AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127910 MtrunA17_Chr7g0271151 99.762 420 1 0 1 420 1 420 0.0 858
Msa1127910 MtrunA17_Chr3g0126081 35.955 267 148 4 20 265 53 317 9.72e-42 154
Msa1127910 MtrunA17_Chr2g0300991 34.409 279 162 4 20 279 31 307 3.46e-40 148
Msa1127910 MtrunA17_Chr3g0146011 34.201 269 151 5 35 277 38 306 2.63e-36 139
Msa1127910 MtrunA17_Chr2g0281261 29.670 273 168 5 15 271 18 282 4.08e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127910 AT3G05940.1 77.566 419 93 1 1 418 1 419 0.0 671
Msa1127910 AT5G26740.2 75.592 422 101 2 1 420 1 422 0.0 637
Msa1127910 AT5G26740.3 75.592 422 101 2 1 420 1 422 0.0 637
Msa1127910 AT5G26740.1 75.592 422 101 2 1 420 1 422 0.0 637
Msa1127910 AT1G77220.1 36.431 269 152 3 20 269 53 321 9.27e-43 157
Msa1127910 AT4G38360.2 34.520 281 161 5 20 277 31 311 1.41e-41 153
Msa1127910 AT1G23070.1 35.018 277 150 5 15 269 23 291 2.74e-37 140
Msa1127910 AT1G77220.2 33.333 273 163 3 17 270 50 322 5.77e-37 138
Msa1127910 AT4G38360.1 32.812 256 151 3 18 252 29 284 4.41e-34 129
Msa1127910 AT4G21570.1 31.228 285 162 9 12 273 12 285 2.78e-29 116
Msa1127910 AT1G11200.1 29.749 279 174 5 15 278 19 290 8.88e-29 114
Msa1127910 AT4G21570.2 29.114 316 158 11 12 273 12 315 1.70e-23 100

Find 144 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTGTAACAACAACTAAAA+TGG 0.171683 7_3:-79608534 None:intergenic
TCTGCTGCAGGAACTTCTTC+TGG 0.174386 7_3:-79610673 None:intergenic
GATCTCAATCCTCACCAATT+AGG 0.203117 7_3:+79606515 Msa1127910:five_prime_UTR
ACCAATTAGGGTTGAGATAA+TGG 0.231192 7_3:+79606528 Msa1127910:exon
CCCATTATCTCAACCCTAAT+TGG 0.247149 7_3:-79606529 None:intergenic
TTTCTCACATTATCCATCTC+TGG 0.262507 7_3:-79610448 None:intergenic
TTGCTTTCCTCCTATACCTT+TGG 0.282986 7_3:+79608230 Msa1127910:CDS
GATCTTCTCGGATCTGATTC+TGG 0.285469 7_3:+79606470 Msa1127910:five_prime_UTR
CTGTTGTATTCCTTACTTAC+TGG 0.302664 7_3:+79608741 Msa1127910:CDS
AGCGTGGTTTCTTACATTCC+TGG 0.311164 7_3:+79610822 Msa1127910:three_prime_UTR
AGTAGTACTCCCTCAAATTC+TGG 0.343585 7_3:+79610532 Msa1127910:CDS
CCAATTAGGGTTGAGATAAT+GGG 0.345820 7_3:+79606529 Msa1127910:exon
ATCTCAATCCTCACCAATTA+GGG 0.346136 7_3:+79606516 Msa1127910:five_prime_UTR
CTAGCATGGGTTGGTGGTCC+TGG 0.350385 7_3:+79608147 Msa1127910:CDS
GCTCCAGCATATTCTTTGTA+TGG 0.352134 7_3:-79610117 None:intergenic
TCCTGTCACTTTGTCTAGCA+TGG 0.352706 7_3:+79608133 Msa1127910:CDS
AATCTGCTTAAATCCTTTCC+AGG 0.358482 7_3:-79610840 None:intergenic
CACCGTCGGTGCAATCGCTT+TGG 0.369605 7_3:+79606594 Msa1127910:CDS
ACAATAATGGCGACTGTTGT+TGG 0.369789 7_3:-79606408 None:intergenic
CACACACAGACACACACGTT+TGG 0.371768 7_3:+79606254 Msa1127910:five_prime_UTR
TTCTTTCTTGCTGCAAAGTC+GGG 0.373340 7_3:+79610000 Msa1127910:CDS
ATATGGTATGGACGCAGAAT+TGG 0.374420 7_3:-79610614 None:intergenic
AGGAACTTCTTCTGGGTAAC+TGG 0.377025 7_3:-79610665 None:intergenic
ACTTTATGATAATAAACTTT+GGG 0.378211 7_3:-79608718 None:intergenic
TCCATGCATTATGTAGAGTT+GGG 0.380167 7_3:+79611105 Msa1127910:three_prime_UTR
CAGCAGATAAAGCCGGTCTT+AGG 0.392911 7_3:+79610689 Msa1127910:CDS
CGTGGTTTGACCGCTAGCCT+TGG 0.393123 7_3:+79610156 Msa1127910:CDS
TTCTCACATTATCCATCTCT+GGG 0.397889 7_3:-79610447 None:intergenic
TACAGATAACTTACACTTCA+CGG 0.401405 7_3:-79607280 None:intergenic
GACTTTATGATAATAAACTT+TGG 0.402571 7_3:-79608719 None:intergenic
TTGTTATAAGTTTGAGTGGT+CGG 0.403312 7_3:+79608175 Msa1127910:CDS
AGGGAATGGAGGCTGACAAC+GGG 0.404069 7_3:-79610904 None:intergenic
TATCTACAATTGCACATAAG+TGG 0.407887 7_3:-79610998 None:intergenic
GAAGAAGAAAGAAACAATAA+TGG 0.411106 7_3:-79606421 None:intergenic
CTCGGATCTGATTCTGGCTA+GGG 0.413980 7_3:+79606476 Msa1127910:five_prime_UTR
ACACACAGACACACACGTTT+GGG 0.417249 7_3:+79606255 Msa1127910:five_prime_UTR
TTCCATGCATTATGTAGAGT+TGG 0.420040 7_3:+79611104 Msa1127910:three_prime_UTR
GCATCAGAGTTTGAAGCATC+AGG 0.427306 7_3:-79610562 None:intergenic
CTGTTTCAGCTATGAAGCTT+GGG 0.427514 7_3:+79608098 Msa1127910:intron
ACGGTCCATGTTATTTGTCT+TGG 0.431237 7_3:+79610937 Msa1127910:three_prime_UTR
GTTCTTTCTTGCTGCAAAGT+CGG 0.434663 7_3:+79609999 Msa1127910:CDS
ACTTACCCATCCAAAGGTAT+AGG 0.437456 7_3:-79608240 None:intergenic
AAATTACCTGCCAGTAAGTA+AGG 0.437928 7_3:-79608751 None:intergenic
ATGGCGACTGTTGTTGGCTT+CGG 0.438083 7_3:-79606402 None:intergenic
CCTGTCACTTTGTCTAGCAT+GGG 0.441185 7_3:+79608134 Msa1127910:CDS
GTGGTTTGACCGCTAGCCTT+GGG 0.442097 7_3:+79610157 Msa1127910:CDS
CATTCAGAGCTAGGTTGGTT+GGG 0.442787 7_3:+79610726 Msa1127910:three_prime_UTR
AGTGTAACAACAACTAAAAT+GGG 0.443292 7_3:-79608533 None:intergenic
CTGCTGCAGGAACTTCTTCT+GGG 0.444198 7_3:-79610672 None:intergenic
ATGTAGAGTTGGGTTCATAT+TGG 0.444490 7_3:+79611115 Msa1127910:three_prime_UTR
TCTATCATATTCGATCTTCT+CGG 0.448267 7_3:+79606458 Msa1127910:five_prime_UTR
TCAATAAGTGTCAAATCATA+TGG 0.449032 7_3:-79610631 None:intergenic
AGATACAAGTATGACTGCTT+TGG 0.453832 7_3:-79608599 None:intergenic
GAATATGCTGGAGCTAATAT+AGG 0.458813 7_3:+79610126 Msa1127910:CDS
TTTCCTCCTATACCTTTGGA+TGG 0.458821 7_3:+79608234 Msa1127910:CDS
ACTGTTTCAGCTATGAAGCT+TGG 0.464786 7_3:+79608097 Msa1127910:intron
TTCTTTACAACCACAGTGAA+GGG 0.466359 7_3:+79610377 Msa1127910:CDS
TGTTATAAGTTTGAGTGGTC+GGG 0.467257 7_3:+79608176 Msa1127910:CDS
TCTGAAAACCGAAAAGTAGA+AGG 0.467346 7_3:+79606297 Msa1127910:five_prime_UTR
TCTCGGATCTGATTCTGGCT+AGG 0.468110 7_3:+79606475 Msa1127910:five_prime_UTR
CATATTGTAATTGTCTCCGT+TGG 0.470280 7_3:+79610964 Msa1127910:three_prime_UTR
CTTTGTCTAGCATGGGTTGG+TGG 0.473508 7_3:+79608141 Msa1127910:CDS
ACACTTATTCTTTACGCTAA+GGG 0.475471 7_3:+79608551 Msa1127910:CDS
AACTTTGGGACTGGATTGAA+TGG 0.476786 7_3:-79608704 None:intergenic
TGATTTGACACTTATTGACT+TGG 0.478189 7_3:+79610636 Msa1127910:CDS
TACACTTATTCTTTACGCTA+AGG 0.478364 7_3:+79608550 Msa1127910:CDS
ACATTCAGAGCTAGGTTGGT+TGG 0.481284 7_3:+79610725 Msa1127910:three_prime_UTR
ATGATAATAAACTTTGGGAC+TGG 0.490038 7_3:-79608713 None:intergenic
CAGTCAAATTTCTTGAGTAT+CGG 0.493051 7_3:-79611059 None:intergenic
AAGTGTCAAATCATATGGTA+TGG 0.493986 7_3:-79610626 None:intergenic
TTATCCATCTCTGGGCCAAT+CGG 0.496708 7_3:-79610439 None:intergenic
AAGCAGCTTCGTCAGCATCC+TGG 0.498366 7_3:-79610029 None:intergenic
TAGGTTCAGTATAATTAAGA+AGG 0.501333 7_3:-79606639 None:intergenic
TTCCTCCTATACCTTTGGAT+GGG 0.504704 7_3:+79608235 Msa1127910:CDS
AAACTTATAACAACTGATCC+AGG 0.504735 7_3:-79608165 None:intergenic
TCACGAACGTTTGTTCCGAT+TGG 0.505852 7_3:+79610424 Msa1127910:CDS
TGTATTCCTTACTTACTGGC+AGG 0.506772 7_3:+79608745 Msa1127910:CDS
AGGCAGTGAACCAGAATTTG+AGG 0.509018 7_3:-79610542 None:intergenic
TCACTTTGTCTAGCATGGGT+TGG 0.514179 7_3:+79608138 Msa1127910:CDS
TGCAAAGTCGGGATTCATCC+AGG 0.517372 7_3:+79610011 Msa1127910:CDS
CACTTATTCTTTACGCTAAG+GGG 0.518846 7_3:+79608552 Msa1127910:CDS
AACCACAGTGAAGGGGAAGA+AGG 0.518899 7_3:+79610385 Msa1127910:CDS
ACAATGAAGCGTTGATAAGT+AGG 0.519462 7_3:-79606658 None:intergenic
TTGAAAGCCGCGGTAAAACA+AGG 0.520223 7_3:-79607241 None:intergenic
TTTCCATACAAAGAATATGC+TGG 0.525305 7_3:+79610114 Msa1127910:CDS
GATAAGGAACATTCAGAGCT+AGG 0.526347 7_3:+79610717 Msa1127910:three_prime_UTR
AGACCGGCTTTATCTGCTGC+AGG 0.526348 7_3:-79610685 None:intergenic
TTCATACGTAAGTGCAAGCA+AGG 0.532037 7_3:+79608485 Msa1127910:CDS
TTACGCTAAGGGGAAATACA+AGG 0.532724 7_3:+79608562 Msa1127910:CDS
CGTGTGTGTCTGTGTGTGTG+TGG 0.533924 7_3:-79606249 None:intergenic
AAGAAGGAACAAGGAAGTAC+AGG 0.535851 7_3:+79610401 Msa1127910:CDS
GGTTTCTTACATTCCTGGAA+AGG 0.536167 7_3:+79610827 Msa1127910:three_prime_UTR
AAGGCTAGCGGTCAAACCAC+GGG 0.540121 7_3:-79610154 None:intergenic
AGCCAAAGCGATTGCACCGA+CGG 0.545111 7_3:-79606596 None:intergenic
CCTTATCGATCACCTAAGAC+CGG 0.547244 7_3:-79610701 None:intergenic
TGTATGGAAATGCATAAAAG+TGG 0.547274 7_3:-79610101 None:intergenic
TGTTGTTGGCTTCGGTAACA+AGG 0.548815 7_3:-79606394 None:intergenic
GGCAGTGAACCAGAATTTGA+GGG 0.549362 7_3:-79610541 None:intergenic
AGGAACATTCAGAGCTAGGT+TGG 0.553513 7_3:+79610721 Msa1127910:three_prime_UTR
TCACCTGGTGGACTGTATCA+TGG 0.557444 7_3:-79610206 None:intergenic
ACGTTTGGGTTCTCGCGTTG+TGG 0.561799 7_3:+79606269 Msa1127910:five_prime_UTR
AATCAAATCTTCCTTGCTTG+TGG 0.562585 7_3:+79610585 Msa1127910:CDS
GTTCTTTACAACCACAGTGA+AGG 0.564984 7_3:+79610376 Msa1127910:CDS
CAAGGCTAGCGGTCAAACCA+CGG 0.567441 7_3:-79610155 None:intergenic
TACCCATCCAAAGGTATAGG+AGG 0.567651 7_3:-79608237 None:intergenic
TGTTCCGATTGGCCCAGAGA+TGG 0.569333 7_3:+79610435 Msa1127910:CDS
CTAAGGGGAAATACAAGGAT+GGG 0.571154 7_3:+79608567 Msa1127910:CDS
TCAGTTGTTATAAGTTTGAG+TGG 0.572193 7_3:+79608171 Msa1127910:CDS
TGAGATGCTTATTGCTGCAG+TGG 0.573649 7_3:+79610077 Msa1127910:CDS
TTTGGGTTCTCGCGTTGTGG+TGG 0.578721 7_3:+79606272 Msa1127910:five_prime_UTR
ACCCAACTCTACATAATGCA+TGG 0.581229 7_3:-79611106 None:intergenic
GTTCCTGCAGCAGATAAAGC+CGG 0.587118 7_3:+79610682 Msa1127910:CDS
GCTAAGGGGAAATACAAGGA+TGG 0.587400 7_3:+79608566 Msa1127910:CDS
ACAATTGCACATAAGTGGAT+AGG 0.588419 7_3:-79610993 None:intergenic
CCATTCCCTAGCAAACAAAA+CGG 0.593936 7_3:+79610918 Msa1127910:three_prime_UTR
CCCATGCTAGACAAAGTGAC+AGG 0.598216 7_3:-79608134 None:intergenic
TAGGGAATGGAGGCTGACAA+CGG 0.599470 7_3:-79610905 None:intergenic
CAATTAGGGTTGAGATAATG+GGG 0.600956 7_3:+79606530 Msa1127910:exon
TATCTCAACCCTAATTGGTG+AGG 0.604064 7_3:-79606524 None:intergenic
ACGACTATTAATGATTCTGA+TGG 0.605121 7_3:+79606207 Msa1127910:five_prime_UTR
GAGATGCTTATTGCTGCAGT+GGG 0.611426 7_3:+79610078 Msa1127910:CDS
CTATACATTCTCATATACAA+TGG 0.615648 7_3:+79608631 Msa1127910:CDS
GTGAAGGGGAAGAAGGAACA+AGG 0.618383 7_3:+79610392 Msa1127910:CDS
TATGCTGGAGCTAATATAGG+TGG 0.621058 7_3:+79610129 Msa1127910:CDS
ATTGGACACATCCACAAGCA+AGG 0.624740 7_3:-79610596 None:intergenic
AGAACATAATCATGATACGT+TGG 0.630961 7_3:-79610358 None:intergenic
CAAAGCATGCCCAAGGCTAG+CGG 0.631165 7_3:-79610166 None:intergenic
GTGTGTGTCTGTGTGTGTGT+GGG 0.632118 7_3:-79606248 None:intergenic
TTCCTTCTTCCCCTTCACTG+TGG 0.632503 7_3:-79610387 None:intergenic
TTACCATGATACAGTCCACC+AGG 0.635265 7_3:+79610203 Msa1127910:CDS
ATGCAAACTTACCCATCCAA+AGG 0.637240 7_3:-79608246 None:intergenic
TCTTTACAACCACAGTGAAG+GGG 0.644033 7_3:+79610378 Msa1127910:CDS
TAAGCATATAACTGGAAACA+AGG 0.644662 7_3:+79610474 Msa1127910:CDS
TCAACTTCAAAGCATGCCCA+AGG 0.650573 7_3:-79610173 None:intergenic
GAAGACCAAGACAAATAACA+TGG 0.664001 7_3:-79610942 None:intergenic
TGAAAGCCGCGGTAAAACAA+GGG 0.670598 7_3:-79607240 None:intergenic
GGGAATGGAGGCTGACAACG+GGG 0.674557 7_3:-79610903 None:intergenic
AGTGGATAGGACACAACCAA+CGG 0.679096 7_3:-79610980 None:intergenic
CAAGTCATCAGACAGACTGA+CGG 0.684226 7_3:-79608207 None:intergenic
TTAAAGTAGATTGAAAGCCG+CGG 0.686396 7_3:-79607251 None:intergenic
TCATACGTAAGTGCAAGCAA+GGG 0.690075 7_3:+79608486 Msa1127910:CDS
GCTAATATAGGTGGATCCCG+TGG 0.715148 7_3:+79610138 Msa1127910:CDS
AGAGAACTATGATTCAAGCG+TGG 0.719846 7_3:+79610806 Msa1127910:three_prime_UTR
AATTAGGGTTGAGATAATGG+GGG 0.759621 7_3:+79606531 Msa1127910:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTATAATTTCAAATTC+AGG - chr7_3:79608023-79608042 None:intergenic 10.0%
!!! TTTTTAAAAAAAACTTTAAG+AGG + chr7_3:79608386-79608405 Msa1127910:intron 10.0%
!! AGTAAGTAAAAAAAAAAAAA+AGG - chr7_3:79609468-79609487 None:intergenic 10.0%
!!! AAAGTAGTAATTTTCAATTT+TGG + chr7_3:79606349-79606368 Msa1127910:five_prime_UTR 15.0%
!!! AAGTAGTAATTTTCAATTTT+GGG + chr7_3:79606350-79606369 Msa1127910:five_prime_UTR 15.0%
!! TATATCTAAAAAATTGTCAT+TGG + chr7_3:79607643-79607662 Msa1127910:intron 15.0%
!! ATATCTAAAAAATTGTCATT+GGG + chr7_3:79607644-79607663 Msa1127910:intron 15.0%
!!! ATGTTTATTTTTCTAATGAT+AGG + chr7_3:79607669-79607688 Msa1127910:intron 15.0%
!! ATGTTAAAATAGTAAATGAA+GGG - chr7_3:79607765-79607784 None:intergenic 15.0%
!! AATGTTAAAATAGTAAATGA+AGG - chr7_3:79607766-79607785 None:intergenic 15.0%
!! ACTTTATGATAATAAACTTT+GGG - chr7_3:79608721-79608740 None:intergenic 15.0%
!!! TTATACATCTTTCATTTTTA+TGG + chr7_3:79608774-79608793 Msa1127910:intron 15.0%
!!! TCAAATTAATTTTTTGAAGA+TGG + chr7_3:79609873-79609892 Msa1127910:intron 15.0%
!!! TTTTTTGTTTTTCATTTCTT+AGG + chr7_3:79609969-79609988 Msa1127910:intron 15.0%
!!! TTTTTGTTTTTCATTTCTTA+GGG + chr7_3:79609970-79609989 Msa1127910:intron 15.0%
!! ATATAGAAAGTTGTAAATTG+TGG + chr7_3:79606978-79606997 Msa1127910:intron 20.0%
!! TATCTAAAAAATTGTCATTG+GGG + chr7_3:79607645-79607664 Msa1127910:intron 20.0%
!! TGTTAAAATAGTAAATGAAG+GGG - chr7_3:79607764-79607783 None:intergenic 20.0%
!! GACTTTATGATAATAAACTT+TGG - chr7_3:79608722-79608741 None:intergenic 20.0%
!!! TGTTTTATGTTACCATAAAA+AGG + chr7_3:79608888-79608907 Msa1127910:intron 20.0%
!! TGAGAATAACATTATAAGAT+GGG - chr7_3:79609206-79609225 None:intergenic 20.0%
!! TTGAGAATAACATTATAAGA+TGG - chr7_3:79609207-79609226 None:intergenic 20.0%
!!! AAATTCTAAGCTTGTTTATA+TGG + chr7_3:79609753-79609772 Msa1127910:intron 20.0%
!! TATGGTCATAGTAATAAAAA+AGG + chr7_3:79609771-79609790 Msa1127910:intron 20.0%
!! ATTATTTATTTGCATGCAAA+AGG + chr7_3:79609826-79609845 Msa1127910:intron 20.0%
!!! TTTTGTTTTTCATTTCTTAG+GGG + chr7_3:79609971-79609990 Msa1127910:intron 20.0%
!! AGAAAAAATAAGCATATAAC+TGG + chr7_3:79610466-79610485 Msa1127910:CDS 20.0%
!! TAGTAAAATAAAAACGTCAA+TGG - chr7_3:79611155-79611174 None:intergenic 20.0%
! GAAGAAGAAAGAAACAATAA+TGG - chr7_3:79606424-79606443 None:intergenic 25.0%
! TAGGTTCAGTATAATTAAGA+AGG - chr7_3:79606642-79606661 None:intergenic 25.0%
! TACATAAACAAAGAAAAACG+TGG - chr7_3:79606746-79606765 None:intergenic 25.0%
!! TCATTGGTGTATTTGTTAAT+TGG + chr7_3:79606787-79606806 Msa1127910:intron 25.0%
!!! TACATTCATTGTTTTTCACT+TGG + chr7_3:79606886-79606905 Msa1127910:intron 25.0%
! AACCAAATAGGTAAAACAAT+GGG - chr7_3:79607033-79607052 None:intergenic 25.0%
! GAAAATGAAGAAGAAATCAA+AGG - chr7_3:79607081-79607100 None:intergenic 25.0%
!!! AAACTTTAATTTTCTCTGAC+AGG + chr7_3:79607193-79607212 Msa1127910:intron 25.0%
!! ACAACATCATGATTGATTTA+AGG + chr7_3:79607477-79607496 Msa1127910:intron 25.0%
! TTAAAATAGTAAATGAAGGG+GGG - chr7_3:79607762-79607781 None:intergenic 25.0%
! GTTAAAATAGTAAATGAAGG+GGG - chr7_3:79607763-79607782 None:intergenic 25.0%
!! TTTGTATTTTCTTTTGCTAG+AGG + chr7_3:79607796-79607815 Msa1127910:intron 25.0%
!! TTGCATCTGATTCATATTTT+TGG + chr7_3:79608263-79608282 Msa1127910:intron 25.0%
!! AGGTATATATAACCATTTTC+AGG - chr7_3:79608305-79608324 None:intergenic 25.0%
! CATCTATGAAACAAATTCAA+AGG - chr7_3:79608339-79608358 None:intergenic 25.0%
!! AAAAAAAACTTTAAGAGGCT+AGG + chr7_3:79608391-79608410 Msa1127910:intron 25.0%
! AGTGTAACAACAACTAAAAT+GGG - chr7_3:79608536-79608555 None:intergenic 25.0%
! AAGTGTAACAACAACTAAAA+TGG - chr7_3:79608537-79608556 None:intergenic 25.0%
! CTATACATTCTCATATACAA+TGG + chr7_3:79608631-79608650 Msa1127910:CDS 25.0%
!! CTATGCTTTTCTCATATTTT+CGG + chr7_3:79608798-79608817 Msa1127910:intron 25.0%
!! ACATTATAAGATGGGATTTT+TGG - chr7_3:79609198-79609217 None:intergenic 25.0%
!!! ACTGTTTTTTCTTATACACA+AGG + chr7_3:79609485-79609504 Msa1127910:intron 25.0%
!!! CTGTTTTTTCTTATACACAA+GGG + chr7_3:79609486-79609505 Msa1127910:intron 25.0%
! AATCAATTATGGAGTAAAGA+TGG - chr7_3:79609600-79609619 None:intergenic 25.0%
! TCTTTACTCCATAATTGATT+TGG + chr7_3:79609600-79609619 Msa1127910:intron 25.0%
! AAACCTTGAGAAATAGAAAA+CGG - chr7_3:79609716-79609735 None:intergenic 25.0%
! TTTGTTAATTGCTTTGTAGT+GGG + chr7_3:79609849-79609868 Msa1127910:intron 25.0%
! TAACCAATAAGCTAACATAT+AGG - chr7_3:79609905-79609924 None:intergenic 25.0%
!!! TTTGTTTTTCATTTCTTAGG+GGG + chr7_3:79609972-79609991 Msa1127910:intron 25.0%
! ACACAAGGAACTATAAAATA+TGG - chr7_3:79610262-79610281 None:intergenic 25.0%
! AGTAGTATCAGGTTATTAAT+TGG - chr7_3:79610318-79610337 None:intergenic 25.0%
! TCAATAAGTGTCAAATCATA+TGG - chr7_3:79610634-79610653 None:intergenic 25.0%
!!! TAAATGTTTTTGCTATAGAG+AGG + chr7_3:79610749-79610768 Msa1127910:three_prime_UTR 25.0%
ACGACTATTAATGATTCTGA+TGG + chr7_3:79606207-79606226 Msa1127910:five_prime_UTR 30.0%
TCTATCATATTCGATCTTCT+CGG + chr7_3:79606458-79606477 Msa1127910:five_prime_UTR 30.0%
GCGATAACATAGAAAAAAAG+CGG - chr7_3:79606565-79606584 None:intergenic 30.0%
AAGAAGAGAAATTAACTGAC+CGG - chr7_3:79606703-79606722 None:intergenic 30.0%
TATGTATTGTATTCCCTACT+AGG + chr7_3:79606760-79606779 Msa1127910:intron 30.0%
TTTCAACAGTGACACATTTA+GGG - chr7_3:79606858-79606877 None:intergenic 30.0%
ATTTCAACAGTGACACATTT+AGG - chr7_3:79606859-79606878 None:intergenic 30.0%
!! TTGTTTTTCACTTGGTTGAA+AGG + chr7_3:79606894-79606913 Msa1127910:intron 30.0%
! TGTTTTTCACTTGGTTGAAA+GGG + chr7_3:79606895-79606914 Msa1127910:intron 30.0%
!! TACCCATTGTTTTACCTATT+TGG + chr7_3:79607028-79607047 Msa1127910:intron 30.0%
GAACCAAATAGGTAAAACAA+TGG - chr7_3:79607034-79607053 None:intergenic 30.0%
AAGTGCTCTTGAAAATCTAA+TGG + chr7_3:79607103-79607122 Msa1127910:intron 30.0%
AGTGCTCTTGAAAATCTAAT+GGG + chr7_3:79607104-79607123 Msa1127910:intron 30.0%
TACAGATAACTTACACTTCA+CGG - chr7_3:79607283-79607302 None:intergenic 30.0%
CTAAATAACAGCAACAACAA+AGG - chr7_3:79607329-79607348 None:intergenic 30.0%
CAGGGAGGAAAAAAAATATA+CGG - chr7_3:79607366-79607385 None:intergenic 30.0%
!! AACTTGTTGGTTGTGATTAA+GGG + chr7_3:79607397-79607416 Msa1127910:intron 30.0%
AGCTATGTATGATATATCAC+TGG - chr7_3:79607437-79607456 None:intergenic 30.0%
! CATGATTGATTTAAGGTTCT+AGG + chr7_3:79607484-79607503 Msa1127910:intron 30.0%
CTTCATCGTATACATATCAA+GGG - chr7_3:79607531-79607550 None:intergenic 30.0%
ACTTCATCGTATACATATCA+AGG - chr7_3:79607532-79607551 None:intergenic 30.0%
ATACGATGAAGTCTCTATTA+TGG + chr7_3:79607540-79607559 Msa1127910:intron 30.0%
AGAATAACCAATGAACTAGA+AGG - chr7_3:79607617-79607636 None:intergenic 30.0%
! CTAGTTCATTGGTTATTCTT+TGG + chr7_3:79607618-79607637 Msa1127910:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + chr7_3:79607854-79607873 Msa1127910:intron 30.0%
GTTGGATCAAAATATGACTA+TGG + chr7_3:79607872-79607891 Msa1127910:intron 30.0%
AAACAGTTGAGAAGAGAAAA+TGG - chr7_3:79608084-79608103 None:intergenic 30.0%
AAACTTATAACAACTGATCC+AGG - chr7_3:79608168-79608187 None:intergenic 30.0%
TCAGTTGTTATAAGTTTGAG+TGG + chr7_3:79608171-79608190 Msa1127910:CDS 30.0%
TTGTTATAAGTTTGAGTGGT+CGG + chr7_3:79608175-79608194 Msa1127910:CDS 30.0%
AAAGTGTATTTCCATACAGT+GGG - chr7_3:79608430-79608449 None:intergenic 30.0%
! AAAAGTGTATTTCCATACAG+TGG - chr7_3:79608431-79608450 None:intergenic 30.0%
!! ACCTCTAAAACTTCTATTGT+AGG + chr7_3:79608459-79608478 Msa1127910:intron 30.0%
TACACTTATTCTTTACGCTA+AGG + chr7_3:79608550-79608569 Msa1127910:CDS 30.0%
ACACTTATTCTTTACGCTAA+GGG + chr7_3:79608551-79608570 Msa1127910:CDS 30.0%
!! ATGATAATAAACTTTGGGAC+TGG - chr7_3:79608716-79608735 None:intergenic 30.0%
! TGACATCAAGATCCTTTTTA+TGG - chr7_3:79608903-79608922 None:intergenic 30.0%
!! AAGATGATCAGTAACTTGTT+TGG + chr7_3:79608968-79608987 Msa1127910:intron 30.0%
!! ATCAGTAACTTGTTTGGATT+CGG + chr7_3:79608974-79608993 Msa1127910:intron 30.0%
TTCTAACACTACTTGGATAA+GGG - chr7_3:79609033-79609052 None:intergenic 30.0%
ATTCTAACACTACTTGGATA+AGG - chr7_3:79609034-79609053 None:intergenic 30.0%
CAATGAATTCTAACACTACT+TGG - chr7_3:79609040-79609059 None:intergenic 30.0%
ATTCATTGCACGTTATTGTT+AGG + chr7_3:79609052-79609071 Msa1127910:intron 30.0%
AAGCTTGAATGTTGAAAAGA+CGG - chr7_3:79609172-79609191 None:intergenic 30.0%
! TTATTCTCAAGTTGCTATCA+GGG + chr7_3:79609217-79609236 Msa1127910:intron 30.0%
GGATAATCAAACAACACAAA+TGG - chr7_3:79609579-79609598 None:intergenic 30.0%
TTGGATGACCAAATCAATTA+TGG - chr7_3:79609611-79609630 None:intergenic 30.0%
! TTTTCTCTGTATGCTAAACT+TGG - chr7_3:79609630-79609649 None:intergenic 30.0%
TGATGACTTTCACAAACAAA+AGG - chr7_3:79609668-79609687 None:intergenic 30.0%
AGGTAAGTTAAAAACGTAGT+TGG - chr7_3:79609692-79609711 None:intergenic 30.0%
AACCTTGAGAAATAGAAAAC+GGG - chr7_3:79609715-79609734 None:intergenic 30.0%
AAAGGAAGTTGACATTCATA+TGG + chr7_3:79609789-79609808 Msa1127910:intron 30.0%
! GTTTGTTAATTGCTTTGTAG+TGG + chr7_3:79609848-79609867 Msa1127910:intron 30.0%
! TAGCCTATATGTTAGCTTAT+TGG + chr7_3:79609899-79609918 Msa1127910:intron 30.0%
!!! GCATTTGCTTTTTACACTAA+AGG + chr7_3:79609931-79609950 Msa1127910:intron 30.0%
TGTATGGAAATGCATAAAAG+TGG - chr7_3:79610104-79610123 None:intergenic 30.0%
TTTCCATACAAAGAATATGC+TGG + chr7_3:79610114-79610133 Msa1127910:CDS 30.0%
GGAAGAAGAAGAAAAAACAA+AGG - chr7_3:79610297-79610316 None:intergenic 30.0%
AGAACATAATCATGATACGT+TGG - chr7_3:79610361-79610380 None:intergenic 30.0%
TAAGCATATAACTGGAAACA+AGG + chr7_3:79610474-79610493 Msa1127910:CDS 30.0%
AAGTGTCAAATCATATGGTA+TGG - chr7_3:79610629-79610648 None:intergenic 30.0%
! TGATTTGACACTTATTGACT+TGG + chr7_3:79610636-79610655 Msa1127910:CDS 30.0%
!! TTTTTGCTATAGAGAGGATA+TGG + chr7_3:79610755-79610774 Msa1127910:three_prime_UTR 30.0%
!! TTTTGCTATAGAGAGGATAT+GGG + chr7_3:79610756-79610775 Msa1127910:three_prime_UTR 30.0%
! GCATCTAACAGTTTTTCTTT+TGG + chr7_3:79610778-79610797 Msa1127910:three_prime_UTR 30.0%
!! TAACAGTTTTTCTTTTGGCT+TGG + chr7_3:79610783-79610802 Msa1127910:three_prime_UTR 30.0%
TATCTACAATTGCACATAAG+TGG - chr7_3:79611001-79611020 None:intergenic 30.0%
CAGTCAAATTTCTTGAGTAT+CGG - chr7_3:79611062-79611081 None:intergenic 30.0%
TCTGAAAACCGAAAAGTAGA+AGG + chr7_3:79606297-79606316 Msa1127910:five_prime_UTR 35.0%
!! TTTCAATTTTGGGTCATCGT+TGG + chr7_3:79606360-79606379 Msa1127910:five_prime_UTR 35.0%
ATCTCAATCCTCACCAATTA+GGG + chr7_3:79606516-79606535 Msa1127910:five_prime_UTR 35.0%
ACCAATTAGGGTTGAGATAA+TGG + chr7_3:79606528-79606547 Msa1127910:exon 35.0%
CCAATTAGGGTTGAGATAAT+GGG + chr7_3:79606529-79606548 Msa1127910:exon 35.0%
CAATTAGGGTTGAGATAATG+GGG + chr7_3:79606530-79606549 Msa1127910:exon 35.0%
! AATTAGGGTTGAGATAATGG+GGG + chr7_3:79606531-79606550 Msa1127910:exon 35.0%
!! ACAATGAAGCGTTGATAAGT+AGG - chr7_3:79606661-79606680 None:intergenic 35.0%
ACGTGGATAACAAACATTGA+AGG - chr7_3:79606729-79606748 None:intergenic 35.0%
! TTCCCTACTAGGTTTTTCAT+TGG + chr7_3:79606771-79606790 Msa1127910:intron 35.0%
CACCAATGAAAAACCTAGTA+GGG - chr7_3:79606776-79606795 None:intergenic 35.0%
ACACCAATGAAAAACCTAGT+AGG - chr7_3:79606777-79606796 None:intergenic 35.0%
TTGAACTTGGAAGGTCAAAA+TGG + chr7_3:79606920-79606939 Msa1127910:intron 35.0%
TGAACTTGGAAGGTCAAAAT+GGG + chr7_3:79606921-79606940 Msa1127910:intron 35.0%
TTAAAGTAGATTGAAAGCCG+CGG - chr7_3:79607254-79607273 None:intergenic 35.0%
!!! TTTTTTTCCTCCCTGTTTCA+TGG + chr7_3:79607371-79607390 Msa1127910:intron 35.0%
! ACAAGTTGAACCATGAAACA+GGG - chr7_3:79607384-79607403 None:intergenic 35.0%
! AACAAGTTGAACCATGAAAC+AGG - chr7_3:79607385-79607404 None:intergenic 35.0%
TGTTTCATGGTTCAACTTGT+TGG + chr7_3:79607384-79607403 Msa1127910:intron 35.0%
!! CAACTTGTTGGTTGTGATTA+AGG + chr7_3:79607396-79607415 Msa1127910:intron 35.0%
!! ATCTAGTCCTTCTAGTTCAT+TGG + chr7_3:79607607-79607626 Msa1127910:intron 35.0%
! TTTTCTTTTGCTAGAGGTAG+AGG + chr7_3:79607802-79607821 Msa1127910:intron 35.0%
TGTTATAAGTTTGAGTGGTC+GGG + chr7_3:79608176-79608195 Msa1127910:CDS 35.0%
AAAGTTGTCATGCCTGAAAA+TGG + chr7_3:79608290-79608309 Msa1127910:intron 35.0%
!! GCCTACAATAGAAGTTTTAG+AGG - chr7_3:79608463-79608482 None:intergenic 35.0%
CACTTATTCTTTACGCTAAG+GGG + chr7_3:79608552-79608571 Msa1127910:CDS 35.0%
AGATACAAGTATGACTGCTT+TGG - chr7_3:79608602-79608621 None:intergenic 35.0%
CTGTTGTATTCCTTACTTAC+TGG + chr7_3:79608741-79608760 Msa1127910:CDS 35.0%
AAATTACCTGCCAGTAAGTA+AGG - chr7_3:79608754-79608773 None:intergenic 35.0%
TATTGTGATGCTAGATGAAC+AGG + chr7_3:79608840-79608859 Msa1127910:intron 35.0%
TGCACGTTATTGTTAGGAAT+TGG + chr7_3:79609058-79609077 Msa1127910:intron 35.0%
! GTTATTCTCAAGTTGCTATC+AGG + chr7_3:79609216-79609235 Msa1127910:intron 35.0%
TGGAAGTGAAAATGAGAAGT+GGG - chr7_3:79609253-79609272 None:intergenic 35.0%
ATGGAAGTGAAAATGAGAAG+TGG - chr7_3:79609254-79609273 None:intergenic 35.0%
AAAATAGATGTAGTGTGTGC+TGG - chr7_3:79609364-79609383 None:intergenic 35.0%
! AGCACACACTACATCTATTT+TGG + chr7_3:79609363-79609382 Msa1127910:intron 35.0%
TCCTCGTAGTTCTTTCTATT+TGG + chr7_3:79609402-79609421 Msa1127910:intron 35.0%
ACCAAATAGAAAGAACTACG+AGG - chr7_3:79609406-79609425 None:intergenic 35.0%
GTCATTGAAAGATTCAGAGT+TGG - chr7_3:79609446-79609465 None:intergenic 35.0%
CACAAACAAAAGGATCATCA+AGG - chr7_3:79609658-79609677 None:intergenic 35.0%
GAATATGCTGGAGCTAATAT+AGG + chr7_3:79610126-79610145 Msa1127910:CDS 35.0%
GTTCCTTGTGTTGAAATTTC+TGG + chr7_3:79610271-79610290 Msa1127910:intron 35.0%
CCACAAATTTGAGTAGTATC+AGG - chr7_3:79610329-79610348 None:intergenic 35.0%
CCTGATACTACTCAAATTTG+TGG + chr7_3:79610326-79610345 Msa1127910:intron 35.0%
TTCTTTACAACCACAGTGAA+GGG + chr7_3:79610377-79610396 Msa1127910:CDS 35.0%
TTCTCACATTATCCATCTCT+GGG - chr7_3:79610450-79610469 None:intergenic 35.0%
TTTCTCACATTATCCATCTC+TGG - chr7_3:79610451-79610470 None:intergenic 35.0%
AATCAAATCTTCCTTGCTTG+TGG + chr7_3:79610585-79610604 Msa1127910:CDS 35.0%
AATCTGCTTAAATCCTTTCC+AGG - chr7_3:79610843-79610862 None:intergenic 35.0%
GAAGACCAAGACAAATAACA+TGG - chr7_3:79610945-79610964 None:intergenic 35.0%
CATATTGTAATTGTCTCCGT+TGG + chr7_3:79610964-79610983 Msa1127910:three_prime_UTR 35.0%
ACAATTGCACATAAGTGGAT+AGG - chr7_3:79610996-79611015 None:intergenic 35.0%
TTCCATGCATTATGTAGAGT+TGG + chr7_3:79611104-79611123 Msa1127910:three_prime_UTR 35.0%
TCCATGCATTATGTAGAGTT+GGG + chr7_3:79611105-79611124 Msa1127910:three_prime_UTR 35.0%
ATGTAGAGTTGGGTTCATAT+TGG + chr7_3:79611115-79611134 Msa1127910:three_prime_UTR 35.0%
!! TTGTGCTGCCTTCTACTTTT+CGG - chr7_3:79606308-79606327 None:intergenic 40.0%
ACAATAATGGCGACTGTTGT+TGG - chr7_3:79606411-79606430 None:intergenic 40.0%
GATCTCAATCCTCACCAATT+AGG + chr7_3:79606515-79606534 Msa1127910:five_prime_UTR 40.0%
TATCTCAACCCTAATTGGTG+AGG - chr7_3:79606527-79606546 None:intergenic 40.0%
CCCATTATCTCAACCCTAAT+TGG - chr7_3:79606532-79606551 None:intergenic 40.0%
! CATTGTTCGCATCGTTTTCA+TGG + chr7_3:79606675-79606694 Msa1127910:CDS 40.0%
! ACAGTGACACATTTAGGGTT+AGG - chr7_3:79606853-79606872 None:intergenic 40.0%
!!! GGTTGAAAGGGTTTTGAACT+TGG + chr7_3:79606907-79606926 Msa1127910:intron 40.0%
!!! GAAAGGGTTTTGAACTTGGA+AGG + chr7_3:79606911-79606930 Msa1127910:intron 40.0%
GAACTTGGAAGGTCAAAATG+GGG + chr7_3:79606922-79606941 Msa1127910:intron 40.0%
AATGGGTAATTCAGTCAGTG+AGG - chr7_3:79607016-79607035 None:intergenic 40.0%
TGCACCAACAGTCTCTTATT+AGG + chr7_3:79607054-79607073 Msa1127910:intron 40.0%
AGGACCTAATAAGAGACTGT+TGG - chr7_3:79607061-79607080 None:intergenic 40.0%
TAGATAGAGTCCATGTTCGT+AGG + chr7_3:79607573-79607592 Msa1127910:intron 40.0%
CACTTCTTATCCTACGAACA+TGG - chr7_3:79607586-79607605 None:intergenic 40.0%
GTCAGGGTGAACTTAGATTA+CGG - chr7_3:79607987-79608006 None:intergenic 40.0%
AGGACAGTCAACAATTGTCA+GGG - chr7_3:79608003-79608022 None:intergenic 40.0%
ACTGTTTCAGCTATGAAGCT+TGG + chr7_3:79608097-79608116 Msa1127910:intron 40.0%
CTGTTTCAGCTATGAAGCTT+GGG + chr7_3:79608098-79608117 Msa1127910:intron 40.0%
TTGCTTTCCTCCTATACCTT+TGG + chr7_3:79608230-79608249 Msa1127910:CDS 40.0%
TTTCCTCCTATACCTTTGGA+TGG + chr7_3:79608234-79608253 Msa1127910:CDS 40.0%
TTCCTCCTATACCTTTGGAT+GGG + chr7_3:79608235-79608254 Msa1127910:CDS 40.0%
! ACTTACCCATCCAAAGGTAT+AGG - chr7_3:79608243-79608262 None:intergenic 40.0%
ATGCAAACTTACCCATCCAA+AGG - chr7_3:79608249-79608268 None:intergenic 40.0%
ATTCAAAGGCTCAGATCTCA+AGG - chr7_3:79608325-79608344 None:intergenic 40.0%
TTCATACGTAAGTGCAAGCA+AGG + chr7_3:79608485-79608504 Msa1127910:CDS 40.0%
TCATACGTAAGTGCAAGCAA+GGG + chr7_3:79608486-79608505 Msa1127910:CDS 40.0%
TTACGCTAAGGGGAAATACA+AGG + chr7_3:79608562-79608581 Msa1127910:CDS 40.0%
CTAAGGGGAAATACAAGGAT+GGG + chr7_3:79608567-79608586 Msa1127910:CDS 40.0%
!! TGCTCTTGCATTGTTTTACG+TGG + chr7_3:79608661-79608680 Msa1127910:CDS 40.0%
!! ATTGTTTTACGTGGCATGCA+AGG + chr7_3:79608670-79608689 Msa1127910:CDS 40.0%
!! AACTTTGGGACTGGATTGAA+TGG - chr7_3:79608707-79608726 None:intergenic 40.0%
TGTATTCCTTACTTACTGGC+AGG + chr7_3:79608745-79608764 Msa1127910:CDS 40.0%
!! TGACGGGCTAAACTATACAA+TGG - chr7_3:79609273-79609292 None:intergenic 40.0%
TTGTATAGTTTAGCCCGTCA+AGG + chr7_3:79609273-79609292 Msa1127910:intron 40.0%
AAGAACTACGAGGAATGAGA+AGG - chr7_3:79609396-79609415 None:intergenic 40.0%
!! ACAAGGGAGTACTAAACAGA+TGG + chr7_3:79609502-79609521 Msa1127910:intron 40.0%
TCAAACAACACAAATGGTGC+AGG - chr7_3:79609573-79609592 None:intergenic 40.0%
CTTGAGAAATAGAAAACGGG+AGG - chr7_3:79609712-79609731 None:intergenic 40.0%
!! CTCCCGTTTTCTATTTCTCA+AGG + chr7_3:79609710-79609729 Msa1127910:intron 40.0%
GTTCTTTCTTGCTGCAAAGT+CGG + chr7_3:79609999-79610018 Msa1127910:CDS 40.0%
TTCTTTCTTGCTGCAAAGTC+GGG + chr7_3:79610000-79610019 Msa1127910:CDS 40.0%
GCTCCAGCATATTCTTTGTA+TGG - chr7_3:79610120-79610139 None:intergenic 40.0%
TATGCTGGAGCTAATATAGG+TGG + chr7_3:79610129-79610148 Msa1127910:CDS 40.0%
CATATAAAGTGAGACTCACC+TGG - chr7_3:79610224-79610243 None:intergenic 40.0%
AGGCCAGAAATTTCAACACA+AGG - chr7_3:79610277-79610296 None:intergenic 40.0%
GTTCTTTACAACCACAGTGA+AGG + chr7_3:79610376-79610395 Msa1127910:CDS 40.0%
TCTTTACAACCACAGTGAAG+GGG + chr7_3:79610378-79610397 Msa1127910:CDS 40.0%
! AAGAAGGAACAAGGAAGTAC+AGG + chr7_3:79610401-79610420 Msa1127910:CDS 40.0%
AGTAGTACTCCCTCAAATTC+TGG + chr7_3:79610532-79610551 Msa1127910:CDS 40.0%
ATATGGTATGGACGCAGAAT+TGG - chr7_3:79610617-79610636 None:intergenic 40.0%
GATAAGGAACATTCAGAGCT+AGG + chr7_3:79610717-79610736 Msa1127910:three_prime_UTR 40.0%
AGAGAACTATGATTCAAGCG+TGG + chr7_3:79610806-79610825 Msa1127910:three_prime_UTR 40.0%
GGTTTCTTACATTCCTGGAA+AGG + chr7_3:79610827-79610846 Msa1127910:three_prime_UTR 40.0%
!! TTTTGTTTGCTAGGGAATGG+AGG - chr7_3:79610918-79610937 None:intergenic 40.0%
CCATTCCCTAGCAAACAAAA+CGG + chr7_3:79610918-79610937 Msa1127910:three_prime_UTR 40.0%
!!! ATGGACCGTTTTGTTTGCTA+GGG - chr7_3:79610926-79610945 None:intergenic 40.0%
! ACGGTCCATGTTATTTGTCT+TGG + chr7_3:79610937-79610956 Msa1127910:three_prime_UTR 40.0%
ACCCAACTCTACATAATGCA+TGG - chr7_3:79611109-79611128 None:intergenic 40.0%
ACACACAGACACACACGTTT+GGG + chr7_3:79606255-79606274 Msa1127910:five_prime_UTR 45.0%
!! TGTTGTTGGCTTCGGTAACA+AGG - chr7_3:79606397-79606416 None:intergenic 45.0%
GATCTTCTCGGATCTGATTC+TGG + chr7_3:79606470-79606489 Msa1127910:five_prime_UTR 45.0%
! ATCGCTTTCTTTTGCACCGT+CGG + chr7_3:79606580-79606599 Msa1127910:CDS 45.0%
! TCGCATCGTTTTCATGGTTC+CGG + chr7_3:79606681-79606700 Msa1127910:CDS 45.0%
CTGTTGGTGCAGAACCAAAT+AGG - chr7_3:79607045-79607064 None:intergenic 45.0%
!!! TCTTGTCCCTTGTTTTACCG+CGG + chr7_3:79607234-79607253 Msa1127910:CDS 45.0%
TGAAAGCCGCGGTAAAACAA+GGG - chr7_3:79607243-79607262 None:intergenic 45.0%
TTGAAAGCCGCGGTAAAACA+AGG - chr7_3:79607244-79607263 None:intergenic 45.0%
AGTTGAACCATGAAACAGGG+AGG - chr7_3:79607381-79607400 None:intergenic 45.0%
TTCCCACTCTTGTGATTGCA+CGG - chr7_3:79607732-79607751 None:intergenic 45.0%
! CTTATCCCACTAAGTGGGTT+CGG - chr7_3:79607917-79607936 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr7_3:79607922-79607941 None:intergenic 45.0%
CAGGACAGTCAACAATTGTC+AGG - chr7_3:79608004-79608023 None:intergenic 45.0%
!! TCCTGTCACTTTGTCTAGCA+TGG + chr7_3:79608133-79608152 Msa1127910:CDS 45.0%
!! CCTGTCACTTTGTCTAGCAT+GGG + chr7_3:79608134-79608153 Msa1127910:CDS 45.0%
TCACTTTGTCTAGCATGGGT+TGG + chr7_3:79608138-79608157 Msa1127910:CDS 45.0%
CAAGTCATCAGACAGACTGA+CGG - chr7_3:79608210-79608229 None:intergenic 45.0%
! TACCCATCCAAAGGTATAGG+AGG - chr7_3:79608240-79608259 None:intergenic 45.0%
GCTAAGGGGAAATACAAGGA+TGG + chr7_3:79608566-79608585 Msa1127910:CDS 45.0%
! TTCTCAAGTTGCTATCAGGG+TGG + chr7_3:79609220-79609239 Msa1127910:intron 45.0%
! TCTCAAGTTGCTATCAGGGT+GGG + chr7_3:79609221-79609240 Msa1127910:intron 45.0%
AGAACAGAGCAAAGCCTTGA+CGG - chr7_3:79609290-79609309 None:intergenic 45.0%
ATGTAGTGTGTGCTGGAATG+AGG - chr7_3:79609357-79609376 None:intergenic 45.0%
TGAGATGCTTATTGCTGCAG+TGG + chr7_3:79610077-79610096 Msa1127910:CDS 45.0%
GAGATGCTTATTGCTGCAGT+GGG + chr7_3:79610078-79610097 Msa1127910:CDS 45.0%
TCAACTTCAAAGCATGCCCA+AGG - chr7_3:79610176-79610195 None:intergenic 45.0%
TTACCATGATACAGTCCACC+AGG + chr7_3:79610203-79610222 Msa1127910:CDS 45.0%
ATAAAGTGAGACTCACCTGG+TGG - chr7_3:79610221-79610240 None:intergenic 45.0%
TCACGAACGTTTGTTCCGAT+TGG + chr7_3:79610424-79610443 Msa1127910:CDS 45.0%
TTATCCATCTCTGGGCCAAT+CGG - chr7_3:79610442-79610461 None:intergenic 45.0%
GGCAGTGAACCAGAATTTGA+GGG - chr7_3:79610544-79610563 None:intergenic 45.0%
AGGCAGTGAACCAGAATTTG+AGG - chr7_3:79610545-79610564 None:intergenic 45.0%
! GCATCAGAGTTTGAAGCATC+AGG - chr7_3:79610565-79610584 None:intergenic 45.0%
ATTGGACACATCCACAAGCA+AGG - chr7_3:79610599-79610618 None:intergenic 45.0%
AGGAACTTCTTCTGGGTAAC+TGG - chr7_3:79610668-79610687 None:intergenic 45.0%
CCTTATCGATCACCTAAGAC+CGG - chr7_3:79610704-79610723 None:intergenic 45.0%
AGGAACATTCAGAGCTAGGT+TGG + chr7_3:79610721-79610740 Msa1127910:three_prime_UTR 45.0%
!! ACATTCAGAGCTAGGTTGGT+TGG + chr7_3:79610725-79610744 Msa1127910:three_prime_UTR 45.0%
!! CATTCAGAGCTAGGTTGGTT+GGG + chr7_3:79610726-79610745 Msa1127910:three_prime_UTR 45.0%
AGCGTGGTTTCTTACATTCC+TGG + chr7_3:79610822-79610841 Msa1127910:three_prime_UTR 45.0%
!!! CCGTTTTGTTTGCTAGGGAA+TGG - chr7_3:79610921-79610940 None:intergenic 45.0%
!!! CATGGACCGTTTTGTTTGCT+AGG - chr7_3:79610927-79610946 None:intergenic 45.0%
AGTGGATAGGACACAACCAA+CGG - chr7_3:79610983-79611002 None:intergenic 45.0%
!! TAAAAAAAAAAAAAAAAAAC+AGG - chr7_3:79608372-79608391 None:intergenic 5.0%
!!! AATAAAAACTAATTTTTATA+TGG + chr7_3:79608928-79608947 Msa1127910:intron 5.0%
GTCTGTGTGTGTGTGGGAAT+TGG - chr7_3:79606245-79606264 None:intergenic 50.0%
GTGTGTGTCTGTGTGTGTGT+GGG - chr7_3:79606251-79606270 None:intergenic 50.0%
CACACACAGACACACACGTT+TGG + chr7_3:79606254-79606273 Msa1127910:five_prime_UTR 50.0%
!! ATGGCGACTGTTGTTGGCTT+CGG - chr7_3:79606405-79606424 None:intergenic 50.0%
! TCTCGGATCTGATTCTGGCT+AGG + chr7_3:79606475-79606494 Msa1127910:five_prime_UTR 50.0%
! CTCGGATCTGATTCTGGCTA+GGG + chr7_3:79606476-79606495 Msa1127910:five_prime_UTR 50.0%
GGAAGGTCAAAATGGGGTGA+AGG + chr7_3:79606928-79606947 Msa1127910:intron 50.0%
TACCCGTGCAATCACAAGAG+TGG + chr7_3:79607726-79607745 Msa1127910:intron 50.0%
ACCCGTGCAATCACAAGAGT+GGG + chr7_3:79607727-79607746 Msa1127910:intron 50.0%
TCCCACTCTTGTGATTGCAC+GGG - chr7_3:79607731-79607750 None:intergenic 50.0%
GTGCAATCACAAGAGTGGGA+AGG + chr7_3:79607731-79607750 Msa1127910:intron 50.0%
CGAACCCACTTAGTGGGATA+AGG + chr7_3:79607915-79607934 Msa1127910:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr7_3:79607923-79607942 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr7_3:79607920-79607939 Msa1127910:intron 50.0%
! GGGATAAGGCTTGGTTGTTG+TGG + chr7_3:79607929-79607948 Msa1127910:intron 50.0%
CCCATGCTAGACAAAGTGAC+AGG - chr7_3:79608137-79608156 None:intergenic 50.0%
!! CTTTGTCTAGCATGGGTTGG+TGG + chr7_3:79608141-79608160 Msa1127910:CDS 50.0%
AGAGGCTAGGATGACACATG+TGG + chr7_3:79608404-79608423 Msa1127910:intron 50.0%
GAACAGAGCAAAGCCTTGAC+GGG - chr7_3:79609289-79609308 None:intergenic 50.0%
TGTGTGCTGGAATGAGGACA+CGG - chr7_3:79609351-79609370 None:intergenic 50.0%
TGCAAAGTCGGGATTCATCC+AGG + chr7_3:79610011-79610030 Msa1127910:CDS 50.0%
GCTAATATAGGTGGATCCCG+TGG + chr7_3:79610138-79610157 Msa1127910:CDS 50.0%
!! TCACCTGGTGGACTGTATCA+TGG - chr7_3:79610209-79610228 None:intergenic 50.0%
AACCACAGTGAAGGGGAAGA+AGG + chr7_3:79610385-79610404 Msa1127910:CDS 50.0%
TTCCTTCTTCCCCTTCACTG+TGG - chr7_3:79610390-79610409 None:intergenic 50.0%
GTGAAGGGGAAGAAGGAACA+AGG + chr7_3:79610392-79610411 Msa1127910:CDS 50.0%
CTGCTGCAGGAACTTCTTCT+GGG - chr7_3:79610675-79610694 None:intergenic 50.0%
TCTGCTGCAGGAACTTCTTC+TGG - chr7_3:79610676-79610695 None:intergenic 50.0%
GTTCCTGCAGCAGATAAAGC+CGG + chr7_3:79610682-79610701 Msa1127910:CDS 50.0%
CAGCAGATAAAGCCGGTCTT+AGG + chr7_3:79610689-79610708 Msa1127910:CDS 50.0%
CCGGTCTTAGGTGATCGATA+AGG + chr7_3:79610701-79610720 Msa1127910:exon 50.0%
TAGGGAATGGAGGCTGACAA+CGG - chr7_3:79610908-79610927 None:intergenic 50.0%
CGTGTGTGTCTGTGTGTGTG+TGG - chr7_3:79606252-79606271 None:intergenic 55.0%
! ACGTTTGGGTTCTCGCGTTG+TGG + chr7_3:79606269-79606288 Msa1127910:five_prime_UTR 55.0%
! TTTGGGTTCTCGCGTTGTGG+TGG + chr7_3:79606272-79606291 Msa1127910:five_prime_UTR 55.0%
AGCCAAAGCGATTGCACCGA+CGG - chr7_3:79606599-79606618 None:intergenic 55.0%
! ACTAAGTGGGTTCGGCTGCA+TGG - chr7_3:79607909-79607928 None:intergenic 55.0%
ATGCAGCCGAACCCACTTAG+TGG + chr7_3:79607908-79607927 Msa1127910:intron 55.0%
TGCAGCCGAACCCACTTAGT+GGG + chr7_3:79607909-79607928 Msa1127910:intron 55.0%
GACACATGTGGCCCACTGTA+TGG + chr7_3:79608416-79608435 Msa1127910:intron 55.0%
AAGCAGCTTCGTCAGCATCC+TGG - chr7_3:79610032-79610051 None:intergenic 55.0%
AAGGCTAGCGGTCAAACCAC+GGG - chr7_3:79610157-79610176 None:intergenic 55.0%
CAAGGCTAGCGGTCAAACCA+CGG - chr7_3:79610158-79610177 None:intergenic 55.0%
!! GTGGTTTGACCGCTAGCCTT+GGG + chr7_3:79610157-79610176 Msa1127910:CDS 55.0%
CAAAGCATGCCCAAGGCTAG+CGG - chr7_3:79610169-79610188 None:intergenic 55.0%
! TGTTCCGATTGGCCCAGAGA+TGG + chr7_3:79610435-79610454 Msa1127910:CDS 55.0%
! AGACCGGCTTTATCTGCTGC+AGG - chr7_3:79610688-79610707 None:intergenic 55.0%
AGGGAATGGAGGCTGACAAC+GGG - chr7_3:79610907-79610926 None:intergenic 55.0%
CACCGTCGGTGCAATCGCTT+TGG + chr7_3:79606594-79606613 Msa1127910:CDS 60.0%
!! CTAGCATGGGTTGGTGGTCC+TGG + chr7_3:79608147-79608166 Msa1127910:CDS 60.0%
! CGTGGTTTGACCGCTAGCCT+TGG + chr7_3:79610156-79610175 Msa1127910:CDS 60.0%
GGGAATGGAGGCTGACAACG+GGG - chr7_3:79610906-79610925 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79606205 79611182 79606205 ID=Msa1127910;Name=Msa1127910
chr7_3 mRNA 79606205 79611182 79606205 ID=Msa1127910-mRNA-1;Parent=Msa1127910;Name=Msa1127910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=342|1|1|1|1|1|6|468|420
chr7_3 exon 79606205 79606702 79606205 ID=Msa1127910-mRNA-1:exon:22597;Parent=Msa1127910-mRNA-1
chr7_3 exon 79607215 79607288 79607215 ID=Msa1127910-mRNA-1:exon:22598;Parent=Msa1127910-mRNA-1
chr7_3 exon 79608107 79608256 79608107 ID=Msa1127910-mRNA-1:exon:22599;Parent=Msa1127910-mRNA-1
chr7_3 exon 79608481 79608766 79608481 ID=Msa1127910-mRNA-1:exon:22600;Parent=Msa1127910-mRNA-1
chr7_3 exon 79609991 79610224 79609991 ID=Msa1127910-mRNA-1:exon:22601;Parent=Msa1127910-mRNA-1
chr7_3 exon 79610352 79611182 79610352 ID=Msa1127910-mRNA-1:exon:22602;Parent=Msa1127910-mRNA-1
chr7_3 five_prime_UTR 79606205 79606546 79606205 ID=Msa1127910-mRNA-1:five_prime_utr;Parent=Msa1127910-mRNA-1
chr7_3 CDS 79606547 79606702 79606547 ID=Msa1127910-mRNA-1:cds;Parent=Msa1127910-mRNA-1
chr7_3 CDS 79607215 79607288 79607215 ID=Msa1127910-mRNA-1:cds;Parent=Msa1127910-mRNA-1
chr7_3 CDS 79608107 79608256 79608107 ID=Msa1127910-mRNA-1:cds;Parent=Msa1127910-mRNA-1
chr7_3 CDS 79608481 79608766 79608481 ID=Msa1127910-mRNA-1:cds;Parent=Msa1127910-mRNA-1
chr7_3 CDS 79609991 79610224 79609991 ID=Msa1127910-mRNA-1:cds;Parent=Msa1127910-mRNA-1
chr7_3 CDS 79610352 79610714 79610352 ID=Msa1127910-mRNA-1:cds;Parent=Msa1127910-mRNA-1
chr7_3 three_prime_UTR 79610715 79611182 79610715 ID=Msa1127910-mRNA-1:three_prime_utr;Parent=Msa1127910-mRNA-1
Gene Sequence

>Msa1127910

ATGGGGGTACTGCTTCCGCTTTTTTTCTATGTTATCGCTTTCTTTTGCACCGTCGGTGCAATCGCTTTGGCTATTCTTCACATTTACAGACACCTTCTTAATTATACTGAACCTACTTATCAACGCTTCATTGTTCGCATCGTTTTCATGGTTCCGGTTTATGCACTGATGTCTTTCTTGTCCCTTGTTTTACCGCGGCTTTCAATCTACTTTAATTCAATCCGTGAAGTCTATGAAGCTTGGGTCATTTACAATTTCCTGTCACTTTGTCTAGCATGGGTTGGTGGTCCTGGATCAGTTGTTATAAGTTTGAGTGGTCGGGTTCTGAAGCCGTCAGTCTGTCTGATGACTTGTTGCTTTCCTCCTATACCTTTGGATGGGCGTTTCATACGTAAGTGCAAGCAAGGGTGTTTGCAGTTTGTGATTTTGAAGCCCATTTTAGTTGTTGTTACACTTATTCTTTACGCTAAGGGGAAATACAAGGATGGGAATTTCAATCCAAAGCAGTCATACTTGTATCTCACAATCATCTATACATTCTCATATACAATGGCTCTCTATGCTCTTGCATTGTTTTACGTGGCATGCAAGGATCTGCTTCAGCCATTCAATCCAGTCCCAAAGTTTATTATCATAAAGTCTGTTGTATTCCTTACTTACTGGCAGGGGGTGCTGTTCTTTCTTGCTGCAAAGTCGGGATTCATCCAGGATGCTGACGAAGCTGCTTTACTTCAAAATTTTATCATTTGTGTTGAGATGCTTATTGCTGCAGTGGGCCACTTTTATGCATTTCCATACAAAGAATATGCTGGAGCTAATATAGGTGGATCCCGTGGTTTGACCGCTAGCCTTGGGCATGCTTTGAAGTTGAATGACTTTTACCATGATACAGTCCACCAGTTCGCACCAACGTATCATGATTATGTTCTTTACAACCACAGTGAAGGGGAAGAAGGAACAAGGAAGTACAGGTCACGAACGTTTGTTCCGATTGGCCCAGAGATGGATAATGTGAGAAAAAATAAGCATATAACTGGAAACAAGGTAGATGACATACAACTAACAAGCTTCTCTTCTGATAGTAGTACTCCCTCAAATTCTGGTTCACTGCCTGATGCTTCAAACTCTGATGCAATCAAATCTTCCTTGCTTGTGGATGTGTCCAATTCTGCGTCCATACCATATGATTTGACACTTATTGACTTGGATGTATCCAGTTACCCAGAAGAAGTTCCTGCAGCAGATAAAGCCGGTCTTAGGTGA
Protein sequence

>Msa1127910

MGVLLPLFFYVIAFFCTVGAIALAILHIYRHLLNYTEPTYQRFIVRIVFMVPVYALMSFLSLVLPRLSIYFNSIREVYEAWVIYNFLSLCLAWVGGPGSVVISLSGRVLKPSVCLMTCCFPPIPLDGRFIRKCKQGCLQFVILKPILVVVTLILYAKGKYKDGNFNPKQSYLYLTIIYTFSYTMALYALALFYVACKDLLQPFNPVPKFIIIKSVVFLTYWQGVLFFLAAKSGFIQDADEAALLQNFIICVEMLIAAVGHFYAFPYKEYAGANIGGSRGLTASLGHALKLNDFYHDTVHQFAPTYHDYVLYNHSEGEEGTRKYRSRTFVPIGPEMDNVRKNKHITGNKVDDIQLTSFSSDSSTPSNSGSLPDASNSDAIKSSLLVDVSNSASIPYDLTLIDLDVSSYPEEVPAADKAGLR*