Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015580 | XP_013467061.1 | 99.224 | 773 | 5 | 1 | 1 | 772 | 1 | 773 | 0.0 | 1597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015580 | sp|Q8S403|PHO1_ARATH | 65.992 | 791 | 241 | 9 | 1 | 772 | 1 | 782 | 0.0 | 1058 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015580 | Msa0109740 | 0.927479 | 1.109587e-91 | -8.615850e-47 |
| Msa0015580 | Msa0156060 | 0.951799 | 9.502262e-110 | -8.615850e-47 |
| Msa0015580 | Msa0156100 | 0.949767 | 6.529894e-108 | -8.615850e-47 |
| Msa0015580 | Msa0191990 | 0.810422 | 1.162144e-50 | -8.615850e-47 |
| Msa0015580 | Msa0272600 | 0.805551 | 1.263879e-49 | -8.615850e-47 |
| Msa0015580 | Msa0312810 | 0.802343 | 5.867706e-49 | -8.615850e-47 |
| Msa0015580 | Msa0581570 | 0.827577 | 1.449153e-54 | -8.615850e-47 |
| Msa0015580 | Msa0931750 | 0.828492 | 8.723283e-55 | -8.615850e-47 |
| Msa0015580 | Msa1451520 | 0.800651 | 1.304318e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015580 | MtrunA17_Chr1g0166651 | 99.224 | 773 | 5 | 1 | 1 | 772 | 1 | 773 | 0.0 | 1597 |
| Msa0015580 | MtrunA17_Chr1g0187381 | 77.320 | 776 | 166 | 4 | 1 | 771 | 54 | 824 | 0.0 | 1241 |
| Msa0015580 | MtrunA17_Chr8g0368741 | 46.447 | 788 | 396 | 7 | 1 | 771 | 1 | 779 | 0.0 | 710 |
| Msa0015580 | MtrunA17_Chr5g0417841 | 32.650 | 781 | 482 | 11 | 4 | 771 | 3 | 752 | 4.57e-145 | 444 |
| Msa0015580 | MtrunA17_Chr2g0302531 | 34.724 | 815 | 469 | 21 | 2 | 772 | 1 | 796 | 2.11e-144 | 443 |
| Msa0015580 | MtrunA17_Chr7g0217801 | 33.881 | 791 | 492 | 14 | 2 | 772 | 1 | 780 | 1.08e-139 | 431 |
| Msa0015580 | MtrunA17_Chr7g0217771 | 39.205 | 352 | 204 | 5 | 429 | 772 | 1 | 350 | 2.49e-80 | 261 |
| Msa0015580 | MtrunA17_Chr7g0217821 | 35.977 | 353 | 216 | 5 | 429 | 772 | 1 | 352 | 4.85e-71 | 236 |
| Msa0015580 | MtrunA17_Chr7g0217831 | 32.487 | 394 | 234 | 11 | 2 | 380 | 1 | 377 | 1.55e-46 | 170 |
| Msa0015580 | MtrunA17_Chr7g0246941 | 29.446 | 343 | 207 | 14 | 424 | 747 | 76 | 402 | 4.45e-31 | 127 |
| Msa0015580 | MtrunA17_Chr2g0322931 | 27.419 | 372 | 233 | 13 | 404 | 754 | 91 | 446 | 2.12e-29 | 122 |
| Msa0015580 | MtrunA17_Chr7g0217781 | 32.143 | 196 | 115 | 3 | 188 | 380 | 7 | 187 | 3.21e-24 | 100 |
| Msa0015580 | MtrunA17_Chr7g0217791 | 32.895 | 152 | 93 | 5 | 2 | 145 | 1 | 151 | 2.26e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0015580 | AT3G23430.1 | 65.992 | 791 | 241 | 9 | 1 | 772 | 1 | 782 | 0.0 | 1058 |
| Msa0015580 | AT1G68740.1 | 46.809 | 799 | 383 | 11 | 1 | 772 | 1 | 784 | 0.0 | 684 |
| Msa0015580 | AT1G68740.2 | 45.068 | 730 | 359 | 11 | 1 | 703 | 1 | 715 | 0.0 | 585 |
| Msa0015580 | AT3G29060.1 | 32.527 | 827 | 463 | 13 | 2 | 767 | 1 | 793 | 1.03e-146 | 449 |
| Msa0015580 | AT1G35350.1 | 34.610 | 783 | 464 | 15 | 2 | 771 | 1 | 748 | 1.67e-144 | 442 |
| Msa0015580 | AT1G26730.1 | 34.363 | 777 | 460 | 14 | 2 | 765 | 1 | 740 | 2.24e-144 | 442 |
| Msa0015580 | AT1G14040.1 | 31.879 | 825 | 496 | 15 | 2 | 772 | 1 | 813 | 4.07e-143 | 441 |
| Msa0015580 | AT4G25350.1 | 32.991 | 779 | 479 | 10 | 2 | 772 | 1 | 744 | 3.33e-139 | 428 |
| Msa0015580 | AT1G69480.2 | 33.208 | 801 | 462 | 16 | 2 | 765 | 1 | 765 | 5.76e-138 | 426 |
| Msa0015580 | AT1G69480.1 | 33.208 | 801 | 462 | 16 | 2 | 765 | 1 | 765 | 5.76e-138 | 426 |
| Msa0015580 | AT2G03260.1 | 31.779 | 815 | 499 | 10 | 2 | 771 | 1 | 803 | 2.42e-136 | 423 |
| Msa0015580 | AT2G03240.1 | 33.094 | 837 | 476 | 18 | 2 | 771 | 1 | 820 | 2.76e-135 | 421 |
| Msa0015580 | AT1G35350.2 | 39.764 | 508 | 300 | 4 | 268 | 771 | 59 | 564 | 1.57e-127 | 392 |
| Msa0015580 | AT2G03260.2 | 39.038 | 520 | 295 | 6 | 267 | 771 | 78 | 590 | 6.30e-124 | 384 |
| Msa0015580 | AT1G26730.2 | 31.755 | 718 | 440 | 14 | 2 | 706 | 1 | 681 | 3.02e-112 | 357 |
| Msa0015580 | AT2G03250.1 | 30.601 | 732 | 446 | 20 | 2 | 707 | 1 | 696 | 4.94e-98 | 320 |
| Msa0015580 | AT2G03250.2 | 29.791 | 621 | 382 | 16 | 2 | 604 | 1 | 585 | 3.31e-73 | 250 |
| Msa0015580 | AT2G32295.1 | 28.302 | 371 | 227 | 16 | 424 | 772 | 98 | 451 | 1.36e-29 | 123 |
| Msa0015580 | AT2G32295.2 | 28.302 | 371 | 227 | 16 | 424 | 772 | 98 | 451 | 1.36e-29 | 123 |
| Msa0015580 | AT5G35730.1 | 26.822 | 343 | 216 | 13 | 424 | 747 | 102 | 428 | 1.29e-27 | 117 |
Find 147 sgRNAs with CRISPR-Local
Find 585 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTGTGCATCTTCTTCTT+AGG | 0.158333 | 1_1:-25146506 | Msa0015580:CDS |
| CTTCATACCTGAATGATATT+TGG | 0.178770 | 1_1:+25154794 | None:intergenic |
| TCTCTTGTTTCCTATAAAAT+TGG | 0.193619 | 1_1:+25152875 | None:intergenic |
| ATGAAATTTACCTTATAAAA+TGG | 0.199099 | 1_1:+25146129 | None:intergenic |
| ATCTCTAAGCCATGCATTTC+TGG | 0.202156 | 1_1:+25145402 | None:intergenic |
| TTGGGAGCTTGTTCTTCTTT+AGG | 0.202238 | 1_1:+25154896 | None:intergenic |
| AGCAAAGTGCTTTGTGAATA+TGG | 0.240631 | 1_1:+25147888 | None:intergenic |
| CTTCCAGAATGACAAGTTTC+AGG | 0.243384 | 1_1:+25145793 | None:intergenic |
| ATGACTTTGTATACAACTTT+TGG | 0.258446 | 1_1:-25144416 | Msa0015580:three_prime_UTR |
| AAACCGAATCGAATCGAAAA+TGG | 0.266596 | 1_1:+25154856 | None:intergenic |
| ACAAATGCATCTTTCCATTC+TGG | 0.268062 | 1_1:+25154971 | None:intergenic |
| TAACACTGAGCCAGCTTATA+TGG | 0.270583 | 1_1:-25147126 | Msa0015580:CDS |
| GAAGATTGTAAATGTCAATT+TGG | 0.284176 | 1_1:-25144320 | Msa0015580:three_prime_UTR |
| AGAATTTCTGTTAGCTTCAT+TGG | 0.286639 | 1_1:-25144841 | Msa0015580:CDS |
| GATCAAAGCTCAAATTATTC+AGG | 0.296286 | 1_1:-25152712 | Msa0015580:intron |
| TTGGCCTTCTCAAAACTTAC+AGG | 0.301447 | 1_1:-25150616 | Msa0015580:intron |
| CATCCCTGGAATTCTTCTTC+TGG | 0.305890 | 1_1:-25146451 | Msa0015580:intron |
| TACATTGTATCAATTGTATT+GGG | 0.320853 | 1_1:-25145461 | Msa0015580:CDS |
| CACCAAATCCTCCCACAAAA+TGG | 0.322606 | 1_1:+25150742 | None:intergenic |
| TATACAAAGTCATAATTTCT+AGG | 0.335003 | 1_1:+25144426 | None:intergenic |
| TTGTAGCCTTCCACATGTAT+AGG | 0.342705 | 1_1:+25146634 | None:intergenic |
| CTCTCAAACATAGAGAAATA+TGG | 0.343344 | 1_1:-25155029 | Msa0015580:exon |
| GATACCATTGCTAAGGCATT+TGG | 0.344575 | 1_1:-25145863 | Msa0015580:CDS |
| TGACTCTGATGTTGCACATT+TGG | 0.345973 | 1_1:-25145596 | Msa0015580:CDS |
| CATCCTGAAACTTGTCATTC+TGG | 0.357319 | 1_1:-25145796 | Msa0015580:CDS |
| TGTAAAGAGGAATATGTTAT+AGG | 0.363657 | 1_1:+25155088 | None:intergenic |
| CATCTTCTTCTTAGGGCTGC+AGG | 0.364468 | 1_1:-25146498 | Msa0015580:CDS |
| GCTAGATGAAGAGCTTAATA+AGG | 0.366604 | 1_1:-25152902 | Msa0015580:CDS |
| CTACATTGTATCAATTGTAT+TGG | 0.370636 | 1_1:-25145462 | Msa0015580:CDS |
| GCCTTTGTTGGTGTGGTGGC+TGG | 0.373706 | 1_1:+25150782 | None:intergenic |
| GGTTGTGCATCTTCTTCTTA+GGG | 0.381083 | 1_1:-25146505 | Msa0015580:CDS |
| AGTCTACACTTGTTCATGTA+TGG | 0.384683 | 1_1:-25146663 | Msa0015580:CDS |
| CTAACCAGAAGAAGAATTCC+AGG | 0.386872 | 1_1:+25146447 | None:intergenic |
| ATATAAGCTGGCTCAGTGTT+AGG | 0.387839 | 1_1:+25147128 | None:intergenic |
| GACTGCTGTGGTTGGGTCAA+TGG | 0.390307 | 1_1:-25146526 | Msa0015580:CDS |
| CATATGGTCACCTTCTTTGT+CGG | 0.390777 | 1_1:-25147808 | Msa0015580:intron |
| TGAGAGAAAGTAGGTGAAGT+AGG | 0.393294 | 1_1:+25155046 | None:intergenic |
| TAACAAACCAAATATCATTC+AGG | 0.396672 | 1_1:-25154801 | Msa0015580:intron |
| ACCCTTTCGTGATGCAGATT+CGG | 0.399651 | 1_1:-25144600 | Msa0015580:CDS |
| GGAGTAGCCAAAGTCTCCTT+TGG | 0.403059 | 1_1:+25154877 | None:intergenic |
| AGCCATGCATTTCTGGAGTT+AGG | 0.404681 | 1_1:+25145409 | None:intergenic |
| TCTAACAACCTTGTTTGAAC+AGG | 0.405992 | 1_1:+25144861 | None:intergenic |
| ATGAAAGGTTGTTAGACTAA+TGG | 0.409132 | 1_1:-25147923 | Msa0015580:intron |
| GTTGAACTCTATAAAGGCCT+TGG | 0.409693 | 1_1:-25150635 | Msa0015580:CDS |
| CTAAGGCATTTGGAGACAAC+TGG | 0.410888 | 1_1:-25145853 | Msa0015580:CDS |
| AATAACTTGCAGAAGCTGTT+TGG | 0.412963 | 1_1:+25148160 | None:intergenic |
| GGCAATGTTGATGCCATCCC+TGG | 0.418502 | 1_1:-25146465 | Msa0015580:CDS |
| GAGCATATACTACATGTCTA+TGG | 0.419044 | 1_1:-25145359 | Msa0015580:intron |
| TGGCAGCTCACTAAATATAG+TGG | 0.425101 | 1_1:-25149016 | Msa0015580:intron |
| GAGAGAAAGTAGGTGAAGTA+GGG | 0.425778 | 1_1:+25155047 | None:intergenic |
| CAAGCTCCCAAAGGAGACTT+TGG | 0.433450 | 1_1:-25154884 | Msa0015580:CDS |
| AGAAAGTAGGTGAAGTAGGG+GGG | 0.438666 | 1_1:+25155050 | None:intergenic |
| TTCTCTACAGGGTTATGTAC+AGG | 0.442470 | 1_1:-25147212 | Msa0015580:intron |
| GAATAATTTGAGCTTTGATC+GGG | 0.445025 | 1_1:+25152715 | None:intergenic |
| ATCTCGGCGTTGGAATTTCT+CGG | 0.447193 | 1_1:+25152751 | None:intergenic |
| AAGCAGTCTACCCTGTCTTC+AGG | 0.450330 | 1_1:-25147103 | Msa0015580:intron |
| TAAAAGATGCGCATTGCAAA+TGG | 0.466249 | 1_1:-25144456 | Msa0015580:three_prime_UTR |
| ACAGCCGTTATAGCCTTTGT+TGG | 0.466698 | 1_1:+25150770 | None:intergenic |
| AAATTCAGAAACATCACAAA+TGG | 0.467434 | 1_1:-25150912 | Msa0015580:CDS |
| CACACCAACAAAGGCTATAA+CGG | 0.472144 | 1_1:-25150774 | Msa0015580:CDS |
| GTGTCTGCAATGGTTGCAGC+CGG | 0.472477 | 1_1:-25145556 | Msa0015580:CDS |
| GTGAATAGTCCTATAAAAGA+AGG | 0.475341 | 1_1:-25150722 | Msa0015580:CDS |
| GAGGGCATTGGAATTTCTAC+AGG | 0.486316 | 1_1:-25144806 | Msa0015580:intron |
| GGCGATAGAATATATCTAAC+GGG | 0.488082 | 1_1:+25146199 | None:intergenic |
| TGAATAATTTGAGCTTTGAT+CGG | 0.488297 | 1_1:+25152714 | None:intergenic |
| CTATGCTTTAATGCTGTGCT+TGG | 0.496091 | 1_1:+25146579 | None:intergenic |
| TATTCATGACTGCTGTGGTT+GGG | 0.496288 | 1_1:-25146533 | Msa0015580:CDS |
| TCTGCATCACGAAAGGGTAA+TGG | 0.496655 | 1_1:+25144605 | None:intergenic |
| GGCTGATCAACTTACTAGCC+AGG | 0.504259 | 1_1:-25145985 | Msa0015580:intron |
| GAGAAGTTGTACCTGAAGAC+AGG | 0.507117 | 1_1:+25147092 | None:intergenic |
| GAGTAGCCAAAGTCTCCTTT+GGG | 0.508035 | 1_1:+25154878 | None:intergenic |
| ACGAGAGAAAATCTCGGCGT+TGG | 0.512373 | 1_1:+25152741 | None:intergenic |
| CTCTATGTTTGAGAGAAAGT+AGG | 0.513312 | 1_1:+25155037 | None:intergenic |
| GTATTCATGACTGCTGTGGT+TGG | 0.517470 | 1_1:-25146534 | Msa0015580:CDS |
| CATTGGAGGTTATTAGAAGA+GGG | 0.518967 | 1_1:-25144824 | Msa0015580:CDS |
| ATTTCTGTTAGCTTCATTGG+AGG | 0.519416 | 1_1:-25144838 | Msa0015580:CDS |
| TGAGAACCTTTCTGCACTTG+AGG | 0.521867 | 1_1:+25147829 | None:intergenic |
| AGTGCAGAAAGGTTCTCATA+TGG | 0.524689 | 1_1:-25147824 | Msa0015580:CDS |
| GAAAGTAGGTGAAGTAGGGG+GGG | 0.526768 | 1_1:+25155051 | None:intergenic |
| TTAAACAACTTCTTACTGAC+CGG | 0.527734 | 1_1:-25152795 | Msa0015580:CDS |
| TGTTGCACATTTGGCTAACA+TGG | 0.528897 | 1_1:-25145587 | Msa0015580:CDS |
| TCATTCTGGAAGATTATACA+TGG | 0.529538 | 1_1:-25145782 | Msa0015580:CDS |
| GAGAAAGTAGGTGAAGTAGG+GGG | 0.530029 | 1_1:+25155049 | None:intergenic |
| TCCGAATCTGCATCACGAAA+GGG | 0.530756 | 1_1:+25144599 | None:intergenic |
| TGTCTGCAATGGTTGCAGCC+GGG | 0.531098 | 1_1:-25145555 | Msa0015580:CDS |
| GATGGAGGATAGTGAAGAAG+AGG | 0.531469 | 1_1:-25152989 | Msa0015580:CDS |
| ATCCGAATCTGCATCACGAA+AGG | 0.533826 | 1_1:+25144598 | None:intergenic |
| AGTCCTATAAAAGAAGGGTA+TGG | 0.535476 | 1_1:-25150716 | Msa0015580:CDS |
| GGGATGGCATCAACATTGCC+CGG | 0.536864 | 1_1:+25146468 | None:intergenic |
| AGAGAGTGAGTTTCTTGAGA+GGG | 0.543146 | 1_1:-25152857 | Msa0015580:CDS |
| TGTTAGACTAATGGATGAAG+TGG | 0.544462 | 1_1:-25147914 | Msa0015580:CDS |
| CGGATGAAGCAGAAACGAGT+TGG | 0.546512 | 1_1:+25146177 | None:intergenic |
| TTAAAACCTCAAGTGCAGAA+AGG | 0.546793 | 1_1:-25147835 | Msa0015580:CDS |
| GGATGAAGCAGAAACGAGTT+GGG | 0.549629 | 1_1:+25146178 | None:intergenic |
| AGGTTATTAGAAGAGGGCAT+TGG | 0.550858 | 1_1:-25144818 | Msa0015580:CDS |
| GCCGGGGCTAGAGTAACATA+TGG | 0.552597 | 1_1:-25145538 | Msa0015580:CDS |
| CTAGGTGAGGAGGAAAATGA+TGG | 0.553948 | 1_1:-25153007 | Msa0015580:intron |
| TAGACTGCTTCCATATAAGC+TGG | 0.554839 | 1_1:+25147116 | None:intergenic |
| AAGCTCAACTAATACCAGAA+TGG | 0.558338 | 1_1:-25154985 | Msa0015580:CDS |
| AGAGAAAGTAGGTGAAGTAG+GGG | 0.560209 | 1_1:+25155048 | None:intergenic |
| CGTTATAGCCTTTGTTGGTG+TGG | 0.564522 | 1_1:+25150775 | None:intergenic |
| GAAGTTATTACCGACAAAGA+AGG | 0.566027 | 1_1:+25147798 | None:intergenic |
| ATTACTACAGGTTCTTCTAG+TGG | 0.568364 | 1_1:-25146018 | Msa0015580:intron |
| GTCTGCAATGGTTGCAGCCG+GGG | 0.570056 | 1_1:-25145554 | Msa0015580:CDS |
| AAGTGGGGCCTGTTCAAACA+AGG | 0.571452 | 1_1:-25144869 | Msa0015580:CDS |
| TGTGATAATCACTTCTGTGA+TGG | 0.578841 | 1_1:-25145485 | Msa0015580:CDS |
| GAGAGTGAGTTTCTTGAGAG+GGG | 0.579909 | 1_1:-25152856 | Msa0015580:CDS |
| GACTGTCATGCACTTCAAAG+TGG | 0.581782 | 1_1:-25144886 | Msa0015580:CDS |
| TCATTGGAGGTTATTAGAAG+AGG | 0.582043 | 1_1:-25144825 | Msa0015580:CDS |
| AACGAGCATCTAAACAATGT+TGG | 0.586936 | 1_1:-25144653 | Msa0015580:CDS |
| ATCCTAACTCCAGAAATGCA+TGG | 0.587354 | 1_1:-25145411 | Msa0015580:CDS |
| TCCAGCCACCACACCAACAA+AGG | 0.591128 | 1_1:-25150783 | Msa0015580:CDS |
| TATAGCCTTTGTTGGTGTGG+TGG | 0.591860 | 1_1:+25150778 | None:intergenic |
| GTCTCCAAATGCCTTAGCAA+TGG | 0.595254 | 1_1:+25145859 | None:intergenic |
| GGGCTAGAGTAACATATGGC+AGG | 0.598969 | 1_1:-25145534 | Msa0015580:CDS |
| GGGCGATAGAATATATCTAA+CGG | 0.599745 | 1_1:+25146198 | None:intergenic |
| ACTGTCATGCACTTCAAAGT+GGG | 0.599916 | 1_1:-25144885 | Msa0015580:CDS |
| CACTGTATTCATGACTGCTG+TGG | 0.600052 | 1_1:-25146538 | Msa0015580:CDS |
| TGAATAGTCCTATAAAAGAA+GGG | 0.602645 | 1_1:-25150721 | Msa0015580:CDS |
| GCCATATGTTACTCTAGCCC+CGG | 0.604469 | 1_1:+25145537 | None:intergenic |
| GTATACAGATACCATTGCTA+AGG | 0.606320 | 1_1:-25145870 | Msa0015580:intron |
| TCGTGTTATGCTAGGTGAGG+AGG | 0.606435 | 1_1:-25153017 | Msa0015580:intron |
| CAGAATGACAAGTTTCAGGA+TGG | 0.607771 | 1_1:+25145797 | None:intergenic |
| GATGCAGATTCGGATAATTG+AGG | 0.609576 | 1_1:-25144590 | Msa0015580:exon |
| GGTGAGGAGGAAAATGATGG+AGG | 0.614036 | 1_1:-25153004 | Msa0015580:CDS |
| GCGGATAGAAGAATGTAAAG+AGG | 0.619017 | 1_1:+25155075 | None:intergenic |
| GAGAGAAAATACCACACAAG+TGG | 0.620395 | 1_1:+25147150 | None:intergenic |
| AAATATGGTGAAATTCTCAA+AGG | 0.620764 | 1_1:-25155014 | Msa0015580:exon |
| AAGAGAGTGAGTTTCTTGAG+AGG | 0.626823 | 1_1:-25152858 | Msa0015580:CDS |
| GGGAGAACGAGAGAAAATCT+CGG | 0.628260 | 1_1:+25152735 | None:intergenic |
| ATTACTAGTGTATAAGACGA+TGG | 0.628674 | 1_1:-25145624 | Msa0015580:intron |
| GCAATCTTGGCCCACTTGTG+TGG | 0.629460 | 1_1:-25147161 | Msa0015580:CDS |
| ACATTTCATTAGTTCAGACA+AGG | 0.639364 | 1_1:-25148118 | Msa0015580:intron |
| ATGCAACCTATACATGTGGA+AGG | 0.640304 | 1_1:-25146640 | Msa0015580:CDS |
| CAGAAGAAGAATTCCAGGGA+TGG | 0.644693 | 1_1:+25146452 | None:intergenic |
| GTTGCACATTTGGCTAACAT+GGG | 0.650024 | 1_1:-25145586 | Msa0015580:CDS |
| TTGCACATTTGGCTAACATG+GGG | 0.654335 | 1_1:-25145585 | Msa0015580:CDS |
| AGAGAAAATACCACACAAGT+GGG | 0.657293 | 1_1:+25147151 | None:intergenic |
| AAAGAAGAACAAGCTCCCAA+AGG | 0.658529 | 1_1:-25154893 | Msa0015580:CDS |
| CTGTCATGCACTTCAAAGTG+GGG | 0.659135 | 1_1:-25144884 | Msa0015580:CDS |
| AGAAGTTGTACCTGAAGACA+GGG | 0.667478 | 1_1:+25147093 | None:intergenic |
| TAACCAGAAGAAGAATTCCA+GGG | 0.669293 | 1_1:+25146448 | None:intergenic |
| ACATTAAAAGCATACCTGGA+GGG | 0.674727 | 1_1:+25145717 | None:intergenic |
| ATGGATGCAACCTATACATG+TGG | 0.686696 | 1_1:-25146644 | Msa0015580:CDS |
| GGGGAAGTATGTGTCTGCAA+TGG | 0.699297 | 1_1:-25145566 | Msa0015580:CDS |
| AGACTATGTTACGAATAACA+CGG | 0.732001 | 1_1:+25146157 | None:intergenic |
| TCGGCGTTGGAATTTCTCGG+CGG | 0.748932 | 1_1:+25152754 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATATATGTTTTTTTTA+AGG | - | chr1_1:25144957-25144976 | Msa0015580:intron | 10.0% |
| !!! | TTCTTAATTTTTTTTTGTTA+GGG | + | chr1_1:25146143-25146162 | None:intergenic | 10.0% |
| !!! | TTTCTTAATTTTTTTTTGTT+AGG | + | chr1_1:25146144-25146163 | None:intergenic | 10.0% |
| !!! | TCATGAATAATAATTTTTTT+GGG | + | chr1_1:25146997-25147016 | None:intergenic | 10.0% |
| !!! | TTCATGAATAATAATTTTTT+TGG | + | chr1_1:25146998-25147017 | None:intergenic | 10.0% |
| !!! | TAGCTAAATATTTTTTATTT+GGG | + | chr1_1:25147050-25147069 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTGTTAACATAT+CGG | - | chr1_1:25147426-25147445 | Msa0015580:intron | 10.0% |
| !! | TATCTTTAAATTTAATATGT+TGG | - | chr1_1:25147678-25147697 | Msa0015580:intron | 10.0% |
| !! | AAAACAAATGATTAATTATT+TGG | + | chr1_1:25147981-25148000 | None:intergenic | 10.0% |
| !!! | TCAAATAAATTTTCTTTTTT+TGG | + | chr1_1:25148897-25148916 | None:intergenic | 10.0% |
| !!! | TTATTTCTTTTTAATTAATG+AGG | - | chr1_1:25148927-25148946 | Msa0015580:intron | 10.0% |
| !! | TTTGTATGATAATATATAAT+TGG | - | chr1_1:25149214-25149233 | Msa0015580:intron | 10.0% |
| !! | TTAAAATTGATAAATGTTAA+CGG | - | chr1_1:25149590-25149609 | Msa0015580:intron | 10.0% |
| !! | TATAATTAAAAAACAAACTT+TGG | - | chr1_1:25149683-25149702 | Msa0015580:intron | 10.0% |
| !! | ATAATTAAAAAACAAACTTT+GGG | - | chr1_1:25149684-25149703 | Msa0015580:intron | 10.0% |
| !!! | ATCTAATTTTTTTATAGTTT+AGG | - | chr1_1:25150526-25150545 | Msa0015580:intron | 10.0% |
| !! | TTACCAAAAAAATAAATTAA+AGG | - | chr1_1:25151198-25151217 | Msa0015580:intron | 10.0% |
| !! | AAAAAAATAAATTAAAGGAA+GGG | - | chr1_1:25151203-25151222 | Msa0015580:intron | 10.0% |
| !!! | TATAATATTTTGATTATGAA+AGG | - | chr1_1:25151334-25151353 | Msa0015580:intron | 10.0% |
| !! | TATAATCAGATAATATAATT+TGG | + | chr1_1:25151708-25151727 | None:intergenic | 10.0% |
| !! | TAAAATTATAAAATCAACTA+AGG | + | chr1_1:25152038-25152057 | None:intergenic | 10.0% |
| !!! | TTTATTTTTTTGTTGAAAAA+TGG | + | chr1_1:25152251-25152270 | None:intergenic | 10.0% |
| !! | CTGAAAATAAAAAAAATTAA+GGG | + | chr1_1:25152498-25152517 | None:intergenic | 10.0% |
| !!! | TATGAAGTTTATTAGTTTTT+GGG | - | chr1_1:25144494-25144513 | Msa0015580:three_prime_UTR | 15.0% |
| !! | AAACAAAAGAAAAATCATAA+TGG | + | chr1_1:25144576-25144595 | None:intergenic | 15.0% |
| !! | TGAAACTTTATACTATTATT+TGG | + | chr1_1:25144755-25144774 | None:intergenic | 15.0% |
| !!! | TTTTTAATCTATACAAATCA+AGG | + | chr1_1:25145063-25145082 | None:intergenic | 15.0% |
| !! | AATTTCTTGATAAAATCTAA+GGG | + | chr1_1:25145169-25145188 | None:intergenic | 15.0% |
| !!! | TTTTATTGAACTATATAGTT+TGG | + | chr1_1:25145502-25145521 | None:intergenic | 15.0% |
| !!! | TTTAACTTTCTTAATCATTT+GGG | + | chr1_1:25145626-25145645 | None:intergenic | 15.0% |
| !!! | ATTTAACTTTCTTAATCATT+TGG | + | chr1_1:25145627-25145646 | None:intergenic | 15.0% |
| !!! | TTTTTCTACTTTTCTTTTTT+GGG | - | chr1_1:25146014-25146033 | Msa0015580:intron | 15.0% |
| !! | TTCATAAAAAAATTACAAAG+AGG | + | chr1_1:25146610-25146629 | None:intergenic | 15.0% |
| !! | AGACATATATATTTACATAA+AGG | + | chr1_1:25146756-25146775 | None:intergenic | 15.0% |
| !!! | CATGAATAATAATTTTTTTG+GGG | + | chr1_1:25146996-25147015 | None:intergenic | 15.0% |
| !!! | AGCTAAATATTTTTTATTTG+GGG | + | chr1_1:25147049-25147068 | None:intergenic | 15.0% |
| !!! | GTAGCTAAATATTTTTTATT+TGG | + | chr1_1:25147051-25147070 | None:intergenic | 15.0% |
| !!! | TTCAACAAATAAATTTGTTT+GGG | + | chr1_1:25147074-25147093 | None:intergenic | 15.0% |
| !!! | TTTCAACAAATAAATTTGTT+TGG | + | chr1_1:25147075-25147094 | None:intergenic | 15.0% |
| !!! | TTGTATTAATTTGACAATTT+CGG | - | chr1_1:25147138-25147157 | Msa0015580:CDS | 15.0% |
| !!! | CCAATAAATTATAACTTTTT+AGG | + | chr1_1:25147643-25147662 | None:intergenic | 15.0% |
| !! | CCTAAAAAGTTATAATTTAT+TGG | - | chr1_1:25147640-25147659 | Msa0015580:intron | 15.0% |
| !! | ATGAAAAAAATAAACACTAA+TGG | + | chr1_1:25147883-25147902 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTTCATAAGTGT+TGG | - | chr1_1:25147889-25147908 | Msa0015580:CDS | 15.0% |
| !! | ATGAAAAAAATAAACACTAA+TGG | + | chr1_1:25147883-25147902 | None:intergenic | 15.0% |
| !! | TTAGTAAAACTATACAAAAT+TGG | - | chr1_1:25148034-25148053 | Msa0015580:intron | 15.0% |
| !!! | TTTTCTAATCTAATTTGATA+AGG | - | chr1_1:25149306-25149325 | Msa0015580:intron | 15.0% |
| !!! | ATCGAATAAATTATTTTCAT+CGG | + | chr1_1:25149967-25149986 | None:intergenic | 15.0% |
| !! | AAATGAAACAAAAAAAATTG+GGG | + | chr1_1:25150406-25150425 | None:intergenic | 15.0% |
| !! | CAAATGAAACAAAAAAAATT+GGG | + | chr1_1:25150407-25150426 | None:intergenic | 15.0% |
| !! | TCAAATGAAACAAAAAAAAT+TGG | + | chr1_1:25150408-25150427 | None:intergenic | 15.0% |
| !! | TAGCTAAATATATAATAATG+GGG | + | chr1_1:25150459-25150478 | None:intergenic | 15.0% |
| !! | GTAGCTAAATATATAATAAT+GGG | + | chr1_1:25150460-25150479 | None:intergenic | 15.0% |
| !!! | CTTCCTTTAATTTATTTTTT+TGG | + | chr1_1:25151204-25151223 | None:intergenic | 15.0% |
| !! | CAAAAAAATAAATTAAAGGA+AGG | - | chr1_1:25151202-25151221 | Msa0015580:intron | 15.0% |
| !!! | TTTAAAATAACCAAATCTTA+TGG | + | chr1_1:25151255-25151274 | None:intergenic | 15.0% |
| !!! | TAATACTTTTTTATACAAGT+AGG | + | chr1_1:25151583-25151602 | None:intergenic | 15.0% |
| !!! | GAAGAATAATATTTTGATTT+GGG | + | chr1_1:25151610-25151629 | None:intergenic | 15.0% |
| !!! | TGAAGAATAATATTTTGATT+TGG | + | chr1_1:25151611-25151630 | None:intergenic | 15.0% |
| !!! | TATAATTTTATTTTCTCTAC+AGG | - | chr1_1:25152048-25152067 | Msa0015580:intron | 15.0% |
| !!! | ATAATTTTATTTTCTCTACA+GGG | - | chr1_1:25152049-25152068 | Msa0015580:intron | 15.0% |
| !!! | AAAATGTCATATCTTATTTT+TGG | + | chr1_1:25152228-25152247 | None:intergenic | 15.0% |
| !! | GCTGAAAATAAAAAAAATTA+AGG | + | chr1_1:25152499-25152518 | None:intergenic | 15.0% |
| !! | ATGAAATTTACCTTATAAAA+TGG | + | chr1_1:25153146-25153165 | None:intergenic | 15.0% |
| !!! | ATATAAAATAAGATTTTACC+TGG | + | chr1_1:25153308-25153327 | None:intergenic | 15.0% |
| !! | TTGAAATTATTGTTAGAATT+TGG | - | chr1_1:25153968-25153987 | Msa0015580:intron | 15.0% |
| !!! | AATATTTTATTTAGGCTAAT+CGG | + | chr1_1:25154241-25154260 | None:intergenic | 15.0% |
| !!! | ATTAGCCTAAATAAAATATT+AGG | - | chr1_1:25154241-25154260 | Msa0015580:intron | 15.0% |
| !! | TTAGCCTAAATAAAATATTA+GGG | - | chr1_1:25154242-25154261 | Msa0015580:intron | 15.0% |
| !! | TCACTTTAATTAATCAAAAA+TGG | - | chr1_1:25154314-25154333 | Msa0015580:intron | 15.0% |
| !! | TTCTTAAAACTGAAAAAAAA+AGG | + | chr1_1:25154527-25154546 | None:intergenic | 15.0% |
| !!! | TTTTTAAAATCATTTCAACA+AGG | + | chr1_1:25154907-25154926 | None:intergenic | 15.0% |
| !! | AAACATATGCAATATTTATT+TGG | - | chr1_1:25155030-25155049 | Msa0015580:exon | 15.0% |
| !!! | GTATGAAGTTTATTAGTTTT+TGG | - | chr1_1:25144493-25144512 | Msa0015580:three_prime_UTR | 20.0% |
| !!! | TTTTTGTTTTTGTTGCAATA+AGG | + | chr1_1:25144642-25144661 | None:intergenic | 20.0% |
| !!! | CTTCAATCTTTTATATGATA+TGG | - | chr1_1:25144720-25144739 | Msa0015580:intron | 20.0% |
| !! | GTAACATATATTTCTTACAA+AGG | - | chr1_1:25144909-25144928 | Msa0015580:CDS | 20.0% |
| !! | CAATTTCTTGATAAAATCTA+AGG | + | chr1_1:25145170-25145189 | None:intergenic | 20.0% |
| !! | AATAGTGTAACATAAGTAAT+AGG | + | chr1_1:25145651-25145670 | None:intergenic | 20.0% |
| !!! | TTTTTCATTGGTAGAAAAAA+AGG | + | chr1_1:25145686-25145705 | None:intergenic | 20.0% |
| !!! | TCTTATATTTTATTCACTAG+AGG | + | chr1_1:25145724-25145743 | None:intergenic | 20.0% |
| !!! | AACTACTTTTTAACAACTTT+TGG | - | chr1_1:25145760-25145779 | Msa0015580:CDS | 20.0% |
| !! | ACTCAAAACATAATTCAAAA+AGG | - | chr1_1:25145922-25145941 | Msa0015580:intron | 20.0% |
| !! | AAAAAGAAAAGTAGAAAAAG+AGG | + | chr1_1:25146013-25146032 | None:intergenic | 20.0% |
| !!! | CTTTTTCTACTTTTCTTTTT+TGG | - | chr1_1:25146013-25146032 | Msa0015580:intron | 20.0% |
| !!! | TGATTGAATTTTATTGTCTA+TGG | + | chr1_1:25146200-25146219 | None:intergenic | 20.0% |
| !!! | AAAATTTTGATTTGCTTCAT+TGG | + | chr1_1:25146808-25146827 | None:intergenic | 20.0% |
| !! | ATTATTATTCATGAATGAGT+CGG | - | chr1_1:25147003-25147022 | Msa0015580:intron | 20.0% |
| !!! | TCAACAAATAAATTTGTTTG+GGG | + | chr1_1:25147073-25147092 | None:intergenic | 20.0% |
| !! | AATAACTTATTTGTTTACGT+TGG | - | chr1_1:25147249-25147268 | Msa0015580:intron | 20.0% |
| !!! | TTAACATATCGGTTAAATTT+AGG | - | chr1_1:25147437-25147456 | Msa0015580:intron | 20.0% |
| !!! | ATTTTTAAGTTAAGTACCTA+AGG | - | chr1_1:25147494-25147513 | Msa0015580:intron | 20.0% |
| !! | CTAAAATTAAACAAAACCTT+AGG | + | chr1_1:25147513-25147532 | None:intergenic | 20.0% |
| !!! | GCAAATTTTTACCATAAAAA+AGG | + | chr1_1:25147582-25147601 | None:intergenic | 20.0% |
| !!! | AAAACAAATGATTAGTTAGT+TGG | + | chr1_1:25147857-25147876 | None:intergenic | 20.0% |
| !!! | TTTTGCATGTTAATCATATA+TGG | + | chr1_1:25148285-25148304 | None:intergenic | 20.0% |
| !! | GTAATAAGAAAAATCCATAA+CGG | + | chr1_1:25148313-25148332 | None:intergenic | 20.0% |
| !! | ATATCAACTTTAGCAAAAAA+TGG | - | chr1_1:25148391-25148410 | Msa0015580:intron | 20.0% |
| !! | AAAAAAAGGAAAACCTAAAA+TGG | - | chr1_1:25148450-25148469 | Msa0015580:intron | 20.0% |
| !! | GTGATAGAGATAAAAATATA+CGG | + | chr1_1:25148777-25148796 | None:intergenic | 20.0% |
| !!! | TCAAGACATTTCTATTTTTA+GGG | - | chr1_1:25149034-25149053 | Msa0015580:intron | 20.0% |
| !! | AATATATAATTGGATGACTA+TGG | - | chr1_1:25149224-25149243 | Msa0015580:intron | 20.0% |
| !! | ATATATAATTGGATGACTAT+GGG | - | chr1_1:25149225-25149244 | Msa0015580:intron | 20.0% |
| !! | TTGATAAGGTAGAATAAAAA+TGG | - | chr1_1:25149320-25149339 | Msa0015580:intron | 20.0% |
| !! | TTTATGAGTAGAACAAATAT+TGG | + | chr1_1:25149498-25149517 | None:intergenic | 20.0% |
| !! | TAATTTCCAAAAATAAGAAG+AGG | - | chr1_1:25149710-25149729 | Msa0015580:intron | 20.0% |
| !! | GAATAACACATAATATATGT+AGG | - | chr1_1:25149803-25149822 | Msa0015580:intron | 20.0% |
| !!! | AAAAGTACTTATGGTAATTT+GGG | + | chr1_1:25150196-25150215 | None:intergenic | 20.0% |
| !!! | AAAAAGTACTTATGGTAATT+TGG | + | chr1_1:25150197-25150216 | None:intergenic | 20.0% |
| !!! | CTTATGAAAAAAAGTACTTA+TGG | + | chr1_1:25150205-25150224 | None:intergenic | 20.0% |
| !!! | TAACAACATTCTATTGTTTT+TGG | - | chr1_1:25150236-25150255 | Msa0015580:intron | 20.0% |
| !! | GGTAGCTAAATATATAATAA+TGG | + | chr1_1:25150461-25150480 | None:intergenic | 20.0% |
| !! | ATGACAATTAAACTTATTTG+AGG | + | chr1_1:25150482-25150501 | None:intergenic | 20.0% |
| !! | TTATTCATGCAAACTATATT+GGG | + | chr1_1:25150850-25150869 | None:intergenic | 20.0% |
| !! | TTTATTCATGCAAACTATAT+TGG | + | chr1_1:25150851-25150870 | None:intergenic | 20.0% |
| !! | AAGTTTACTTTACTTTCATT+TGG | + | chr1_1:25150876-25150895 | None:intergenic | 20.0% |
| !! | TCAAAATATTATTCTTCATC+AGG | - | chr1_1:25151613-25151632 | Msa0015580:intron | 20.0% |
| !!! | GGTTTTTAAATAAAAGAGTT+AGG | + | chr1_1:25152399-25152418 | None:intergenic | 20.0% |
| !! | TCAAATTGAAAAGTTATGAT+TGG | - | chr1_1:25152434-25152453 | Msa0015580:intron | 20.0% |
| !!! | TGTTAGTTAGTACATTTTAA+TGG | + | chr1_1:25152550-25152569 | None:intergenic | 20.0% |
| !! | AAATAGAACGAAACTAAAAA+TGG | - | chr1_1:25152854-25152873 | Msa0015580:CDS | 20.0% |
| !! | TGAAAAACTGCAAAAATAAA+CGG | + | chr1_1:25153037-25153056 | None:intergenic | 20.0% |
| !! | TGATTTAATATCATTACTAC+AGG | - | chr1_1:25153242-25153261 | Msa0015580:intron | 20.0% |
| !!! | TCAACATTTTTACTATTTCA+TGG | - | chr1_1:25153380-25153399 | Msa0015580:intron | 20.0% |
| !! | TACATTGTATCAATTGTATT+GGG | - | chr1_1:25153811-25153830 | Msa0015580:intron | 20.0% |
| !!! | ATATTTTATTTAGGCTAATC+GGG | + | chr1_1:25154240-25154259 | None:intergenic | 20.0% |
| !!! | ACAACCCTAATATTTTATTT+AGG | + | chr1_1:25154249-25154268 | None:intergenic | 20.0% |
| !! | AATTAATCAAAAATGGACAT+TGG | - | chr1_1:25154321-25154340 | Msa0015580:intron | 20.0% |
| !! | TATACAAAGTCATAATTTCT+AGG | + | chr1_1:25154849-25154868 | None:intergenic | 20.0% |
| ! | TGTAAAGAGGAATATGTTAT+AGG | + | chr1_1:25144187-25144206 | None:intergenic | 25.0% |
| ! | AAATATGGTGAAATTCTCAA+AGG | - | chr1_1:25144258-25144277 | Msa0015580:intron | 25.0% |
| ! | TAACAAACCAAATATCATTC+AGG | - | chr1_1:25144471-25144490 | Msa0015580:three_prime_UTR | 25.0% |
| ! | TCAAGACAATGAAATGAAAA+TGG | - | chr1_1:25144683-25144702 | Msa0015580:intron | 25.0% |
| !! | AAAAGATTGAAGAAAAGTGT+TGG | + | chr1_1:25144712-25144731 | None:intergenic | 25.0% |
| !! | TATTGGCTAACATTAATTTC+AGG | + | chr1_1:25145194-25145213 | None:intergenic | 25.0% |
| ! | AGAAAAATTCAAGAATGACA+TGG | + | chr1_1:25145298-25145317 | None:intergenic | 25.0% |
| !! | CTGATTGTGTTATTGTAAAT+AGG | + | chr1_1:25145352-25145371 | None:intergenic | 25.0% |
| ! | TTTACAATAACACAATCAGA+TGG | - | chr1_1:25145353-25145372 | Msa0015580:intron | 25.0% |
| !! | CAAATGATATTTAGAATGTG+AGG | - | chr1_1:25145456-25145475 | Msa0015580:CDS | 25.0% |
| ! | ACTTGAACGATTAATCTTTA+TGG | + | chr1_1:25145545-25145564 | None:intergenic | 25.0% |
| !!! | ATGAATGAGTGTTTTTTCAT+TGG | + | chr1_1:25145698-25145717 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr1_1:25145845-25145864 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr1_1:25145858-25145877 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | - | chr1_1:25145857-25145876 | Msa0015580:CDS | 25.0% |
| ! | AAACATAATTCAAAAAGGAG+TGG | - | chr1_1:25145927-25145946 | Msa0015580:intron | 25.0% |
| !! | TACCATTAAAGTTAGTTTAG+TGG | - | chr1_1:25145972-25145991 | Msa0015580:intron | 25.0% |
| !!! | AGAAAAAGAGGTTTTAGAAA+AGG | + | chr1_1:25146001-25146020 | None:intergenic | 25.0% |
| !! | ATAAGGTGAACCAATTTTAT+AGG | - | chr1_1:25146387-25146406 | Msa0015580:intron | 25.0% |
| !! | TCTCTTGTTTCCTATAAAAT+TGG | + | chr1_1:25146400-25146419 | None:intergenic | 25.0% |
| !! | TGAATAATTTGAGCTTTGAT+CGG | + | chr1_1:25146561-25146580 | None:intergenic | 25.0% |
| ! | ATTTCGATAACAACAACTTA+AGG | + | chr1_1:25147537-25147556 | None:intergenic | 25.0% |
| !!! | CTAAAAACACTCCTTTTTTA+TGG | - | chr1_1:25147568-25147587 | Msa0015580:intron | 25.0% |
| ! | GGTAAAACTATACAAATTTG+TGG | - | chr1_1:25147910-25147929 | Msa0015580:CDS | 25.0% |
| ! | ACTATACAAAATTGGATCTT+TGG | - | chr1_1:25148042-25148061 | Msa0015580:intron | 25.0% |
| !! | GTATGGAAATTGTATTTCTA+AGG | - | chr1_1:25148137-25148156 | Msa0015580:CDS | 25.0% |
| !! | AAAATTTTGTTCACGTGATA+TGG | - | chr1_1:25148244-25148263 | Msa0015580:intron | 25.0% |
| ! | AAATTCAGAAACATCACAAA+TGG | - | chr1_1:25148360-25148379 | Msa0015580:intron | 25.0% |
| !! | ATTTTGTTAATTCAGCAACA+AGG | - | chr1_1:25148419-25148438 | Msa0015580:intron | 25.0% |
| !! | TTTTGTTAATTCAGCAACAA+GGG | - | chr1_1:25148420-25148439 | Msa0015580:intron | 25.0% |
| ! | TGAATAGTCCTATAAAAGAA+GGG | - | chr1_1:25148551-25148570 | Msa0015580:intron | 25.0% |
| !!! | GTCAAGACATTTCTATTTTT+AGG | - | chr1_1:25149033-25149052 | Msa0015580:intron | 25.0% |
| ! | CATGATTGGATCAATTAAAT+TGG | + | chr1_1:25149081-25149100 | None:intergenic | 25.0% |
| ! | TTTCATCCATAATATTGAAG+TGG | + | chr1_1:25149376-25149395 | None:intergenic | 25.0% |
| !!! | TTTTCTCCTCTTCTTATTTT+TGG | + | chr1_1:25149719-25149738 | None:intergenic | 25.0% |
| ! | ATTGAGGTGTATAAGTAAAA+AGG | - | chr1_1:25149743-25149762 | Msa0015580:intron | 25.0% |
| ! | GAAATAAATGTGAAAAAGTG+AGG | + | chr1_1:25149852-25149871 | None:intergenic | 25.0% |
| ! | TTTAGATATTGAACAATCTG+AGG | + | chr1_1:25149921-25149940 | None:intergenic | 25.0% |
| ! | AAGGAATTACAAATACGTAA+AGG | + | chr1_1:25150171-25150190 | None:intergenic | 25.0% |
| !! | TTTTAGTGTACCATAAGATT+TGG | - | chr1_1:25151242-25151261 | Msa0015580:intron | 25.0% |
| !!! | TTATGTGGTTTTGCAATAAT+TGG | - | chr1_1:25151298-25151317 | Msa0015580:intron | 25.0% |
| ! | TAGACATAGATTTGATATAG+TGG | + | chr1_1:25151499-25151518 | None:intergenic | 25.0% |
| ! | CTATGTCTATATTAGTGAAT+TGG | - | chr1_1:25151510-25151529 | Msa0015580:intron | 25.0% |
| ! | ATAATAGGAAAATACTTGTG+TGG | + | chr1_1:25152002-25152021 | None:intergenic | 25.0% |
| ! | GGTTTAATGTATGGAATAAT+AGG | + | chr1_1:25152017-25152036 | None:intergenic | 25.0% |
| ! | ATCAACTAAGGTTTAATGTA+TGG | + | chr1_1:25152026-25152045 | None:intergenic | 25.0% |
| !! | ATTTGAAACATCATGTTTGA+CGG | + | chr1_1:25152420-25152439 | None:intergenic | 25.0% |
| ! | GTTTGACATTATAATCTCAA+AGG | + | chr1_1:25152948-25152967 | None:intergenic | 25.0% |
| !! | TAATGTCAAACTTTTATCAC+TGG | - | chr1_1:25152957-25152976 | Msa0015580:CDS | 25.0% |
| !!! | CATACATTTTTTGAAGCAAT+TGG | - | chr1_1:25153163-25153182 | Msa0015580:intron | 25.0% |
| !!! | TCTCATTTTTGCCATATTTT+TGG | - | chr1_1:25153528-25153547 | Msa0015580:intron | 25.0% |
| ! | CTACATTGTATCAATTGTAT+TGG | - | chr1_1:25153810-25153829 | Msa0015580:intron | 25.0% |
| !!! | AGTATATGCTCTTATTTTTC+AGG | + | chr1_1:25153904-25153923 | None:intergenic | 25.0% |
| ! | TCAATACTTAGATTAGAAAG+AGG | + | chr1_1:25153952-25153971 | None:intergenic | 25.0% |
| !! | TTATTGTTAGAATTTGGCTT+CGG | - | chr1_1:25153974-25153993 | Msa0015580:intron | 25.0% |
| !!! | ATTCTAAAATACGTTCAATC+GGG | + | chr1_1:25154012-25154031 | None:intergenic | 25.0% |
| !!! | CATTCTAAAATACGTTCAAT+CGG | + | chr1_1:25154013-25154032 | None:intergenic | 25.0% |
| !!! | GATTGAACGTATTTTAGAAT+GGG | - | chr1_1:25154012-25154031 | Msa0015580:intron | 25.0% |
| !!! | CAAATGTTTTGACAAATGTT+GGG | + | chr1_1:25154072-25154091 | None:intergenic | 25.0% |
| !!! | TCAAATGTTTTGACAAATGT+TGG | + | chr1_1:25154073-25154092 | None:intergenic | 25.0% |
| !!! | TTGTTTTTGCGTGATTTTTT+AGG | + | chr1_1:25154197-25154216 | None:intergenic | 25.0% |
| !! | CAAAAACAACTGTATCTTTT+TGG | - | chr1_1:25154208-25154227 | Msa0015580:intron | 25.0% |
| ! | ATAAAATATTAGGGTTGTGT+CGG | - | chr1_1:25154251-25154270 | Msa0015580:intron | 25.0% |
| !!! | TTTTTTCTCAACATGTCTAT+AGG | + | chr1_1:25154735-25154754 | None:intergenic | 25.0% |
| !! | ATGACTTTGTATACAACTTT+TGG | - | chr1_1:25154856-25154875 | Msa0015580:CDS | 25.0% |
| ! | GAAGATTGTAAATGTCAATT+TGG | - | chr1_1:25154952-25154971 | Msa0015580:CDS | 25.0% |
| CTCTCAAACATAGAGAAATA+TGG | - | chr1_1:25144243-25144262 | Msa0015580:intron | 30.0% | |
| CTTCATACCTGAATGATATT+TGG | + | chr1_1:25144481-25144500 | None:intergenic | 30.0% | |
| ! | TTGTTGTTCTGTAACATGTT+AGG | - | chr1_1:25144527-25144546 | Msa0015580:three_prime_UTR | 30.0% |
| TGTTGTTCTGTAACATGTTA+GGG | - | chr1_1:25144528-25144547 | Msa0015580:three_prime_UTR | 30.0% | |
| TAATGAAGCCATGAATGAAA+GGG | + | chr1_1:25144861-25144880 | None:intergenic | 30.0% | |
| TGTTAGCAACAATATACATC+CGG | - | chr1_1:25144995-25145014 | Msa0015580:intron | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | - | chr1_1:25145132-25145151 | Msa0015580:intron | 30.0% | |
| CAATAAAATCTCAACTTGAC+CGG | - | chr1_1:25145209-25145228 | Msa0015580:intron | 30.0% | |
| ATCAGATGGTACAAAATTCA+CGG | - | chr1_1:25145367-25145386 | Msa0015580:CDS | 30.0% | |
| ! | GAAATGACATTTAGAATGTG+AGG | - | chr1_1:25145391-25145410 | Msa0015580:CDS | 30.0% |
| TTTCTTAATCATTTGGGTCA+AGG | + | chr1_1:25145620-25145639 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr1_1:25145832-25145851 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr1_1:25145883-25145902 | Msa0015580:intron | 30.0% | |
| !!! | AAAAGAGGTTTTAGAAAAGG+AGG | + | chr1_1:25145998-25146017 | None:intergenic | 30.0% |
| TAATTATGTCGTGTTATGCT+AGG | - | chr1_1:25146247-25146266 | Msa0015580:intron | 30.0% | |
| TTAAACAACTTCTTACTGAC+CGG | - | chr1_1:25146477-25146496 | Msa0015580:CDS | 30.0% | |
| ! | GAATAATTTGAGCTTTGATC+GGG | + | chr1_1:25146560-25146579 | None:intergenic | 30.0% |
| GATCAAAGCTCAAATTATTC+AGG | - | chr1_1:25146560-25146579 | Msa0015580:CDS | 30.0% | |
| !!! | ATTTTGATTTGCTTCATTGG+AGG | + | chr1_1:25146805-25146824 | None:intergenic | 30.0% |
| ACGCAGTTAGACATTAAATA+TGG | + | chr1_1:25146851-25146870 | None:intergenic | 30.0% | |
| TCCTTTGTCCAAGTTTAAAT+CGG | - | chr1_1:25146917-25146936 | Msa0015580:intron | 30.0% | |
| ACACGCTATTTAGAAAAGTT+GGG | + | chr1_1:25147345-25147364 | None:intergenic | 30.0% | |
| ! | AGCTAGCAAATATTTTACGA+GGG | + | chr1_1:25147741-25147760 | None:intergenic | 30.0% |
| ! | AAGCTAGCAAATATTTTACG+AGG | + | chr1_1:25147742-25147761 | None:intergenic | 30.0% |
| TGTTAAATGAGTTTAAGCAG+CGG | + | chr1_1:25147767-25147786 | None:intergenic | 30.0% | |
| ATGTATGTATGTGTGTGTAA+AGG | - | chr1_1:25147946-25147965 | Msa0015580:intron | 30.0% | |
| CATGCGCACAATAAATATTT+GGG | - | chr1_1:25148065-25148084 | Msa0015580:intron | 30.0% | |
| ATGCGCACAATAAATATTTG+GGG | - | chr1_1:25148066-25148085 | Msa0015580:intron | 30.0% | |
| CATGCAAAATAAAACCGTTA+TGG | - | chr1_1:25148296-25148315 | Msa0015580:intron | 30.0% | |
| ACAAGGGTAAAGACAAAAAA+AGG | - | chr1_1:25148436-25148455 | Msa0015580:intron | 30.0% | |
| !!! | TCAATTCTCATTGCCATTTT+AGG | + | chr1_1:25148466-25148485 | None:intergenic | 30.0% |
| GTGAATAGTCCTATAAAAGA+AGG | - | chr1_1:25148550-25148569 | Msa0015580:intron | 30.0% | |
| ! | GCTTTTGTTGAACTCTATAA+AGG | - | chr1_1:25148631-25148650 | Msa0015580:intron | 30.0% |
| TTAATGAGGCTAATCATATG+TGG | - | chr1_1:25148941-25148960 | Msa0015580:intron | 30.0% | |
| CACGTAAAATGTTGGATAAT+TGG | - | chr1_1:25148977-25148996 | Msa0015580:intron | 30.0% | |
| ! | TTTTGTGACATACTCATGAT+TGG | + | chr1_1:25149095-25149114 | None:intergenic | 30.0% |
| AAATGAGAAATACCCTGATT+TGG | + | chr1_1:25149135-25149154 | None:intergenic | 30.0% | |
| ! | AAATCAGGGTATTTCTCATT+TGG | - | chr1_1:25149134-25149153 | Msa0015580:intron | 30.0% |
| CCATAATATTGAAGTGGTTT+CGG | + | chr1_1:25149370-25149389 | None:intergenic | 30.0% | |
| !! | AAAAATTGGTGTTAATCCTC+TGG | - | chr1_1:25149417-25149436 | Msa0015580:intron | 30.0% |
| CTTAACAATTTGTCAGTTGT+TGG | - | chr1_1:25149534-25149553 | Msa0015580:intron | 30.0% | |
| ACCATTTCAACACAATTGTT+TGG | - | chr1_1:25149566-25149585 | Msa0015580:intron | 30.0% | |
| ACCAAACAATTGTGTTGAAA+TGG | + | chr1_1:25149570-25149589 | None:intergenic | 30.0% | |
| AAGAGGAGAAAATAGTATTG+AGG | - | chr1_1:25149727-25149746 | Msa0015580:intron | 30.0% | |
| CATAATATATGTAGGAGTCA+TGG | - | chr1_1:25149811-25149830 | Msa0015580:intron | 30.0% | |
| ACTTATGGTAATTTGGGTAA+AGG | + | chr1_1:25150190-25150209 | None:intergenic | 30.0% | |
| ! | ATACCTTGTCAAACTTTTTG+AGG | + | chr1_1:25150295-25150314 | None:intergenic | 30.0% |
| TCAAAAAGTTTGACAAGGTA+TGG | - | chr1_1:25150294-25150313 | Msa0015580:intron | 30.0% | |
| ! | TATAATAATGGGGTAGCTAA+AGG | + | chr1_1:25150449-25150468 | None:intergenic | 30.0% |
| CTCTCTTTATAGTTGCTAAA+AGG | + | chr1_1:25150553-25150572 | None:intergenic | 30.0% | |
| ATTTGTACATATGTATGCAG+CGG | + | chr1_1:25150722-25150741 | None:intergenic | 30.0% | |
| TTTAACCCTATTGATCAATC+AGG | - | chr1_1:25151082-25151101 | Msa0015580:intron | 30.0% | |
| ACATTTCATTAGTTCAGACA+AGG | - | chr1_1:25151154-25151173 | Msa0015580:intron | 30.0% | |
| ! | GAGAGTGTATAATGATTATG+TGG | - | chr1_1:25151283-25151302 | Msa0015580:intron | 30.0% |
| ATGAAAGGTTGTTAGACTAA+TGG | - | chr1_1:25151349-25151368 | Msa0015580:intron | 30.0% | |
| TGCTAGCAATGATAGAAAAA+AGG | - | chr1_1:25151403-25151422 | Msa0015580:intron | 30.0% | |
| ! | TAATTTAGAGTTCGGTTGTT+AGG | + | chr1_1:25151648-25151667 | None:intergenic | 30.0% |
| AACCGAACTCTAAATTATCA+GGG | - | chr1_1:25151651-25151670 | Msa0015580:intron | 30.0% | |
| ACTATGTTTATCACACTTAG+TGG | + | chr1_1:25151809-25151828 | None:intergenic | 30.0% | |
| ! | GTTTTGTGTATATGCAATCT+TGG | - | chr1_1:25152098-25152117 | Msa0015580:intron | 30.0% |
| ! | TTTTGGTCATATGAAGAACT+AGG | + | chr1_1:25152211-25152230 | None:intergenic | 30.0% |
| CATAATAGTCCATGAAATGT+CGG | + | chr1_1:25152984-25153003 | None:intergenic | 30.0% | |
| AGACTATGTTACGAATAACA+CGG | + | chr1_1:25153118-25153137 | None:intergenic | 30.0% | |
| !!! | TCTTCTAGTGGACTTTTTTA+TGG | - | chr1_1:25153266-25153285 | Msa0015580:intron | 30.0% |
| ! | TCATTCTGGAAGATTATACA+TGG | - | chr1_1:25153490-25153509 | Msa0015580:intron | 30.0% |
| ! | TTCAACATTAAAAGCATACC+TGG | + | chr1_1:25153562-25153581 | None:intergenic | 30.0% |
| ATTACTAGTGTATAAGACGA+TGG | - | chr1_1:25153648-25153667 | Msa0015580:intron | 30.0% | |
| ! | ATTGTATTGGGATTTTGTCA+AGG | - | chr1_1:25153823-25153842 | Msa0015580:intron | 30.0% |
| !! | CGATTGAACGTATTTTAGAA+TGG | - | chr1_1:25154011-25154030 | Msa0015580:intron | 30.0% |
| !! | GTCAAAACATTTGATTTGTC+TGG | - | chr1_1:25154079-25154098 | Msa0015580:intron | 30.0% |
| !! | CTAAAACATTTGATTTTGCC+CGG | + | chr1_1:25154148-25154167 | None:intergenic | 30.0% |
| !!! | ATGTTGTTTTAAGAGTGACT+TGG | - | chr1_1:25154358-25154377 | Msa0015580:intron | 30.0% |
| ! | AGAATTTCTGTTAGCTTCAT+TGG | - | chr1_1:25154431-25154450 | Msa0015580:intron | 30.0% |
| ! | TTAGCTGTTCTAAGTTGTTT+AGG | + | chr1_1:25154498-25154517 | None:intergenic | 30.0% |
| !! | AACTTAACTTGTTTGTGAAC+AGG | - | chr1_1:25154590-25154609 | Msa0015580:intron | 30.0% |
| ! | TTGTATACAACTTTTGGTCT+TGG | - | chr1_1:25154862-25154881 | Msa0015580:CDS | 30.0% |
| CTCTATGTTTGAGAGAAAGT+AGG | + | chr1_1:25144238-25144257 | None:intergenic | 35.0% | |
| AAGCTCAACTAATACCAGAA+TGG | - | chr1_1:25144287-25144306 | Msa0015580:intron | 35.0% | |
| ACAAATGCATCTTTCCATTC+TGG | + | chr1_1:25144304-25144323 | None:intergenic | 35.0% | |
| !! | ACTCCATTTTCGATTCGATT+CGG | - | chr1_1:25144413-25144432 | Msa0015580:three_prime_UTR | 35.0% |
| AAACCGAATCGAATCGAAAA+TGG | + | chr1_1:25144419-25144438 | None:intergenic | 35.0% | |
| CTAATGAAGCCATGAATGAA+AGG | + | chr1_1:25144862-25144881 | None:intergenic | 35.0% | |
| !!! | CGGTCAAGTTGAGATTTTAT+TGG | + | chr1_1:25145211-25145230 | None:intergenic | 35.0% |
| GGCCACTAAACTAACTTTAA+TGG | + | chr1_1:25145977-25145996 | None:intergenic | 35.0% | |
| AAAGCTAGTGAAAACGAGTT+TGG | - | chr1_1:25146056-25146075 | Msa0015580:intron | 35.0% | |
| AAACGAGTTTGGCATTATTG+AGG | - | chr1_1:25146067-25146086 | Msa0015580:intron | 35.0% | |
| AACGAGTTTGGCATTATTGA+GGG | - | chr1_1:25146068-25146087 | Msa0015580:intron | 35.0% | |
| TAGTTTCGTGTGATATGGTA+TGG | + | chr1_1:25146113-25146132 | None:intergenic | 35.0% | |
| CACAATAGTTTCGTGTGATA+TGG | + | chr1_1:25146118-25146137 | None:intergenic | 35.0% | |
| ! | TGCACAATTGTTTTCAGAAG+AGG | - | chr1_1:25146322-25146341 | Msa0015580:intron | 35.0% |
| !!! | AAGTGCATGTGTTTTTTGCA+AGG | - | chr1_1:25146348-25146367 | Msa0015580:intron | 35.0% |
| GCTAGATGAAGAGCTTAATA+AGG | - | chr1_1:25146370-25146389 | Msa0015580:intron | 35.0% | |
| TCCGATTTAAACTTGGACAA+AGG | + | chr1_1:25146921-25146940 | None:intergenic | 35.0% | |
| TAAGGACTCCGATTTAAACT+TGG | + | chr1_1:25146928-25146947 | None:intergenic | 35.0% | |
| !!! | TAATTTTTTTGGGGTAGCCT+TGG | + | chr1_1:25146987-25147006 | None:intergenic | 35.0% |
| GACACGCTATTTAGAAAAGT+TGG | + | chr1_1:25147346-25147365 | None:intergenic | 35.0% | |
| ! | CTAGCAAATATTTTACGAGG+GGG | + | chr1_1:25147739-25147758 | None:intergenic | 35.0% |
| ! | GCTAGCAAATATTTTACGAG+GGG | + | chr1_1:25147740-25147759 | None:intergenic | 35.0% |
| GCATGCGCACAATAAATATT+TGG | - | chr1_1:25148064-25148083 | Msa0015580:intron | 35.0% | |
| ATACGTCGCACTAAATCAAA+AGG | + | chr1_1:25148121-25148140 | None:intergenic | 35.0% | |
| !!! | TTTTGATTTAGTGCGACGTA+TGG | - | chr1_1:25148120-25148139 | Msa0015580:CDS | 35.0% |
| AGTCCTATAAAAGAAGGGTA+TGG | - | chr1_1:25148556-25148575 | Msa0015580:intron | 35.0% | |
| ! | TCTCCATACCCTTCTTTTAT+AGG | + | chr1_1:25148562-25148581 | None:intergenic | 35.0% |
| !!! | ATGACCTGTAAGTTTTGAGA+AGG | + | chr1_1:25148663-25148682 | None:intergenic | 35.0% |
| ! | ATGTTGGATAATTGGTGACT+TGG | - | chr1_1:25148985-25149004 | Msa0015580:CDS | 35.0% |
| GATATTAGCTGGGTATTAGT+GGG | - | chr1_1:25149011-25149030 | Msa0015580:CDS | 35.0% | |
| AGTGTGAATGAATCCAAATC+AGG | - | chr1_1:25149119-25149138 | Msa0015580:intron | 35.0% | |
| GTGTGAATGAATCCAAATCA+GGG | - | chr1_1:25149120-25149139 | Msa0015580:intron | 35.0% | |
| CCGAAACCACTTCAATATTA+TGG | - | chr1_1:25149367-25149386 | Msa0015580:intron | 35.0% | |
| ! | TTTTACTCCTAACCGAACAT+CGG | + | chr1_1:25149470-25149489 | None:intergenic | 35.0% |
| ! | CTATAAAGTAGTTTGGTGGT+TGG | + | chr1_1:25149895-25149914 | None:intergenic | 35.0% |
| GAGTCTATAAAGTAGTTTGG+TGG | + | chr1_1:25149899-25149918 | None:intergenic | 35.0% | |
| GAGGAGTCTATAAAGTAGTT+TGG | + | chr1_1:25149902-25149921 | None:intergenic | 35.0% | |
| !! | TGAGCTTTTTAGCAATGTGA+TGG | - | chr1_1:25150013-25150032 | Msa0015580:intron | 35.0% |
| AGAATGCTGCATTATGGTAT+GGG | + | chr1_1:25150040-25150059 | None:intergenic | 35.0% | |
| TAGAATGCTGCATTATGGTA+TGG | + | chr1_1:25150041-25150060 | None:intergenic | 35.0% | |
| CTTGTTAGAATGCTGCATTA+TGG | + | chr1_1:25150046-25150065 | None:intergenic | 35.0% | |
| GATCCTCAAAAAGTTTGACA+AGG | - | chr1_1:25150289-25150308 | Msa0015580:intron | 35.0% | |
| TGTATAGTGCACGTGTAATA+AGG | + | chr1_1:25150335-25150354 | None:intergenic | 35.0% | |
| GTGCACTATACATACATACA+GGG | - | chr1_1:25150343-25150362 | Msa0015580:intron | 35.0% | |
| TGCACTATACATACATACAG+GGG | - | chr1_1:25150344-25150363 | Msa0015580:intron | 35.0% | |
| CGAAGCTAAGTAACAACTAT+GGG | - | chr1_1:25150367-25150386 | Msa0015580:intron | 35.0% | |
| GAAGCTAAGTAACAACTATG+GGG | - | chr1_1:25150368-25150387 | Msa0015580:intron | 35.0% | |
| !!! | AGCTAGCAACTTTTTTACGA+GGG | + | chr1_1:25150696-25150715 | None:intergenic | 35.0% |
| !!! | AAGCTAGCAACTTTTTTACG+AGG | + | chr1_1:25150697-25150716 | None:intergenic | 35.0% |
| ! | TCACGTTCTTTTGTGTTTCT+TGG | - | chr1_1:25150784-25150803 | Msa0015580:CDS | 35.0% |
| ! | TTTCTTGGTCAGTTGCATTT+TGG | - | chr1_1:25150799-25150818 | Msa0015580:CDS | 35.0% |
| ! | TTCTTGGTCAGTTGCATTTT+GGG | - | chr1_1:25150800-25150819 | Msa0015580:CDS | 35.0% |
| TATTGGGCAAAGTAAGATGT+AGG | + | chr1_1:25150834-25150853 | None:intergenic | 35.0% | |
| AATGAAACATCTTCACGTGA+GGG | + | chr1_1:25150961-25150980 | None:intergenic | 35.0% | |
| AAATGAAACATCTTCACGTG+AGG | + | chr1_1:25150962-25150981 | None:intergenic | 35.0% | |
| AGGGTTAAAGTGATCTCATT+AGG | + | chr1_1:25151071-25151090 | None:intergenic | 35.0% | |
| ! | AATAACTTGCAGAAGCTGTT+TGG | + | chr1_1:25151115-25151134 | None:intergenic | 35.0% |
| ! | TGTTAGACTAATGGATGAAG+TGG | - | chr1_1:25151358-25151377 | Msa0015580:intron | 35.0% |
| ! | AGCAAAGTGCTTTGTGAATA+TGG | + | chr1_1:25151387-25151406 | None:intergenic | 35.0% |
| TTAAAACCTCAAGTGCAGAA+AGG | - | chr1_1:25151437-25151456 | Msa0015580:intron | 35.0% | |
| GAAGTTATTACCGACAAAGA+AGG | + | chr1_1:25151477-25151496 | None:intergenic | 35.0% | |
| CAACCGAACTCTAAATTATC+AGG | - | chr1_1:25151650-25151669 | Msa0015580:intron | 35.0% | |
| ! | GACCCTGATAATTTAGAGTT+CGG | + | chr1_1:25151656-25151675 | None:intergenic | 35.0% |
| ATCGTCTGATTCTCAAAAGA+AGG | + | chr1_1:25151680-25151699 | None:intergenic | 35.0% | |
| AAGAGAGAAGAGAGAGAAAA+TGG | + | chr1_1:25151921-25151940 | None:intergenic | 35.0% | |
| TCTCTTCTCTCTCATTTCTT+TGG | - | chr1_1:25151944-25151963 | Msa0015580:intron | 35.0% | |
| AGAGAAAATACCACACAAGT+GGG | + | chr1_1:25152124-25152143 | None:intergenic | 35.0% | |
| CATTAACAACTTATCACAGC+TGG | - | chr1_1:25152354-25152373 | Msa0015580:intron | 35.0% | |
| AGTCTACACTTGTTCATGTA+TGG | - | chr1_1:25152609-25152628 | Msa0015580:intron | 35.0% | |
| TAACCAGAAGAAGAATTCCA+GGG | + | chr1_1:25152827-25152846 | None:intergenic | 35.0% | |
| ! | CGACATTTCATGGACTATTA+TGG | - | chr1_1:25152982-25153001 | Msa0015580:CDS | 35.0% |
| GGCGATAGAATATATCTAAC+GGG | + | chr1_1:25153076-25153095 | None:intergenic | 35.0% | |
| GGGCGATAGAATATATCTAA+CGG | + | chr1_1:25153077-25153096 | None:intergenic | 35.0% | |
| ! | AGTCTGCTCTCCATTTTATA+AGG | - | chr1_1:25153133-25153152 | Msa0015580:intron | 35.0% |
| ATTACTACAGGTTCTTCTAG+TGG | - | chr1_1:25153254-25153273 | Msa0015580:intron | 35.0% | |
| GTATACAGATACCATTGCTA+AGG | - | chr1_1:25153402-25153421 | Msa0015580:intron | 35.0% | |
| ! | ACATTAAAAGCATACCTGGA+GGG | + | chr1_1:25153558-25153577 | None:intergenic | 35.0% |
| ! | AACATTAAAAGCATACCTGG+AGG | + | chr1_1:25153559-25153578 | None:intergenic | 35.0% |
| TGTGATAATCACTTCTGTGA+TGG | - | chr1_1:25153787-25153806 | Msa0015580:intron | 35.0% | |
| ! | ATTGGGATTTTGTCAAGGAT+TGG | - | chr1_1:25153828-25153847 | Msa0015580:intron | 35.0% |
| ! | TTGGGATTTTGTCAAGGATT+GGG | - | chr1_1:25153829-25153848 | Msa0015580:intron | 35.0% |
| GAGCATATACTACATGTCTA+TGG | - | chr1_1:25153913-25153932 | Msa0015580:intron | 35.0% | |
| ! | GAATTTGGCTTCGGTTAAAT+TGG | - | chr1_1:25153983-25154002 | Msa0015580:intron | 35.0% |
| !!! | AAGAAGTTACCGCTTTTTTG+TGG | + | chr1_1:25154043-25154062 | None:intergenic | 35.0% |
| !! | TTTTATTTAGGCTAATCGGG+CGG | + | chr1_1:25154237-25154256 | None:intergenic | 35.0% |
| !!! | GGTCAAGTGTCTCTTTTTTT+GGG | - | chr1_1:25154277-25154296 | Msa0015580:intron | 35.0% |
| AAAAATGGACATTGGATTGC+AGG | - | chr1_1:25154329-25154348 | Msa0015580:intron | 35.0% | |
| ! | TCTAACAACCTTGTTTGAAC+AGG | + | chr1_1:25154414-25154433 | None:intergenic | 35.0% |
| ! | ATTTCTGTTAGCTTCATTGG+AGG | - | chr1_1:25154434-25154453 | Msa0015580:intron | 35.0% |
| TCATTGGAGGTTATTAGAAG+AGG | - | chr1_1:25154447-25154466 | Msa0015580:intron | 35.0% | |
| CATTGGAGGTTATTAGAAGA+GGG | - | chr1_1:25154448-25154467 | Msa0015580:intron | 35.0% | |
| !! | TAACTTGTTTGTGAACAGGT+TGG | - | chr1_1:25154594-25154613 | Msa0015580:intron | 35.0% |
| AACGAGCATCTAAACAATGT+TGG | - | chr1_1:25154619-25154638 | Msa0015580:intron | 35.0% | |
| ! | CGCATCTTTTACATCACAAT+TGG | + | chr1_1:25154807-25154826 | None:intergenic | 35.0% |
| TAAAAGATGCGCATTGCAAA+TGG | - | chr1_1:25154816-25154835 | Msa0015580:CDS | 35.0% | |
| GCGGATAGAAGAATGTAAAG+AGG | + | chr1_1:25144200-25144219 | None:intergenic | 40.0% | |
| AGAGAAAGTAGGTGAAGTAG+GGG | + | chr1_1:25144227-25144246 | None:intergenic | 40.0% | |
| GAGAGAAAGTAGGTGAAGTA+GGG | + | chr1_1:25144228-25144247 | None:intergenic | 40.0% | |
| TGAGAGAAAGTAGGTGAAGT+AGG | + | chr1_1:25144229-25144248 | None:intergenic | 40.0% | |
| ! | TTGGGAGCTTGTTCTTCTTT+AGG | + | chr1_1:25144379-25144398 | None:intergenic | 40.0% |
| AAAGAAGAACAAGCTCCCAA+AGG | - | chr1_1:25144379-25144398 | Msa0015580:three_prime_UTR | 40.0% | |
| TCATTCATGGCTTCATTAGC+TGG | - | chr1_1:25144863-25144882 | Msa0015580:CDS | 40.0% | |
| TCAACTTGACCGGAAATCAT+GGG | - | chr1_1:25145219-25145238 | Msa0015580:intron | 40.0% | |
| ! | ATGGTGGGACTGAAATCTAA+TGG | - | chr1_1:25145261-25145280 | Msa0015580:intron | 40.0% |
| ATGCGATGGCACAAAATTGA+TGG | - | chr1_1:25145432-25145451 | Msa0015580:CDS | 40.0% | |
| ACGAGTTTGGCATTATTGAG+GGG | - | chr1_1:25146069-25146088 | Msa0015580:intron | 40.0% | |
| AAGAGAGTGAGTTTCTTGAG+AGG | - | chr1_1:25146414-25146433 | Msa0015580:intron | 40.0% | |
| AGAGAGTGAGTTTCTTGAGA+GGG | - | chr1_1:25146415-25146434 | Msa0015580:intron | 40.0% | |
| !!! | TCGGCGGCAGATTATTTTTT+CGG | + | chr1_1:25146505-25146524 | None:intergenic | 40.0% |
| GTCTAAACCTCTAGTAGAAG+AGG | - | chr1_1:25146772-25146791 | Msa0015580:intron | 40.0% | |
| AAATCGGAGTCCTTAAACTC+AGG | - | chr1_1:25146933-25146952 | Msa0015580:intron | 40.0% | |
| AATCGGAGTCCTTAAACTCA+GGG | - | chr1_1:25146934-25146953 | Msa0015580:intron | 40.0% | |
| CATAGCCCTTCATTAGTATG+AGG | - | chr1_1:25146958-25146977 | Msa0015580:intron | 40.0% | |
| GGCTACCTCATACTAATGAA+GGG | + | chr1_1:25146966-25146985 | None:intergenic | 40.0% | |
| TGGCTACCTCATACTAATGA+AGG | + | chr1_1:25146967-25146986 | None:intergenic | 40.0% | |
| TCATTAGTATGAGGTAGCCA+AGG | - | chr1_1:25146967-25146986 | Msa0015580:intron | 40.0% | |
| !! | ATCAAAAGGCACTTGGAGAA+AGG | + | chr1_1:25148107-25148126 | None:intergenic | 40.0% |
| !! | GCACTAAATCAAAAGGCACT+TGG | + | chr1_1:25148114-25148133 | None:intergenic | 40.0% |
| CACACCAACAAAGGCTATAA+CGG | - | chr1_1:25148498-25148517 | Msa0015580:intron | 40.0% | |
| !! | GGCTGTTACTTCCATTTTGT+GGG | - | chr1_1:25148519-25148538 | Msa0015580:intron | 40.0% |
| !! | TGTTACTTCCATTTTGTGGG+AGG | - | chr1_1:25148522-25148541 | Msa0015580:intron | 40.0% |
| ! | TTCCATTTTGTGGGAGGATT+TGG | - | chr1_1:25148528-25148547 | Msa0015580:intron | 40.0% |
| GTTGAACTCTATAAAGGCCT+TGG | - | chr1_1:25148637-25148656 | Msa0015580:intron | 40.0% | |
| !!! | TGTAAGTTTTGAGAAGGCCA+AGG | + | chr1_1:25148657-25148676 | None:intergenic | 40.0% |
| ! | TTGGCCTTCTCAAAACTTAC+AGG | - | chr1_1:25148656-25148675 | Msa0015580:intron | 40.0% |
| CAGTAGAGCACGTAAAATGT+TGG | - | chr1_1:25148969-25148988 | Msa0015580:intron | 40.0% | |
| ! | TTGGATAATTGGTGACTTGG+TGG | - | chr1_1:25148988-25149007 | Msa0015580:CDS | 40.0% |
| !! | TGGATAATTGGTGACTTGGT+GGG | - | chr1_1:25148989-25149008 | Msa0015580:CDS | 40.0% |
| GGATATTAGCTGGGTATTAG+TGG | - | chr1_1:25149010-25149029 | Msa0015580:CDS | 40.0% | |
| GGTCTTGATTATCCGATGTT+CGG | - | chr1_1:25149455-25149474 | Msa0015580:intron | 40.0% | |
| TGATTATCCGATGTTCGGTT+AGG | - | chr1_1:25149460-25149479 | Msa0015580:intron | 40.0% | |
| TGGCAGCTCACTAAATATAG+TGG | - | chr1_1:25150256-25150275 | Msa0015580:intron | 40.0% | |
| CGTGCACTATACATACATAC+AGG | - | chr1_1:25150342-25150361 | Msa0015580:intron | 40.0% | |
| GCGAAGCTAAGTAACAACTA+TGG | - | chr1_1:25150366-25150385 | Msa0015580:intron | 40.0% | |
| TAACAACTATGGGGTAGCAT+TGG | - | chr1_1:25150377-25150396 | Msa0015580:intron | 40.0% | |
| !!! | CTAGCAACTTTTTTACGAGG+GGG | + | chr1_1:25150694-25150713 | None:intergenic | 40.0% |
| !!! | GCTAGCAACTTTTTTACGAG+GGG | + | chr1_1:25150695-25150714 | None:intergenic | 40.0% |
| AACCCTATTGATCAATCAGG+TGG | - | chr1_1:25151085-25151104 | Msa0015580:intron | 40.0% | |
| AGCCACCTGATTGATCAATA+GGG | + | chr1_1:25151090-25151109 | None:intergenic | 40.0% | |
| AAGCCACCTGATTGATCAAT+AGG | + | chr1_1:25151091-25151110 | None:intergenic | 40.0% | |
| AGTGCAGAAAGGTTCTCATA+TGG | - | chr1_1:25151448-25151467 | Msa0015580:intron | 40.0% | |
| CATATGGTCACCTTCTTTGT+CGG | - | chr1_1:25151464-25151483 | Msa0015580:intron | 40.0% | |
| CTGATGTGATTGTCACATAG+TGG | - | chr1_1:25151783-25151802 | Msa0015580:intron | 40.0% | |
| TATTCCGAGAAAGACTTGTG+TGG | - | chr1_1:25151833-25151852 | Msa0015580:intron | 40.0% | |
| TTTGGTTGTGACCACACAAT+GGG | - | chr1_1:25151962-25151981 | Msa0015580:intron | 40.0% | |
| GAAAATACTTGTGTGGACCA+GGG | + | chr1_1:25151995-25152014 | None:intergenic | 40.0% | |
| TTCTCTACAGGGTTATGTAC+AGG | - | chr1_1:25152060-25152079 | Msa0015580:intron | 40.0% | |
| GAGAGAAAATACCACACAAG+TGG | + | chr1_1:25152125-25152144 | None:intergenic | 40.0% | |
| ! | ATATAAGCTGGCTCAGTGTT+AGG | + | chr1_1:25152147-25152166 | None:intergenic | 40.0% |
| TAACACTGAGCCAGCTTATA+TGG | - | chr1_1:25152146-25152165 | Msa0015580:intron | 40.0% | |
| TAGACTGCTTCCATATAAGC+TGG | + | chr1_1:25152159-25152178 | None:intergenic | 40.0% | |
| AGAAGTTGTACCTGAAGACA+GGG | + | chr1_1:25152182-25152201 | None:intergenic | 40.0% | |
| TCTTCAGGTACAACTTCTCA+TGG | - | chr1_1:25152184-25152203 | Msa0015580:intron | 40.0% | |
| ! | TTTAGTTCGCGAGCTGTAAT+TGG | + | chr1_1:25152314-25152333 | None:intergenic | 40.0% |
| ATGGATGCAACCTATACATG+TGG | - | chr1_1:25152628-25152647 | Msa0015580:intron | 40.0% | |
| ATGCAACCTATACATGTGGA+AGG | - | chr1_1:25152632-25152651 | Msa0015580:intron | 40.0% | |
| TTGTAGCCTTCCACATGTAT+AGG | + | chr1_1:25152641-25152660 | None:intergenic | 40.0% | |
| CTATGCTTTAATGCTGTGCT+TGG | + | chr1_1:25152696-25152715 | None:intergenic | 40.0% | |
| TATTCATGACTGCTGTGGTT+GGG | - | chr1_1:25152739-25152758 | Msa0015580:CDS | 40.0% | |
| TGGTTGTGCATCTTCTTCTT+AGG | - | chr1_1:25152766-25152785 | Msa0015580:CDS | 40.0% | |
| GGTTGTGCATCTTCTTCTTA+GGG | - | chr1_1:25152767-25152786 | Msa0015580:CDS | 40.0% | |
| CTAACCAGAAGAAGAATTCC+AGG | + | chr1_1:25152828-25152847 | None:intergenic | 40.0% | |
| GTTCAAAATCAGCAGCACAA+AGG | + | chr1_1:25153012-25153031 | None:intergenic | 40.0% | |
| ! | GATACCATTGCTAAGGCATT+TGG | - | chr1_1:25153409-25153428 | Msa0015580:intron | 40.0% |
| CAGAATGACAAGTTTCAGGA+TGG | + | chr1_1:25153478-25153497 | None:intergenic | 40.0% | |
| CATCCTGAAACTTGTCATTC+TGG | - | chr1_1:25153476-25153495 | Msa0015580:intron | 40.0% | |
| CTTCCAGAATGACAAGTTTC+AGG | + | chr1_1:25153482-25153501 | None:intergenic | 40.0% | |
| TGACTCTGATGTTGCACATT+TGG | - | chr1_1:25153676-25153695 | Msa0015580:intron | 40.0% | |
| TGTTGCACATTTGGCTAACA+TGG | - | chr1_1:25153685-25153704 | Msa0015580:intron | 40.0% | |
| GTTGCACATTTGGCTAACAT+GGG | - | chr1_1:25153686-25153705 | Msa0015580:intron | 40.0% | |
| TTGCACATTTGGCTAACATG+GGG | - | chr1_1:25153687-25153706 | Msa0015580:intron | 40.0% | |
| ! | TGGGATTTTGTCAAGGATTG+GGG | - | chr1_1:25153830-25153849 | Msa0015580:intron | 40.0% |
| ATCCTAACTCCAGAAATGCA+TGG | - | chr1_1:25153861-25153880 | Msa0015580:intron | 40.0% | |
| ATCTCTAAGCCATGCATTTC+TGG | + | chr1_1:25153873-25153892 | None:intergenic | 40.0% | |
| CTAAAATACGTTCAATCGGG+TGG | + | chr1_1:25154009-25154028 | None:intergenic | 40.0% | |
| TGGGTTTAGCCACAAAAAAG+CGG | - | chr1_1:25154031-25154050 | Msa0015580:intron | 40.0% | |
| TTTATTTAGGCTAATCGGGC+GGG | + | chr1_1:25154236-25154255 | None:intergenic | 40.0% | |
| AATATTAGGGTTGTGTCGGA+CGG | - | chr1_1:25154255-25154274 | Msa0015580:intron | 40.0% | |
| !!! | GGGTCAAGTGTCTCTTTTTT+TGG | - | chr1_1:25154276-25154295 | Msa0015580:intron | 40.0% |
| ACTGTCATGCACTTCAAAGT+GGG | - | chr1_1:25154387-25154406 | Msa0015580:intron | 40.0% | |
| ! | AGGTTATTAGAAGAGGGCAT+TGG | - | chr1_1:25154454-25154473 | Msa0015580:intron | 40.0% |
| GATGCAGATTCGGATAATTG+AGG | - | chr1_1:25154682-25154701 | Msa0015580:intron | 40.0% | |
| AGAAAGTAGGTGAAGTAGGG+GGG | + | chr1_1:25144225-25144244 | None:intergenic | 45.0% | |
| GAGAAAGTAGGTGAAGTAGG+GGG | + | chr1_1:25144226-25144245 | None:intergenic | 45.0% | |
| GAGTAGCCAAAGTCTCCTTT+GGG | + | chr1_1:25144397-25144416 | None:intergenic | 45.0% | |
| GAAGCCATGAATGAAAGGGA+GGG | + | chr1_1:25144857-25144876 | None:intergenic | 45.0% | |
| TGAAGCCATGAATGAAAGGG+AGG | + | chr1_1:25144858-25144877 | None:intergenic | 45.0% | |
| ! | CACATTTTGCGCACAACTAC+CGG | + | chr1_1:25145017-25145036 | None:intergenic | 45.0% |
| CTCAACTTGACCGGAAATCA+TGG | - | chr1_1:25145218-25145237 | Msa0015580:intron | 45.0% | |
| TTTGTGCCATCGCATACACT+AGG | + | chr1_1:25145427-25145446 | None:intergenic | 45.0% | |
| ATGTCGTGTTATGCTAGGTG+AGG | - | chr1_1:25146252-25146271 | Msa0015580:intron | 45.0% | |
| CTAGGTGAGGAGGAAAATGA+TGG | - | chr1_1:25146265-25146284 | Msa0015580:intron | 45.0% | |
| GATGGAGGATAGTGAAGAAG+AGG | - | chr1_1:25146283-25146302 | Msa0015580:intron | 45.0% | |
| GAGAGTGAGTTTCTTGAGAG+GGG | - | chr1_1:25146416-25146435 | Msa0015580:intron | 45.0% | |
| !!! | GCAGATTATTTTTTCGGCGC+CGG | + | chr1_1:25146499-25146518 | None:intergenic | 45.0% |
| ! | ATCTCGGCGTTGGAATTTCT+CGG | + | chr1_1:25146524-25146543 | None:intergenic | 45.0% |
| GGGAGAACGAGAGAAAATCT+CGG | + | chr1_1:25146540-25146559 | None:intergenic | 45.0% | |
| AGTCTAGCCTCTTCTACTAG+AGG | + | chr1_1:25146782-25146801 | None:intergenic | 45.0% | |
| ATCGGAGTCCTTAAACTCAG+GGG | - | chr1_1:25146935-25146954 | Msa0015580:intron | 45.0% | |
| TATAGCCTTTGTTGGTGTGG+TGG | + | chr1_1:25148497-25148516 | None:intergenic | 45.0% | |
| CGTTATAGCCTTTGTTGGTG+TGG | + | chr1_1:25148500-25148519 | None:intergenic | 45.0% | |
| ACAGCCGTTATAGCCTTTGT+TGG | + | chr1_1:25148505-25148524 | None:intergenic | 45.0% | |
| !! | CGGCTGTTACTTCCATTTTG+TGG | - | chr1_1:25148518-25148537 | Msa0015580:intron | 45.0% |
| CACCAAATCCTCCCACAAAA+TGG | + | chr1_1:25148533-25148552 | None:intergenic | 45.0% | |
| !! | TGACTTGGTGGGATATTAGC+TGG | - | chr1_1:25149000-25149019 | Msa0015580:CDS | 45.0% |
| !! | GACTTGGTGGGATATTAGCT+GGG | - | chr1_1:25149001-25149020 | Msa0015580:CDS | 45.0% |
| GAAGTGGTTTCGGTTAGAAC+AGG | + | chr1_1:25149360-25149379 | None:intergenic | 45.0% | |
| ! | TGTTAATCCTCTGGTTCCCA+GGG | - | chr1_1:25149426-25149445 | Msa0015580:intron | 45.0% |
| ! | AATCAAGACCCCTTTTCCCT+GGG | + | chr1_1:25149445-25149464 | None:intergenic | 45.0% |
| ! | TAATCAAGACCCCTTTTCCC+TGG | + | chr1_1:25149446-25149465 | None:intergenic | 45.0% |
| TTGTCCCTGTGAGCTTAACT+CGG | - | chr1_1:25149769-25149788 | Msa0015580:intron | 45.0% | |
| !! | AACAGTGTCGATGCCTGAAA+AGG | - | chr1_1:25150069-25150088 | Msa0015580:intron | 45.0% |
| TGAGAACCTTTCTGCACTTG+AGG | + | chr1_1:25151446-25151465 | None:intergenic | 45.0% | |
| TGGTCCACACAAGTCTTTCT+CGG | + | chr1_1:25151840-25151859 | None:intergenic | 45.0% | |
| TGTGACCAAACCCAATTGTG+TGG | + | chr1_1:25151866-25151885 | None:intergenic | 45.0% | |
| CTTTGGTTGTGACCACACAA+TGG | - | chr1_1:25151961-25151980 | Msa0015580:intron | 45.0% | |
| TTGGTTGTGACCACACAATG+GGG | - | chr1_1:25151963-25151982 | Msa0015580:intron | 45.0% | |
| GGAAAATACTTGTGTGGACC+AGG | + | chr1_1:25151996-25152015 | None:intergenic | 45.0% | |
| GAGAAGTTGTACCTGAAGAC+AGG | + | chr1_1:25152183-25152202 | None:intergenic | 45.0% | |
| CACTGTATTCATGACTGCTG+TGG | - | chr1_1:25152734-25152753 | Msa0015580:CDS | 45.0% | |
| GTATTCATGACTGCTGTGGT+TGG | - | chr1_1:25152738-25152757 | Msa0015580:CDS | 45.0% | |
| !!! | TAGGGCTGCAGGATTTTTTC+CGG | - | chr1_1:25152785-25152804 | Msa0015580:CDS | 45.0% |
| CAGAAGAAGAATTCCAGGGA+TGG | + | chr1_1:25152823-25152842 | None:intergenic | 45.0% | |
| CATCCCTGGAATTCTTCTTC+TGG | - | chr1_1:25152821-25152840 | Msa0015580:CDS | 45.0% | |
| ATCACTGGACCGACATTTCA+TGG | - | chr1_1:25152972-25152991 | Msa0015580:CDS | 45.0% | |
| GGATGAAGCAGAAACGAGTT+GGG | + | chr1_1:25153097-25153116 | None:intergenic | 45.0% | |
| GTCTCCAAATGCCTTAGCAA+TGG | + | chr1_1:25153416-25153435 | None:intergenic | 45.0% | |
| ! | CTAAGGCATTTGGAGACAAC+TGG | - | chr1_1:25153419-25153438 | Msa0015580:intron | 45.0% |
| ! | GGGATTTTGTCAAGGATTGG+GGG | - | chr1_1:25153831-25153850 | Msa0015580:intron | 45.0% |
| !! | AGCCATGCATTTCTGGAGTT+AGG | + | chr1_1:25153866-25153885 | None:intergenic | 45.0% |
| GCATTGCCTGATTGTGTAAC+CGG | - | chr1_1:25154126-25154145 | Msa0015580:intron | 45.0% | |
| CATTGCCTGATTGTGTAACC+GGG | - | chr1_1:25154127-25154146 | Msa0015580:intron | 45.0% | |
| ! | TTTTGCCCGGTTACACAATC+AGG | + | chr1_1:25154135-25154154 | None:intergenic | 45.0% |
| TTATTTAGGCTAATCGGGCG+GGG | + | chr1_1:25154235-25154254 | None:intergenic | 45.0% | |
| ATATTAGGGTTGTGTCGGAC+GGG | - | chr1_1:25154256-25154275 | Msa0015580:intron | 45.0% | |
| GACTGTCATGCACTTCAAAG+TGG | - | chr1_1:25154386-25154405 | Msa0015580:intron | 45.0% | |
| CTGTCATGCACTTCAAAGTG+GGG | - | chr1_1:25154388-25154407 | Msa0015580:intron | 45.0% | |
| !! | GAGGGCATTGGAATTTCTAC+AGG | - | chr1_1:25154466-25154485 | Msa0015580:intron | 45.0% |
| TCTGCATCACGAAAGGGTAA+TGG | + | chr1_1:25154670-25154689 | None:intergenic | 45.0% | |
| ACCCTTTCGTGATGCAGATT+CGG | - | chr1_1:25154672-25154691 | Msa0015580:intron | 45.0% | |
| TCCGAATCTGCATCACGAAA+GGG | + | chr1_1:25154676-25154695 | None:intergenic | 45.0% | |
| ATCCGAATCTGCATCACGAA+AGG | + | chr1_1:25154677-25154696 | None:intergenic | 45.0% | |
| !! | AAAATAAATAAATAAGTATA+TGG | - | chr1_1:25144791-25144810 | Msa0015580:intron | 5.0% |
| !!! | TTTATTTTTTTCTTTAAATT+TGG | - | chr1_1:25147713-25147732 | Msa0015580:intron | 5.0% |
| !! | AAAAAAATACATAAAATTAA+AGG | - | chr1_1:25148834-25148853 | Msa0015580:intron | 5.0% |
| !!! | AATTTTTTTAATCAATTTAA+TGG | + | chr1_1:25149404-25149423 | None:intergenic | 5.0% |
| !! | ATTAAATTGATTAAAAAAAT+TGG | - | chr1_1:25149403-25149422 | Msa0015580:intron | 5.0% |
| !!! | AAAAATAATTTTTTTACATT+AGG | - | chr1_1:25150668-25150687 | Msa0015580:CDS | 5.0% |
| GAAAGTAGGTGAAGTAGGGG+GGG | + | chr1_1:25144224-25144243 | None:intergenic | 50.0% | |
| CAAGCTCCCAAAGGAGACTT+TGG | - | chr1_1:25144388-25144407 | Msa0015580:three_prime_UTR | 50.0% | |
| GGAGTAGCCAAAGTCTCCTT+TGG | + | chr1_1:25144398-25144417 | None:intergenic | 50.0% | |
| ACAGCCCTCCCTTTCATTCA+TGG | - | chr1_1:25144850-25144869 | Msa0015580:CDS | 50.0% | |
| CTTGACCGGAAATCATGGGA+TGG | - | chr1_1:25145223-25145242 | Msa0015580:intron | 50.0% | |
| ATGGGATGGTGCGGAAATCA+TGG | - | chr1_1:25145237-25145256 | Msa0015580:intron | 50.0% | |
| TGGGATGGTGCGGAAATCAT+GGG | - | chr1_1:25145238-25145257 | Msa0015580:intron | 50.0% | |
| ATGGTGCGGAAATCATGGGA+TGG | - | chr1_1:25145242-25145261 | Msa0015580:intron | 50.0% | |
| TGCGGAAATCATGGGATGGT+GGG | - | chr1_1:25145246-25145265 | Msa0015580:intron | 50.0% | |
| TCGTGTTATGCTAGGTGAGG+AGG | - | chr1_1:25146255-25146274 | Msa0015580:intron | 50.0% | |
| GGTGAGGAGGAAAATGATGG+AGG | - | chr1_1:25146268-25146287 | Msa0015580:intron | 50.0% | |
| ACGAGAGAAAATCTCGGCGT+TGG | + | chr1_1:25146534-25146553 | None:intergenic | 50.0% | |
| TTCGGTTAGAACAGGTGTGC+TGG | + | chr1_1:25149352-25149371 | None:intergenic | 50.0% | |
| ! | GTGTTAATCCTCTGGTTCCC+AGG | - | chr1_1:25149425-25149444 | Msa0015580:intron | 50.0% |
| CCAACCGAGTTAAGCTCACA+GGG | + | chr1_1:25149776-25149795 | None:intergenic | 50.0% | |
| ACCAACCGAGTTAAGCTCAC+AGG | + | chr1_1:25149777-25149796 | None:intergenic | 50.0% | |
| GTGAGCTTAACTCGGTTGGT+AGG | - | chr1_1:25149777-25149796 | Msa0015580:intron | 50.0% | |
| AGGAGTCATGGTTCGAACTC+TGG | - | chr1_1:25149823-25149842 | Msa0015580:intron | 50.0% | |
| GATGCCTGAAAAGGACCAGT+GGG | - | chr1_1:25150078-25150097 | Msa0015580:intron | 50.0% | |
| AAAAGGACCAGTGGGACTGT+GGG | - | chr1_1:25150086-25150105 | Msa0015580:intron | 50.0% | |
| GAGAAAGACTTGTGTGGACC+AGG | - | chr1_1:25151839-25151858 | Msa0015580:intron | 50.0% | |
| TGGACCAGGACCACACAATT+GGG | - | chr1_1:25151853-25151872 | Msa0015580:intron | 50.0% | |
| CAAACCCAATTGTGTGGTCC+TGG | + | chr1_1:25151860-25151879 | None:intergenic | 50.0% | |
| CAGGACCACACAATTGGGTT+TGG | - | chr1_1:25151858-25151877 | Msa0015580:intron | 50.0% | |
| TGTGACCACACAATGGGGTT+TGG | - | chr1_1:25151968-25151987 | Msa0015580:intron | 50.0% | |
| AAGCAGTCTACCCTGTCTTC+AGG | - | chr1_1:25152169-25152188 | Msa0015580:intron | 50.0% | |
| CATCTTCTTCTTAGGGCTGC+AGG | - | chr1_1:25152774-25152793 | Msa0015580:CDS | 50.0% | |
| !!! | AGGGCTGCAGGATTTTTTCC+GGG | - | chr1_1:25152786-25152805 | Msa0015580:CDS | 50.0% |
| CGGATGAAGCAGAAACGAGT+TGG | + | chr1_1:25153098-25153117 | None:intergenic | 50.0% | |
| GGCTGATCAACTTACTAGCC+AGG | - | chr1_1:25153287-25153306 | Msa0015580:intron | 50.0% | |
| ! | TGGAGGGCACGCCAAAAATA+TGG | + | chr1_1:25153542-25153561 | None:intergenic | 50.0% |
| !!! | ATATTTTTGGCGTGCCCTCC+AGG | - | chr1_1:25153541-25153560 | Msa0015580:intron | 50.0% |
| ! | GGGGAAGTATGTGTCTGCAA+TGG | - | chr1_1:25153706-25153725 | Msa0015580:intron | 50.0% |
| GCCATATGTTACTCTAGCCC+CGG | + | chr1_1:25153738-25153757 | None:intergenic | 50.0% | |
| GGGCTAGAGTAACATATGGC+AGG | - | chr1_1:25153738-25153757 | Msa0015580:intron | 50.0% | |
| TATTTAGGCTAATCGGGCGG+GGG | + | chr1_1:25154234-25154253 | None:intergenic | 50.0% | |
| AAGTGGGGCCTGTTCAAACA+AGG | - | chr1_1:25154403-25154422 | Msa0015580:intron | 50.0% | |
| CCGCACCATCCCATGATTTC+CGG | + | chr1_1:25145231-25145250 | None:intergenic | 55.0% | |
| CCGGAAATCATGGGATGGTG+CGG | - | chr1_1:25145228-25145247 | Msa0015580:intron | 55.0% | |
| GTGCGGAAATCATGGGATGG+TGG | - | chr1_1:25145245-25145264 | Msa0015580:intron | 55.0% | |
| GAGACGCCTAGTGTATGCGA+TGG | - | chr1_1:25145418-25145437 | Msa0015580:CDS | 55.0% | |
| ! | TCGGCGTTGGAATTTCTCGG+CGG | + | chr1_1:25146521-25146540 | None:intergenic | 55.0% |
| GGGCTATGCCCCTGAGTTTA+AGG | + | chr1_1:25146946-25146965 | None:intergenic | 55.0% | |
| TCCAGCCACCACACCAACAA+AGG | - | chr1_1:25148489-25148508 | Msa0015580:intron | 55.0% | |
| ! | TCCTCTGGTTCCCAGGGAAA+AGG | - | chr1_1:25149432-25149451 | Msa0015580:intron | 55.0% |
| ! | CCTCTGGTTCCCAGGGAAAA+GGG | - | chr1_1:25149433-25149452 | Msa0015580:intron | 55.0% |
| ! | CTCTGGTTCCCAGGGAAAAG+GGG | - | chr1_1:25149434-25149453 | Msa0015580:intron | 55.0% |
| CCCTGTGAGCTTAACTCGGT+TGG | - | chr1_1:25149773-25149792 | Msa0015580:intron | 55.0% | |
| CGATGCCTGAAAAGGACCAG+TGG | - | chr1_1:25150077-25150096 | Msa0015580:intron | 55.0% | |
| ! | CAGTCCCACTGGTCCTTTTC+AGG | + | chr1_1:25150085-25150104 | None:intergenic | 55.0% |
| GAAAAGGACCAGTGGGACTG+TGG | - | chr1_1:25150085-25150104 | Msa0015580:intron | 55.0% | |
| GTGGACCAGGACCACACAAT+TGG | - | chr1_1:25151852-25151871 | Msa0015580:intron | 55.0% | |
| AGGGACCAAACCCCATTGTG+TGG | + | chr1_1:25151976-25151995 | None:intergenic | 55.0% | |
| ! | ACACAATGGGGTTTGGTCCC+TGG | - | chr1_1:25151975-25151994 | Msa0015580:intron | 55.0% |
| GCAATCTTGGCCCACTTGTG+TGG | - | chr1_1:25152111-25152130 | Msa0015580:intron | 55.0% | |
| GACTGCTGTGGTTGGGTCAA+TGG | - | chr1_1:25152746-25152765 | Msa0015580:CDS | 55.0% | |
| GGGATGGCATCAACATTGCC+CGG | + | chr1_1:25152807-25152826 | None:intergenic | 55.0% | |
| GGCAATGTTGATGCCATCCC+TGG | - | chr1_1:25152807-25152826 | Msa0015580:CDS | 55.0% | |
| GTGTCTGCAATGGTTGCAGC+CGG | - | chr1_1:25153716-25153735 | Msa0015580:intron | 55.0% | |
| TGTCTGCAATGGTTGCAGCC+GGG | - | chr1_1:25153717-25153736 | Msa0015580:intron | 55.0% | |
| GCCGGGGCTAGAGTAACATA+TGG | - | chr1_1:25153734-25153753 | Msa0015580:intron | 55.0% | |
| TAGGTGAAGTAGGGGGGGTG+CGG | + | chr1_1:25144219-25144238 | None:intergenic | 60.0% | |
| GCCTTTGTTGGTGTGGTGGC+TGG | + | chr1_1:25148493-25148512 | None:intergenic | 60.0% | |
| ! | CCCTTTTCCCTGGGAACCAG+AGG | + | chr1_1:25149436-25149455 | None:intergenic | 60.0% |
| GTCTGCAATGGTTGCAGCCG+GGG | - | chr1_1:25153718-25153737 | Msa0015580:intron | 60.0% | |
| TGCTGCTCCCACAGTCCCAC+TGG | + | chr1_1:25150096-25150115 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 25144180 | 25155114 | 25144180 | ID=Msa0015580;Name=Msa0015580 |
| chr1_1 | mRNA | 25144180 | 25155114 | 25144180 | ID=Msa0015580-mRNA-1;Parent=Msa0015580;Name=Msa0015580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=82|1|1|1|0.92|0.86|15|315|772 |
| chr1_1 | exon | 25144180 | 25144213 | 25144180 | ID=Msa0015580-mRNA-1:exon:8695;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25144311 | 25144682 | 25144311 | ID=Msa0015580-mRNA-1:exon:8694;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25144807 | 25144943 | 25144807 | ID=Msa0015580-mRNA-1:exon:8693;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25145360 | 25145638 | 25145360 | ID=Msa0015580-mRNA-1:exon:8692;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25145732 | 25145884 | 25145732 | ID=Msa0015580-mRNA-1:exon:8691;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25145986 | 25146030 | 25145986 | ID=Msa0015580-mRNA-1:exon:8690;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25146140 | 25146244 | 25146140 | ID=Msa0015580-mRNA-1:exon:8689;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25146452 | 25146701 | 25146452 | ID=Msa0015580-mRNA-1:exon:8688;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25147104 | 25147224 | 25147104 | ID=Msa0015580-mRNA-1:exon:8687;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25147809 | 25147938 | 25147809 | ID=Msa0015580-mRNA-1:exon:8686;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25148119 | 25148190 | 25148119 | ID=Msa0015580-mRNA-1:exon:8685;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25148984 | 25149032 | 25148984 | ID=Msa0015580-mRNA-1:exon:8684;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25150617 | 25150959 | 25150617 | ID=Msa0015580-mRNA-1:exon:8683;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25152713 | 25153025 | 25152713 | ID=Msa0015580-mRNA-1:exon:8682;Parent=Msa0015580-mRNA-1 |
| chr1_1 | exon | 25154802 | 25155114 | 25154802 | ID=Msa0015580-mRNA-1:exon:8681;Parent=Msa0015580-mRNA-1 |
| chr1_1 | five_prime_UTR | 25155033 | 25155114 | 25155033 | ID=Msa0015580-mRNA-1:five_prime_utr;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25154802 | 25155032 | 25154802 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25152713 | 25153025 | 25152713 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25150617 | 25150959 | 25150617 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25148984 | 25149032 | 25148984 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25148119 | 25148190 | 25148119 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25147809 | 25147938 | 25147809 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25147104 | 25147224 | 25147104 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25146452 | 25146701 | 25146452 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25146140 | 25146244 | 25146140 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25145986 | 25146030 | 25145986 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25145732 | 25145884 | 25145732 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25145360 | 25145638 | 25145360 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25144807 | 25144943 | 25144807 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | CDS | 25144592 | 25144682 | 25144592 | ID=Msa0015580-mRNA-1:cds;Parent=Msa0015580-mRNA-1 |
| chr1_1 | three_prime_UTR | 25144311 | 25144591 | 25144311 | ID=Msa0015580-mRNA-1:three_prime_utr;Parent=Msa0015580-mRNA-1 |
| chr1_1 | three_prime_UTR | 25144180 | 25144213 | 25144180 | ID=Msa0015580-mRNA-1:three_prime_utr;Parent=Msa0015580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
