AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0538520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538520 MtrunA17_Chr4g0013171 94.888 313 16 0 1 313 9 321 0.0 622
Msa0538520 MtrunA17_Chr4g0013181 89.041 292 32 0 22 313 62 353 0.0 552
Msa0538520 MtrunA17_Chr5g0432331 60.252 317 120 4 1 313 38 352 3.29e-134 385
Msa0538520 MtrunA17_Chr5g0432341 60.703 313 117 4 5 313 11 321 4.26e-133 380
Msa0538520 MtrunA17_Chr5g0432441 61.392 316 118 2 1 313 12 326 1.15e-132 380
Msa0538520 MtrunA17_Chr5g0432351 59.744 313 120 4 5 313 11 321 5.38e-132 378
Msa0538520 MtrunA17_Chr3g0106921 58.599 314 126 3 3 313 8 320 6.02e-125 360
Msa0538520 MtrunA17_Chr3g0114451 58.413 315 126 3 2 313 6 318 1.29e-124 359
Msa0538520 MtrunA17_Chr3g0107881 57.413 317 129 4 2 313 9 324 9.31e-123 354
Msa0538520 MtrunA17_Chr3g0129051 55.096 314 137 3 2 313 11 322 5.69e-121 350
Msa0538520 MtrunA17_Chr5g0438021 55.591 313 134 4 3 313 16 325 1.65e-120 349
Msa0538520 MtrunA17_Chr7g0244461 57.966 295 122 2 19 313 20 312 3.09e-119 345
Msa0538520 MtrunA17_Chr2g0320061 55.096 314 138 3 1 313 7 318 2.95e-118 343
Msa0538520 MtrunA17_Chr4g0013201 55.195 308 136 2 6 313 33 338 5.73e-118 343
Msa0538520 MtrunA17_Chr7g0244451 57.468 308 129 2 6 313 11 316 5.86e-118 342
Msa0538520 MtrunA17_Chr2g0320031 55.238 315 137 4 1 313 7 319 3.84e-117 340
Msa0538520 MtrunA17_Chr2g0320071 53.355 313 144 2 1 313 7 317 4.88e-116 337
Msa0538520 MtrunA17_Chr2g0320101 53.355 313 144 2 1 313 7 317 2.89e-115 335
Msa0538520 MtrunA17_Chr4g0043391 54.403 318 138 5 1 313 9 324 9.14e-115 334
Msa0538520 MtrunA17_Chr3g0106901 55.911 313 136 2 1 313 13 323 1.30e-114 334
Msa0538520 MtrunA17_Chr2g0320051 53.822 314 142 3 1 313 7 318 2.86e-114 333
Msa0538520 MtrunA17_Chr3g0129041 57.051 312 129 4 5 313 13 322 1.10e-113 331
Msa0538520 MtrunA17_Chr3g0129061 57.576 297 122 3 19 313 28 322 1.22e-113 331
Msa0538520 MtrunA17_Chr4g0038161 54.839 310 134 4 8 313 13 320 2.35e-113 330
Msa0538520 MtrunA17_Chr2g0320091 52.866 314 145 3 1 313 7 318 3.09e-113 330
Msa0538520 MtrunA17_Chr4g0038151 53.674 313 138 5 6 313 11 321 1.54e-112 328
Msa0538520 MtrunA17_Chr4g0038171 53.674 313 138 5 6 313 11 321 4.99e-112 327
Msa0538520 MtrunA17_Chr4g0013191 55.631 293 126 3 23 313 50 340 6.13e-111 325
Msa0538520 MtrunA17_Chr5g0404721 55.116 303 126 4 19 313 30 330 1.51e-110 324
Msa0538520 MtrunA17_Chr7g0224371 53.035 313 144 3 1 313 13 322 1.18e-108 318
Msa0538520 MtrunA17_Chr8g0372601 54.098 305 130 4 17 313 28 330 2.51e-108 318
Msa0538520 MtrunA17_Chr1g0213061 51.125 311 146 4 6 313 14 321 1.17e-107 316
Msa0538520 MtrunA17_Chr1g0155611 50.820 305 139 4 18 313 45 347 9.21e-102 302
Msa0538520 MtrunA17_Chr5g0432401 50.158 317 110 6 3 312 10 285 1.14e-101 300
Msa0538520 MtrunA17_Chr4g0068621 49.837 307 146 4 13 313 32 336 5.04e-99 295
Msa0538520 MtrunA17_Chr4g0070951 49.536 323 148 5 2 313 11 329 1.87e-98 293
Msa0538520 MtrunA17_Chr7g0258811 47.799 318 154 5 6 313 56 371 1.38e-97 292
Msa0538520 MtrunA17_Chr1g0175561 47.059 323 155 6 1 313 10 326 1.72e-97 290
Msa0538520 MtrunA17_Chr5g0400331 51.456 309 133 5 19 313 26 331 6.84e-97 289
Msa0538520 MtrunA17_Chr2g0291751 49.530 319 148 5 5 313 15 330 3.01e-96 288
Msa0538520 MtrunA17_Chr2g0299691 49.837 307 138 5 19 313 56 358 5.22e-96 288
Msa0538520 MtrunA17_Chr5g0402571 46.417 321 161 4 1 313 9 326 2.86e-95 285
Msa0538520 MtrunA17_Chr2g0292151 47.484 318 156 4 5 313 15 330 1.38e-94 284
Msa0538520 MtrunA17_Chr2g0292271 47.205 322 157 5 3 313 11 330 1.92e-94 283
Msa0538520 MtrunA17_Chr2g0292181 47.484 318 156 4 5 313 24 339 1.04e-93 282
Msa0538520 MtrunA17_Chr2g0292211 47.188 320 158 4 3 313 24 341 1.51e-93 281
Msa0538520 MtrunA17_Chr5g0402581 45.794 321 163 4 1 313 9 326 1.84e-93 280
Msa0538520 MtrunA17_Chr2g0292241 47.170 318 157 4 5 313 15 330 3.75e-93 280
Msa0538520 MtrunA17_Chr2g0292261 47.484 318 156 4 5 313 15 330 1.53e-92 279
Msa0538520 MtrunA17_Chr2g0292251 48.026 304 147 4 19 313 28 329 1.03e-91 276
Msa0538520 MtrunA17_Chr2g0292091 45.714 315 158 5 9 313 14 325 5.33e-91 275
Msa0538520 MtrunA17_Chr2g0292111 46.226 318 160 4 5 313 15 330 5.36e-90 272
Msa0538520 MtrunA17_Chr2g0292291 45.455 319 162 5 5 313 16 332 1.18e-88 269
Msa0538520 MtrunA17_Chr4g0013721 46.926 309 152 5 12 313 93 396 2.10e-87 268
Msa0538520 MtrunA17_Chr2g0292101 45.455 319 161 5 5 313 11 326 2.79e-86 262
Msa0538520 MtrunA17_Chr5g0421411 49.310 290 127 8 39 313 1 285 1.78e-85 258
Msa0538520 MtrunA17_Chr4g0013821 44.375 320 164 6 1 313 12 324 1.14e-84 258
Msa0538520 MtrunA17_Chr2g0322861 42.991 321 170 7 2 313 70 386 5.26e-84 258
Msa0538520 MtrunA17_Chr8g0371381 42.857 308 161 7 13 313 20 319 3.69e-79 243
Msa0538520 MtrunA17_Chr6g0477071 39.683 315 176 7 6 313 35 342 9.41e-79 243
Msa0538520 MtrunA17_Chr1g0194151 43.789 322 166 6 5 313 14 333 1.58e-78 242
Msa0538520 MtrunA17_Chr5g0405991 41.693 319 170 8 2 313 7 316 1.33e-77 239
Msa0538520 MtrunA17_Chr1g0204011 43.564 303 156 8 19 313 27 322 2.09e-77 239
Msa0538520 MtrunA17_Chr1g0194271 43.636 330 162 7 5 313 14 340 1.44e-76 238
Msa0538520 MtrunA17_Chr1g0188431 41.554 296 165 6 19 313 39 327 2.52e-76 236
Msa0538520 MtrunA17_Chr3g0128061 40.506 316 178 4 6 313 13 326 5.55e-76 235
Msa0538520 MtrunA17_Chr7g0225221 40.810 321 176 7 1 313 6 320 9.59e-76 234
Msa0538520 MtrunA17_Chr4g0024121 39.873 316 179 5 6 313 14 326 1.19e-75 234
Msa0538520 MtrunA17_Chr2g0279041 40.615 325 174 7 1 313 8 325 1.55e-74 232
Msa0538520 MtrunA17_Chr1g0157051 41.456 316 170 7 1 309 7 314 2.45e-74 231
Msa0538520 MtrunA17_Chr7g0254231 40.878 296 168 5 19 313 22 311 3.10e-73 228
Msa0538520 MtrunA17_Chr1g0148021 42.020 307 165 7 17 313 25 328 1.28e-72 227
Msa0538520 MtrunA17_Chr3g0114461 57.672 189 78 2 126 313 5 192 1.97e-71 219
Msa0538520 MtrunA17_Chr1g0164891 42.053 302 162 6 23 313 93 392 4.36e-71 225
Msa0538520 MtrunA17_Chr6g0460711 37.421 318 183 7 1 313 8 314 5.76e-70 220
Msa0538520 MtrunA17_Chr4g0063671 40.312 320 172 6 6 313 8 320 6.00e-70 220
Msa0538520 MtrunA17_Chr7g0268501 38.413 315 181 6 6 313 12 320 1.43e-67 214
Msa0538520 MtrunA17_Chr7g0268521 38.413 315 181 6 6 313 12 320 1.43e-67 214
Msa0538520 MtrunA17_Chr7g0254201 37.624 303 177 5 16 313 17 312 2.42e-67 213
Msa0538520 MtrunA17_Chr4g0076211 40.468 299 160 7 23 313 45 333 6.92e-67 213
Msa0538520 MtrunA17_Chr2g0296621 42.244 303 156 8 19 313 50 341 8.23e-67 213
Msa0538520 MtrunA17_Chr6g0467161 40.067 297 171 6 19 313 45 336 1.12e-66 212
Msa0538520 MtrunA17_Chr2g0278671 40.909 308 165 6 17 313 22 323 2.03e-66 211
Msa0538520 MtrunA17_Chr4g0053871 38.710 310 183 5 5 309 13 320 2.34e-66 211
Msa0538520 MtrunA17_Chr1g0197411 38.558 319 183 7 6 313 14 330 7.43e-66 210
Msa0538520 MtrunA17_Chr4g0046131 40.635 315 173 7 7 309 30 342 1.05e-65 210
Msa0538520 MtrunA17_Chr5g0401431 37.377 305 179 5 15 309 23 325 1.82e-65 208
Msa0538520 MtrunA17_Chr4g0072091 39.145 304 172 6 19 313 24 323 6.41e-65 207
Msa0538520 MtrunA17_Chr2g0329641 39.185 319 175 7 7 313 24 335 3.23e-64 206
Msa0538520 MtrunA17_Chr8g0364291 36.164 318 192 5 5 313 9 324 5.23e-62 199
Msa0538520 MtrunA17_Chr2g0316791 38.024 334 165 8 17 311 74 404 1.25e-61 201
Msa0538520 MtrunA17_Chr6g0467251 38.047 297 178 5 19 313 36 328 1.65e-61 199
Msa0538520 MtrunA17_Chr6g0451571 35.514 321 194 7 1 313 19 334 2.67e-60 195
Msa0538520 MtrunA17_Chr2g0316481 37.425 334 167 8 17 311 74 404 3.64e-60 197
Msa0538520 MtrunA17_Chr2g0316831 37.425 334 167 8 17 311 110 440 7.90e-60 197
Msa0538520 MtrunA17_Chr6g0467121 36.624 314 190 6 2 313 57 363 1.82e-59 195
Msa0538520 MtrunA17_Chr2g0316191 37.313 335 167 8 17 311 74 405 1.87e-59 195
Msa0538520 MtrunA17_Chr2g0279061 43.130 262 131 6 63 313 12 266 2.58e-59 191
Msa0538520 MtrunA17_Chr3g0136751 37.267 322 187 4 1 313 7 322 3.68e-57 187
Msa0538520 MtrunA17_Chr4g0075241 34.219 301 190 4 19 313 29 327 7.13e-57 186
Msa0538520 MtrunA17_Chr2g0311251 36.418 335 170 9 17 312 9 339 3.83e-55 182
Msa0538520 MtrunA17_Chr2g0311241 32.746 397 176 11 3 312 37 429 7.45e-53 179
Msa0538520 MtrunA17_Chr1g0181431 34.653 303 190 5 16 313 24 323 2.43e-52 174
Msa0538520 MtrunA17_Chr1g0181511 35.762 302 186 5 17 313 25 323 3.17e-52 174
Msa0538520 MtrunA17_Chr1g0181481 35.762 302 186 5 17 313 25 323 4.37e-52 174
Msa0538520 MtrunA17_Chr4g0074851 34.437 302 190 5 17 313 30 328 8.95e-52 173
Msa0538520 MtrunA17_Chr5g0413051 32.248 307 194 6 19 313 73 377 1.05e-49 169
Msa0538520 MtrunA17_Chr2g0292281 43.868 212 97 5 112 313 17 216 2.74e-46 156
Msa0538520 MtrunA17_Chr5g0432321 61.864 118 43 2 141 258 17 132 8.13e-43 144
Msa0538520 MtrunA17_Chr3g0114491 64.545 110 38 1 19 128 18 126 1.02e-40 139
Msa0538520 MtrunA17_Chr2g0316141 36.059 269 147 8 65 311 11 276 7.93e-38 135
Msa0538520 MtrunA17_Chr2g0316181 36.059 269 147 8 65 311 11 276 7.93e-38 135
Msa0538520 MtrunA17_Chr4g0004591 28.037 321 162 6 19 312 77 355 3.80e-37 135
Msa0538520 MtrunA17_Chr2g0316811 32.986 288 136 9 17 250 48 332 1.32e-35 131
Msa0538520 MtrunA17_Chr3g0104101 45.139 144 61 6 185 313 9 149 1.00e-27 105
Msa0538520 MtrunA17_Chr5g0432361 49.462 93 44 2 222 312 17 108 1.76e-23 92.8
Msa0538520 MtrunA17_Chr1g0181501 31.746 189 122 4 130 313 3 189 9.52e-23 93.6
Msa0538520 MtrunA17_Chr2g0316771 30.682 176 85 3 171 309 7 182 1.09e-19 85.1
Msa0538520 MtrunA17_Chr6g0468731 56.338 71 26 3 58 128 22 87 1.65e-16 73.6
Msa0538520 MtrunA17_Chr1g0181491 39.286 112 63 4 17 127 10 117 8.82e-16 73.2
Msa0538520 MtrunA17_Chr4g0013811 50.000 74 36 1 131 204 6 78 9.65e-16 71.2
Msa0538520 MtrunA17_Chr7g0254181 38.318 107 60 3 81 187 22 122 1.63e-15 72.8
Msa0538520 MtrunA17_Chr3g0124821 28.846 260 142 11 53 295 121 354 1.17e-14 73.9
Msa0538520 MtrunA17_Chr1g0196191 55.224 67 28 2 61 127 27 91 2.20e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0538520 AT5G05340.1 61.953 297 109 3 19 313 30 324 1.50e-127 367
Msa0538520 AT1G14550.1 53.333 315 142 4 3 313 8 321 1.58e-112 329
Msa0538520 AT4G36430.1 53.795 303 130 4 19 313 30 330 2.44e-112 328
Msa0538520 AT5G58400.1 52.548 314 146 2 2 313 13 325 8.41e-112 327
Msa0538520 AT5G58390.1 55.484 310 135 2 6 313 8 316 7.09e-111 324
Msa0538520 AT2G18150.1 53.135 303 132 4 19 313 36 336 7.25e-111 325
Msa0538520 AT2G18140.1 53.135 303 132 4 19 313 35 335 2.19e-108 319
Msa0538520 AT3G50990.1 50.323 310 144 4 12 313 34 341 1.07e-104 310
Msa0538520 AT1G14540.1 51.111 315 150 4 1 313 3 315 3.92e-104 307
Msa0538520 AT1G44970.1 50.814 307 140 4 16 313 42 346 9.28e-104 307
Msa0538520 AT5G66390.1 48.632 329 146 5 6 313 7 333 9.92e-104 307
Msa0538520 AT5G06720.1 48.265 317 153 4 6 313 19 333 3.79e-103 305
Msa0538520 AT5G06730.1 46.057 317 160 4 6 313 20 334 3.04e-98 294
Msa0538520 AT3G32980.1 48.366 306 145 5 19 313 31 334 1.41e-96 289
Msa0538520 AT3G49110.1 48.701 308 145 5 17 313 31 336 2.42e-96 289
Msa0538520 AT3G49120.1 46.965 313 153 5 12 313 25 335 9.64e-94 282
Msa0538520 AT2G35380.1 47.879 330 153 6 1 313 8 335 3.73e-93 280
Msa0538520 AT4G08770.1 48.366 306 145 5 19 313 24 327 1.12e-92 279
Msa0538520 AT4G08780.1 46.326 313 155 5 12 313 17 327 2.06e-92 278
Msa0538520 AT2G38380.1 46.440 323 156 7 5 313 14 333 4.94e-91 275
Msa0538520 AT1G49570.1 47.855 303 146 5 17 309 46 346 4.99e-90 273
Msa0538520 AT5G19890.1 47.077 325 151 8 1 313 12 327 9.21e-90 271
Msa0538520 AT4G16270.1 48.322 298 142 5 24 313 55 348 2.66e-89 271
Msa0538520 AT1G68850.1 45.455 308 153 6 19 313 30 335 3.36e-89 270
Msa0538520 AT2G38390.1 44.872 312 160 5 12 313 24 333 8.38e-88 267
Msa0538520 AT5G19880.1 45.277 307 154 5 19 313 25 329 5.79e-83 254
Msa0538520 AT2G22420.1 43.689 309 162 5 12 313 16 319 8.56e-83 253
Msa0538520 AT1G71695.1 43.289 298 164 4 19 313 44 339 1.30e-78 244
Msa0538520 AT3G01190.1 42.763 304 159 7 18 313 25 321 1.84e-78 242
Msa0538520 AT5G42180.1 41.534 313 169 6 6 311 10 315 3.16e-78 241
Msa0538520 AT5G64120.1 42.424 297 158 5 23 313 39 328 1.84e-77 239
Msa0538520 AT5G51890.1 42.500 320 166 9 5 313 10 322 5.12e-77 238
Msa0538520 AT5G17820.1 40.439 319 171 6 2 313 7 313 2.54e-76 236
Msa0538520 AT3G03670.1 40.317 315 178 4 6 313 10 321 1.12e-75 235
Msa0538520 AT5G15180.1 40.557 323 177 8 1 313 12 329 2.89e-75 234
Msa0538520 AT5G17820.2 40.439 319 171 6 2 313 60 366 3.93e-75 235
Msa0538520 AT1G05260.1 42.105 304 163 7 19 313 26 325 1.09e-74 233
Msa0538520 AT3G21770.1 40.446 314 174 7 8 312 18 327 1.48e-74 232
Msa0538520 AT4G33420.1 41.479 311 172 7 6 313 22 325 2.00e-73 229
Msa0538520 AT4G11290.1 39.937 318 178 7 6 313 12 326 3.70e-73 229
Msa0538520 AT4G33420.2 41.479 311 172 7 6 313 69 372 9.96e-73 229
Msa0538520 AT1G05240.1 41.311 305 164 7 19 313 26 325 2.01e-72 227
Msa0538520 AT1G05250.1 41.311 305 164 7 19 313 26 325 2.01e-72 227
Msa0538520 AT2G41480.1 41.368 307 161 6 19 313 29 328 6.51e-70 220
Msa0538520 AT5G39580.1 41.946 298 159 7 23 313 29 319 3.00e-69 218
Msa0538520 AT2G35380.2 50.201 249 109 5 78 313 1 247 3.55e-69 216
Msa0538520 AT4G26010.1 38.854 314 180 7 1 313 7 309 6.36e-69 217
Msa0538520 AT4G26010.2 38.907 311 178 7 1 310 35 334 1.44e-68 217
Msa0538520 AT2G18980.1 38.558 319 180 6 5 313 11 323 3.33e-68 216
Msa0538520 AT5G40150.1 39.683 315 179 6 3 313 21 328 3.85e-68 216
Msa0538520 AT5G67400.1 37.460 315 185 5 5 309 13 325 3.00e-66 211
Msa0538520 AT5G14130.1 36.760 321 191 6 1 313 14 330 1.42e-65 209
Msa0538520 AT4G30170.1 38.487 304 173 6 19 313 27 325 2.89e-65 208
Msa0538520 AT5G14130.2 36.760 321 191 6 1 313 55 371 3.09e-65 209
Msa0538520 AT3G28200.1 39.274 303 179 5 14 313 16 316 5.65e-65 207
Msa0538520 AT1G34510.1 38.312 308 181 6 7 313 10 309 8.68e-65 206
Msa0538520 AT1G30870.1 41.503 306 157 8 19 313 51 345 1.44e-64 207
Msa0538520 AT4G37530.1 38.742 302 175 4 17 309 25 325 3.25e-64 206
Msa0538520 AT3G49960.1 36.943 314 186 5 6 309 14 325 4.30e-64 205
Msa0538520 AT5G47000.1 36.991 319 192 6 1 313 15 330 9.15e-64 205
Msa0538520 AT5G64100.1 40.594 303 160 7 21 313 39 331 2.12e-63 204
Msa0538520 AT5G64110.1 40.308 325 171 8 2 313 16 330 5.99e-63 202
Msa0538520 AT4G33870.1 34.024 338 178 6 17 312 66 400 1.72e-62 203
Msa0538520 AT4G17690.1 38.127 299 179 5 19 313 26 322 2.63e-61 198
Msa0538520 AT2G39040.1 40.453 309 166 10 19 313 46 350 9.57e-61 197
Msa0538520 AT4G37520.1 37.086 302 180 4 17 309 25 325 4.34e-60 195
Msa0538520 AT5G22410.1 34.472 322 190 10 1 310 10 322 3.27e-59 193
Msa0538520 AT4G31760.1 36.909 317 184 5 6 313 17 326 8.34e-59 192
Msa0538520 AT1G24110.1 37.294 303 180 6 19 313 22 322 9.19e-59 191
Msa0538520 AT4G37520.2 36.755 302 178 5 17 309 25 322 2.69e-58 190
Msa0538520 AT5G24070.1 37.037 324 182 8 4 313 20 335 8.05e-58 189
Msa0538520 AT4G37530.2 40.000 255 143 4 17 262 25 278 4.65e-56 183
Msa0538520 AT4G25980.1 36.013 311 181 6 15 313 22 326 7.26e-56 184
Msa0538520 AT2G34060.1 37.500 304 176 7 19 310 42 343 8.38e-56 184
Msa0538520 AT2G24800.1 36.393 305 178 5 19 313 31 329 1.39e-55 183
Msa0538520 AT2G37130.1 36.545 301 182 6 19 313 30 327 3.60e-55 182
Msa0538520 AT1G77100.1 39.145 304 172 9 17 313 22 319 4.37e-55 182
Msa0538520 AT2G37130.2 36.577 298 180 6 22 313 2 296 4.43e-55 181
Msa0538520 AT2G43480.1 36.111 324 181 9 4 313 24 335 4.50e-55 182
Msa0538520 AT4G21960.1 34.259 324 199 6 1 313 7 327 1.13e-54 181
Msa0538520 AT3G17070.1 34.304 309 182 8 19 313 38 339 1.47e-46 160
Msa0538520 AT5G39580.2 40.686 204 110 6 6 209 12 204 9.10e-40 139
Msa0538520 AT4G25980.2 42.529 174 94 4 19 192 71 238 3.99e-37 134
Msa0538520 AT3G17070.2 34.457 267 153 9 61 313 18 276 2.46e-35 129
Msa0538520 AT2G24800.2 39.583 192 104 6 19 209 31 211 5.87e-34 125
Msa0538520 AT1G77490.2 25.000 260 152 8 53 295 106 339 2.23e-13 70.9
Msa0538520 AT1G77490.1 25.000 260 152 8 53 295 106 339 2.69e-13 70.5

Find 60 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAGCTGAATTGATATT+TGG 0.122185 4_1:+17893726 None:intergenic
AATATCTTGATGATCTTAAT+TGG 0.198524 4_1:+17892385 None:intergenic
TGAAGTGATTGATGAGATTA+AGG 0.221980 4_1:-17893700 Msa0538520:CDS
CTAATAGTGCTCAGAGCATT+AGG 0.245488 4_1:+17894021 None:intergenic
GTTGGAGTCTCCGCCTTCTC+TGG 0.247907 4_1:+17892658 None:intergenic
GGAAATATTAAGCCACTTAC+TGG 0.284799 4_1:-17892443 Msa0538520:CDS
AAAGACCTCGTTGCCCTATC+TGG 0.286567 4_1:-17892785 Msa0538520:CDS
GTATTTCTCAATGTTCTTCC+AGG 0.331196 4_1:-17894115 None:intergenic
GTGAAATTCGTTCAAATTGC+AGG 0.340953 4_1:-17892412 Msa0538520:CDS
AGTCGTGCCGATGCAGATTC+AGG 0.362977 4_1:-17892878 Msa0538520:CDS
TGCGAAATCTATGATTAAGA+TGG 0.368103 4_1:-17892465 Msa0538520:CDS
AAAGAAAGGGCTTCTTCATT+CGG 0.378097 4_1:-17892570 Msa0538520:CDS
CTATCTGGAGCACACACTAT+TGG 0.391267 4_1:-17892770 Msa0538520:CDS
TGTTCTTGTCATTGTAGATT+CGG 0.397423 4_1:+17892720 None:intergenic
AGACTCCAACCTTGCAGCTC+TGG 0.398193 4_1:-17892645 Msa0538520:CDS
CAATAGTGTGTGCTCCAGAT+AGG 0.400931 4_1:+17892771 None:intergenic
TAATAGTGCTCAGAGCATTA+GGG 0.413537 4_1:+17894022 None:intergenic
CCTAGCTGCACTTTCCATGA+TGG 0.425419 4_1:+17892923 None:intergenic
AGAAAGACTGAATGATGGTC+CGG 0.452732 4_1:+17892847 None:intergenic
TGTTTCTTGTGCAGACATAT+TGG 0.453461 4_1:-17893646 Msa0538520:CDS
AGGGCTTCTTCATTCGGATC+AGG 0.466116 4_1:-17892564 Msa0538520:CDS
TCACCTTGACTCCCAGTAAG+TGG 0.470456 4_1:+17892431 None:intergenic
TTGGAGTCTCCGCCTTCTCT+GGG 0.473984 4_1:+17892659 None:intergenic
TCTAGACTCTACACCTTCCA+TGG 0.474313 4_1:-17893769 Msa0538520:CDS
GAGAGTTGGTTAGAAAATAT+AGG 0.486438 4_1:-17892517 Msa0538520:CDS
AAACTTCGCAAAACAGCTTC+AGG 0.489344 4_1:-17892690 Msa0538520:CDS
ATGTCTGCACAAGAAACAAC+TGG 0.493198 4_1:+17893651 None:intergenic
GCGAAATCTATGATTAAGAT+GGG 0.499275 4_1:-17892464 Msa0538520:CDS
GAGCTGCCAACACTATTGCC+TGG 0.503939 4_1:+17894097 None:intergenic
TCGGATCAGGAATTATTGAA+TGG 0.520005 4_1:-17892551 Msa0538520:CDS
GAAAGACTGAATGATGGTCC+GGG 0.528311 4_1:+17892848 None:intergenic
CCAAATATCAATTCAGCTAG+AGG 0.539441 4_1:-17893726 Msa0538520:CDS
ATTGTGATTCAGGGTTGTGA+TGG 0.541677 4_1:-17893801 Msa0538520:intron
ACAGTCCAGAGCTGCAAGGT+TGG 0.543015 4_1:+17892640 None:intergenic
CAGGACATTTGTCCCAGAGA+AGG 0.546209 4_1:-17892671 Msa0538520:CDS
AATAGTGTGTGCTCCAGATA+GGG 0.548473 4_1:+17892772 None:intergenic
TTATTGAATGGTGATTATAC+CGG 0.552254 4_1:-17892539 Msa0538520:CDS
GCAGATTCAGGCAACATCCC+CGG 0.567065 4_1:-17892866 Msa0538520:CDS
TGCAGTTAGGAGGACCATCA+TGG 0.571529 4_1:-17892937 Msa0538520:intron
GTTCTTCCAGGCAATAGTGT+TGG 0.575808 4_1:-17894103 Msa0538520:CDS
TATATATGGATGCAGTTAGG+AGG 0.592979 4_1:-17892947 Msa0538520:intron
GATGTTGCCTGAATCTGCAT+CGG 0.594676 4_1:+17892871 None:intergenic
GACATTTGTCCCAGAGAAGG+CGG 0.594732 4_1:-17892668 Msa0538520:CDS
TGGTGATTATACCGGAGAGT+TGG 0.597571 4_1:-17892531 Msa0538520:CDS
CCATCATGGAAAGTGCAGCT+AGG 0.599561 4_1:-17892923 Msa0538520:CDS
TGCAAGAGACTCCGTCGTTG+CGG 0.606891 4_1:-17893616 Msa0538520:intron
AAGCCACTTACTGGGAGTCA+AGG 0.611405 4_1:-17892434 Msa0538520:CDS
GAATCTGTTGATAAAGCATG+TGG 0.612974 4_1:-17893678 Msa0538520:CDS
ATTATTACTAACCGCAACGA+CGG 0.620676 4_1:+17893605 None:intergenic
GAAATATTAAGCCACTTACT+GGG 0.622320 4_1:-17892442 Msa0538520:CDS
AGTTGAGAAAGACTGAATGA+TGG 0.626761 4_1:+17892842 None:intergenic
GTTCAAAGAGAGAACCGTAT+GGG 0.629967 4_1:-17893979 Msa0538520:CDS
AGTTCAAAGAGAGAACCGTA+TGG 0.633955 4_1:-17893980 Msa0538520:CDS
CAAAGAGAGAACCGTATGGG+TGG 0.637423 4_1:-17893976 Msa0538520:CDS
GTAGTAAAGAGCCACCCATA+CGG 0.639551 4_1:+17893965 None:intergenic
TAACACAGTCCAGAGCTGCA+AGG 0.687514 4_1:+17892636 None:intergenic
AGCTCTGGACTGTGTTACAC+CGG 0.693086 4_1:-17892630 Msa0538520:CDS
TACACCGGCAAAATTCGATG+TGG 0.718388 4_1:-17892615 Msa0538520:CDS
AAAGACTGAATGATGGTCCG+GGG 0.721286 4_1:+17892849 None:intergenic
GTGCTCCAGATAGGGCAACG+AGG 0.748414 4_1:+17892780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAATAAATAAAATT+GGG + chr4_1:17892687-17892706 None:intergenic 0.0%
!! AATAAAATAAATTTAATAAA+AGG - chr4_1:17893002-17893021 Msa0538520:intron 0.0%
!! AATAAAAAATAAATAAAATT+GGG + chr4_1:17892687-17892706 None:intergenic 0.0%
!! AATAAAATAAATTTAATAAA+AGG - chr4_1:17893002-17893021 Msa0538520:intron 0.0%
!! GATAATAAAAATTTATTTGA+TGG - chr4_1:17893305-17893324 Msa0538520:intron 10.0%
!! GATAATAAAAATTTATTTGA+TGG - chr4_1:17893305-17893324 Msa0538520:intron 10.0%
!!! TTTATTTTTTATTGTGATTC+AGG - chr4_1:17892694-17892713 Msa0538520:CDS 15.0%
!!! TTATTTTTTATTGTGATTCA+GGG - chr4_1:17892695-17892714 Msa0538520:CDS 15.0%
!! TAAATTTAATAAAAGGATGT+TGG - chr4_1:17893009-17893028 Msa0538520:intron 15.0%
!! CTGAAATTTACAATTATATA+TGG - chr4_1:17893544-17893563 Msa0538520:intron 15.0%
!!! TTTATTTTTTATTGTGATTC+AGG - chr4_1:17892694-17892713 Msa0538520:CDS 15.0%
!!! TTATTTTTTATTGTGATTCA+GGG - chr4_1:17892695-17892714 Msa0538520:CDS 15.0%
!! TAAATTTAATAAAAGGATGT+TGG - chr4_1:17893009-17893028 Msa0538520:intron 15.0%
!! CTGAAATTTACAATTATATA+TGG - chr4_1:17893544-17893563 Msa0538520:intron 15.0%
!!! AATTTTGATATATTCAGAGT+TGG + chr4_1:17893077-17893096 None:intergenic 20.0%
!! AAAATTATGTTAACTAGATC+AGG - chr4_1:17893342-17893361 Msa0538520:intron 20.0%
!! AATATATACACATCAATAGA+AGG + chr4_1:17893426-17893445 None:intergenic 20.0%
!!! TTGATGTGTATATATTGATT+TGG - chr4_1:17893430-17893449 Msa0538520:intron 20.0%
!!! AATTTTGATATATTCAGAGT+TGG + chr4_1:17893077-17893096 None:intergenic 20.0%
!! AAAATTATGTTAACTAGATC+AGG - chr4_1:17893342-17893361 Msa0538520:intron 20.0%
!! AATATATACACATCAATAGA+AGG + chr4_1:17893426-17893445 None:intergenic 20.0%
!!! TTGATGTGTATATATTGATT+TGG - chr4_1:17893430-17893449 Msa0538520:intron 20.0%
!! ATCTACAAATTTGCTTGTAA+GGG + chr4_1:17892662-17892681 None:intergenic 25.0%
!! TATCTACAAATTTGCTTGTA+AGG + chr4_1:17892663-17892682 None:intergenic 25.0%
!! GGTATACTTGTTAACATAAA+CGG + chr4_1:17893053-17893072 None:intergenic 25.0%
! TGAGTTATTGGATATTAAAG+AGG + chr4_1:17893479-17893498 None:intergenic 25.0%
!!! ATTTTGCTCTTTTGAGTTAT+TGG + chr4_1:17893491-17893510 None:intergenic 25.0%
! AATTATATATGGATGCAGTT+AGG - chr4_1:17893555-17893574 Msa0538520:intron 25.0%
! ACAGAACTGATTAAAAAGAA+AGG - chr4_1:17893921-17893940 Msa0538520:intron 25.0%
! CAGAACTGATTAAAAAGAAA+GGG - chr4_1:17893922-17893941 Msa0538520:intron 25.0%
! TTATTGAATGGTGATTATAC+CGG - chr4_1:17893966-17893985 Msa0538520:CDS 25.0%
!! ATCTACAAATTTGCTTGTAA+GGG + chr4_1:17892662-17892681 None:intergenic 25.0%
!! TATCTACAAATTTGCTTGTA+AGG + chr4_1:17892663-17892682 None:intergenic 25.0%
!! GGTATACTTGTTAACATAAA+CGG + chr4_1:17893053-17893072 None:intergenic 25.0%
! TGAGTTATTGGATATTAAAG+AGG + chr4_1:17893479-17893498 None:intergenic 25.0%
!!! ATTTTGCTCTTTTGAGTTAT+TGG + chr4_1:17893491-17893510 None:intergenic 25.0%
! AATTATATATGGATGCAGTT+AGG - chr4_1:17893555-17893574 Msa0538520:intron 25.0%
! ACAGAACTGATTAAAAAGAA+AGG - chr4_1:17893921-17893940 Msa0538520:intron 25.0%
! CAGAACTGATTAAAAAGAAA+GGG - chr4_1:17893922-17893941 Msa0538520:intron 25.0%
! TTATTGAATGGTGATTATAC+CGG - chr4_1:17893966-17893985 Msa0538520:CDS 25.0%
TGAAGTGATTGATGAGATTA+AGG - chr4_1:17892805-17892824 Msa0538520:CDS 30.0%
TTTGATATATTCAGAGTTGG+TGG + chr4_1:17893074-17893093 None:intergenic 30.0%
ATTAGCAAGTTACACAACTT+TGG + chr4_1:17893107-17893126 None:intergenic 30.0%
GATATTAAAGAGGATTTCGT+AGG + chr4_1:17893469-17893488 None:intergenic 30.0%
ATCAAAAATTTCGACAACCA+AGG - chr4_1:17893687-17893706 Msa0538520:CDS 30.0%
TGTTCTTGTCATTGTAGATT+CGG + chr4_1:17893788-17893807 None:intergenic 30.0%
! ATATTTTCTAACCAACTCTC+CGG + chr4_1:17893988-17894007 None:intergenic 30.0%
! GAGAGTTGGTTAGAAAATAT+AGG - chr4_1:17893988-17894007 Msa0538520:CDS 30.0%
TGCGAAATCTATGATTAAGA+TGG - chr4_1:17894040-17894059 Msa0538520:CDS 30.0%
GCGAAATCTATGATTAAGAT+GGG - chr4_1:17894041-17894060 Msa0538520:CDS 30.0%
GAAATATTAAGCCACTTACT+GGG - chr4_1:17894063-17894082 Msa0538520:CDS 30.0%
TGAAGTGATTGATGAGATTA+AGG - chr4_1:17892805-17892824 Msa0538520:CDS 30.0%
TTTGATATATTCAGAGTTGG+TGG + chr4_1:17893074-17893093 None:intergenic 30.0%
ATTAGCAAGTTACACAACTT+TGG + chr4_1:17893107-17893126 None:intergenic 30.0%
GATATTAAAGAGGATTTCGT+AGG + chr4_1:17893469-17893488 None:intergenic 30.0%
ATCAAAAATTTCGACAACCA+AGG - chr4_1:17893687-17893706 Msa0538520:CDS 30.0%
TGTTCTTGTCATTGTAGATT+CGG + chr4_1:17893788-17893807 None:intergenic 30.0%
! ATATTTTCTAACCAACTCTC+CGG + chr4_1:17893988-17894007 None:intergenic 30.0%
! GAGAGTTGGTTAGAAAATAT+AGG - chr4_1:17893988-17894007 Msa0538520:CDS 30.0%
TGCGAAATCTATGATTAAGA+TGG - chr4_1:17894040-17894059 Msa0538520:CDS 30.0%
GCGAAATCTATGATTAAGAT+GGG - chr4_1:17894041-17894060 Msa0538520:CDS 30.0%
GAAATATTAAGCCACTTACT+GGG - chr4_1:17894063-17894082 Msa0538520:CDS 30.0%
! TAATAGTGCTCAGAGCATTA+GGG + chr4_1:17892486-17892505 None:intergenic 35.0%
!!! TTTTTTTCACTGTCCATGGA+AGG + chr4_1:17892752-17892771 None:intergenic 35.0%
!!! TGCATTTTTTTCACTGTCCA+TGG + chr4_1:17892756-17892775 None:intergenic 35.0%
CCTCTAGCTGAATTGATATT+TGG + chr4_1:17892782-17892801 None:intergenic 35.0%
CCAAATATCAATTCAGCTAG+AGG - chr4_1:17892779-17892798 Msa0538520:CDS 35.0%
! GAATCTGTTGATAAAGCATG+TGG - chr4_1:17892827-17892846 Msa0538520:CDS 35.0%
TGTTTCTTGTGCAGACATAT+TGG - chr4_1:17892859-17892878 Msa0538520:CDS 35.0%
ATTATTACTAACCGCAACGA+CGG + chr4_1:17892903-17892922 None:intergenic 35.0%
TTGAACAGAATTAGTCAGCA+TGG - chr4_1:17892958-17892977 Msa0538520:intron 35.0%
TATATATGGATGCAGTTAGG+AGG - chr4_1:17893558-17893577 Msa0538520:intron 35.0%
AGTTGAGAAAGACTGAATGA+TGG + chr4_1:17893666-17893685 None:intergenic 35.0%
AAAGAAAGGGCTTCTTCATT+CGG - chr4_1:17893935-17893954 Msa0538520:intron 35.0%
TCGGATCAGGAATTATTGAA+TGG - chr4_1:17893954-17893973 Msa0538520:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG - chr4_1:17894062-17894081 Msa0538520:CDS 35.0%
GTGAAATTCGTTCAAATTGC+AGG - chr4_1:17894093-17894112 Msa0538520:CDS 35.0%
! TAATAGTGCTCAGAGCATTA+GGG + chr4_1:17892486-17892505 None:intergenic 35.0%
!!! TTTTTTTCACTGTCCATGGA+AGG + chr4_1:17892752-17892771 None:intergenic 35.0%
!!! TGCATTTTTTTCACTGTCCA+TGG + chr4_1:17892756-17892775 None:intergenic 35.0%
CCTCTAGCTGAATTGATATT+TGG + chr4_1:17892782-17892801 None:intergenic 35.0%
CCAAATATCAATTCAGCTAG+AGG - chr4_1:17892779-17892798 Msa0538520:CDS 35.0%
! GAATCTGTTGATAAAGCATG+TGG - chr4_1:17892827-17892846 Msa0538520:CDS 35.0%
TGTTTCTTGTGCAGACATAT+TGG - chr4_1:17892859-17892878 Msa0538520:CDS 35.0%
ATTATTACTAACCGCAACGA+CGG + chr4_1:17892903-17892922 None:intergenic 35.0%
TTGAACAGAATTAGTCAGCA+TGG - chr4_1:17892958-17892977 Msa0538520:intron 35.0%
TATATATGGATGCAGTTAGG+AGG - chr4_1:17893558-17893577 Msa0538520:intron 35.0%
AGTTGAGAAAGACTGAATGA+TGG + chr4_1:17893666-17893685 None:intergenic 35.0%
AAAGAAAGGGCTTCTTCATT+CGG - chr4_1:17893935-17893954 Msa0538520:intron 35.0%
TCGGATCAGGAATTATTGAA+TGG - chr4_1:17893954-17893973 Msa0538520:CDS 35.0%
GGAAATATTAAGCCACTTAC+TGG - chr4_1:17894062-17894081 Msa0538520:CDS 35.0%
GTGAAATTCGTTCAAATTGC+AGG - chr4_1:17894093-17894112 Msa0538520:CDS 35.0%
! CTAATAGTGCTCAGAGCATT+AGG + chr4_1:17892487-17892506 None:intergenic 40.0%
AGTTCAAAGAGAGAACCGTA+TGG - chr4_1:17892525-17892544 Msa0538520:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG - chr4_1:17892526-17892545 Msa0538520:CDS 40.0%
ATTGTGATTCAGGGTTGTGA+TGG - chr4_1:17892704-17892723 Msa0538520:CDS 40.0%
ATGTCTGCACAAGAAACAAC+TGG + chr4_1:17892857-17892876 None:intergenic 40.0%
ACAGAATTAGTCAGCATGGT+TGG - chr4_1:17892962-17892981 Msa0538520:intron 40.0%
! TGGAGTGTCTCTTAACTAGT+TGG + chr4_1:17893381-17893400 None:intergenic 40.0%
TGAAGACCAACAAACATGCA+TGG + chr4_1:17893401-17893420 None:intergenic 40.0%
AAAGAGGATTTCGTAGGACT+TGG + chr4_1:17893463-17893482 None:intergenic 40.0%
AGAAAGACTGAATGATGGTC+CGG + chr4_1:17893661-17893680 None:intergenic 40.0%
!! CAACGAGGTCTTTTTCGTTT+AGG + chr4_1:17893713-17893732 None:intergenic 40.0%
AATAGTGTGTGCTCCAGATA+GGG + chr4_1:17893736-17893755 None:intergenic 40.0%
AAACTTCGCAAAACAGCTTC+AGG - chr4_1:17893815-17893834 Msa0538520:intron 40.0%
! TATGCCACATCGAATTTTGC+CGG + chr4_1:17893897-17893916 None:intergenic 40.0%
! CTAATAGTGCTCAGAGCATT+AGG + chr4_1:17892487-17892506 None:intergenic 40.0%
AGTTCAAAGAGAGAACCGTA+TGG - chr4_1:17892525-17892544 Msa0538520:CDS 40.0%
GTTCAAAGAGAGAACCGTAT+GGG - chr4_1:17892526-17892545 Msa0538520:CDS 40.0%
ATTGTGATTCAGGGTTGTGA+TGG - chr4_1:17892704-17892723 Msa0538520:CDS 40.0%
ATGTCTGCACAAGAAACAAC+TGG + chr4_1:17892857-17892876 None:intergenic 40.0%
ACAGAATTAGTCAGCATGGT+TGG - chr4_1:17892962-17892981 Msa0538520:intron 40.0%
! TGGAGTGTCTCTTAACTAGT+TGG + chr4_1:17893381-17893400 None:intergenic 40.0%
TGAAGACCAACAAACATGCA+TGG + chr4_1:17893401-17893420 None:intergenic 40.0%
AAAGAGGATTTCGTAGGACT+TGG + chr4_1:17893463-17893482 None:intergenic 40.0%
AGAAAGACTGAATGATGGTC+CGG + chr4_1:17893661-17893680 None:intergenic 40.0%
!! CAACGAGGTCTTTTTCGTTT+AGG + chr4_1:17893713-17893732 None:intergenic 40.0%
AATAGTGTGTGCTCCAGATA+GGG + chr4_1:17893736-17893755 None:intergenic 40.0%
AAACTTCGCAAAACAGCTTC+AGG - chr4_1:17893815-17893834 Msa0538520:intron 40.0%
! TATGCCACATCGAATTTTGC+CGG + chr4_1:17893897-17893916 None:intergenic 40.0%
GTTCTTCCAGGCAATAGTGT+TGG - chr4_1:17892402-17892421 Msa0538520:CDS 45.0%
GTAGTAAAGAGCCACCCATA+CGG + chr4_1:17892543-17892562 None:intergenic 45.0%
TCTAGACTCTACACCTTCCA+TGG - chr4_1:17892736-17892755 Msa0538520:CDS 45.0%
GACACTCCATGCATGTTTGT+TGG - chr4_1:17893392-17893411 Msa0538520:intron 45.0%
GATGTTGCCTGAATCTGCAT+CGG + chr4_1:17893637-17893656 None:intergenic 45.0%
AAAGACTGAATGATGGTCCG+GGG + chr4_1:17893659-17893678 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG + chr4_1:17893660-17893679 None:intergenic 45.0%
!! GGTCTTTTTCGTTTAGGCCT+TGG + chr4_1:17893707-17893726 None:intergenic 45.0%
CAATAGTGTGTGCTCCAGAT+AGG + chr4_1:17893737-17893756 None:intergenic 45.0%
! CTATCTGGAGCACACACTAT+TGG - chr4_1:17893735-17893754 Msa0538520:CDS 45.0%
TACACCGGCAAAATTCGATG+TGG - chr4_1:17893890-17893909 Msa0538520:intron 45.0%
TGGTGATTATACCGGAGAGT+TGG - chr4_1:17893974-17893993 Msa0538520:CDS 45.0%
GTTCTTCCAGGCAATAGTGT+TGG - chr4_1:17892402-17892421 Msa0538520:CDS 45.0%
GTAGTAAAGAGCCACCCATA+CGG + chr4_1:17892543-17892562 None:intergenic 45.0%
TCTAGACTCTACACCTTCCA+TGG - chr4_1:17892736-17892755 Msa0538520:CDS 45.0%
GACACTCCATGCATGTTTGT+TGG - chr4_1:17893392-17893411 Msa0538520:intron 45.0%
GATGTTGCCTGAATCTGCAT+CGG + chr4_1:17893637-17893656 None:intergenic 45.0%
AAAGACTGAATGATGGTCCG+GGG + chr4_1:17893659-17893678 None:intergenic 45.0%
GAAAGACTGAATGATGGTCC+GGG + chr4_1:17893660-17893679 None:intergenic 45.0%
!! GGTCTTTTTCGTTTAGGCCT+TGG + chr4_1:17893707-17893726 None:intergenic 45.0%
CAATAGTGTGTGCTCCAGAT+AGG + chr4_1:17893737-17893756 None:intergenic 45.0%
! CTATCTGGAGCACACACTAT+TGG - chr4_1:17893735-17893754 Msa0538520:CDS 45.0%
TACACCGGCAAAATTCGATG+TGG - chr4_1:17893890-17893909 Msa0538520:intron 45.0%
TGGTGATTATACCGGAGAGT+TGG - chr4_1:17893974-17893993 Msa0538520:CDS 45.0%
!! CAATAAAAAATAAATAAAAT+TGG + chr4_1:17892688-17892707 None:intergenic 5.0%
!! CAATAAAAAATAAATAAAAT+TGG + chr4_1:17892688-17892707 None:intergenic 5.0%
CAAAGAGAGAACCGTATGGG+TGG - chr4_1:17892529-17892548 Msa0538520:CDS 50.0%
TGCAGTTAGGAGGACCATCA+TGG - chr4_1:17893568-17893587 Msa0538520:intron 50.0%
CCTAGCTGCACTTTCCATGA+TGG + chr4_1:17893585-17893604 None:intergenic 50.0%
! CCATCATGGAAAGTGCAGCT+AGG - chr4_1:17893582-17893601 Msa0538520:intron 50.0%
AAAGACCTCGTTGCCCTATC+TGG - chr4_1:17893720-17893739 Msa0538520:CDS 50.0%
CAGGACATTTGTCCCAGAGA+AGG - chr4_1:17893834-17893853 Msa0538520:intron 50.0%
GACATTTGTCCCAGAGAAGG+CGG - chr4_1:17893837-17893856 Msa0538520:intron 50.0%
TAACACAGTCCAGAGCTGCA+AGG + chr4_1:17893872-17893891 None:intergenic 50.0%
!! AGCTCTGGACTGTGTTACAC+CGG - chr4_1:17893875-17893894 Msa0538520:intron 50.0%
AGGGCTTCTTCATTCGGATC+AGG - chr4_1:17893941-17893960 Msa0538520:CDS 50.0%
AAGCCACTTACTGGGAGTCA+AGG - chr4_1:17894071-17894090 Msa0538520:CDS 50.0%
TCACCTTGACTCCCAGTAAG+TGG + chr4_1:17894077-17894096 None:intergenic 50.0%
CAAAGAGAGAACCGTATGGG+TGG - chr4_1:17892529-17892548 Msa0538520:CDS 50.0%
TGCAGTTAGGAGGACCATCA+TGG - chr4_1:17893568-17893587 Msa0538520:intron 50.0%
CCTAGCTGCACTTTCCATGA+TGG + chr4_1:17893585-17893604 None:intergenic 50.0%
! CCATCATGGAAAGTGCAGCT+AGG - chr4_1:17893582-17893601 Msa0538520:intron 50.0%
AAAGACCTCGTTGCCCTATC+TGG - chr4_1:17893720-17893739 Msa0538520:CDS 50.0%
CAGGACATTTGTCCCAGAGA+AGG - chr4_1:17893834-17893853 Msa0538520:intron 50.0%
GACATTTGTCCCAGAGAAGG+CGG - chr4_1:17893837-17893856 Msa0538520:intron 50.0%
TAACACAGTCCAGAGCTGCA+AGG + chr4_1:17893872-17893891 None:intergenic 50.0%
!! AGCTCTGGACTGTGTTACAC+CGG - chr4_1:17893875-17893894 Msa0538520:intron 50.0%
AGGGCTTCTTCATTCGGATC+AGG - chr4_1:17893941-17893960 Msa0538520:CDS 50.0%
AAGCCACTTACTGGGAGTCA+AGG - chr4_1:17894071-17894090 Msa0538520:CDS 50.0%
TCACCTTGACTCCCAGTAAG+TGG + chr4_1:17894077-17894096 None:intergenic 50.0%
GAGCTGCCAACACTATTGCC+TGG + chr4_1:17892411-17892430 None:intergenic 55.0%
TGCAAGAGACTCCGTCGTTG+CGG - chr4_1:17892889-17892908 Msa0538520:CDS 55.0%
! AGTCGTGCCGATGCAGATTC+AGG - chr4_1:17893627-17893646 Msa0538520:CDS 55.0%
GCAGATTCAGGCAACATCCC+CGG - chr4_1:17893639-17893658 Msa0538520:CDS 55.0%
TTGGAGTCTCCGCCTTCTCT+GGG + chr4_1:17893849-17893868 None:intergenic 55.0%
AGACTCCAACCTTGCAGCTC+TGG - chr4_1:17893860-17893879 Msa0538520:intron 55.0%
ACAGTCCAGAGCTGCAAGGT+TGG + chr4_1:17893868-17893887 None:intergenic 55.0%
GAGCTGCCAACACTATTGCC+TGG + chr4_1:17892411-17892430 None:intergenic 55.0%
TGCAAGAGACTCCGTCGTTG+CGG - chr4_1:17892889-17892908 Msa0538520:CDS 55.0%
! AGTCGTGCCGATGCAGATTC+AGG - chr4_1:17893627-17893646 Msa0538520:CDS 55.0%
GCAGATTCAGGCAACATCCC+CGG - chr4_1:17893639-17893658 Msa0538520:CDS 55.0%
TTGGAGTCTCCGCCTTCTCT+GGG + chr4_1:17893849-17893868 None:intergenic 55.0%
AGACTCCAACCTTGCAGCTC+TGG - chr4_1:17893860-17893879 Msa0538520:intron 55.0%
ACAGTCCAGAGCTGCAAGGT+TGG + chr4_1:17893868-17893887 None:intergenic 55.0%
GTGCTCCAGATAGGGCAACG+AGG + chr4_1:17893728-17893747 None:intergenic 60.0%
GTTGGAGTCTCCGCCTTCTC+TGG + chr4_1:17893850-17893869 None:intergenic 60.0%
GTGCTCCAGATAGGGCAACG+AGG + chr4_1:17893728-17893747 None:intergenic 60.0%
GTTGGAGTCTCCGCCTTCTC+TGG + chr4_1:17893850-17893869 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 17892400 17894127 17892400 ID=Msa0538520;Name=Msa0538520
chr4_1 mRNA 17892400 17894127 17892400 ID=Msa0538520-mRNA-1;Parent=Msa0538520;Name=Msa0538520-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|1|1|3|0|313
chr4_1 exon 17893936 17894127 17893936 ID=Msa0538520-mRNA-1:exon:5311;Parent=Msa0538520-mRNA-1
chr4_1 exon 17893617 17893811 17893617 ID=Msa0538520-mRNA-1:exon:5310;Parent=Msa0538520-mRNA-1
chr4_1 exon 17892400 17892954 17892400 ID=Msa0538520-mRNA-1:exon:5309;Parent=Msa0538520-mRNA-1
chr4_1 CDS 17893936 17894127 17893936 ID=Msa0538520-mRNA-1:cds;Parent=Msa0538520-mRNA-1
chr4_1 CDS 17893617 17893811 17893617 ID=Msa0538520-mRNA-1:cds;Parent=Msa0538520-mRNA-1
chr4_1 CDS 17892400 17892954 17892400 ID=Msa0538520-mRNA-1:cds;Parent=Msa0538520-mRNA-1
Gene Sequence

>Msa0538520

ATGTTCTTCCAGGCAATAGTGTTGGCAGCTCTTGCAACAACAACATTTTCAGCACTCACAACAAATTACTATGATTACACATGCCCTAATGCTCTGAGCACTATTAGAAATGTTGTTGAAGCTGCAGTTCAAAGAGAGAACCGTATGGGTGGCTCTTTACTACGCTTGCATTTTCATGATTGCTTTGTTAACGGTTGTGATGGTTCACTTCTTCTAGACTCTACACCTTCCATGGACAGTGAAAAAAATGCAAATCCAAATATCAATTCAGCTAGAGGATTTGAAGTGATTGATGAGATTAAGGAATCTGTTGATAAAGCATGTGGAAAACCAGTTGTTTCTTGTGCAGACATATTGGCTGTAGCTGCAAGAGACTCCGTCGTTGCGTTAGGAGGACCATCATGGAAAGTGCAGCTAGGAAGAAGAGACTCAAAGACAGCAAGTCGTGCCGATGCAGATTCAGGCAACATCCCCGGACCATCATTCAGTCTTTCTCAACTCATCAAAAATTTCGACAACCAAGGCCTAAACGAAAAAGACCTCGTTGCCCTATCTGGAGCACACACTATTGGATTTTCGCGCTGTCTTTTATTTAGAGACCGAATCTACAATGACAAGAACATCGATGCAAACTTCGCAAAACAGCTTCAGGACATTTGTCCCAGAGAAGGCGGAGACTCCAACCTTGCAGCTCTGGACTGTGTTACACCGGCAAAATTCGATGTGGCATATTACACAGAACTGATTAAAAAGAAAGGGCTTCTTCATTCGGATCAGGAATTATTGAATGGTGATTATACCGGAGAGTTGGTTAGAAAATATAGGCGCGATACAAGTTCTTTCTACAACGACTTTGCGAAATCTATGATTAAGATGGGAAATATTAAGCCACTTACTGGGAGTCAAGGTGAAATTCGTTCAAATTGCAGGAGAGCCAATTAA

Protein sequence

>Msa0538520

MFFQAIVLAALATTTFSALTTNYYDYTCPNALSTIRNVVEAAVQRENRMGGSLLRLHFHDCFVNGCDGSLLLDSTPSMDSEKNANPNINSARGFEVIDEIKESVDKACGKPVVSCADILAVAARDSVVALGGPSWKVQLGRRDSKTASRADADSGNIPGPSFSLSQLIKNFDNQGLNEKDLVALSGAHTIGFSRCLLFRDRIYNDKNIDANFAKQLQDICPREGGDSNLAALDCVTPAKFDVAYYTELIKKKGLLHSDQELLNGDYTGELVRKYRRDTSSFYNDFAKSMIKMGNIKPLTGSQGEIRSNCRRAN*