:CDS 40.0%
!! GCTTTTGCTTTGGGTTATAG+GGG - tig0026391:40121-40140 Msa1428610:intergenic 40.0%
!! GAGCTTTTGCTTTGGGTTAT+AGG - tig0026391:40123-40142 Msa1428610:intergenic 40.0%
CAGTTAGAACCTTAGGGTTT+GGG - tig0026391:40173-40192 Msa1428610:intergenic 40.0%
TCAGTTAGAACCTTAGGGTT+TGG - tig0026391:40174-40193 Msa1428610:intergenic 40.0%
AGGAATGAGAGGATAGAGTT+AGG - tig0026391:40214-40233 Msa1428610:intergenic 40.0%
TGTAACCAACTCTCTCTAAG+TGG + tig0026391:40264-40283 Msa1428610:intron 40.0%
GTAACCAACTCTCTCTAAGT+GGG + tig0026391:40265-40284 Msa1428610:intron 40.0%
TAAGTGGGCCTTGAACATTT+GGG + tig0026391:40280-40299 Msa1428610:intron 40.0%
ATCCTATCAGGTGATCAATG+AGG + tig0026391:40321-40340 Msa1428610:intron 40.0%
TCCTATCAGGTGATCAATGA+GGG + tig0026391:40322-40341 Msa1428610:intron 40.0%
! TTTTCCTTTTCGGTAGGAGA+TGG + tig0026391:40379-40398 Msa1428610:intron 40.0%
GGTAATGTCAAACATTGGCA+CGG - tig0026391:40584-40603 Msa1428610:intergenic 40.0%
CAGTGTCAATGTGTTGTGTT+CGG + tig0026391:40603-40622 Msa1428610:intron 40.0%
GGTCAAAGTCAATGCTTCAT+AGG + tig0026391:40637-40656 Msa1428610:intron 40.0%
GTATTCAAGCAGGGATATGT+TGG + tig0026391:40880-40899 Msa1428610:intron 40.0%
GTAACATGGTTTAATGGTGC+AGG + tig0026391:40902-40921 Msa1428610:intron 40.0%
AGCTTTGCAAGCTCAATACA+TGG - tig0026391:41035-41054 Msa1428610:intergenic 40.0%
GAAAAGTTCACGAGGTATGA+CGG - tig0026391:41099-41118 Msa1428610:intergenic 40.0%
TTCCAGTGTGAAGGATGTAA+TGG - tig0026391:41234-41253 Msa1428610:intergenic 40.0%
AATCCATCAACTTCCATGTC+GGG - tig0026391:41278-41297 Msa1428610:intergenic 40.0%
TCCCAACTTCTCGTCATAAT+TGG - tig0026391:41336-41355 Msa1428610:intergenic 40.0%
!! GGAAATCTGATGGACTACTA+TGG + tig0026391:41353-41372 Msa1428610:CDS 40.0%
TTTCACCAAAAGAAGGGATG+CGG + tig0026391:41430-41449 Msa1428610:CDS 40.0%
TGGTTCAATGAAGACGATAC+TGG + tig0026391:41500-41519 Msa1428610:CDS 40.0%
GGTTCAATGAAGACGATACT+GGG + tig0026391:41501-41520 Msa1428610:CDS 40.0%
CATATGCAAAAGCTTCTGCT+TGG + tig0026391:41534-41553 Msa1428610:CDS 40.0%
! TGTACAATGAAGGTATGCAG+AGG + tig0026391:41591-41610 Msa1428610:CDS 40.0%
! GTACAATGAAGGTATGCAGA+GGG + tig0026391:41592-41611 Msa1428610:CDS 40.0%
AAATCAAGAAGGAGAAAGCC+AGG + tig0026391:41660-41679 Msa1428610:CDS 40.0%
GCAGAACTAAATTGCGGTTC+GGG + tig0026391:35696-35715 Msa1428610:CDS 45.0%
AAACTGTCCAAGAATGCCCT+TGG - tig0026391:35770-35789 Msa1428610:intergenic 45.0%
ATTGAGCTGCATCAACCACA+GGG + tig0026391:35962-35981 Msa1428610:CDS 45.0%
CAATAAAATCTCAGCCTGGC+CGG - tig0026391:36344-36363 Msa1428610:intergenic 45.0%
!! CCGTACAAGCAGGTTTTGTA+AGG - tig0026391:37064-37083 Msa1428610:intergenic 45.0%
ACAATTCTCACCGTACAAGC+AGG - tig0026391:37074-37093 Msa1428610:intergenic 45.0%
CACTGCTTATGCCATATCTC+CGG + tig0026391:37108-37127 Msa1428610:intron 45.0%
ACTGCTTATGCCATATCTCC+GGG + tig0026391:37109-37128 Msa1428610:intron 45.0%
TGTGTTGGAGGCTACAATGA+AGG + tig0026391:37135-37154 Msa1428610:intron 45.0%
TGCTGCAATTAGATGGCTAG+AGG + tig0026391:37167-37186 Msa1428610:intron 45.0%
GCTGCAATTAGATGGCTAGA+GGG + tig0026391:37168-37187 Msa1428610:intron 45.0%
CTGCAATTAGATGGCTAGAG+GGG + tig0026391:37169-37188 Msa1428610:intron 45.0%
TGCAATTAGATGGCTAGAGG+GGG + tig0026391:37170-37189 Msa1428610:intron 45.0%
AATCTATCGCACGGATCCAT+TGG - tig0026391:37553-37572 Msa1428610:intergenic 45.0%
GGTCAATACACATTGGAGAG+CGG + tig0026391:37683-37702 Msa1428610:CDS 45.0%
GTCAATACACATTGGAGAGC+GGG + tig0026391:37684-37703 Msa1428610:CDS 45.0%
TGATCTTTCAGCCATCTTGC+AGG - tig0026391:37941-37960 Msa1428610:intergenic 45.0%
TCAGTGCAAATAATCCGCCT+CGG + tig0026391:37975-37994 Msa1428610:CDS 45.0%
AAAGATATAGTCGGTGACCG+AGG - tig0026391:37995-38014 Msa1428610:intergenic 45.0%
! TCGGTCACCGACTATATCTT+TGG + tig0026391:37994-38013 Msa1428610:CDS 45.0%
!! ACTTACCGCCGATTCCATAA+GGG + tig0026391:38357-38376 Msa1428610:CDS 45.0%
CGATTCCATAAGGGAATGGA+TGG + tig0026391:38366-38385 Msa1428610:CDS 45.0%
ATCTCCCATCCATTCCCTTA+TGG - tig0026391:38374-38393 Msa1428610:intergenic 45.0%
! GCTAGACTTGGACAGTCTTT+TGG + tig0026391:38427-38446 Msa1428610:CDS 45.0%
ACTGTCCTTGACATCAAGAG+TGG - tig0026391:38803-38822 Msa1428610:intergenic 45.0%
!! GTTTTGGACGTGATGTGTTC+TGG + tig0026391:38898-38917 Msa1428610:CDS 45.0%
! CCCATCATTGCTCTTCCTTT+TGG - tig0026391:39060-39079 Msa1428610:intergenic 45.0%
GAAAAATCCTTGCTTGCACC+CGG + tig0026391:39188-39207 Msa1428610:CDS 45.0%
AAAAATCCTTGCTTGCACCC+GGG + tig0026391:39189-39208 Msa1428610:CDS 45.0%
TTCAAAACACGAACATCGCC+CGG - tig0026391:39210-39229 Msa1428610:intergenic 45.0%
TGTTCCGGAAGTGATCTAGA+CGG + tig0026391:39737-39756 Msa1428610:CDS 45.0%
GGGACATCTACTTCGTTTGT+TGG + tig0026391:39759-39778 Msa1428610:CDS 45.0%
TGGGCAGAATCATACTCCAT+TGG - tig0026391:39818-39837 Msa1428610:intergenic 45.0%
!! CTCTGAGGAGCTTTTGCTTT+GGG - tig0026391:40130-40149 Msa1428610:intergenic 45.0%
!! TCTCTGAGGAGCTTTTGCTT+TGG - tig0026391:40131-40150 Msa1428610:intergenic 45.0%
CTAAGTGGGCCTTGAACATT+TGG + tig0026391:40279-40298 Msa1428610:intron 45.0%
TGCTTAGGCCCAAATGTTCA+AGG - tig0026391:40291-40310 Msa1428610:intergenic 45.0%
CCTATCAGGTGATCAATGAG+GGG + tig0026391:40323-40342 Msa1428610:intron 45.0%
CTATCAGGTGATCAATGAGG+GGG + tig0026391:40324-40343 Msa1428610:intron 45.0%
TCATCCATCTCCTACCGAAA+AGG - tig0026391:40386-40405 Msa1428610:intergenic 45.0%
CGAACACAACACATTGACAC+TGG - tig0026391:40605-40624 Msa1428610:intergenic 45.0%
!! GCAGGGATATGTTGGTAACA+TGG + tig0026391:40888-40907 Msa1428610:intron 45.0%
ACATGGTTTAATGGTGCAGG+AGG + tig0026391:40905-40924 Msa1428610:intron 45.0%
TGCAAAGACTGTGTGTGCAT+TGG - tig0026391:40982-41001 Msa1428610:intergenic 45.0%
GGCTTAGACATTGCTTTAGC+AGG - tig0026391:41014-41033 Msa1428610:intergenic 45.0%
! GCAGTTGACTTTCCAAAGAC+CGG + tig0026391:41065-41084 Msa1428610:CDS 45.0%
TCTTTGGCGAAAAGTTCACG+AGG - tig0026391:41107-41126 Msa1428610:intergenic 45.0%
TCAGCCTTCTCCATGAAATC+TGG - tig0026391:41134-41153 Msa1428610:intergenic 45.0%
CTCCATTACATCCTTCACAC+TGG + tig0026391:41229-41248 Msa1428610:CDS 45.0%
TACATCCTTCACACTGGAAG+TGG + tig0026391:41235-41254 Msa1428610:CDS 45.0%
TTTAGCCACTTCCAGTGTGA+AGG - tig0026391:41243-41262 Msa1428610:intergenic 45.0%
AAAGTCGTATGATCCCGACA+TGG + tig0026391:41262-41281 Msa1428610:CDS 45.0%
CGAGAAGTTGGGAAATCTGA+TGG + tig0026391:41343-41362 Msa1428610:CDS 45.0%
ATGCGATTACTATGGCTGTG+AGG + tig0026391:41453-41472 Msa1428610:CDS 45.0%
ACTCCTCGCTTCTTTCCTTA+GGG - tig0026391:41480-41499 Msa1428610:intergenic 45.0%
AACTCCTCGCTTCTTTCCTT+AGG - tig0026391:41481-41500 Msa1428610:intergenic 45.0%
TAAGGAAAGAAGCGAGGAGT+TGG + tig0026391:41480-41499 Msa1428610:CDS 45.0%
GATGAGGATGCATTCTAGCA+TGG + tig0026391:41682-41701 Msa1428610:CDS 45.0%
TGGAACAAAGTTTCAGTCGC+AGG + tig0026391:41702-41721 Msa1428610:CDS 45.0%
!!! AACAAAATTTAAAATAAAAA+AGG - tig0026391:36067-36086 Msa1428610:intergenic 5.0%
!!! AGATATATATATATATTTTT+AGG + tig0026391:36179-36198 Msa1428610:intron 5.0%
!! TCCAAAGCCAAGGGCATTCT+TGG + tig0026391:35760-35779 Msa1428610:CDS 50.0%
TCCAAGAATGCCCTTGGCTT+TGG - tig0026391:35764-35783 Msa1428610:intergenic 50.0%
GATTGAGCTGCATCAACCAC+AGG + tig0026391:35961-35980 Msa1428610:CDS 50.0%
! CGGCCAGGCTGAGATTTTAT+TGG + tig0026391:36342-36361 Msa1428610:intron 50.0%
TTGTGCATGCAGAGGATACC+CGG - tig0026391:36660-36679 Msa1428610:intergenic 50.0%
ATCCTCTGCATGCACAACTG+CGG + tig0026391:36663-36682 Msa1428610:intron 50.0%
GACTAATCCATCGAGCCTTG+TGG + tig0026391:36687-36706 Msa1428610:intron 50.0%
CAATGTTCCACAAGGCTCGA+TGG - tig0026391:36697-36716 Msa1428610:intergenic 50.0%
CCTAAGAGCTGCAACTCTTG+TGG - tig0026391:37018-37037 Msa1428610:intergenic 50.0%
CCACAAGAGTTGCAGCTCTT+AGG + tig0026391:37015-37034 Msa1428610:intron 50.0%
CAACACATTGCCCGGAGATA+TGG - tig0026391:37122-37141 Msa1428610:intergenic 50.0%
CATATCTCCGGGCAATGTGT+TGG + tig0026391:37120-37139 Msa1428610:intron 50.0%
GAGATTCCCCTGATGACCAA+TGG + tig0026391:37534-37553 Msa1428610:CDS 50.0%
ACGGATCCATTGGTCATCAG+GGG - tig0026391:37543-37562 Msa1428610:intergenic 50.0%
CACGGATCCATTGGTCATCA+GGG - tig0026391:37544-37563 Msa1428610:intergenic 50.0%
GACTGCCCAATACAACTGCA+AGG - tig0026391:37581-37600 Msa1428610:intergenic 50.0%
!! GAGGCGGATTATTTGCACTG+AGG - tig0026391:37976-37995 Msa1428610:intergenic 50.0%
!! ACGGGTTGGTATATGTTCGC+AGG + tig0026391:38020-38039 Msa1428610:CDS 50.0%
!! CGGGTTGGTATATGTTCGCA+GGG + tig0026391:38021-38040 Msa1428610:CDS 50.0%
AGTTGCGTGAGAACTCGCTA+TGG + tig0026391:38311-38330 Msa1428610:CDS 50.0%
!! GACTTACCGCCGATTCCATA+AGG + tig0026391:38356-38375 Msa1428610:CDS 50.0%
CCATTCCCTTATGGAATCGG+CGG - tig0026391:38365-38384 Msa1428610:intergenic 50.0%
CTGAAACTCTAAGCGTCAGC+AGG + tig0026391:38458-38477 Msa1428610:CDS 50.0%
CCATGTTTAACCTTCGCGTC+AGG - tig0026391:38502-38521 Msa1428610:intergenic 50.0%
CCTGACGCGAAGGTTAAACA+TGG + tig0026391:38499-38518 Msa1428610:CDS 50.0%
TCTTGAACTTGCCAGGAGAG+TGG + tig0026391:38564-38583 Msa1428610:CDS 50.0%
TGCCATCCGCGTTTCAGATT+CGG + tig0026391:38611-38630 Msa1428610:CDS 50.0%
! TACCGAATCTGAAACGCGGA+TGG - tig0026391:38616-38635 Msa1428610:intergenic 50.0%
! TCCGCGTTTCAGATTCGGTA+TGG + tig0026391:38616-38635 Msa1428610:CDS 50.0%
! GCCATACCGAATCTGAAACG+CGG - tig0026391:38620-38639 Msa1428610:intergenic 50.0%
! GCGTTTCAGATTCGGTATGG+CGG + tig0026391:38619-38638 Msa1428610:CDS 50.0%
! CGTTTCAGATTCGGTATGGC+GGG + tig0026391:38620-38639 Msa1428610:CDS 50.0%
!! ATTCGGTATGGCGGGTACAA+AGG + tig0026391:38628-38647 Msa1428610:CDS 50.0%
GACAACTTCACAGACGAGGT+TGG - tig0026391:38670-38689 Msa1428610:intergenic 50.0%
CAGTGACAACTTCACAGACG+AGG - tig0026391:38674-38693 Msa1428610:intergenic 50.0%
CGTCTGTGAAGTTGTCACTG+AGG + tig0026391:38674-38693 Msa1428610:CDS 50.0%
CTCAAGGAGATGCTCATCTG+TGG + tig0026391:38937-38956 Msa1428610:CDS 50.0%
TCAAAACACGAACATCGCCC+GGG - tig0026391:39209-39228 Msa1428610:intergenic 50.0%
CCACATCCAAACGAGTGTTC+CGG + tig0026391:39722-39741 Msa1428610:CDS 50.0%
TCACTTCCGGAACACTCGTT+TGG - tig0026391:39731-39750 Msa1428610:intergenic 50.0%
GTTCCGGAAGTGATCTAGAC+GGG + tig0026391:39738-39757 Msa1428610:CDS 50.0%
TTCCGGAAGTGATCTAGACG+GGG + tig0026391:39739-39758 Msa1428610:CDS 50.0%
AAGGCCCACTTAGAGAGAGT+TGG - tig0026391:40272-40291 Msa1428610:intergenic 50.0%
CCCCTCATTGATCACCTGAT+AGG - tig0026391:40326-40345 Msa1428610:intergenic 50.0%
!! TTGTGTTCGGTGTCTGTGTC+AGG + tig0026391:40616-40635 Msa1428610:intron 50.0%
TGGTTTAATGGTGCAGGAGG+TGG + tig0026391:40908-40927 Msa1428610:intron 50.0%
TTTAATGGTGCAGGAGGTGG+AGG + tig0026391:40911-40930 Msa1428610:intron 50.0%
GATCCCGACATGGAAGTTGA+TGG + tig0026391:41272-41291 Msa1428610:CDS 50.0%
GGATGCGGATGCGATTACTA+TGG + tig0026391:41445-41464 Msa1428610:CDS 50.0%
AGAAGGAGAAAGCCAGGATG+AGG + tig0026391:41666-41685 Msa1428610:CDS 50.0%
GCTAGAATGCATCCTCATCC+TGG - tig0026391:41681-41700 Msa1428610:intergenic 50.0%
ACCCACCACCCCATGATTTC+CGG + tig0026391:36322-36341 Msa1428610:intron 55.0%
TCAGCCTGGCCGGAAATCAT+GGG - tig0026391:36334-36353 Msa1428610:intergenic 55.0%
ATCTCCGGGCAATGTGTTGG+AGG + tig0026391:37123-37142 Msa1428610:intron 55.0%
GTAGCCTCCAACACATTGCC+CGG - tig0026391:37130-37149 Msa1428610:intergenic 55.0%
GAGGGGGACCACAATGAAAG+CGG + tig0026391:37186-37205 Msa1428610:intron 55.0%
GCACGGATCCATTGGTCATC+AGG - tig0026391:37545-37564 Msa1428610:intergenic 55.0%
CAATCCGGATGTTGTCCCCA+TGG + tig0026391:37721-37740 Msa1428610:CDS 55.0%
GCAACCATGGGGACAACATC+CGG - tig0026391:37728-37747 Msa1428610:intergenic 55.0%
CTTGAGGAGGAGCAACCATG+GGG - tig0026391:37739-37758 Msa1428610:intergenic 55.0%
CCTTGAGGAGGAGCAACCAT+GGG - tig0026391:37740-37759 Msa1428610:intergenic 55.0%
TCCTTGAGGAGGAGCAACCA+TGG - tig0026391:37741-37760 Msa1428610:intergenic 55.0%
AAGACACCCGTGCTGAACCA+AGG - tig0026391:37801-37820 Msa1428610:intergenic 55.0%
GTTCAGCACGGGTGTCTTTC+AGG + tig0026391:37803-37822 Msa1428610:CDS 55.0%
GATATAGTCGGTGACCGAGG+CGG - tig0026391:37992-38011 Msa1428610:intergenic 55.0%
!! CCGCCGATTCCATAAGGGAA+TGG + tig0026391:38362-38381 Msa1428610:CDS 55.0%
! TGGCGGGTACAAAGGAGTTG+TGG + tig0026391:38636-38655 Msa1428610:CDS 55.0%
GTGCAAAGCTGGCACATCCA+AGG - tig0026391:39235-39254 Msa1428610:intergenic 55.0%
TGTGCCAGCTTTGCACCACA+TGG + tig0026391:39239-39258 Msa1428610:CDS 55.0%
TCCACCATGTGGTGCAAAGC+TGG - tig0026391:39246-39265 Msa1428610:intergenic 55.0%
ACACTCGTTTGGATGTGGCC+TGG - tig0026391:39720-39739 Msa1428610:intergenic 55.0%
CCGGAACACTCGTTTGGATG+TGG - tig0026391:39725-39744 Msa1428610:intergenic 55.0%
GTCCCCGTCTAGATCACTTC+CGG - tig0026391:39744-39763 Msa1428610:intergenic 55.0%
CTCTCTCTGCCCAAACCCTA+AGG + tig0026391:40161-40180 Msa1428610:intron 55.0%
TCAAACATTGGCACGGCGCA+CGG - tig0026391:40577-40596 Msa1428610:intergenic 55.0%
AGGTATGACGGCTGGGATAC+CGG - tig0026391:41087-41106 Msa1428610:intergenic 55.0%
GTTCACGAGGTATGACGGCT+GGG - tig0026391:41094-41113 Msa1428610:intergenic 55.0%
AGTTCACGAGGTATGACGGC+TGG - tig0026391:41095-41114 Msa1428610:intergenic 55.0%
! CGCATCCGCATCCCTTCTTT+TGG - tig0026391:41438-41457 Msa1428610:intergenic 55.0%
CTATGGCTGTGAGGTCCCTA+AGG + tig0026391:41462-41481 Msa1428610:CDS 55.0%
GGTCCCTAAGGAAAGAAGCG+AGG + tig0026391:41474-41493 Msa1428610:CDS 55.0%
GCCGGAAATCATGGGGTGGT+GGG - tig0026391:36326-36345 Msa1428610:intergenic 60.0%
CAGCCTGGCCGGAAATCATG+GGG - tig0026391:36333-36352 Msa1428610:intergenic 60.0%
CTCAGCCTGGCCGGAAATCA+TGG - tig0026391:36335-36354 Msa1428610:intergenic 60.0%
CTCCGCAGTTGTGCATGCAG+AGG - tig0026391:36668-36687 Msa1428610:intergenic 60.0%
CCCATGGTTGCTCCTCCTCA+AGG + tig0026391:37737-37756 Msa1428610:CDS 60.0%
GCCAGCTTTGCACCACATGG+TGG + tig0026391:39242-39261 Msa1428610:CDS 60.0%
ACGGCTGGGATACCGGTCTT+TGG - tig0026391:41080-41099 Msa1428610:intergenic 60.0%
GGCCGGAAATCATGGGGTGG+TGG - tig0026391:36327-36346 Msa1428610:intergenic 65.0%
CCTGGCCGGAAATCATGGGG+TGG - tig0026391:36330-36349 Msa1428610:intergenic 65.0%
CCACCCCATGATTTCCGGCC+AGG + tig0026391:36327-36346 Msa1428610:intron 65.0%
ACATCGCCCGGGTGCAAGCA+AGG - tig0026391:39198-39217 Msa1428610:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026391 gene 35491 41739 35491 ID=Msa1428610;Name=Msa1428610
tig0026391 mRNA 35491 41739 35491 ID=Msa1428610-mRNA-1;Parent=Msa1428610;Name=Msa1428610-mRNA-1;_AED=0.55;_eAED=0.55;_QI=0|0|0|0.25|1|1|4|0|1110
tig0026391 exon 35491 36012 35491 ID=Msa1428610-mRNA-1:exon:6060;Parent=Msa1428610-mRNA-1
tig0026391 exon 37452 39295 37452 ID=Msa1428610-mRNA-1:exon:6061;Parent=Msa1428610-mRNA-1
tig0026391 exon 39721 39871 39721 ID=Msa1428610-mRNA-1:exon:6062;Parent=Msa1428610-mRNA-1
tig0026391 exon 40924 41739 40924 ID=Msa1428610-mRNA-1:exon:6063;Parent=Msa1428610-mRNA-1
tig0026391 CDS 35491 36012 35491 ID=Msa1428610-mRNA-1:cds;Parent=Msa1428610-mRNA-1
tig0026391 CDS 37452 39295 37452 ID=Msa1428610-mRNA-1:cds;Parent=Msa1428610-mRNA-1
tig0026391 CDS 39721 39871 39721 ID=Msa1428610-mRNA-1:cds;Parent=Msa1428610-mRNA-1
tig0026391 CDS 40924 41739 40924 ID=Msa1428610-mRNA-1:cds;Parent=Msa1428610-mRNA-1
Gene Sequence

>Msa1428610

ATGGGTAAAAGTAAAACAATTGAGTTGTATGGATTCCCTTCTTTTGTGAACGTGTCTGAAGTAAAGATATTTGTAGAGCATTATACTGGTGAAGGAAGTGTGGTTGCTATGAAGATTAGAGTAGGCAAAGGACAGAATCCAAGAGCATTTGCAATTATTCAATTCACTGCTGCAAAACATGTTACATTCATGATGGCCTTACCTAGCAGAACTAAATTGCGGTTCGGGAACTCCTATTTAAAAGTTAGGGAAATGGAAAGAGATATTGATCCAAAGCCAAGGGCATTCTTGGACAGTTTAGACGATGTTAAACTGTATTTTGGCTGTCAGATCTCAAAGGAAAGATTCTCTATATTATGGAAGGTGGATGCTAGTGTAGATTTTGGGATTGGTATGAGAAAGTGGCGATTCTCTATGCTCCATGAAAATAAGAAGTTCAAACTTGAGCTTTCATATGAGAATATTTGGAAGATTGAGCTGCATCAACCACAGGGTAAAACTGCAAAGTATCTATTGATTCAGTTAATTGGTGCTCCTCGTGTTTTTGAGTGTAATGTTCCTACATCAACAAGTGTATATGAAGATCCTTTGAAGAACTATTACAGAGATTCCCCTGATGACCAATGGATCCGTGCGATAGATTTCACTCCTTGCAGTTGTATTGGGCAGTCTTCTGCTATATGTCTAGAGCTTCCTAGTAACAGAGATTTTCCGAATTTCAAGGAAAACTGTGTTCATTATGAGGAAATCGAGGGTCAATACACATTGGAGAGCGGGTCAACTTTTTCATGCAATCCGGATGTTGTCCCCATGGTTGCTCCTCCTCAAGGAATTCAAATACCATTTGACATCTTGTTTAAAGTTAATTCCTTGGTTCAGCACGGGTGTCTTTCAGGTTCTGAACTTGATAATGCTTTCTATCGTCTAGTTGATCCACTCAGAATAAAGGTTGAGTTTATCGAACATGCTTTAGAAAAGATGTACTATTCAAAGGATTTCTGTTATGAACCTGCAAGATGGCTGAAAGATCACTACAGAATGTACCTCAGTGCAAATAATCCGCCTCGGTCACCGACTATATCTTTGGATAACGGGTTGGTATATGTTCGCAGGGTTCAGATAACACCATGCAAAGTATACTTTTGTGGTCCAGAGATTAATGTCTCAAATCGGGTTCTCCGTCATTTCCATCAACATATCGATAACTTTTTACGTGTTTCATTTGTTGACGAGGAGTTGGATAATATGTATTCAGCCGATTTATCTTCACGTATTTCTAAGAATGGGAGAACTGAGATATATTACAGAATTCTTTCCATCCTTAGAAATGGCATAGATATTGGTGGTATGAAGTTTGAATTTCTAGCTTTCTCATCAAGTCAGTTGCGTGAGAACTCGCTATGGATGTTTGCTCGTACAACAACTGGACTTACCGCCGATTCCATAAGGGAATGGATGGGAGATTTTAGCCGTATAAAAAATGTGGCTAAATATGCTGCTAGACTTGGACAGTCTTTTGGTTCGTCTACTGAAACTCTAAGCGTCAGCAGGAACGAAATTGAAATTATTCCTGACGCGAAGGTTAAACATGGTGCAACCGAATATGTCTTCTCTGATGGAATCGGGAAAATATCTCTTGAACTTGCCAGGAGAGTGGCTAAAAAATGTGGTCATGATTCAATGCCATCCGCGTTTCAGATTCGGTATGGCGGGTACAAAGGAGTTGTGGCTGTTGATCCAACCTCGTCTGTGAAGTTGTCACTGAGGAAGAGTATGCACAAGTATGATTCAGATAACATAAAATTGGATGTTTTGGCATGCAGTAAGTTTCAGCCTTGTTATCTCAATCGACAATTGATTACTCTCTTATCCACTCTTGATGTCAAGGACAGTGTTTTTGAGAAAAAACAAAAAGAAGCTGTTACTCAACTGAACACTATACTAACAGATTCAACTAAGGCACATGAGGTTTTGGACGTGATGTGTTCTGGTGAAGTCACCAATATTCTCAAGGAGATGCTCATCTGTGGCTACAAGCCTAATGTTGAGCCATTTCTTTCAATGATGCTGCAGACATTTAGGGAATCAAAGTTGTTGGAATTGCGACAAAAGACTAGGATATTTATTCCAAAAGGAAGAGCAATGATGGGAGTTCTAGATGAAACTAGAACCTTAGAATATGGGGAAGTTTTTGTTCAATATTCTAGCAATAGGTTCAGCAGTCATTCTCGTGTAGTTAAGGGTATGGTAGTAGTAGCGAAAAATCCTTGCTTGCACCCGGGCGATGTTCGTGTTTTGAAAGCCTTGGATGTGCCAGCTTTGCACCACATGGTGGATTGTGTTGTTTTTCCTCAAAAAGGTCACAGGCCACATCCAAACGAGTGTTCCGGAAGTGATCTAGACGGGGACATCTACTTCGTTTGTTGGGATTCTGAATTGATTCCACCTAGAACAATTGAACCAATGGAGTATGATTCTGCCCAACCTATTGTATTGGATCATGATGTTGAGATTGAGGAGGTGGAGGAGTATTTCACCAATTACATACTCAATGACAGTCTTGGAATAATTGCCAATGCACACACAGTCTTTGCAGATAAAGAACCTGCTAAAGCAATGTCTAAGCCATGTATTGAGCTTGCAAAGCTATTCTCAATTGCAGTTGACTTTCCAAAGACCGGTATCCCAGCCGTCATACCTCGTGAACTTTTCGCCAAAGAATATCCAGATTTCATGGAGAAGGCTGACAAAACAACATACAAATCAGATAATGTAATAGGAAAACTGTTTAGGGAAATTCAAGGAATTTCAACAAAGGACGGCTCCATTACATCCTTCACACTGGAAGTGGCTAAAAAGTCGTATGATCCCGACATGGAAGTTGATGGATTTATGGATTATGTCGATGATGCCTTCTACTACAAATCCAATTATGACGAGAAGTTGGGAAATCTGATGGACTACTATGGTATCAAAACTGAATCAGAAATCCTAAGTGGGAATATTATGAAAATGGCTAAATCTTTCACCAAAAGAAGGGATGCGGATGCGATTACTATGGCTGTGAGGTCCCTAAGGAAAGAAGCGAGGAGTTGGTTCAATGAAGACGATACTGGGAGTGATGATGCATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCATAGTTACTATGGTTTGTACAATGAAGGTATGCAGAGGGACCATTTTCTAAGCTTTCCATGGTGTGTTTACCATTTACTTGTTCAAATCAAGAAGGAGAAAGCCAGGATGAGGATGCATTCTAGCATGGAACAAAGTTTCAGTCGCAGGTTGCGTCTTGACTGA
Protein sequence

>Msa1428610

MGKSKTIELYGFPSFVNVSEVKIFVEHYTGEGSVVAMKIRVGKGQNPRAFAIIQFTAAKHVTFMMALPSRTKLRFGNSYLKVREMERDIDPKPRAFLDSLDDVKLYFGCQISKERFSILWKVDASVDFGIGMRKWRFSMLHENKKFKLELSYENIWKIELHQPQGKTAKYLLIQLIGAPRVFECNVPTSTSVYEDPLKNYYRDSPDDQWIRAIDFTPCSCIGQSSAICLELPSNRDFPNFKENCVHYEEIEGQYTLESGSTFSCNPDVVPMVAPPQGIQIPFDILFKVNSLVQHGCLSGSELDNAFYRLVDPLRIKVEFIEHALEKMYYSKDFCYEPARWLKDHYRMYLSANNPPRSPTISLDNGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFHQHIDNFLRVSFVDEELDNMYSADLSSRISKNGRTEIYYRILSILRNGIDIGGMKFEFLAFSSSQLRENSLWMFARTTTGLTADSIREWMGDFSRIKNVAKYAARLGQSFGSSTETLSVSRNEIEIIPDAKVKHGATEYVFSDGIGKISLELARRVAKKCGHDSMPSAFQIRYGGYKGVVAVDPTSSVKLSLRKSMHKYDSDNIKLDVLACSKFQPCYLNRQLITLLSTLDVKDSVFEKKQKEAVTQLNTILTDSTKAHEVLDVMCSGEVTNILKEMLICGYKPNVEPFLSMMLQTFRESKLLELRQKTRIFIPKGRAMMGVLDETRTLEYGEVFVQYSSNRFSSHSRVVKGMVVVAKNPCLHPGDVRVLKALDVPALHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDSELIPPRTIEPMEYDSAQPIVLDHDVEIEEVEEYFTNYILNDSLGIIANAHTVFADKEPAKAMSKPCIELAKLFSIAVDFPKTGIPAVIPRELFAKEYPDFMEKADKTTYKSDNVIGKLFREIQGISTKDGSITSFTLEVAKKSYDPDMEVDGFMDYVDDAFYYKSNYDEKLGNLMDYYGIKTESEILSGNIMKMAKSFTKRRDADAITMAVRSLRKEARSWFNEDDTGSDDAYAKASAWYYVTYHHSYYGLYNEGMQRDHFLSFPWCVYHLLVQIKKEKARMRMHSSMEQSFSRRLRLD*