AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651310 MtrunA17_Chr4g0043871 96.940 621 19 0 1 621 1 621 0.0 1250
Msa0651310 MtrunA17_Chr1g0199691 41.935 589 294 14 41 615 59 613 1.63e-135 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651310 AT1G70820.1 74.110 618 150 5 1 615 1 611 0.0 949
Msa0651310 AT1G70820.2 74.874 597 140 5 1 594 1 590 0.0 926
Msa0651310 AT5G17530.5 43.643 527 256 10 73 588 20 516 1.00e-133 402
Msa0651310 AT5G17530.1 43.633 534 258 11 68 588 52 555 2.66e-133 403
Msa0651310 AT5G17530.7 43.633 534 258 11 68 588 52 555 2.66e-133 403
Msa0651310 AT5G17530.2 43.633 534 258 11 68 588 52 555 2.66e-133 403
Msa0651310 AT5G17530.6 43.633 534 258 11 68 588 52 555 2.66e-133 403
Msa0651310 AT5G17530.3 43.643 527 256 10 73 588 92 588 1.50e-132 402
Msa0651310 AT5G17530.4 44.466 524 248 11 68 578 85 578 7.10e-132 401

Find 158 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGATAAGTTTGTTGAAAA+TGG 0.159254 4_3:-58680525 Msa0651310:CDS
AACTCCACTTAAGGGATTTC+AGG 0.200454 4_3:-58682979 Msa0651310:intron
TCTCCTTGATGATTTCTCTT+AGG 0.241263 4_3:+58683027 None:intergenic
GTACAGGAAGGGAGGCTTAA+AGG 0.243975 4_3:-58681152 Msa0651310:intron
ATGAGTTTGTCACCGTTTAT+TGG 0.279165 4_3:+58681968 None:intergenic
GATATCCTGTTGAGAATGTT+AGG 0.282778 4_3:-58683498 Msa0651310:CDS
GTCATTCTTTGCTAGGAAAT+AGG 0.284504 4_3:-58683792 Msa0651310:CDS
GAGGCAATATCAGAGAGTTT+TGG 0.300966 4_3:-58683556 Msa0651310:CDS
AGTAATAATCCCAAGATATA+AGG 0.313843 4_3:-58680345 Msa0651310:three_prime_UTR
CTTGGGATTATTACTAGTTT+AGG 0.316416 4_3:+58680353 None:intergenic
CTCCTTTGTCAATGACATTT+CGG 0.316509 4_3:+58681813 None:intergenic
AACCTTGCATATTGTAAATC+AGG 0.317494 4_3:+58680494 None:intergenic
TGCAAGTTCACAGCAATGTT+TGG 0.318198 4_3:+58680746 None:intergenic
TGGTTGTATGGTGTTTGATA+TGG 0.318441 4_3:-58683401 Msa0651310:CDS
ATATTGGATTTGTAAGGTTA+TGG 0.320920 4_3:-58683958 Msa0651310:five_prime_UTR
TATTCATATTCCTTATATCT+TGG 0.323647 4_3:+58680335 None:intergenic
CATATTGTAAATCAGGCTAA+TGG 0.323981 4_3:+58680501 None:intergenic
AATGGTTTAGAGAAGGAAAA+AGG 0.330346 4_3:-58683520 Msa0651310:CDS
GCATTATGAAACTCCACTTA+AGG 0.337071 4_3:-58682988 Msa0651310:CDS
TGCTTTAGCATTTCGAGGTT+CGG 0.347623 4_3:+58681444 None:intergenic
TTAGAAAATTCAGCTGATCT+TGG 0.348367 4_3:-58682046 Msa0651310:CDS
CATTATGAAACTCCACTTAA+GGG 0.365922 4_3:-58682987 Msa0651310:CDS
TGTCTATGATGCTTCAATAA+TGG 0.374026 4_3:-58683329 Msa0651310:intron
ATTCATATTCCTTATATCTT+GGG 0.377218 4_3:+58680336 None:intergenic
CTTATTACAGATTTATTGAA+TGG 0.379212 4_3:+58683730 None:intergenic
CCTGTTATATTGGATTTGTA+AGG 0.382963 4_3:-58683964 Msa0651310:five_prime_UTR
GTGAATGCTGGAAACGGTTC+AGG 0.385357 4_3:-58682211 Msa0651310:CDS
CCTTACAAATCCAATATAAC+AGG 0.393617 4_3:+58683964 None:intergenic
ATGAAGAATTGGACAAGATT+AGG 0.394518 4_3:-58683663 Msa0651310:CDS
AGAAGATGAGAAACCAAGTT+TGG 0.394739 4_3:+58683756 None:intergenic
GTAATAAGTGTGAAATGTTA+TGG 0.397911 4_3:-58683715 Msa0651310:CDS
GCAAGTTCACAGCAATGTTT+GGG 0.402997 4_3:+58680747 None:intergenic
GAAAACCATTTCCTTGATGA+TGG 0.403160 4_3:-58681722 Msa0651310:intron
AGGCCTTAACATTTAGCTAT+AGG 0.405868 4_3:+58680373 None:intergenic
TGTACGAGCATCGGTTACTA+TGG 0.406310 4_3:+58681901 None:intergenic
TAGACTCATGTGGTGATTGT+TGG 0.408525 4_3:-58681121 Msa0651310:CDS
TTTGGGGAGTGGGTTATCAA+TGG 0.408829 4_3:-58683538 Msa0651310:CDS
TTCAAACCATTACGTGTGTA+AGG 0.408968 4_3:+58683203 None:intergenic
GGTTGTATGGTGTTTGATAT+GGG 0.413997 4_3:-58683400 Msa0651310:CDS
TACAGGAAGGGAGGCTTAAA+GGG 0.417177 4_3:-58681151 Msa0651310:intron
CATGGCTGCCATTGTATTGA+AGG 0.421469 4_3:-58681939 Msa0651310:CDS
TTGAGTGTTGCAGTGTTTGC+CGG 0.424973 4_3:-58683436 Msa0651310:CDS
TCTTGCTCGTGCTGGTTGTA+TGG 0.433556 4_3:-58683413 Msa0651310:CDS
TCGGGATTGGGAATGTGATT+AGG 0.440559 4_3:+58682106 None:intergenic
CAGAATGGTTCGGATGTTAG+AGG 0.441225 4_3:-58683634 Msa0651310:CDS
AAGCTTGGTGCAGATACCTT+TGG 0.445592 4_3:-58682160 Msa0651310:CDS
ATATTGTAAATCAGGCTAAT+GGG 0.446537 4_3:+58680502 None:intergenic
CATTTGCCTTACACACGTAA+TGG 0.447241 4_3:-58683209 Msa0651310:CDS
ACTAACCATCATCAAGGAAA+TGG 0.455559 4_3:+58681717 None:intergenic
CTAAGTTCTACTGATTCATA+AGG 0.458468 4_3:+58681481 None:intergenic
ACACACTGTCATTCTTTGCT+AGG 0.461028 4_3:-58683799 Msa0651310:CDS
AGTAGCGGTGGATGAAGAAT+TGG 0.461197 4_3:-58683674 Msa0651310:CDS
TCGGTTACTATGGTTGATCC+TGG 0.462108 4_3:+58681911 None:intergenic
CTGCCTATAGCTAAATGTTA+AGG 0.466168 4_3:-58680376 Msa0651310:three_prime_UTR
CAAACCTGAAATCCCTTAAG+TGG 0.467227 4_3:+58682975 None:intergenic
TTTGCCGGTCTTGCTCGTGC+TGG 0.468617 4_3:-58683421 Msa0651310:CDS
TCACCTTATCTCTTAAAACT+TGG 0.470522 4_3:-58683920 Msa0651310:five_prime_UTR
GGACGCGACCCTCGAGTCAC+AGG 0.474920 4_3:-58683466 Msa0651310:CDS
GACACCCTAACATTCTCAAC+AGG 0.478256 4_3:+58683493 None:intergenic
GTTGCATTGGAAGGCGAGAA+AGG 0.478585 4_3:-58683610 Msa0651310:CDS
AACAAAGGGAATCCAATAAA+CGG 0.482733 4_3:-58681980 Msa0651310:CDS
TGATTAGGAAACATGCCATC+AGG 0.483044 4_3:+58682121 None:intergenic
AGACTCATGTGGTGATTGTT+GGG 0.486205 4_3:-58681120 Msa0651310:CDS
CATCTTATGATTGAAACATC+TGG 0.487363 4_3:-58681761 Msa0651310:CDS
CCTCGAAATGCTAAAGCAAA+AGG 0.489207 4_3:-58681439 Msa0651310:CDS
CCTCCACGGCAGGAGGAGTA+AGG 0.491033 4_3:+58683575 None:intergenic
GGTGAAAATTATAATTGAAA+TGG 0.492081 4_3:-58681566 Msa0651310:CDS
TCTGATATTGCCTCCACGGC+AGG 0.494254 4_3:+58683565 None:intergenic
ACTAAGTTTATAACTGATAG+AGG 0.494389 4_3:-58681866 Msa0651310:CDS
CTTATGAATCAGTAGAACTT+AGG 0.496088 4_3:-58681480 Msa0651310:CDS
TATCAATTTGAGCAATGTCT+AGG 0.498567 4_3:+58680541 None:intergenic
CTTAACATTTAGCTATAGGC+AGG 0.499510 4_3:+58680377 None:intergenic
TAGGAGGCTTCAGAATGGTT+CGG 0.500282 4_3:-58683644 Msa0651310:CDS
GTGATTGTTGGGTGAGTGAA+GGG 0.507653 4_3:-58681109 Msa0651310:CDS
TCAAGGAGGTTGCTTGTCAA+TGG 0.508461 4_3:-58680714 Msa0651310:CDS
TGTTGACATATGAGACAAGA+TGG 0.511191 4_3:+58680310 None:intergenic
TGAACATGGACAACATGGTT+GGG 0.514106 4_3:-58680795 Msa0651310:CDS
ATGAACATGGACAACATGGT+TGG 0.518204 4_3:-58680796 Msa0651310:CDS
AAGCTTGGTGGATCAGATGA+AGG 0.519389 4_3:-58681535 Msa0651310:CDS
ATTGAAGCATCATAGACAAA+TGG 0.520839 4_3:+58683334 None:intergenic
CTACAGATAATAGTGAATGC+TGG 0.522007 4_3:-58682223 Msa0651310:intron
TCGTAAATATGCAAATAGAT+TGG 0.522642 4_3:-58683117 Msa0651310:CDS
ATATTGATGCTCAAATGTAC+AGG 0.524473 4_3:-58681055 Msa0651310:intron
TGACAAACTCATTGCTCTCA+TGG 0.524707 4_3:-58681957 Msa0651310:CDS
ATATAATGAAGGGGCCTACA+TGG 0.525333 4_3:-58681590 Msa0651310:intron
TTTGAGCATCAATATGAGCC+GGG 0.527926 4_3:+58681063 None:intergenic
GGTGATTGTTGGGTGAGTGA+AGG 0.531696 4_3:-58681110 Msa0651310:CDS
GAGAATGTTAGGGTGTCTCT+TGG 0.540583 4_3:-58683487 Msa0651310:CDS
ATTTGAGCATCAATATGAGC+CGG 0.540769 4_3:+58681062 None:intergenic
ACAACCAGCACGAGCAAGAC+CGG 0.545469 4_3:+58683417 None:intergenic
ATAATAGTGAATGCTGGAAA+CGG 0.546802 4_3:-58682217 Msa0651310:CDS
TTTGAGATGCAGAGAGCCAA+AGG 0.548288 4_3:+58682144 None:intergenic
ATTGTATTGAAGGAAAATCC+AGG 0.558299 4_3:-58681929 Msa0651310:CDS
CACCATTGTTTATACCGCGT+TGG 0.558868 4_3:-58681839 Msa0651310:CDS
AGCCTGATTTACAATATGCA+AGG 0.560226 4_3:-58680496 Msa0651310:exon
AACAATGAACATGGACAACA+TGG 0.562336 4_3:-58680800 Msa0651310:CDS
TAACTAACTAACCATCATCA+AGG 0.564044 4_3:+58681711 None:intergenic
GGTGGATCAGATGAAGGGAT+TGG 0.566186 4_3:-58681529 Msa0651310:CDS
CGACCTTACTCCTCCTGCCG+TGG 0.566388 4_3:-58683578 Msa0651310:CDS
GGTTATCAATGGTTTAGAGA+AGG 0.568136 4_3:-58683527 Msa0651310:CDS
TACGATGTCTTAGACAAGCT+TGG 0.568721 4_3:-58682175 Msa0651310:CDS
ATATCCTGTTGAGAATGTTA+GGG 0.574389 4_3:-58683497 Msa0651310:CDS
GGATGTTAGAGGAGTTGCAT+TGG 0.576031 4_3:-58683623 Msa0651310:CDS
GCGGCGTGGTTGATAACAAA+GGG 0.576808 4_3:-58681994 Msa0651310:CDS
ATTTAGACCCTGTGACTCGA+GGG 0.578792 4_3:+58683458 None:intergenic
CAAAGGAGTTCAGCTTAACA+AGG 0.582640 4_3:-58681798 Msa0651310:CDS
CCTTACTCCTCCTGCCGTGG+AGG 0.582653 4_3:-58683575 Msa0651310:CDS
AACTTGCAATCATCTGCTCA+AGG 0.583771 4_3:-58680731 Msa0651310:CDS
GTTAGAGGAGTTGCATTGGA+AGG 0.585950 4_3:-58683619 Msa0651310:CDS
TCTCTGCATCTCAAACCTGA+TGG 0.591260 4_3:-58682136 Msa0651310:CDS
AGTGGAGTTTCATAATGCAA+AGG 0.592830 4_3:+58682993 None:intergenic
ATGTTGCTGTACAGGAAGGG+AGG 0.593434 4_3:-58681160 Msa0651310:intron
AAGAATTGGACAAGATTAGG+AGG 0.597154 4_3:-58683660 Msa0651310:CDS
GATATTGCCTCCACGGCAGG+AGG 0.597822 4_3:+58683568 None:intergenic
AAGATTAGGAGGCTTCAGAA+TGG 0.602089 4_3:-58683649 Msa0651310:CDS
ATGGTAAGAATGAAGCTTGG+TGG 0.602153 4_3:-58681547 Msa0651310:CDS
GAAATGGTAAGAATGAAGCT+TGG 0.602393 4_3:-58681550 Msa0651310:CDS
ACTCTCTGATATTGCCTCCA+CGG 0.605057 4_3:+58683561 None:intergenic
TCCCGAGGACAAAATTGCCA+TGG 0.605099 4_3:-58682089 Msa0651310:CDS
GGAAGGGAGGCTTAAAGGGT+GGG 0.606977 4_3:-58681147 Msa0651310:CDS
GACGCGACCCTCGAGTCACA+GGG 0.611240 4_3:-58683465 Msa0651310:CDS
GATACCGATGTTGACAGAAG+CGG 0.611913 4_3:-58682013 Msa0651310:CDS
AATTTAGACCCTGTGACTCG+AGG 0.613432 4_3:+58683457 None:intergenic
AATGTGCTCATGAAACAAGC+GGG 0.613902 4_3:+58683364 None:intergenic
AAATGCTAAAGCAAAAGGAT+CGG 0.620165 4_3:-58681434 Msa0651310:CDS
GAAGCATCATAGACAAATGG+AGG 0.622415 4_3:+58683337 None:intergenic
TGCTAAAGCAAAAGGATCGG+AGG 0.622933 4_3:-58681431 Msa0651310:CDS
GGAGTTCAGCTTAACAAGGA+GGG 0.622995 4_3:-58681794 Msa0651310:CDS
CAATGTGCTCATGAAACAAG+CGG 0.623267 4_3:+58683363 None:intergenic
CGACATGCTTGTACGAGCAT+CGG 0.627032 4_3:+58681892 None:intergenic
AGGAAGGGAGGCTTAAAGGG+TGG 0.627499 4_3:-58681148 Msa0651310:CDS
AGCGGCGTGGTTGATAACAA+AGG 0.627508 4_3:-58681995 Msa0651310:CDS
AGCTTGGTGGATCAGATGAA+GGG 0.629122 4_3:-58681534 Msa0651310:CDS
AATGCTGGAAACGGTTCAGG+AGG 0.629528 4_3:-58682208 Msa0651310:CDS
TACCGAAATGTCATTGACAA+AGG 0.633169 4_3:-58681815 Msa0651310:CDS
ATGATTGAAACATCTGGTCA+CGG 0.638606 4_3:-58681755 Msa0651310:CDS
AACATGGTTGGGTACACATG+AGG 0.643450 4_3:-58680784 Msa0651310:CDS
AAAGTATCAAACAATGAACA+TGG 0.643511 4_3:-58680809 Msa0651310:CDS
GCACCTAAGAGAAATCATCA+AGG 0.645515 4_3:-58683030 Msa0651310:CDS
AACCAACGCGGTATAAACAA+TGG 0.648208 4_3:+58681837 None:intergenic
TTTAAGCAGAGTAGACACTC+TGG 0.648407 4_3:+58683094 None:intergenic
TGCTAAGTATGATGAAGTAG+CGG 0.649549 4_3:-58683689 Msa0651310:CDS
GGGTGGGAGTTAGACTCATG+TGG 0.663424 4_3:-58681131 Msa0651310:CDS
GGGTGTCATTTGTATCAACA+AGG 0.663565 4_3:+58681084 None:intergenic
TAATTCAAATAAAGCAAGAG+CGG 0.666600 4_3:-58683894 Msa0651310:five_prime_UTR
GCGGCAAACAAAATCAACAA+TGG 0.668178 4_3:-58683875 Msa0651310:exon
AGGAGTTCAGCTTAACAAGG+AGG 0.668823 4_3:-58681795 Msa0651310:CDS
CGATGTTGACAGAAGCGGCG+TGG 0.670101 4_3:-58682008 Msa0651310:CDS
TTGAGCATCAATATGAGCCG+GGG 0.674597 4_3:+58681064 None:intergenic
TAATGAAGGGGCCTACATGG+TGG 0.680927 4_3:-58681587 Msa0651310:intron
TGTTGATACAAATGACACCC+CGG 0.681662 4_3:-58681081 Msa0651310:CDS
TAATCACATTCCCAATCCCG+AGG 0.693986 4_3:-58682104 Msa0651310:CDS
AAGTTTATAACTGATAGAGG+AGG 0.701127 4_3:-58681863 Msa0651310:CDS
TTGCAATCATCTGCTCAAGG+AGG 0.704569 4_3:-58680728 Msa0651310:CDS
TGACATTTCGGTAACCAACG+CGG 0.705467 4_3:+58681825 None:intergenic
TAAGTATGATGAAGTAGCGG+TGG 0.713728 4_3:-58683686 Msa0651310:CDS
CACGCCGCTTCTGTCAACAT+CGG 0.714678 4_3:+58682009 None:intergenic
AACATTTCGAAACTACATCG+AGG 0.755001 4_3:-58681401 Msa0651310:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTAATATATTGAAGAATA+GGG + chr4_3:58681435-58681454 None:intergenic 15.0%
!! ATCTTAATATATTGAAGAAT+AGG + chr4_3:58681436-58681455 None:intergenic 15.0%
!! TTTCTGTATATATATAATGA+AGG - chr4_3:58682704-58682723 Msa0651310:intron 15.0%
!! TTCTGTATATATATAATGAA+GGG - chr4_3:58682705-58682724 Msa0651310:intron 15.0%
!! TGCAATAATAATTGAATAAA+AGG + chr4_3:58683713-58683732 None:intergenic 15.0%
!!! TTTTTTTGTTCCTGTTATAT+TGG - chr4_3:58680331-58680350 Msa0651310:three_prime_UTR 20.0%
!! CTTATTACAGATTTATTGAA+TGG + chr4_3:58680578-58680597 None:intergenic 20.0%
!!! ATTATGTATAGTACTTTTGA+AGG + chr4_3:58681022-58681041 None:intergenic 20.0%
!! CTTCAATATATTAAGATCTT+AGG - chr4_3:58681439-58681458 Msa0651310:CDS 20.0%
!!! AAGTTTTCAAAGAAAATAGA+GGG + chr4_3:58682029-58682048 None:intergenic 20.0%
!!! TAAGTTTTCAAAGAAAATAG+AGG + chr4_3:58682030-58682049 None:intergenic 20.0%
!! TCTGTATATATATAATGAAG+GGG - chr4_3:58682706-58682725 Msa0651310:intron 20.0%
!! GGTGAAAATTATAATTGAAA+TGG - chr4_3:58682739-58682758 Msa0651310:intron 20.0%
!! TACACGTATATAAAAAATTG+TGG + chr4_3:58683016-58683035 None:intergenic 20.0%
!! GAAATTTCTCCTTAAATATA+AGG - chr4_3:58683337-58683356 Msa0651310:CDS 20.0%
!! TGAAAAAGTCCTTATATTTA+AGG + chr4_3:58683349-58683368 None:intergenic 20.0%
!!! GCGTTTATTTTTTACAAAAA+GGG - chr4_3:58683380-58683399 Msa0651310:CDS 20.0%
!!! TTATTTTTTACAAAAAGGGA+CGG - chr4_3:58683384-58683403 Msa0651310:CDS 20.0%
!!! TTTAGAATAATAAATCTGAG+TGG + chr4_3:58683652-58683671 None:intergenic 20.0%
!!! ATTGATAAGTTTGTTGAAAA+TGG - chr4_3:58683780-58683799 Msa0651310:CDS 20.0%
!! ATTCATATTCCTTATATCTT+GGG + chr4_3:58683972-58683991 None:intergenic 20.0%
!! TATTCATATTCCTTATATCT+TGG + chr4_3:58683973-58683992 None:intergenic 20.0%
! ATATTGGATTTGTAAGGTTA+TGG - chr4_3:58680347-58680366 Msa0651310:three_prime_UTR 25.0%
!!! TAACCAAGTTTTAAGAGATA+AGG + chr4_3:58680391-58680410 None:intergenic 25.0%
! TAATTCAAATAAAGCAAGAG+CGG - chr4_3:58680411-58680430 Msa0651310:three_prime_UTR 25.0%
!!! ATATTTTTGCAAACCAAACT+TGG - chr4_3:58680536-58680555 Msa0651310:CDS 25.0%
! GTAATAAGTGTGAAATGTTA+TGG - chr4_3:58680590-58680609 Msa0651310:intron 25.0%
! GTTATTTATTCAACAGATGA+CGG - chr4_3:58681068-58681087 Msa0651310:CDS 25.0%
!!! TTGAAATTTTTTACGAAGAG+AGG - chr4_3:58681120-58681139 Msa0651310:CDS 25.0%
!!! TGAAATTTTTTACGAAGAGA+GGG - chr4_3:58681121-58681140 Msa0651310:CDS 25.0%
! TCGTAAATATGCAAATAGAT+TGG - chr4_3:58681188-58681207 Msa0651310:intron 25.0%
! ATTTAGAAGATACCAAATAC+AGG + chr4_3:58681397-58681416 None:intergenic 25.0%
! TATTAAGATCTTAGGAACTA+CGG - chr4_3:58681447-58681466 Msa0651310:CDS 25.0%
! ACTAGTTAAACTGTTCAATT+CGG + chr4_3:58681497-58681516 None:intergenic 25.0%
! TTAATTTAAACATGACCTAG+AGG - chr4_3:58681703-58681722 Msa0651310:intron 25.0%
!! ATTTAGACTTAGTTTGGATT+AGG + chr4_3:58681944-58681963 None:intergenic 25.0%
! AATTGCATTTAGACTTAGTT+TGG + chr4_3:58681950-58681969 None:intergenic 25.0%
! ACTAAGTTTATAACTGATAG+AGG - chr4_3:58682439-58682458 Msa0651310:intron 25.0%
! TTAGTTAAAACTCATGTTCA+TGG - chr4_3:58682618-58682637 Msa0651310:intron 25.0%
!! ATTGATTTCATCGATATTTG+AGG - chr4_3:58683049-58683068 Msa0651310:CDS 25.0%
! ACATTGTGGTTATTAAAAAG+TGG - chr4_3:58683113-58683132 Msa0651310:CDS 25.0%
!! TCTATTTATAAGCACGTTTT+GGG - chr4_3:58683311-58683330 Msa0651310:intron 25.0%
!!! CGCGTTTATTTTTTACAAAA+AGG - chr4_3:58683379-58683398 Msa0651310:CDS 25.0%
!! CATAAAAACTGACTTTATTG+AGG - chr4_3:58683460-58683479 Msa0651310:CDS 25.0%
!! AAAGTATCAAACAATGAACA+TGG - chr4_3:58683496-58683515 Msa0651310:CDS 25.0%
! TATTTATTAGAGCCATGATT+TGG - chr4_3:58683674-58683693 Msa0651310:CDS 25.0%
! TAAATCAGATAACCAAATCA+TGG + chr4_3:58683689-58683708 None:intergenic 25.0%
! ATATTGTAAATCAGGCTAAT+GGG + chr4_3:58683806-58683825 None:intergenic 25.0%
! AGTAATAATCCCAAGATATA+AGG - chr4_3:58683960-58683979 Msa0651310:five_prime_UTR 25.0%
CCTTACAAATCCAATATAAC+AGG + chr4_3:58680344-58680363 None:intergenic 30.0%
CCTGTTATATTGGATTTGTA+AGG - chr4_3:58680341-58680360 Msa0651310:three_prime_UTR 30.0%
TCACCTTATCTCTTAAAACT+TGG - chr4_3:58680385-58680404 Msa0651310:three_prime_UTR 30.0%
ATGAAGAATTGGACAAGATT+AGG - chr4_3:58680642-58680661 Msa0651310:intron 30.0%
AATGGTTTAGAGAAGGAAAA+AGG - chr4_3:58680785-58680804 Msa0651310:CDS 30.0%
ATATCCTGTTGAGAATGTTA+GGG - chr4_3:58680808-58680827 Msa0651310:CDS 30.0%
! ATTGAAGCATCATAGACAAA+TGG + chr4_3:58680974-58680993 None:intergenic 30.0%
TGTCTATGATGCTTCAATAA+TGG - chr4_3:58680976-58680995 Msa0651310:intron 30.0%
TATGATGCTTCAATAATGGT+CGG - chr4_3:58680980-58680999 Msa0651310:intron 30.0%
!!! GAAATTTTTTACGAAGAGAG+GGG - chr4_3:58681122-58681141 Msa0651310:CDS 30.0%
!!! AAATTTTTTACGAAGAGAGG+GGG - chr4_3:58681123-58681142 Msa0651310:CDS 30.0%
! CTCATGAAATCAACTTTTGT+TGG + chr4_3:58681243-58681262 None:intergenic 30.0%
CATTATGAAACTCCACTTAA+GGG - chr4_3:58681318-58681337 Msa0651310:intron 30.0%
TTGTTACATATGCCTGTATT+TGG - chr4_3:58681382-58681401 Msa0651310:intron 30.0%
ATATTGAAGAATAGGGCATA+AGG + chr4_3:58681428-58681447 None:intergenic 30.0%
AAATAACTGAACCGTAAACA+GGG + chr4_3:58681650-58681669 None:intergenic 30.0%
!! CTAAATGCAATTTTGAAGAG+AGG - chr4_3:58681958-58681977 Msa0651310:CDS 30.0%
ATAATAGTGAATGCTGGAAA+CGG - chr4_3:58682088-58682107 Msa0651310:CDS 30.0%
TTAGAAAATTCAGCTGATCT+TGG - chr4_3:58682259-58682278 Msa0651310:intron 30.0%
AACAAAGGGAATCCAATAAA+CGG - chr4_3:58682325-58682344 Msa0651310:intron 30.0%
! TGGATTTTCCTTCAATACAA+TGG + chr4_3:58682377-58682396 None:intergenic 30.0%
ATTGTATTGAAGGAAAATCC+AGG - chr4_3:58682376-58682395 Msa0651310:intron 30.0%
AAGTTTATAACTGATAGAGG+AGG - chr4_3:58682442-58682461 Msa0651310:intron 30.0%
CATCTTATGATTGAAACATC+TGG - chr4_3:58682544-58682563 Msa0651310:intron 30.0%
TAACTAACTAACCATCATCA+AGG + chr4_3:58682597-58682616 None:intergenic 30.0%
CATCTATAAAACATTCAACG+TGG + chr4_3:58682669-58682688 None:intergenic 30.0%
! TATAATTTTCACCACCATGT+AGG + chr4_3:58682732-58682751 None:intergenic 30.0%
!! CTAAGTTCTACTGATTCATA+AGG + chr4_3:58682827-58682846 None:intergenic 30.0%
CTTATGAATCAGTAGAACTT+AGG - chr4_3:58682825-58682844 Msa0651310:intron 30.0%
AAATGCTAAAGCAAAAGGAT+CGG - chr4_3:58682871-58682890 Msa0651310:intron 30.0%
AAAGCTAGTTGAAGTTTAGT+TGG + chr4_3:58682942-58682961 None:intergenic 30.0%
! AACTAAACTTCAACTAGCTT+TGG - chr4_3:58682941-58682960 Msa0651310:intron 30.0%
CACAATGTGTCAAAATATGT+AGG + chr4_3:58683101-58683120 None:intergenic 30.0%
!!! CTACATATTTTGACACATTG+TGG - chr4_3:58683099-58683118 Msa0651310:CDS 30.0%
ATATTGATGCTCAAATGTAC+AGG - chr4_3:58683250-58683269 Msa0651310:intron 30.0%
CAAAACGTGCTTATAAATAG+AGG + chr4_3:58683312-58683331 None:intergenic 30.0%
! CTCTATTTATAAGCACGTTT+TGG - chr4_3:58683310-58683329 Msa0651310:intron 30.0%
! CTATTTATAAGCACGTTTTG+GGG - chr4_3:58683312-58683331 Msa0651310:intron 30.0%
ACTTTATTGAGGCAAATCAA+GGG - chr4_3:58683471-58683490 Msa0651310:CDS 30.0%
TATCAATTTGAGCAATGTCT+AGG + chr4_3:58683767-58683786 None:intergenic 30.0%
CATATTGTAAATCAGGCTAA+TGG + chr4_3:58683807-58683826 None:intergenic 30.0%
AACCTTGCATATTGTAAATC+AGG + chr4_3:58683814-58683833 None:intergenic 30.0%
! CTTGGGATTATTACTAGTTT+AGG + chr4_3:58683955-58683974 None:intergenic 30.0%
GTCATTCTTTGCTAGGAAAT+AGG - chr4_3:58680513-58680532 Msa0651310:CDS 35.0%
AGAAGATGAGAAACCAAGTT+TGG + chr4_3:58680552-58680571 None:intergenic 35.0%
TGCTAAGTATGATGAAGTAG+CGG - chr4_3:58680616-58680635 Msa0651310:intron 35.0%
AAGAATTGGACAAGATTAGG+AGG - chr4_3:58680645-58680664 Msa0651310:intron 35.0%
! AGGCAATATCAGAGAGTTTT+GGG - chr4_3:58680750-58680769 Msa0651310:CDS 35.0%
GGTTATCAATGGTTTAGAGA+AGG - chr4_3:58680778-58680797 Msa0651310:CDS 35.0%
GATATCCTGTTGAGAATGTT+AGG - chr4_3:58680807-58680826 Msa0651310:CDS 35.0%
TGGTTGTATGGTGTTTGATA+TGG - chr4_3:58680904-58680923 Msa0651310:intron 35.0%
GGTTGTATGGTGTTTGATAT+GGG - chr4_3:58680905-58680924 Msa0651310:intron 35.0%
ATGGTCGGTTACATAAAACT+TGG - chr4_3:58680995-58681014 Msa0651310:intron 35.0%
TTCAAACCATTACGTGTGTA+AGG + chr4_3:58681105-58681124 None:intergenic 35.0%
!!! AATTTTTTACGAAGAGAGGG+GGG - chr4_3:58681124-58681143 Msa0651310:CDS 35.0%
! TCTCCTTGATGATTTCTCTT+AGG + chr4_3:58681281-58681300 None:intergenic 35.0%
AGTGGAGTTTCATAATGCAA+AGG + chr4_3:58681315-58681334 None:intergenic 35.0%
GCATTATGAAACTCCACTTA+AGG - chr4_3:58681317-58681336 Msa0651310:intron 35.0%
CTATGGTTATTTGAGTGGTT+CGG - chr4_3:58681543-58681562 Msa0651310:CDS 35.0%
CAAATAACTGAACCGTAAAC+AGG + chr4_3:58681651-58681670 None:intergenic 35.0%
!! CTTCCTTTTAACTCATAAGC+TGG - chr4_3:58681899-58681918 Msa0651310:CDS 35.0%
ATGCCAGCTTATGAGTTAAA+AGG + chr4_3:58681905-58681924 None:intergenic 35.0%
ATTTGAATACAGCGCATTAC+AGG + chr4_3:58681995-58682014 None:intergenic 35.0%
CTACAGATAATAGTGAATGC+TGG - chr4_3:58682082-58682101 Msa0651310:CDS 35.0%
ATGAGTTTGTCACCGTTTAT+TGG + chr4_3:58682340-58682359 None:intergenic 35.0%
TACCGAAATGTCATTGACAA+AGG - chr4_3:58682490-58682509 Msa0651310:intron 35.0%
CTCCTTTGTCAATGACATTT+CGG + chr4_3:58682495-58682514 None:intergenic 35.0%
ATGATTGAAACATCTGGTCA+CGG - chr4_3:58682550-58682569 Msa0651310:intron 35.0%
GAAAACCATTTCCTTGATGA+TGG - chr4_3:58682583-58682602 Msa0651310:intron 35.0%
ACTAACCATCATCAAGGAAA+TGG + chr4_3:58682591-58682610 None:intergenic 35.0%
GAAATGGTAAGAATGAAGCT+TGG - chr4_3:58682755-58682774 Msa0651310:intron 35.0%
AACATTTCGAAACTACATCG+AGG - chr4_3:58682904-58682923 Msa0651310:intron 35.0%
!! GTGTTTTTATGTTGCTGTAC+AGG - chr4_3:58683137-58683156 Msa0651310:CDS 35.0%
! TTTTATGTTGCTGTACAGGA+AGG - chr4_3:58683141-58683160 Msa0651310:CDS 35.0%
TTTATGTTGCTGTACAGGAA+GGG - chr4_3:58683142-58683161 Msa0651310:CDS 35.0%
ATTTGAGCATCAATATGAGC+CGG + chr4_3:58683246-58683265 None:intergenic 35.0%
TGCTTATAAATAGAGGCGAA+GGG + chr4_3:58683305-58683324 None:intergenic 35.0%
!!! TTTTTTACAAAAAGGGACGG+AGG - chr4_3:58683387-58683406 Msa0651310:CDS 35.0%
! TTTTTACAAAAAGGGACGGA+GGG - chr4_3:58683388-58683407 Msa0651310:CDS 35.0%
GACTTTATTGAGGCAAATCA+AGG - chr4_3:58683470-58683489 Msa0651310:CDS 35.0%
AACAATGAACATGGACAACA+TGG - chr4_3:58683505-58683524 Msa0651310:CDS 35.0%
AGCCTGATTTACAATATGCA+AGG - chr4_3:58683809-58683828 Msa0651310:CDS 35.0%
CTTAACATTTAGCTATAGGC+AGG + chr4_3:58683931-58683950 None:intergenic 35.0%
CTGCCTATAGCTAAATGTTA+AGG - chr4_3:58683929-58683948 Msa0651310:five_prime_UTR 35.0%
AGGCCTTAACATTTAGCTAT+AGG + chr4_3:58683935-58683954 None:intergenic 35.0%
TGTTGACATATGAGACAAGA+TGG + chr4_3:58683998-58684017 None:intergenic 35.0%
GCGGCAAACAAAATCAACAA+TGG - chr4_3:58680430-58680449 Msa0651310:three_prime_UTR 40.0%
ACACACTGTCATTCTTTGCT+AGG - chr4_3:58680506-58680525 Msa0651310:exon 40.0%
TAAGTATGATGAAGTAGCGG+TGG - chr4_3:58680619-58680638 Msa0651310:intron 40.0%
AAGATTAGGAGGCTTCAGAA+TGG - chr4_3:58680656-58680675 Msa0651310:intron 40.0%
! GAGGCAATATCAGAGAGTTT+TGG - chr4_3:58680749-58680768 Msa0651310:CDS 40.0%
! GGCAATATCAGAGAGTTTTG+GGG - chr4_3:58680751-58680770 Msa0651310:CDS 40.0%
AATGTGCTCATGAAACAAGC+GGG + chr4_3:58680944-58680963 None:intergenic 40.0%
CAATGTGCTCATGAAACAAG+CGG + chr4_3:58680945-58680964 None:intergenic 40.0%
! GAAGCATCATAGACAAATGG+AGG + chr4_3:58680971-58680990 None:intergenic 40.0%
CATTTGCCTTACACACGTAA+TGG - chr4_3:58681096-58681115 Msa0651310:CDS 40.0%
TTTAAGCAGAGTAGACACTC+TGG + chr4_3:58681214-58681233 None:intergenic 40.0%
GCACCTAAGAGAAATCATCA+AGG - chr4_3:58681275-58681294 Msa0651310:intron 40.0%
AACTCCACTTAAGGGATTTC+AGG - chr4_3:58681326-58681345 Msa0651310:intron 40.0%
CAAACCTGAAATCCCTTAAG+TGG + chr4_3:58681333-58681352 None:intergenic 40.0%
AAGAATAGGGCATAAGGCAA+GGG + chr4_3:58681422-58681441 None:intergenic 40.0%
GGAACTACGGCATTTATGAT+AGG - chr4_3:58681460-58681479 Msa0651310:CDS 40.0%
AATTAGCAATGCCTGCACTA+TGG - chr4_3:58681526-58681545 Msa0651310:CDS 40.0%
CACTCAAATAACCATAGTGC+AGG + chr4_3:58681540-58681559 None:intergenic 40.0%
CTGCACTATGGTTATTTGAG+TGG - chr4_3:58681538-58681557 Msa0651310:CDS 40.0%
! CTGCTTTAAACCACTAGAAC+CGG + chr4_3:58681582-58681601 None:intergenic 40.0%
CAGTTTAACCATGACTCAGA+CGG - chr4_3:58681599-58681618 Msa0651310:intron 40.0%
CCATGAATTGACCCTGTTTA+CGG - chr4_3:58681636-58681655 Msa0651310:intron 40.0%
TTTCCTTCTCTATGAGTGAG+TGG + chr4_3:58681791-58681810 None:intergenic 40.0%
CATAAGCTGGCATAAAGCAT+AGG - chr4_3:58681912-58681931 Msa0651310:CDS 40.0%
TACGATGTCTTAGACAAGCT+TGG - chr4_3:58682130-58682149 Msa0651310:CDS 40.0%
TGATTAGGAAACATGCCATC+AGG + chr4_3:58682187-58682206 None:intergenic 40.0%
! TGCTTTTCTTGTCATTGCCA+TGG + chr4_3:58682236-58682255 None:intergenic 40.0%
TGACAAACTCATTGCTCTCA+TGG - chr4_3:58682348-58682367 Msa0651310:intron 40.0%
AACCAACGCGGTATAAACAA+TGG + chr4_3:58682471-58682490 None:intergenic 40.0%
CAAAGGAGTTCAGCTTAACA+AGG - chr4_3:58682507-58682526 Msa0651310:intron 40.0%
ATATAATGAAGGGGCCTACA+TGG - chr4_3:58682715-58682734 Msa0651310:intron 40.0%
ATGGTAAGAATGAAGCTTGG+TGG - chr4_3:58682758-58682777 Msa0651310:intron 40.0%
TGCTTTAGCATTTCGAGGTT+CGG + chr4_3:58682864-58682883 None:intergenic 40.0%
! CCTTTTGCTTTAGCATTTCG+AGG + chr4_3:58682869-58682888 None:intergenic 40.0%
CCTCGAAATGCTAAAGCAAA+AGG - chr4_3:58682866-58682885 Msa0651310:intron 40.0%
TAGACTCATGTGGTGATTGT+TGG - chr4_3:58683184-58683203 Msa0651310:CDS 40.0%
AGACTCATGTGGTGATTGTT+GGG - chr4_3:58683185-58683204 Msa0651310:CDS 40.0%
!! GGGTGTCATTTGTATCAACA+AGG + chr4_3:58683224-58683243 None:intergenic 40.0%
TGTTGATACAAATGACACCC+CGG - chr4_3:58683224-58683243 Msa0651310:CDS 40.0%
TTTGAGCATCAATATGAGCC+GGG + chr4_3:58683245-58683264 None:intergenic 40.0%
GTGCTTATAAATAGAGGCGA+AGG + chr4_3:58683306-58683325 None:intergenic 40.0%
!!! TTTATAAGCACGTTTTGGGG+AGG - chr4_3:58683315-58683334 Msa0651310:intron 40.0%
ATGAACATGGACAACATGGT+TGG - chr4_3:58683509-58683528 Msa0651310:CDS 40.0%
TGAACATGGACAACATGGTT+GGG - chr4_3:58683510-58683529 Msa0651310:CDS 40.0%
GCAAGTTCACAGCAATGTTT+GGG + chr4_3:58683561-58683580 None:intergenic 40.0%
TGCAAGTTCACAGCAATGTT+TGG + chr4_3:58683562-58683581 None:intergenic 40.0%
AACTTGCAATCATCTGCTCA+AGG - chr4_3:58683574-58683593 Msa0651310:CDS 40.0%
! TGCAGTTTTCTCAAAGCAAG+TGG - chr4_3:58683729-58683748 Msa0651310:CDS 40.0%
AGTAGCGGTGGATGAAGAAT+TGG - chr4_3:58680631-58680650 Msa0651310:intron 45.0%
TAGGAGGCTTCAGAATGGTT+CGG - chr4_3:58680661-58680680 Msa0651310:intron 45.0%
! CAGAATGGTTCGGATGTTAG+AGG - chr4_3:58680671-58680690 Msa0651310:intron 45.0%
GGATGTTAGAGGAGTTGCAT+TGG - chr4_3:58680682-58680701 Msa0651310:intron 45.0%
GTTAGAGGAGTTGCATTGGA+AGG - chr4_3:58680686-58680705 Msa0651310:intron 45.0%
ACTCTCTGATATTGCCTCCA+CGG + chr4_3:58680747-58680766 None:intergenic 45.0%
!!! TATCAGAGAGTTTTGGGGAG+TGG - chr4_3:58680756-58680775 Msa0651310:CDS 45.0%
!!! ATCAGAGAGTTTTGGGGAGT+GGG - chr4_3:58680757-58680776 Msa0651310:CDS 45.0%
!! TTTGGGGAGTGGGTTATCAA+TGG - chr4_3:58680767-58680786 Msa0651310:CDS 45.0%
GACACCCTAACATTCTCAAC+AGG + chr4_3:58680815-58680834 None:intergenic 45.0%
! GAGAATGTTAGGGTGTCTCT+TGG - chr4_3:58680818-58680837 Msa0651310:intron 45.0%
ATTTAGACCCTGTGACTCGA+GGG + chr4_3:58680850-58680869 None:intergenic 45.0%
AATTTAGACCCTGTGACTCG+AGG + chr4_3:58680851-58680870 None:intergenic 45.0%
! TTGAGTGTTGCAGTGTTTGC+CGG - chr4_3:58680869-58680888 Msa0651310:intron 45.0%
GAAGAATAGGGCATAAGGCA+AGG + chr4_3:58681423-58681442 None:intergenic 45.0%
! GTGCAGGCATTGCTAATTCA+TGG + chr4_3:58681524-58681543 None:intergenic 45.0%
CATGACTCAGACGGTTCAAT+CGG - chr4_3:58681608-58681627 Msa0651310:intron 45.0%
CCGTAAACAGGGTCAATTCA+TGG + chr4_3:58681639-58681658 None:intergenic 45.0%
! GAGCGATCACAGTTTCGTTT+TGG - chr4_3:58681670-58681689 Msa0651310:intron 45.0%
ACATGACCTAGAGGTCTCAT+TGG - chr4_3:58681712-58681731 Msa0651310:intron 45.0%
ATCCAACCAATGAGACCTCT+AGG + chr4_3:58681721-58681740 None:intergenic 45.0%
! GGTCTCATTGGTTGGATGTT+CGG - chr4_3:58681724-58681743 Msa0651310:CDS 45.0%
TCTCCACTCACTCATAGAGA+AGG - chr4_3:58681785-58681804 Msa0651310:CDS 45.0%
!! AAGCTTGGTGCAGATACCTT+TGG - chr4_3:58682145-58682164 Msa0651310:CDS 45.0%
! TTTGAGATGCAGAGAGCCAA+AGG + chr4_3:58682164-58682183 None:intergenic 45.0%
TCTCTGCATCTCAAACCTGA+TGG - chr4_3:58682169-58682188 Msa0651310:CDS 45.0%
TCGGGATTGGGAATGTGATT+AGG + chr4_3:58682202-58682221 None:intergenic 45.0%
TAATCACATTCCCAATCCCG+AGG - chr4_3:58682201-58682220 Msa0651310:CDS 45.0%
! GCAATTTTGTCCTCGGGATT+GGG + chr4_3:58682214-58682233 None:intergenic 45.0%
! TGCCATGGCAATTTTGTCCT+CGG + chr4_3:58682221-58682240 None:intergenic 45.0%
GATACCGATGTTGACAGAAG+CGG - chr4_3:58682292-58682311 Msa0651310:intron 45.0%
CATGGCTGCCATTGTATTGA+AGG - chr4_3:58682366-58682385 Msa0651310:intron 45.0%
TCGGTTACTATGGTTGATCC+TGG + chr4_3:58682397-58682416 None:intergenic 45.0%
!! TGTACGAGCATCGGTTACTA+TGG + chr4_3:58682407-58682426 None:intergenic 45.0%
CACCATTGTTTATACCGCGT+TGG - chr4_3:58682466-58682485 Msa0651310:intron 45.0%
TGACATTTCGGTAACCAACG+CGG + chr4_3:58682483-58682502 None:intergenic 45.0%
AGGAGTTCAGCTTAACAAGG+AGG - chr4_3:58682510-58682529 Msa0651310:intron 45.0%
GGAGTTCAGCTTAACAAGGA+GGG - chr4_3:58682511-58682530 Msa0651310:intron 45.0%
! AAGCTTGGTGGATCAGATGA+AGG - chr4_3:58682770-58682789 Msa0651310:intron 45.0%
! AGCTTGGTGGATCAGATGAA+GGG - chr4_3:58682771-58682790 Msa0651310:intron 45.0%
TGCTAAAGCAAAAGGATCGG+AGG - chr4_3:58682874-58682893 Msa0651310:intron 45.0%
TACAGGAAGGGAGGCTTAAA+GGG - chr4_3:58683154-58683173 Msa0651310:CDS 45.0%
GTGATTGTTGGGTGAGTGAA+GGG - chr4_3:58683196-58683215 Msa0651310:CDS 45.0%
TTGAGCATCAATATGAGCCG+GGG + chr4_3:58683244-58683263 None:intergenic 45.0%
AACATGGTTGGGTACACATG+AGG - chr4_3:58683521-58683540 Msa0651310:CDS 45.0%
TTGCAATCATCTGCTCAAGG+AGG - chr4_3:58683577-58683596 Msa0651310:CDS 45.0%
TCAAGGAGGTTGCTTGTCAA+TGG - chr4_3:58683591-58683610 Msa0651310:CDS 45.0%
GTTGCATTGGAAGGCGAGAA+AGG - chr4_3:58680695-58680714 Msa0651310:CDS 50.0%
!! TCTTGCTCGTGCTGGTTGTA+TGG - chr4_3:58680892-58680911 Msa0651310:intron 50.0%
! CACTTTCGTTCCGGTTCTAG+TGG - chr4_3:58681569-58681588 Msa0651310:CDS 50.0%
CGATTGAACCGTCTGAGTCA+TGG + chr4_3:58681610-58681629 None:intergenic 50.0%
GACCTAGAGGTCTCATTGGT+TGG - chr4_3:58681716-58681735 Msa0651310:intron 50.0%
GTGAATGCTGGAAACGGTTC+AGG - chr4_3:58682094-58682113 Msa0651310:CDS 50.0%
AATGCTGGAAACGGTTCAGG+AGG - chr4_3:58682097-58682116 Msa0651310:CDS 50.0%
! GGCAATTTTGTCCTCGGGAT+TGG + chr4_3:58682215-58682234 None:intergenic 50.0%
TCCCGAGGACAAAATTGCCA+TGG - chr4_3:58682216-58682235 Msa0651310:CDS 50.0%
! GCCATGGCAATTTTGTCCTC+GGG + chr4_3:58682220-58682239 None:intergenic 50.0%
!! AGCGGCGTGGTTGATAACAA+AGG - chr4_3:58682310-58682329 Msa0651310:intron 50.0%
!! GCGGCGTGGTTGATAACAAA+GGG - chr4_3:58682311-58682330 Msa0651310:intron 50.0%
CGACATGCTTGTACGAGCAT+CGG + chr4_3:58682416-58682435 None:intergenic 50.0%
TAATGAAGGGGCCTACATGG+TGG - chr4_3:58682718-58682737 Msa0651310:intron 50.0%
GGTGGATCAGATGAAGGGAT+TGG - chr4_3:58682776-58682795 Msa0651310:intron 50.0%
ATGTTGCTGTACAGGAAGGG+AGG - chr4_3:58683145-58683164 Msa0651310:CDS 50.0%
GTACAGGAAGGGAGGCTTAA+AGG - chr4_3:58683153-58683172 Msa0651310:CDS 50.0%
GGTGATTGTTGGGTGAGTGA+AGG - chr4_3:58683195-58683214 Msa0651310:CDS 50.0%
TCTGATATTGCCTCCACGGC+AGG + chr4_3:58680743-58680762 None:intergenic 55.0%
ACAACCAGCACGAGCAAGAC+CGG + chr4_3:58680891-58680910 None:intergenic 55.0%
GTTCGGTCGCACTTTCGTTC+CGG - chr4_3:58681560-58681579 Msa0651310:CDS 55.0%
CACGCCGCTTCTGTCAACAT+CGG + chr4_3:58682299-58682318 None:intergenic 55.0%
AGGAAGGGAGGCTTAAAGGG+TGG - chr4_3:58683157-58683176 Msa0651310:CDS 55.0%
GGAAGGGAGGCTTAAAGGGT+GGG - chr4_3:58683158-58683177 Msa0651310:CDS 55.0%
GGGTGGGAGTTAGACTCATG+TGG - chr4_3:58683174-58683193 Msa0651310:CDS 55.0%
!! AGGGACGGAGGGAGTATTCT+AGG - chr4_3:58683399-58683418 Msa0651310:CDS 55.0%
GATATTGCCTCCACGGCAGG+AGG + chr4_3:58680740-58680759 None:intergenic 60.0%
TTTGCCGGTCTTGCTCGTGC+TGG - chr4_3:58680884-58680903 Msa0651310:intron 60.0%
CGATGTTGACAGAAGCGGCG+TGG - chr4_3:58682297-58682316 Msa0651310:intron 60.0%
CGACCTTACTCCTCCTGCCG+TGG - chr4_3:58680727-58680746 Msa0651310:CDS 65.0%
CCTCCACGGCAGGAGGAGTA+AGG + chr4_3:58680733-58680752 None:intergenic 65.0%
CCTTACTCCTCCTGCCGTGG+AGG - chr4_3:58680730-58680749 Msa0651310:CDS 65.0%
GACGCGACCCTCGAGTCACA+GGG - chr4_3:58680840-58680859 Msa0651310:intron 65.0%
! GAGAGGGGGGCTGACTTCAC+TGG - chr4_3:58681137-58681156 Msa0651310:CDS 65.0%
! AGGGGGGCTGACTTCACTGG+AGG - chr4_3:58681140-58681159 Msa0651310:CDS 65.0%
GGACGCGACCCTCGAGTCAC+AGG - chr4_3:58680839-58680858 Msa0651310:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58680306 58684021 58680306 ID=Msa0651310;Name=Msa0651310
chr4_3 mRNA 58680306 58684021 58680306 ID=Msa0651310-mRNA-1;Parent=Msa0651310;Name=Msa0651310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=143|1|1|1|1|1|7|206|621
chr4_3 exon 58680306 58680593 58680306 ID=Msa0651310-mRNA-1:exon:15555;Parent=Msa0651310-mRNA-1
chr4_3 exon 58680695 58680835 58680695 ID=Msa0651310-mRNA-1:exon:15554;Parent=Msa0651310-mRNA-1
chr4_3 exon 58681056 58681168 58681056 ID=Msa0651310-mRNA-1:exon:15553;Parent=Msa0651310-mRNA-1
chr4_3 exon 58681402 58681601 58681402 ID=Msa0651310-mRNA-1:exon:15552;Parent=Msa0651310-mRNA-1
chr4_3 exon 58681723 58682239 58681723 ID=Msa0651310-mRNA-1:exon:15551;Parent=Msa0651310-mRNA-1
chr4_3 exon 58682980 58683243 58682980 ID=Msa0651310-mRNA-1:exon:15550;Parent=Msa0651310-mRNA-1
chr4_3 exon 58683330 58684021 58683330 ID=Msa0651310-mRNA-1:exon:15549;Parent=Msa0651310-mRNA-1
chr4_3 five_prime_UTR 58683879 58684021 58683879 ID=Msa0651310-mRNA-1:five_prime_utr;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58683330 58683878 58683330 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58682980 58683243 58682980 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58681723 58682239 58681723 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58681402 58681601 58681402 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58681056 58681168 58681056 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58680695 58680835 58680695 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 CDS 58680512 58680593 58680512 ID=Msa0651310-mRNA-1:cds;Parent=Msa0651310-mRNA-1
chr4_3 three_prime_UTR 58680306 58680511 58680306 ID=Msa0651310-mRNA-1:three_prime_utr;Parent=Msa0651310-mRNA-1
Gene Sequence

>Msa0651310

ATGGCTGCTTCTACTTCAGCAAAATTCTCATCATCTTTGCACAGAAATACAAAGAAAACACACTGTCATTCTTTGCTAGGAAATAGGATATTTTTGCAAACCAAACTTGGTTTCTCATCTTCTGTGCCATTCAATAAATCTGTAATAAGTGTGAAATGTTATGGAACTGCTAAGTATGATGAAGTAGCGGTGGATGAAGAATTGGACAAGATTAGGAGGCTTCAGAATGGTTCGGATGTTAGAGGAGTTGCATTGGAAGGCGAGAAAGGAAGAACAGTCGACCTTACTCCTCCTGCCGTGGAGGCAATATCAGAGAGTTTTGGGGAGTGGGTTATCAATGGTTTAGAGAAGGAAAAAGGATATCCTGTTGAGAATGTTAGGGTGTCTCTTGGACGCGACCCTCGAGTCACAGGGTCTAAATTGAGTGTTGCAGTGTTTGCCGGTCTTGCTCGTGCTGGTTGTATGGTGTTTGATATGGGACTAGCTACGACGCCCGCTTGTTTCATGAGCACATTGTTGCCTCCATTTGTCTATGATGCTTCAATAATGATGACGGCATCTCATTTGCCTTACACACGTAATGGTTTGAAATTTTTTACGAAGAGAGGGGGGCTGACTTCACTGGAGGTAGAAGAAGTGTGTGACAAAGCTGCTCGTAAATATGCAAATAGATTGGCCAGAGTGTCTACTCTGCTTAAAGTTCTTCCAACAAAAGTTGATTTCATGAGTGCTTATTCAAAGCACCTAAGAGAAATCATCAAGGAGAGAATAAGTCATCCTTTGCATTATGAAACTCCACTTAAGGGATTTCAGATAATAGTGAATGCTGGAAACGGTTCAGGAGGATTCTTCACATACGATGTCTTAGACAAGCTTGGTGCAGATACCTTTGGCTCTCTGCATCTCAAACCTGATGGCATGTTTCCTAATCACATTCCCAATCCCGAGGACAAAATTGCCATGGCAATGACAAGAAAAGCAGTGTTAGAAAATTCAGCTGATCTTGGAATAGTCTTTGATACCGATGTTGACAGAAGCGGCGTGGTTGATAACAAAGGGAATCCAATAAACGGTGACAAACTCATTGCTCTCATGGCTGCCATTGTATTGAAGGAAAATCCAGGATCAACCATAGTAACCGATGCTCGTACAAGCATGTCGCTCACTAAGTTTATAACTGATAGAGGAGGTCACCATTGTTTATACCGCGTTGGTTACCGAAATGTCATTGACAAAGGAGTTCAGCTTAACAAGGAGGGAATTGAAACACATCTTATGATTGAAACATCTGGTCACGGTGCTTTGAAAGAAAACCATTTCCTTGATGATGGGGCCTACATGGTGGTGAAAATTATAATTGAAATGGTAAGAATGAAGCTTGGTGGATCAGATGAAGGGATTGGTAGTCTTATAAAAGATCTTGAAGAGCCTTATGAATCAGTAGAACTTAGGATAAATATCATTTCCGAACCTCGAAATGCTAAAGCAAAAGGATCGGAGGCACTCGAAACATTTCGAAACTACATCGAGGAAGGGAGGCTTAAAGGGTGGGAGTTAGACTCATGTGGTGATTGTTGGGTGAGTGAAGGGTGCCTTGTTGATACAAATGACACCCCGGCTCATATTGATGCTCAAATGTACAGGGCAAAAGTATCAAACAATGAACATGGACAACATGGTTGGGTACACATGAGGCAGAGTATTCACAACCCAAACATTGCTGTGAACTTGCAATCATCTGCTCAAGGAGGTTGCTTGTCAATGGCAAGAGCTTTCAGAGATGATTTTCTCAAAGCAAGTGGAGTTGATACATTCCTAGACATTGCTCAAATTGATAAGTTTGTTGAAAATGGCCCATTAGCCTGA

Protein sequence

>Msa0651310

MAASTSAKFSSSLHRNTKKTHCHSLLGNRIFLQTKLGFSSSVPFNKSVISVKCYGTAKYDEVAVDEELDKIRRLQNGSDVRGVALEGEKGRTVDLTPPAVEAISESFGEWVINGLEKEKGYPVENVRVSLGRDPRVTGSKLSVAVFAGLARAGCMVFDMGLATTPACFMSTLLPPFVYDASIMMTASHLPYTRNGLKFFTKRGGLTSLEVEEVCDKAARKYANRLARVSTLLKVLPTKVDFMSAYSKHLREIIKERISHPLHYETPLKGFQIIVNAGNGSGGFFTYDVLDKLGADTFGSLHLKPDGMFPNHIPNPEDKIAMAMTRKAVLENSADLGIVFDTDVDRSGVVDNKGNPINGDKLIALMAAIVLKENPGSTIVTDARTSMSLTKFITDRGGHHCLYRVGYRNVIDKGVQLNKEGIETHLMIETSGHGALKENHFLDDGAYMVVKIIIEMVRMKLGGSDEGIGSLIKDLEEPYESVELRINIISEPRNAKAKGSEALETFRNYIEEGRLKGWELDSCGDCWVSEGCLVDTNDTPAHIDAQMYRAKVSNNEHGQHGWVHMRQSIHNPNIAVNLQSSAQGGCLSMARAFRDDFLKASGVDTFLDIAQIDKFVENGPLA*