Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342760 | XP_039685079.1 | 78.940 | 717 | 117 | 1 | 1 | 717 | 1 | 683 | 0.0 | 1144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342760 | sp|O65278|ULP1B_ARATH | 25.229 | 218 | 140 | 8 | 477 | 688 | 141 | 341 | 2.38e-12 | 72.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342760 | A0A072TKR8 | 63.500 | 400 | 44 | 4 | 1 | 399 | 1 | 299 | 3.67e-157 | 466 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027680 | Msa0342760 | 0.831920 | 1.269495e-55 | -8.615850e-47 |
| Msa0210730 | Msa0342760 | 0.924152 | 1.031538e-89 | -8.615850e-47 |
| Msa0317780 | Msa0342760 | 0.969399 | 4.582937e-130 | -8.615850e-47 |
| Msa0342760 | Msa0352050 | 0.917650 | 4.097002e-86 | -8.615850e-47 |
| Msa0342760 | Msa0878530 | 0.859004 | 5.581929e-63 | -8.615850e-47 |
| Msa0342760 | Msa0900920 | 0.982266 | 1.189665e-154 | -8.615850e-47 |
| Msa0342760 | Msa0952380 | 0.913805 | 4.015557e-84 | -8.615850e-47 |
| Msa0342760 | Msa0954640 | 0.917441 | 5.291312e-86 | -8.615850e-47 |
| Msa0342760 | Msa1025910 | 0.919346 | 5.049149e-87 | -8.615850e-47 |
| Msa0342760 | Msa1152170 | 0.813085 | 3.059596e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342760 | MtrunA17_Chr6g0474521 | 69.782 | 321 | 56 | 1 | 42 | 362 | 1 | 280 | 1.29e-152 | 444 |
| Msa0342760 | MtrunA17_Chr1g0162981 | 62.838 | 148 | 51 | 1 | 256 | 399 | 1 | 148 | 1.10e-54 | 185 |
| Msa0342760 | MtrunA17_Chr4g0074621 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 2.81e-53 | 178 |
| Msa0342760 | MtrunA17_Chr1g0175971 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 2.81e-53 | 178 |
| Msa0342760 | MtrunA17_Chr8g0337461 | 86.765 | 68 | 9 | 0 | 1 | 68 | 1 | 68 | 1.28e-33 | 123 |
| Msa0342760 | MtrunA17_Chr7g0265121 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 8.06e-33 | 125 |
| Msa0342760 | MtrunA17_Chr4g0074611 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 8.06e-33 | 125 |
| Msa0342760 | MtrunA17_Chr4g0012881 | 26.339 | 224 | 147 | 7 | 31 | 246 | 38 | 251 | 6.15e-21 | 97.4 |
| Msa0342760 | MtrunA17_Chr6g0470871 | 53.448 | 58 | 27 | 0 | 23 | 80 | 16 | 73 | 6.80e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0342760 | AT4G15880.1 | 26.449 | 276 | 165 | 11 | 419 | 688 | 246 | 489 | 1.18e-13 | 74.7 |
| Msa0342760 | AT4G00690.1 | 25.229 | 218 | 140 | 8 | 477 | 688 | 141 | 341 | 2.42e-13 | 72.4 |
Find 182 sgRNAs with CRISPR-Local
Find 415 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 3_1:+727287 | Msa0342760:CDS |
| GATACAGTTATACACATTTC+TGG | 0.200591 | 3_1:+727382 | Msa0342760:CDS |
| CTAGACCTTTGTTTGGCTTT+AGG | 0.220943 | 3_1:+727019 | Msa0342760:CDS |
| ATGCGTGGAAAACGCTTAAT+TGG | 0.267383 | 3_1:-727551 | None:intergenic |
| TGAGGTAGTTGATGATTTAA+AGG | 0.268632 | 3_1:+728786 | Msa0342760:CDS |
| AGATATGTTGGAATCTTCTT+TGG | 0.268674 | 3_1:+729755 | Msa0342760:CDS |
| TGAGGGAAAACAAACGAAAA+AGG | 0.283246 | 3_1:+726666 | Msa0342760:CDS |
| ACAAAGGTCTAGATGTTTAA+AGG | 0.286497 | 3_1:-727008 | None:intergenic |
| TATATAGATAAAGGGGTATT+AGG | 0.287945 | 3_1:-731728 | None:intergenic |
| AGAAATACATATATAGATAA+AGG | 0.290515 | 3_1:-731737 | None:intergenic |
| TTAATATAACTGTGTGATTT+CGG | 0.290724 | 3_1:-727232 | None:intergenic |
| GAGGATATTAAAAGCAAATA+AGG | 0.296971 | 3_1:+727933 | Msa0342760:CDS |
| TGTGGGATGGTGAAGCAAAA+TGG | 0.309075 | 3_1:+729945 | Msa0342760:CDS |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 3_1:+727288 | Msa0342760:CDS |
| ATTTACCAAAGCAACAAAAT+TGG | 0.312599 | 3_1:+729793 | Msa0342760:CDS |
| TTATCGAAGGTCATATATAA+AGG | 0.331004 | 3_1:+731796 | Msa0342760:three_prime_UTR |
| GCTTTAGGTTTGCCTATTGT+AGG | 0.336005 | 3_1:+727034 | Msa0342760:CDS |
| GCTTAATTGGACCACTGGTT+AGG | 0.336914 | 3_1:-727538 | None:intergenic |
| CATTGGAGTTTACGTCCTTC+AGG | 0.346042 | 3_1:-728814 | None:intergenic |
| CCTTAGGTTATTAATATTGC+TGG | 0.350091 | 3_1:+728599 | Msa0342760:intron |
| AACACAAAGATTTGCTTTCC+CGG | 0.362338 | 3_1:+727887 | Msa0342760:CDS |
| AACAGCAACACCCCAATTAT+AGG | 0.367016 | 3_1:-727299 | None:intergenic |
| TCTATATATGTATTTCTTTG+AGG | 0.369379 | 3_1:+731743 | Msa0342760:three_prime_UTR |
| ATGTCCAGTGGTCTTCGAAC+TGG | 0.369613 | 3_1:-729493 | None:intergenic |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 3_1:+727799 | Msa0342760:CDS |
| ATAAAGGGGTATTAGGATAA+AGG | 0.373190 | 3_1:-731721 | None:intergenic |
| AATAAAGGAGCGAACAATAA+AGG | 0.374187 | 3_1:+729732 | Msa0342760:CDS |
| GAAATACATATATAGATAAA+GGG | 0.379203 | 3_1:-731736 | None:intergenic |
| GTAGATGAGTTGCGTGTTGC+CGG | 0.380253 | 3_1:+728464 | Msa0342760:CDS |
| TGGTTGCCCAGCCGTATTGC+AGG | 0.381669 | 3_1:+727402 | Msa0342760:CDS |
| GTTTACCGGAAACTAGTGAT+AGG | 0.386283 | 3_1:+727062 | Msa0342760:CDS |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 3_1:-727159 | None:intergenic |
| TGCAGTATCTAATACAAATC+TGG | 0.391438 | 3_1:-731575 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 3_1:-727982 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 3_1:+727729 | Msa0342760:intron |
| GTGGGATGGTGAAGCAAAAT+GGG | 0.404332 | 3_1:+729946 | Msa0342760:CDS |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 3_1:+726902 | Msa0342760:CDS |
| AAATGCCTCAAGGCAGCGTT+TGG | 0.407622 | 3_1:+729577 | Msa0342760:CDS |
| GTAGTGGAATTGATGAATAA+AGG | 0.409455 | 3_1:+729717 | Msa0342760:CDS |
| TTTGTCTAACTTGATTGTGC+TGG | 0.411331 | 3_1:+731635 | Msa0342760:three_prime_UTR |
| CTAACCCTATCACTAGTTTC+CGG | 0.415358 | 3_1:-727067 | None:intergenic |
| CAGTGAAATTGTTTGTCGTC+TGG | 0.416799 | 3_1:+731528 | Msa0342760:CDS |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 3_1:-726915 | None:intergenic |
| TAAACATCTAGACCTTTGTT+TGG | 0.421249 | 3_1:+727012 | Msa0342760:CDS |
| ACTTCCTCGCCTTCATGCAT+TGG | 0.432506 | 3_1:-728496 | None:intergenic |
| GGAGTTGGATGATGATGATA+TGG | 0.432653 | 3_1:+728233 | Msa0342760:CDS |
| TGATGATGATATGGCTGAAA+AGG | 0.433309 | 3_1:+728242 | Msa0342760:CDS |
| TTTATTCTGCACACATGAAA+AGG | 0.433361 | 3_1:+728311 | Msa0342760:CDS |
| CTTAATTGGACCACTGGTTA+GGG | 0.433873 | 3_1:-727537 | None:intergenic |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 3_1:+726925 | Msa0342760:CDS |
| GGTATATGTTCTTAAGTACT+TGG | 0.444660 | 3_1:+729919 | Msa0342760:CDS |
| TATGTTGGAATCTTCTTTGG+AGG | 0.445095 | 3_1:+729758 | Msa0342760:CDS |
| TTCAATACCTGCAATACGGC+TGG | 0.445664 | 3_1:-727409 | None:intergenic |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 3_1:-726892 | None:intergenic |
| AGCAAATAAGGTTGACGGTA+GGG | 0.449525 | 3_1:+727945 | Msa0342760:CDS |
| TTGGAAGAAGAAAATGATGA+TGG | 0.450909 | 3_1:+728141 | Msa0342760:CDS |
| TTCTTTGGAGGTTGTAGTGG+TGG | 0.452564 | 3_1:+729770 | Msa0342760:CDS |
| TTTGCGCATCAGACAATGTT+CGG | 0.454164 | 3_1:-726844 | None:intergenic |
| GGTAAACACTCTCCTACAAT+AGG | 0.455224 | 3_1:-727046 | None:intergenic |
| TGAATTTCCGCTCAGTCCAT+TGG | 0.455335 | 3_1:-728831 | None:intergenic |
| TTCTTAAGTACTTGGAGTTG+TGG | 0.459941 | 3_1:+729927 | Msa0342760:CDS |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 3_1:+728036 | Msa0342760:CDS |
| TAGATGAGTTGCGTGTTGCC+GGG | 0.464352 | 3_1:+728465 | Msa0342760:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.466558 | 3_1:+727723 | Msa0342760:intron |
| TATCTACCAACTTATTAGTA+CGG | 0.467587 | 3_1:-726817 | None:intergenic |
| ATCTACCAACTTATTAGTAC+GGG | 0.467987 | 3_1:-726816 | None:intergenic |
| AGGTGGGATGCAAGTAGCTT+GGG | 0.470670 | 3_1:+726959 | Msa0342760:CDS |
| TGGGATTTAGAGTAGGCGTT+AGG | 0.472541 | 3_1:+726978 | Msa0342760:CDS |
| GGAAAGCAAATCTTTGTGTT+CGG | 0.477390 | 3_1:-727884 | None:intergenic |
| TCTTAAGTACTTGGAGTTGT+GGG | 0.482984 | 3_1:+729928 | Msa0342760:CDS |
| TAATATTCGTTGGTGTATCA+TGG | 0.485490 | 3_1:+731688 | Msa0342760:three_prime_UTR |
| CATGTTACGTGTTGGACCAT+AGG | 0.488808 | 3_1:+729513 | Msa0342760:CDS |
| AATATTCAATACCTGCAATA+CGG | 0.491166 | 3_1:-727413 | None:intergenic |
| TATTGTAGGAGAGTGTTTAC+CGG | 0.495009 | 3_1:+727048 | Msa0342760:CDS |
| AGAAAATGATGGGATGAAGT+TGG | 0.497063 | 3_1:+728086 | Msa0342760:CDS |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 3_1:+726942 | Msa0342760:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 3_1:-727794 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 3_1:-727585 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 3_1:+727148 | Msa0342760:CDS |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 3_1:-727905 | None:intergenic |
| TAAAGACAATGGGATGGAGT+TGG | 0.505100 | 3_1:+728218 | Msa0342760:CDS |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 3_1:-727801 | None:intergenic |
| CATACATTGTCCTCTTCCTA+TGG | 0.507544 | 3_1:-729529 | None:intergenic |
| AGCATTACCAATGAATAGTC+GGG | 0.509033 | 3_1:-729983 | None:intergenic |
| ATGGAAGAAGATAAAGACAA+TGG | 0.509362 | 3_1:+728207 | Msa0342760:CDS |
| TAGGTGGGATGCAAGTAGCT+TGG | 0.510938 | 3_1:+726958 | Msa0342760:CDS |
| AAGCATTACCAATGAATAGT+CGG | 0.511109 | 3_1:-729984 | None:intergenic |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 3_1:+726911 | Msa0342760:CDS |
| ATCTTCTTTGGAGGTTGTAG+TGG | 0.519883 | 3_1:+729767 | Msa0342760:CDS |
| TGGAAGAAGATAAAGACAAT+GGG | 0.520727 | 3_1:+728208 | Msa0342760:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.520859 | 3_1:+727793 | Msa0342760:CDS |
| GAAGAGGACAATGTATGTGC+TGG | 0.521423 | 3_1:+729535 | Msa0342760:CDS |
| AGGTTATTAATATTGCTGGC+AGG | 0.523648 | 3_1:+728603 | Msa0342760:intron |
| ACTTACAGGAGGATATCCTT+CGG | 0.524242 | 3_1:+731500 | Msa0342760:intron |
| TTAAAAGCAAATAAGGTTGA+CGG | 0.525394 | 3_1:+727940 | Msa0342760:CDS |
| AACTCCGTTCCGATATCTTG+TGG | 0.528157 | 3_1:+726883 | Msa0342760:CDS |
| GGAAAAGCAGAAGAAAATGA+TGG | 0.528960 | 3_1:+728075 | Msa0342760:CDS |
| AATGCCCCGTACTAATAAGT+TGG | 0.529713 | 3_1:+726811 | Msa0342760:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 3_1:+728054 | Msa0342760:CDS |
| CCGCAACGCCTCAAGTGTCT+TGG | 0.532629 | 3_1:-728875 | None:intergenic |
| AATGCATGAAGGCGAGGAAG+TGG | 0.532769 | 3_1:+728498 | Msa0342760:CDS |
| ATACCCGCGGATTTATTGAT+CGG | 0.534688 | 3_1:+731601 | Msa0342760:CDS |
| AAAACGCTTAATTGGACCAC+TGG | 0.534869 | 3_1:-727543 | None:intergenic |
| GAGTATGCCCGACTATTCAT+TGG | 0.535075 | 3_1:+729976 | Msa0342760:CDS |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 3_1:+727149 | Msa0342760:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.543023 | 3_1:+727888 | Msa0342760:CDS |
| GAACAATAAAGGAGATATGT+TGG | 0.549679 | 3_1:+729743 | Msa0342760:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 3_1:+727914 | Msa0342760:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.550916 | 3_1:+727854 | Msa0342760:CDS |
| TGTCCAGTGGTCTTCGAACT+GGG | 0.551007 | 3_1:-729492 | None:intergenic |
| GGCATTTGAGTCTTTATCTG+TGG | 0.552622 | 3_1:-726794 | None:intergenic |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 3_1:+727985 | Msa0342760:CDS |
| TTTACCGGAAACTAGTGATA+GGG | 0.559975 | 3_1:+727063 | Msa0342760:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 3_1:+726943 | Msa0342760:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 3_1:+727972 | Msa0342760:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 3_1:+727903 | Msa0342760:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 3_1:-727906 | None:intergenic |
| TCAAGATGTATATGCCTCGT+TGG | 0.564996 | 3_1:+728851 | Msa0342760:CDS |
| AAGCAAATAAGGTTGACGGT+AGG | 0.567979 | 3_1:+727944 | Msa0342760:CDS |
| AGAAAATGATGATGGGATGA+AGG | 0.570797 | 3_1:+728149 | Msa0342760:CDS |
| ATTCCACTACCCCTTCAAAA+CGG | 0.572945 | 3_1:-729704 | None:intergenic |
| CAACCCAGTTCGAAGACCAC+TGG | 0.574509 | 3_1:+729489 | Msa0342760:CDS |
| CATGATGAAGTTCGAAAACA+TGG | 0.575114 | 3_1:+728635 | Msa0342760:CDS |
| AAATACATATATAGATAAAG+GGG | 0.575274 | 3_1:-731735 | None:intergenic |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 3_1:-727918 | None:intergenic |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 3_1:+727858 | Msa0342760:CDS |
| AGATGAGTTGCGTGTTGCCG+GGG | 0.584197 | 3_1:+728466 | Msa0342760:CDS |
| AGTAGCTTGGGATTTAGAGT+AGG | 0.584499 | 3_1:+726971 | Msa0342760:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 3_1:-727566 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 3_1:-727976 | None:intergenic |
| AGAAGATAAAGACAATGGGA+TGG | 0.587623 | 3_1:+728212 | Msa0342760:CDS |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 3_1:+726939 | Msa0342760:CDS |
| CTGAAGGACGTAAACTCCAA+TGG | 0.587862 | 3_1:+728815 | Msa0342760:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 3_1:+727333 | Msa0342760:CDS |
| GAAGGTTGATGATGAAGATG+TGG | 0.591676 | 3_1:+728167 | Msa0342760:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 3_1:+727135 | Msa0342760:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 3_1:+727575 | Msa0342760:CDS |
| GAAAAGCAGAAGAAAATGAT+GGG | 0.594943 | 3_1:+728076 | Msa0342760:CDS |
| CAGTGGTCTTCGAACTGGGT+TGG | 0.595890 | 3_1:-729488 | None:intergenic |
| ATGCATGAAGGCGAGGAAGT+GGG | 0.596800 | 3_1:+728499 | Msa0342760:CDS |
| TAACCGATCAATAAATCCGC+GGG | 0.596912 | 3_1:-731604 | None:intergenic |
| GATTTAAAGGCACATCCTGA+AGG | 0.597377 | 3_1:+728799 | Msa0342760:CDS |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 3_1:+727571 | Msa0342760:CDS |
| TCAATACCTGCAATACGGCT+GGG | 0.600754 | 3_1:-727408 | None:intergenic |
| TGATGAAGATGTTGGTGAAG+AGG | 0.600999 | 3_1:+728110 | Msa0342760:CDS |
| CCACTGGACATGTTACGTGT+TGG | 0.601741 | 3_1:+729505 | Msa0342760:CDS |
| ACGTGTTGGACCATAGGAAG+AGG | 0.602868 | 3_1:+729519 | Msa0342760:CDS |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 3_1:+726985 | Msa0342760:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 3_1:+727979 | Msa0342760:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 3_1:+728000 | Msa0342760:CDS |
| TGGAAGAAGAAAATGATGAT+GGG | 0.616216 | 3_1:+728142 | Msa0342760:CDS |
| CCAAGACACTTGAGGCGTTG+CGG | 0.618422 | 3_1:+728875 | Msa0342760:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 3_1:+727750 | Msa0342760:CDS |
| TGGGATGGTGAAGCAAAATG+GGG | 0.623459 | 3_1:+729947 | Msa0342760:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 3_1:+728053 | Msa0342760:CDS |
| GCAGCGTTTGGATAATGCAA+TGG | 0.628794 | 3_1:+729589 | Msa0342760:CDS |
| GTCATTTGATTAGATATGGG+CGG | 0.632926 | 3_1:+727502 | Msa0342760:intron |
| CAATTTCACTGCGAATCCGA+AGG | 0.633824 | 3_1:-731516 | None:intergenic |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 3_1:+727150 | Msa0342760:CDS |
| AAGTACTTGGAGTTGTGGGA+TGG | 0.635913 | 3_1:+729932 | Msa0342760:CDS |
| AAGGTTGATGATGAAGATGT+GGG | 0.641554 | 3_1:+728168 | Msa0342760:CDS |
| AAGTTGGATGATGAAGATGT+TGG | 0.645218 | 3_1:+728102 | Msa0342760:CDS |
| ATTATCCAAACGCTGCCTTG+AGG | 0.647660 | 3_1:-729582 | None:intergenic |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 3_1:-727212 | None:intergenic |
| ACAGTGAAAGAAATGCCTCA+AGG | 0.655287 | 3_1:+729567 | Msa0342760:CDS |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 3_1:+728037 | Msa0342760:CDS |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 3_1:+728050 | Msa0342760:CDS |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 3_1:+727578 | Msa0342760:CDS |
| GCAAACCTAAAGCCAAACAA+AGG | 0.673782 | 3_1:-727024 | None:intergenic |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 3_1:+727986 | Msa0342760:CDS |
| TCGTTGGACCAAGACACTTG+AGG | 0.677045 | 3_1:+728867 | Msa0342760:CDS |
| GAACATTTATCCCTAACCAG+TGG | 0.678694 | 3_1:+727527 | Msa0342760:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 3_1:+727289 | Msa0342760:CDS |
| TTAACCGATCAATAAATCCG+CGG | 0.698985 | 3_1:-731605 | None:intergenic |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 3_1:-726887 | None:intergenic |
| CCAACACGTAACATGTCCAG+TGG | 0.705795 | 3_1:-729505 | None:intergenic |
| GTAAACTCCAATGGACTGAG+CGG | 0.711805 | 3_1:+728824 | Msa0342760:CDS |
| TCAAGTGTCTTGGTCCAACG+AGG | 0.711931 | 3_1:-728865 | None:intergenic |
| AGATACTGCAAAGATACCCG+CGG | 0.714457 | 3_1:+731588 | Msa0342760:CDS |
| GGGATGGTGAAGCAAAATGG+GGG | 0.720669 | 3_1:+729948 | Msa0342760:CDS |
| AAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 3_1:+728026 | Msa0342760:CDS |
| TCTACCAACTTATTAGTACG+GGG | 0.745691 | 3_1:-726815 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAATTAAAACAAAAA+AGG | - | chr3_1:728554-728573 | None:intergenic | 10.0% |
| !! | TATTTAATCGTAAAATAAAT+TGG | - | chr3_1:730243-730262 | None:intergenic | 10.0% |
| !!! | TTTTCATTTAAAAAAAATTG+AGG | - | chr3_1:730740-730759 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTTAAAGTGTT+TGG | + | chr3_1:731223-731242 | Msa0342760:intron | 10.0% |
| !! | TACTAAATACTAATATATTA+TGG | + | chr3_1:731439-731458 | Msa0342760:intron | 10.0% |
| !! | ACTAAATACTAATATATTAT+GGG | + | chr3_1:731440-731459 | Msa0342760:intron | 10.0% |
| !! | ATTAAAACAAAAAAGGTTAA+CGG | - | chr3_1:728547-728566 | None:intergenic | 15.0% |
| !!! | AATTTTGTCAGATTATTTTT+CGG | + | chr3_1:728673-728692 | Msa0342760:CDS | 15.0% |
| !!! | AACTCTTAAATAAATTGTTT+TGG | + | chr3_1:729619-729638 | Msa0342760:intron | 15.0% |
| !! | CTAAATACTAATATATTATG+GGG | + | chr3_1:731441-731460 | Msa0342760:intron | 15.0% |
| !! | AAATACATATATAGATAAAG+GGG | - | chr3_1:731738-731757 | None:intergenic | 15.0% |
| !! | GAAATACATATATAGATAAA+GGG | - | chr3_1:731739-731758 | None:intergenic | 15.0% |
| !! | AGAAATACATATATAGATAA+AGG | - | chr3_1:731740-731759 | None:intergenic | 15.0% |
| !! | TTAATATAACTGTGTGATTT+CGG | - | chr3_1:727235-727254 | None:intergenic | 20.0% |
| !!! | ATTTGTCATTTGATTAGATA+TGG | + | chr3_1:727498-727517 | Msa0342760:intron | 20.0% |
| !!! | TTTGTCATTTGATTAGATAT+GGG | + | chr3_1:727499-727518 | Msa0342760:intron | 20.0% |
| !! | TTATAATTAATGTTAGGCAT+GGG | - | chr3_1:728758-728777 | None:intergenic | 20.0% |
| !! | ATTATAATTAATGTTAGGCA+TGG | - | chr3_1:728759-728778 | None:intergenic | 20.0% |
| !! | CTGCAATTATAATTAATGTT+AGG | - | chr3_1:728764-728783 | None:intergenic | 20.0% |
| !! | TTAATTATAATTGCAGTTTG+AGG | + | chr3_1:728768-728787 | Msa0342760:intron | 20.0% |
| !! | TCATTGACATCAAATTTATT+AGG | - | chr3_1:729387-729406 | None:intergenic | 20.0% |
| !! | TTGATATATTACTTGTGTAT+AGG | + | chr3_1:729847-729866 | Msa0342760:intron | 20.0% |
| !! | TGATATATTACTTGTGTATA+GGG | + | chr3_1:729848-729867 | Msa0342760:intron | 20.0% |
| !! | AATAACTCACTAGAATATAT+GGG | + | chr3_1:730383-730402 | Msa0342760:intron | 20.0% |
| !! | TTGTTTGAGGAAAATAAAAA+TGG | + | chr3_1:730411-730430 | Msa0342760:intron | 20.0% |
| !! | TATTTGACAGGAATAAAAAT+GGG | - | chr3_1:730569-730588 | None:intergenic | 20.0% |
| !! | TTCAACAATCAATTTCATAT+AGG | - | chr3_1:730665-730684 | None:intergenic | 20.0% |
| !!! | CAAGAATTATTTTCTTTTGT+CGG | + | chr3_1:730780-730799 | Msa0342760:intron | 20.0% |
| !!! | ATGATTTTATTTTCAAACGA+GGG | - | chr3_1:731349-731368 | None:intergenic | 20.0% |
| !! | TCGTTTGAAAATAAAATCAT+GGG | + | chr3_1:731349-731368 | Msa0342760:intron | 20.0% |
| !! | TCTATATATGTATTTCTTTG+AGG | + | chr3_1:731743-731762 | Msa0342760:three_prime_UTR | 20.0% |
| !! | TTCGATAACAAAACAAAAAA+AGG | - | chr3_1:731784-731803 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTTGTTATCGA+AGG | + | chr3_1:731783-731802 | Msa0342760:three_prime_UTR | 20.0% |
| ! | CAACAGTATTCATTCATTAA+TGG | - | chr3_1:726765-726784 | None:intergenic | 25.0% |
| ! | TATCTACCAACTTATTAGTA+CGG | - | chr3_1:726820-726839 | None:intergenic | 25.0% |
| ! | AATGAATGGTACTTTATTGA+AGG | + | chr3_1:726925-726944 | Msa0342760:CDS | 25.0% |
| ! | TATTGAAGGAATTATTGCAT+AGG | + | chr3_1:726939-726958 | Msa0342760:CDS | 25.0% |
| ! | AATTGAAAATCTTAGTAGTG+CGG | + | chr3_1:727333-727352 | Msa0342760:CDS | 25.0% |
| ! | AATATTCAATACCTGCAATA+CGG | - | chr3_1:727416-727435 | None:intergenic | 25.0% |
| !!! | TGCAGGTATTGAATATTAAA+TGG | + | chr3_1:727419-727438 | Msa0342760:intron | 25.0% |
| !!! | GCAGGTATTGAATATTAAAT+GGG | + | chr3_1:727420-727439 | Msa0342760:intron | 25.0% |
| ! | TTGCCTTTAGTATATTAACT+CGG | + | chr3_1:727646-727665 | Msa0342760:intron | 25.0% |
| ! | TTACCGAGTTAATATACTAA+AGG | - | chr3_1:727652-727671 | None:intergenic | 25.0% |
| ! | TAGTATATTAACTCGGTAAA+TGG | + | chr3_1:727653-727672 | Msa0342760:intron | 25.0% |
| ! | AGTATATTAACTCGGTAAAT+GGG | + | chr3_1:727654-727673 | Msa0342760:intron | 25.0% |
| ! | ACCTATTTAATGTGATTAGT+TGG | + | chr3_1:727717-727736 | Msa0342760:intron | 25.0% |
| ! | ACCAACTAATCACATTAAAT+AGG | - | chr3_1:727721-727740 | None:intergenic | 25.0% |
| ! | GAGGATATTAAAAGCAAATA+AGG | + | chr3_1:727933-727952 | Msa0342760:CDS | 25.0% |
| ! | TTAAAAGCAAATAAGGTTGA+CGG | + | chr3_1:727940-727959 | Msa0342760:CDS | 25.0% |
| !!! | TTTTTTTAGTGTGTTATGTG+AGG | + | chr3_1:728442-728461 | Msa0342760:intron | 25.0% |
| ! | ATATTAATAACCTAAGGCAA+TGG | - | chr3_1:728596-728615 | None:intergenic | 25.0% |
| ! | ATACTCTAATGAAAGAAAAC+AGG | - | chr3_1:729056-729075 | None:intergenic | 25.0% |
| ! | ATATTTGAATTGACAGAACA+AGG | + | chr3_1:729100-729119 | Msa0342760:intron | 25.0% |
| ! | TCAAATATAGAGAATAATGC+TGG | + | chr3_1:729175-729194 | Msa0342760:intron | 25.0% |
| ! | AAACAAAACTCGCAAAATTA+GGG | - | chr3_1:729345-729364 | None:intergenic | 25.0% |
| ! | AAAACAAAACTCGCAAAATT+AGG | - | chr3_1:729346-729365 | None:intergenic | 25.0% |
| ! | ATTTACCAAAGCAACAAAAT+TGG | + | chr3_1:729793-729812 | Msa0342760:CDS | 25.0% |
| !! | GCTTTCAGTTTTCAATATAT+TGG | - | chr3_1:730174-730193 | None:intergenic | 25.0% |
| ! | AATTAGAATTGTTAAGACTC+AGG | + | chr3_1:730194-730213 | Msa0342760:intron | 25.0% |
| ! | TGAATGTTGTATCTATTGTT+TGG | + | chr3_1:730281-730300 | Msa0342760:intron | 25.0% |
| ! | GAATGTTGTATCTATTGTTT+GGG | + | chr3_1:730282-730301 | Msa0342760:intron | 25.0% |
| ! | CCCTTATAATTCCAAAAATA+CGG | - | chr3_1:730328-730347 | None:intergenic | 25.0% |
| !!! | CCGTATTTTTGGAATTATAA+GGG | + | chr3_1:730325-730344 | Msa0342760:intron | 25.0% |
| !!! | CGTATTTTTGGAATTATAAG+GGG | + | chr3_1:730326-730345 | Msa0342760:intron | 25.0% |
| !!! | ATGTTATGTTAATTTGTTCC+CGG | + | chr3_1:730359-730378 | Msa0342760:intron | 25.0% |
| ! | GAATAACTCACTAGAATATA+TGG | + | chr3_1:730382-730401 | Msa0342760:intron | 25.0% |
| !!! | ACTGTCATTATTTTTTTCCT+GGG | - | chr3_1:730520-730539 | None:intergenic | 25.0% |
| !!! | AACTGTCATTATTTTTTTCC+TGG | - | chr3_1:730521-730540 | None:intergenic | 25.0% |
| ! | CTATTTGACAGGAATAAAAA+TGG | - | chr3_1:730570-730589 | None:intergenic | 25.0% |
| !! | CATTTTTATTCCTGTCAAAT+AGG | + | chr3_1:730568-730587 | Msa0342760:intron | 25.0% |
| !! | ATTTTCACAGAAATTTACCT+GGG | - | chr3_1:730610-730629 | None:intergenic | 25.0% |
| ! | AACAATCAATTTCATATAGG+AGG | - | chr3_1:730662-730681 | None:intergenic | 25.0% |
| ! | CATGTGATATCAATATTTCT+TGG | + | chr3_1:730690-730709 | Msa0342760:intron | 25.0% |
| !! | GATAATTTTCTTTGTTCCAT+TGG | + | chr3_1:730804-730823 | Msa0342760:intron | 25.0% |
| !!! | TAATTCCTGGGAATTTTTTA+TGG | - | chr3_1:731056-731075 | None:intergenic | 25.0% |
| ! | TGTTCAATAGTATAATTCCT+GGG | - | chr3_1:731068-731087 | None:intergenic | 25.0% |
| ! | TTGTTCAATAGTATAATTCC+TGG | - | chr3_1:731069-731088 | None:intergenic | 25.0% |
| ! | ATTCCAACATTTATATTCCT+GGG | + | chr3_1:731120-731139 | Msa0342760:intron | 25.0% |
| ! | TAAAATTGAAACCCAAGAAT+AGG | - | chr3_1:731208-731227 | None:intergenic | 25.0% |
| !!! | CATGATTTTATTTTCAAACG+AGG | - | chr3_1:731350-731369 | None:intergenic | 25.0% |
| ! | CTCGTTTGAAAATAAAATCA+TGG | + | chr3_1:731348-731367 | Msa0342760:intron | 25.0% |
| !!! | TATATAGATAAAGGGGTATT+AGG | - | chr3_1:731731-731750 | None:intergenic | 25.0% |
| ! | TTATCGAAGGTCATATATAA+AGG | + | chr3_1:731796-731815 | Msa0342760:three_prime_UTR | 25.0% |
| ATCTACCAACTTATTAGTAC+GGG | - | chr3_1:726819-726838 | None:intergenic | 30.0% | |
| TCTTCATATCCACAAGATAT+CGG | - | chr3_1:726895-726914 | None:intergenic | 30.0% | |
| AAGACCTATATAGGAATGAA+TGG | + | chr3_1:726911-726930 | Msa0342760:CDS | 30.0% | |
| AGTACCATTCATTCCTATAT+AGG | - | chr3_1:726918-726937 | None:intergenic | 30.0% | |
| ACAAAGGTCTAGATGTTTAA+AGG | - | chr3_1:727011-727030 | None:intergenic | 30.0% | |
| TAAACATCTAGACCTTTGTT+TGG | + | chr3_1:727012-727031 | Msa0342760:CDS | 30.0% | |
| ! | CTGTATCATTCTTTTGTTGA+TGG | - | chr3_1:727369-727388 | None:intergenic | 30.0% |
| GATACAGTTATACACATTTC+TGG | + | chr3_1:727382-727401 | Msa0342760:CDS | 30.0% | |
| !!! | AAACCTTTTTTCAAATGCGA+AGG | + | chr3_1:727616-727635 | Msa0342760:CDS | 30.0% |
| TAACCTTCGCATTTGAAAAA+AGG | - | chr3_1:727622-727641 | None:intergenic | 30.0% | |
| ! | TTAATGTGATTAGTTGGTTG+AGG | + | chr3_1:727723-727742 | Msa0342760:intron | 30.0% |
| AAGCTTGCACATCAAAAAAA+GGG | - | chr3_1:727837-727856 | None:intergenic | 30.0% | |
| TAAGCTTGCACATCAAAAAA+AGG | - | chr3_1:727838-727857 | None:intergenic | 30.0% | |
| ! | TTTTGATGTGCAAGCTTATA+TGG | + | chr3_1:727840-727859 | Msa0342760:CDS | 30.0% |
| AAAGTGTAGTAAGATTGATG+CGG | + | chr3_1:728026-728045 | Msa0342760:CDS | 30.0% | |
| GAAAAGCAGAAGAAAATGAT+GGG | + | chr3_1:728076-728095 | Msa0342760:CDS | 30.0% | |
| TGGTGAAGAGGAAAAAAAAT+TGG | + | chr3_1:728122-728141 | Msa0342760:CDS | 30.0% | |
| TTGGAAGAAGAAAATGATGA+TGG | + | chr3_1:728141-728160 | Msa0342760:CDS | 30.0% | |
| TGGAAGAAGAAAATGATGAT+GGG | + | chr3_1:728142-728161 | Msa0342760:CDS | 30.0% | |
| GGGTGAAGAAGAAAAAAAAA+TGG | + | chr3_1:728188-728207 | Msa0342760:CDS | 30.0% | |
| ATGGAAGAAGATAAAGACAA+TGG | + | chr3_1:728207-728226 | Msa0342760:CDS | 30.0% | |
| TGGAAGAAGATAAAGACAAT+GGG | + | chr3_1:728208-728227 | Msa0342760:CDS | 30.0% | |
| TGGCTGAAAAGGAAAAAAAA+AGG | + | chr3_1:728253-728272 | Msa0342760:CDS | 30.0% | |
| TTTATTCTGCACACATGAAA+AGG | + | chr3_1:728311-728330 | Msa0342760:CDS | 30.0% | |
| !!! | AACTACATTTTTTCATGTCG+CGG | + | chr3_1:728373-728392 | Msa0342760:intron | 30.0% |
| CCAGCAATATTAATAACCTA+AGG | - | chr3_1:728602-728621 | None:intergenic | 30.0% | |
| CCTTAGGTTATTAATATTGC+TGG | + | chr3_1:728599-728618 | Msa0342760:intron | 30.0% | |
| !! | TGTCAGATTATTTTTCGGTA+CGG | + | chr3_1:728678-728697 | Msa0342760:intron | 30.0% |
| TAAAGGTTGAATACACATCA+CGG | - | chr3_1:728731-728750 | None:intergenic | 30.0% | |
| !! | TGAGGTAGTTGATGATTTAA+AGG | + | chr3_1:728786-728805 | Msa0342760:CDS | 30.0% |
| AGTCATCATTATGATGTTGT+AGG | + | chr3_1:728932-728951 | Msa0342760:intron | 30.0% | |
| !!! | AGGAGTTTGCTGATTTATTT+TGG | + | chr3_1:729120-729139 | Msa0342760:intron | 30.0% |
| !!! | CATTGTGGTTTTGTCTATAT+GGG | + | chr3_1:729234-729253 | Msa0342760:intron | 30.0% |
| AACAAAACTCGCAAAATTAG+GGG | - | chr3_1:729344-729363 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATTGATGAATAA+AGG | + | chr3_1:729717-729736 | Msa0342760:CDS | 30.0% |
| AATAAAGGAGCGAACAATAA+AGG | + | chr3_1:729732-729751 | Msa0342760:CDS | 30.0% | |
| GAACAATAAAGGAGATATGT+TGG | + | chr3_1:729743-729762 | Msa0342760:CDS | 30.0% | |
| AGATATGTTGGAATCTTCTT+TGG | + | chr3_1:729755-729774 | Msa0342760:CDS | 30.0% | |
| !! | ACTAACCAATTTTGTTGCTT+TGG | - | chr3_1:729801-729820 | None:intergenic | 30.0% |
| ! | AAATTTTGCAGTCATGATTG+TGG | + | chr3_1:729896-729915 | Msa0342760:intron | 30.0% |
| ! | AATTTTGCAGTCATGATTGT+GGG | + | chr3_1:729897-729916 | Msa0342760:intron | 30.0% |
| GGTATATGTTCTTAAGTACT+TGG | + | chr3_1:729919-729938 | Msa0342760:CDS | 30.0% | |
| AAGCATTACCAATGAATAGT+CGG | - | chr3_1:729987-730006 | None:intergenic | 30.0% | |
| CAATTAATCATCATTGACAG+CGG | + | chr3_1:730088-730107 | Msa0342760:intron | 30.0% | |
| GCAATTAGGCTGTATATTTA+GGG | - | chr3_1:730142-730161 | None:intergenic | 30.0% | |
| TGCAATTAGGCTGTATATTT+AGG | - | chr3_1:730143-730162 | None:intergenic | 30.0% | |
| !! | CTATTGTTTGGGTTTTTAAC+TGG | + | chr3_1:730293-730312 | Msa0342760:intron | 30.0% |
| !!! | GCCGTATTTTTGGAATTATA+AGG | + | chr3_1:730324-730343 | Msa0342760:intron | 30.0% |
| !! | TGTTATGTTAATTTGTTCCC+GGG | + | chr3_1:730360-730379 | Msa0342760:intron | 30.0% |
| ATATTCTAGTGAGTTATTCC+CGG | - | chr3_1:730381-730400 | None:intergenic | 30.0% | |
| GAATTACATATGCCATTGTT+TGG | + | chr3_1:730454-730473 | Msa0342760:intron | 30.0% | |
| GGAACAAAAAAAATATGCCT+TGG | + | chr3_1:730483-730502 | Msa0342760:intron | 30.0% | |
| AATAAAAATGGGCAAAACGT+GGG | - | chr3_1:730558-730577 | None:intergenic | 30.0% | |
| TTATTCCTGTCAAATAGGAT+TGG | + | chr3_1:730573-730592 | Msa0342760:intron | 30.0% | |
| ! | GATTTTCACAGAAATTTACC+TGG | - | chr3_1:730611-730630 | None:intergenic | 30.0% |
| ATAGAAGTCCAAACTCAATT+GGG | - | chr3_1:730837-730856 | None:intergenic | 30.0% | |
| !!! | GACTTCTATGCATTGATTTT+GGG | + | chr3_1:730848-730867 | Msa0342760:intron | 30.0% |
| !!! | CACTTTTTTCTACAATTTCC+TGG | + | chr3_1:731090-731109 | Msa0342760:intron | 30.0% |
| ! | AATGTTGGAATCTTATTTCC+AGG | - | chr3_1:731111-731130 | None:intergenic | 30.0% |
| GATTCCAACATTTATATTCC+TGG | + | chr3_1:731119-731138 | Msa0342760:intron | 30.0% | |
| TTTCCCAGGAATATAAATGT+TGG | - | chr3_1:731126-731145 | None:intergenic | 30.0% | |
| GGGTTACAAAATTAATACCT+GGG | - | chr3_1:731155-731174 | None:intergenic | 30.0% | |
| AGGGTTACAAAATTAATACC+TGG | - | chr3_1:731156-731175 | None:intergenic | 30.0% | |
| AATAGGATTCCCAACATTTA+GGG | - | chr3_1:731191-731210 | None:intergenic | 30.0% | |
| TATATTTCATTCCGATCTCA+CGG | + | chr3_1:731308-731327 | Msa0342760:intron | 30.0% | |
| !! | TTTATTTTCAAACGAGGGTT+GGG | - | chr3_1:731344-731363 | None:intergenic | 30.0% |
| !!! | TTTTATTTTCAAACGAGGGT+TGG | - | chr3_1:731345-731364 | None:intergenic | 30.0% |
| TGTGTAAGTTATTTGTTTCC+AGG | + | chr3_1:731373-731392 | Msa0342760:intron | 30.0% | |
| ACTGTGTATAAAACATTTCC+TGG | - | chr3_1:731394-731413 | None:intergenic | 30.0% | |
| TTATACACAGTAACACACAT+TGG | + | chr3_1:731403-731422 | Msa0342760:intron | 30.0% | |
| TGTAAGTAAATGCAGTTAGT+TGG | - | chr3_1:731487-731506 | None:intergenic | 30.0% | |
| AACTAACTGCATTTACTTAC+AGG | + | chr3_1:731486-731505 | Msa0342760:intron | 30.0% | |
| TGCAGTATCTAATACAAATC+TGG | - | chr3_1:731578-731597 | None:intergenic | 30.0% | |
| ! | GCGTTTTGTATAATATTCGT+TGG | + | chr3_1:731678-731697 | Msa0342760:three_prime_UTR | 30.0% |
| TAATATTCGTTGGTGTATCA+TGG | + | chr3_1:731688-731707 | Msa0342760:three_prime_UTR | 30.0% | |
| !! | ATAAAGGGGTATTAGGATAA+AGG | - | chr3_1:731724-731743 | None:intergenic | 30.0% |
| TGAGGGAAAACAAACGAAAA+AGG | + | chr3_1:726666-726685 | Msa0342760:CDS | 35.0% | |
| GAGGGAAAACAAACGAAAAA+GGG | + | chr3_1:726667-726686 | Msa0342760:CDS | 35.0% | |
| TCTACCAACTTATTAGTACG+GGG | - | chr3_1:726818-726837 | None:intergenic | 35.0% | |
| ATATCCACAAGATATCGGAA+CGG | - | chr3_1:726890-726909 | None:intergenic | 35.0% | |
| GTGGATATGAAGACCTATAT+AGG | + | chr3_1:726902-726921 | Msa0342760:CDS | 35.0% | |
| TGAAGGAATTATTGCATAGG+TGG | + | chr3_1:726942-726961 | Msa0342760:CDS | 35.0% | |
| GAAGGAATTATTGCATAGGT+GGG | + | chr3_1:726943-726962 | Msa0342760:CDS | 35.0% | |
| !! | TATTGTAGGAGAGTGTTTAC+CGG | + | chr3_1:727048-727067 | Msa0342760:CDS | 35.0% |
| TTTACCGGAAACTAGTGATA+GGG | + | chr3_1:727063-727082 | Msa0342760:CDS | 35.0% | |
| TAGTGTACATTCTAAGCTGA+AGG | + | chr3_1:727135-727154 | Msa0342760:CDS | 35.0% | |
| CGGAAAATATAACACACACA+AGG | - | chr3_1:727215-727234 | None:intergenic | 35.0% | |
| ACGCTCTTAGTACCTATAAT+TGG | + | chr3_1:727287-727306 | Msa0342760:CDS | 35.0% | |
| CGCTCTTAGTACCTATAATT+GGG | + | chr3_1:727288-727307 | Msa0342760:CDS | 35.0% | |
| GCTCTTAGTACCTATAATTG+GGG | + | chr3_1:727289-727308 | Msa0342760:CDS | 35.0% | |
| GTCATTTGATTAGATATGGG+CGG | + | chr3_1:727502-727521 | Msa0342760:intron | 35.0% | |
| ! | GTTTTCCACGCATTAACAAT+TGG | + | chr3_1:727561-727580 | Msa0342760:CDS | 35.0% |
| CATTAACAATTGGACCAAAG+TGG | + | chr3_1:727571-727590 | Msa0342760:CDS | 35.0% | |
| !! | TTTTCCATGTCTTGTTGTGT+TGG | - | chr3_1:727757-727776 | None:intergenic | 35.0% |
| ACCAACTTGAGAATGGTTAA+CGG | - | chr3_1:727797-727816 | None:intergenic | 35.0% | |
| !! | AACCATTCTCAAGTTGGTAT+TGG | + | chr3_1:727799-727818 | Msa0342760:CDS | 35.0% |
| CTTATATGGCTGAACATCAA+AGG | + | chr3_1:727854-727873 | Msa0342760:CDS | 35.0% | |
| GGAAAGCAAATCTTTGTGTT+CGG | - | chr3_1:727887-727906 | None:intergenic | 35.0% | |
| ! | AACACAAAGATTTGCTTTCC+CGG | + | chr3_1:727887-727906 | Msa0342760:CDS | 35.0% |
| ATATCCTCATATCATCCTCA+AGG | - | chr3_1:727921-727940 | None:intergenic | 35.0% | |
| AAGATTGATGCGGATAATGA+TGG | + | chr3_1:728036-728055 | Msa0342760:CDS | 35.0% | |
| AGATTGATGCGGATAATGAT+GGG | + | chr3_1:728037-728056 | Msa0342760:CDS | 35.0% | |
| !! | TAATGATGGGTTGAAAAGTG+AGG | + | chr3_1:728050-728069 | Msa0342760:CDS | 35.0% |
| GGAAAAGCAGAAGAAAATGA+TGG | + | chr3_1:728075-728094 | Msa0342760:CDS | 35.0% | |
| ! | AGAAAATGATGGGATGAAGT+TGG | + | chr3_1:728086-728105 | Msa0342760:CDS | 35.0% |
| AAGTTGGATGATGAAGATGT+TGG | + | chr3_1:728102-728121 | Msa0342760:CDS | 35.0% | |
| !! | AGAAAATGATGATGGGATGA+AGG | + | chr3_1:728149-728168 | Msa0342760:CDS | 35.0% |
| !! | AAGGTTGATGATGAAGATGT+GGG | + | chr3_1:728168-728187 | Msa0342760:CDS | 35.0% |
| AGAAGATAAAGACAATGGGA+TGG | + | chr3_1:728212-728231 | Msa0342760:CDS | 35.0% | |
| ! | TGATGATGATATGGCTGAAA+AGG | + | chr3_1:728242-728261 | Msa0342760:CDS | 35.0% |
| !!! | ACTACATTTTTTCATGTCGC+GGG | + | chr3_1:728374-728393 | Msa0342760:intron | 35.0% |
| ! | TGTTTGTTAACCATTGCCTT+AGG | + | chr3_1:728583-728602 | Msa0342760:intron | 35.0% |
| AGGTTATTAATATTGCTGGC+AGG | + | chr3_1:728603-728622 | Msa0342760:intron | 35.0% | |
| CATGATGAAGTTCGAAAACA+TGG | + | chr3_1:728635-728654 | Msa0342760:CDS | 35.0% | |
| TGTTAGGCATGGGATAATAA+AGG | - | chr3_1:728748-728767 | None:intergenic | 35.0% | |
| AGGTGTAGATGATTTCTGAT+TGG | + | chr3_1:728952-728971 | Msa0342760:intron | 35.0% | |
| ! | TTGTCTAGAATGTTGATGAG+TGG | + | chr3_1:728981-729000 | Msa0342760:intron | 35.0% |
| ! | TGTCTAGAATGTTGATGAGT+GGG | + | chr3_1:728982-729001 | Msa0342760:intron | 35.0% |
| CTCTACCTAAAATTCCCTTT+AGG | + | chr3_1:729199-729218 | Msa0342760:intron | 35.0% | |
| !!! | GCATTGTGGTTTTGTCTATA+TGG | + | chr3_1:729233-729252 | Msa0342760:intron | 35.0% |
| GGGTTTGTGTTGTATTAGTT+CGG | + | chr3_1:729254-729273 | Msa0342760:intron | 35.0% | |
| TTTGTGTTGTATTAGTTCGG+TGG | + | chr3_1:729257-729276 | Msa0342760:intron | 35.0% | |
| TTGTGTTGTATTAGTTCGGT+GGG | + | chr3_1:729258-729277 | Msa0342760:intron | 35.0% | |
| ! | GTTTTGTGTGGTTTTTTGTG+CGG | + | chr3_1:729287-729306 | Msa0342760:intron | 35.0% |
| ! | TTTTGTGTGGTTTTTTGTGC+GGG | + | chr3_1:729288-729307 | Msa0342760:intron | 35.0% |
| GCAAAATTAGGGGTTACAAT+AGG | - | chr3_1:729334-729353 | None:intergenic | 35.0% | |
| !!! | CGAATTTGTTTTATGCAACG+TGG | + | chr3_1:729429-729448 | Msa0342760:intron | 35.0% |
| ! | TTACAGAAAGTCCGTTTTGA+AGG | + | chr3_1:729693-729712 | Msa0342760:intron | 35.0% |
| !! | TACAGAAAGTCCGTTTTGAA+GGG | + | chr3_1:729694-729713 | Msa0342760:intron | 35.0% |
| TATGTTGGAATCTTCTTTGG+AGG | + | chr3_1:729758-729777 | Msa0342760:CDS | 35.0% | |
| ! | ATTTTGCAGTCATGATTGTG+GGG | + | chr3_1:729898-729917 | Msa0342760:intron | 35.0% |
| TTCTTAAGTACTTGGAGTTG+TGG | + | chr3_1:729927-729946 | Msa0342760:CDS | 35.0% | |
| TCTTAAGTACTTGGAGTTGT+GGG | + | chr3_1:729928-729947 | Msa0342760:CDS | 35.0% | |
| AGCATTACCAATGAATAGTC+GGG | - | chr3_1:729986-730005 | None:intergenic | 35.0% | |
| ATTGGATGTCTACTGCAATT+AGG | - | chr3_1:730156-730175 | None:intergenic | 35.0% | |
| TAGAATTGTTAAGACTCAGG+TGG | + | chr3_1:730197-730216 | Msa0342760:intron | 35.0% | |
| !! | TTGTTTGGGTTTTTAACTGG+AGG | + | chr3_1:730296-730315 | Msa0342760:intron | 35.0% |
| TATTCTAGTGAGTTATTCCC+GGG | - | chr3_1:730380-730399 | None:intergenic | 35.0% | |
| GGAAAATAAAAATGGTTCCC+AGG | + | chr3_1:730419-730438 | Msa0342760:intron | 35.0% | |
| AATTCCAACCTTAGATTCCT+GGG | - | chr3_1:730439-730458 | None:intergenic | 35.0% | |
| TAATTCCAACCTTAGATTCC+TGG | - | chr3_1:730440-730459 | None:intergenic | 35.0% | |
| ATATGCCATTGTTTGGTAGA+TGG | + | chr3_1:730461-730480 | Msa0342760:intron | 35.0% | |
| TATGCCATTGTTTGGTAGAT+GGG | + | chr3_1:730462-730481 | Msa0342760:intron | 35.0% | |
| CCTGGGTATAATTTATTCCA+AGG | - | chr3_1:730503-730522 | None:intergenic | 35.0% | |
| CCTTGGAATAAATTATACCC+AGG | + | chr3_1:730500-730519 | Msa0342760:intron | 35.0% | |
| GAATAAAAATGGGCAAAACG+TGG | - | chr3_1:730559-730578 | None:intergenic | 35.0% | |
| ACTTTCCAATCCTATTTGAC+AGG | - | chr3_1:730581-730600 | None:intergenic | 35.0% | |
| !!! | GATTGGAAAGTTTTATTCCC+AGG | + | chr3_1:730590-730609 | Msa0342760:intron | 35.0% |
| !! | AGGTGATAAGCATTGGTTAA+GGG | - | chr3_1:730642-730661 | None:intergenic | 35.0% |
| ATATAGGAGGTGATAAGCAT+TGG | - | chr3_1:730649-730668 | None:intergenic | 35.0% | |
| TCAATTGGGGAAAATTCCAA+TGG | - | chr3_1:730823-730842 | None:intergenic | 35.0% | |
| ! | GAATTTTCCCCAATTGAGTT+TGG | + | chr3_1:730826-730845 | Msa0342760:intron | 35.0% |
| TAGAAGTCCAAACTCAATTG+GGG | - | chr3_1:730836-730855 | None:intergenic | 35.0% | |
| CATAGAAGTCCAAACTCAAT+TGG | - | chr3_1:730838-730857 | None:intergenic | 35.0% | |
| !!! | GGACTTCTATGCATTGATTT+TGG | + | chr3_1:730847-730866 | Msa0342760:intron | 35.0% |
| !!! | ATGCATTGATTTTGGGATGA+TGG | + | chr3_1:730855-730874 | Msa0342760:intron | 35.0% |
| TTACACATCCCTTTCCATAT+TGG | - | chr3_1:730881-730900 | None:intergenic | 35.0% | |
| GTAATACAAGAAAGAGAACC+TGG | + | chr3_1:730897-730916 | Msa0342760:intron | 35.0% | |
| ACAGGATTTAGAAATGTCGA+TGG | + | chr3_1:730993-731012 | Msa0342760:intron | 35.0% | |
| !! | AAATGTCGATGGTATTGACA+GGG | + | chr3_1:731004-731023 | Msa0342760:intron | 35.0% |
| TGATGCCATAAAAAATTCCC+AGG | + | chr3_1:731048-731067 | Msa0342760:intron | 35.0% | |
| GAATAGGATTCCCAACATTT+AGG | - | chr3_1:731192-731211 | None:intergenic | 35.0% | |
| AATGTTGGGAATCCTATTCT+TGG | + | chr3_1:731193-731212 | Msa0342760:intron | 35.0% | |
| ATGTTGGGAATCCTATTCTT+GGG | + | chr3_1:731194-731213 | Msa0342760:intron | 35.0% | |
| GTTAACATGTGTAACATTCC+CGG | + | chr3_1:731245-731264 | Msa0342760:intron | 35.0% | |
| TTAACATGTGTAACATTCCC+GGG | + | chr3_1:731246-731265 | Msa0342760:intron | 35.0% | |
| ATATTTCATTCCGATCTCAC+GGG | + | chr3_1:731309-731328 | Msa0342760:intron | 35.0% | |
| ! | TTATTTTCAAACGAGGGTTG+GGG | - | chr3_1:731343-731362 | None:intergenic | 35.0% |
| TAACTGCATTTACTTACAGG+AGG | + | chr3_1:731489-731508 | Msa0342760:intron | 35.0% | |
| TTAACCGATCAATAAATCCG+CGG | - | chr3_1:731608-731627 | None:intergenic | 35.0% | |
| TTTGTCTAACTTGATTGTGC+TGG | + | chr3_1:731635-731654 | Msa0342760:three_prime_UTR | 35.0% | |
| CGAAAAAGGGATTGTGTTGT+TGG | + | chr3_1:726680-726699 | Msa0342760:CDS | 40.0% | |
| GGCATTTGAGTCTTTATCTG+TGG | - | chr3_1:726797-726816 | None:intergenic | 40.0% | |
| AATGCCCCGTACTAATAAGT+TGG | + | chr3_1:726811-726830 | Msa0342760:CDS | 40.0% | |
| TTTGCGCATCAGACAATGTT+CGG | - | chr3_1:726847-726866 | None:intergenic | 40.0% | |
| ! | AGTAGCTTGGGATTTAGAGT+AGG | + | chr3_1:726971-726990 | Msa0342760:CDS | 40.0% |
| !! | CTAGACCTTTGTTTGGCTTT+AGG | + | chr3_1:727019-727038 | Msa0342760:CDS | 40.0% |
| GCAAACCTAAAGCCAAACAA+AGG | - | chr3_1:727027-727046 | None:intergenic | 40.0% | |
| ! | GCTTTAGGTTTGCCTATTGT+AGG | + | chr3_1:727034-727053 | Msa0342760:CDS | 40.0% |
| GGTAAACACTCTCCTACAAT+AGG | - | chr3_1:727049-727068 | None:intergenic | 40.0% | |
| GTTTACCGGAAACTAGTGAT+AGG | + | chr3_1:727062-727081 | Msa0342760:CDS | 40.0% | |
| ! | CTAACCCTATCACTAGTTTC+CGG | - | chr3_1:727070-727089 | None:intergenic | 40.0% |
| AACAGCAACACCCCAATTAT+AGG | - | chr3_1:727302-727321 | None:intergenic | 40.0% | |
| GAACATTTATCCCTAACCAG+TGG | + | chr3_1:727527-727546 | Msa0342760:CDS | 40.0% | |
| ! | CTTAATTGGACCACTGGTTA+GGG | - | chr3_1:727540-727559 | None:intergenic | 40.0% |
| AAAACGCTTAATTGGACCAC+TGG | - | chr3_1:727546-727565 | None:intergenic | 40.0% | |
| ATGCGTGGAAAACGCTTAAT+TGG | - | chr3_1:727554-727573 | None:intergenic | 40.0% | |
| TTGGTCCAATTGTTAATGCG+TGG | - | chr3_1:727569-727588 | None:intergenic | 40.0% | |
| AACAATTGGACCAAAGTGGA+TGG | + | chr3_1:727575-727594 | Msa0342760:CDS | 40.0% | |
| ! | TGATTAGTTGGTTGAGGACT+TGG | + | chr3_1:727729-727748 | Msa0342760:intron | 40.0% |
| CTCCAATACCAACTTGAGAA+TGG | - | chr3_1:727804-727823 | None:intergenic | 40.0% | |
| TATGGCTGAACATCAAAGGT+TGG | + | chr3_1:727858-727877 | Msa0342760:CDS | 40.0% | |
| ! | ACACAAAGATTTGCTTTCCC+GGG | + | chr3_1:727888-727907 | Msa0342760:CDS | 40.0% |
| CAATCCTTGAGGATGATATG+AGG | + | chr3_1:727914-727933 | Msa0342760:CDS | 40.0% | |
| AAGCAAATAAGGTTGACGGT+AGG | + | chr3_1:727944-727963 | Msa0342760:CDS | 40.0% | |
| AGCAAATAAGGTTGACGGTA+GGG | + | chr3_1:727945-727964 | Msa0342760:CDS | 40.0% | |
| ! | TGATGAAGATGTTGGTGAAG+AGG | + | chr3_1:728110-728129 | Msa0342760:CDS | 40.0% |
| !! | GAAGGTTGATGATGAAGATG+TGG | + | chr3_1:728167-728186 | Msa0342760:CDS | 40.0% |
| TAAAGACAATGGGATGGAGT+TGG | + | chr3_1:728218-728237 | Msa0342760:CDS | 40.0% | |
| ! | GGAGTTGGATGATGATGATA+TGG | + | chr3_1:728233-728252 | Msa0342760:CDS | 40.0% |
| ! | GGAGTTTTTCCAATGCATGA+AGG | + | chr3_1:728487-728506 | Msa0342760:CDS | 40.0% |
| ! | GATTTAAAGGCACATCCTGA+AGG | + | chr3_1:728799-728818 | Msa0342760:CDS | 40.0% |
| TCAAGATGTATATGCCTCGT+TGG | + | chr3_1:728851-728870 | Msa0342760:CDS | 40.0% | |
| AAGAAAACAGGCAGTGATGA+AGG | - | chr3_1:729044-729063 | None:intergenic | 40.0% | |
| ! | CACTGCCTAAAGGGAATTTT+AGG | - | chr3_1:729207-729226 | None:intergenic | 40.0% |
| CTAAAATTCCCTTTAGGCAG+TGG | + | chr3_1:729205-729224 | Msa0342760:intron | 40.0% | |
| ! | TGTGTTGTATTAGTTCGGTG+GGG | + | chr3_1:729259-729278 | Msa0342760:intron | 40.0% |
| !!! | TTTGTGTGGTTTTTTGTGCG+GGG | + | chr3_1:729289-729308 | Msa0342760:intron | 40.0% |
| CATACATTGTCCTCTTCCTA+TGG | - | chr3_1:729532-729551 | None:intergenic | 40.0% | |
| ACAGTGAAAGAAATGCCTCA+AGG | + | chr3_1:729567-729586 | Msa0342760:CDS | 40.0% | |
| !!! | ACAGAAAGTCCGTTTTGAAG+GGG | + | chr3_1:729695-729714 | Msa0342760:intron | 40.0% |
| ATTCCACTACCCCTTCAAAA+CGG | - | chr3_1:729707-729726 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTGGAGGTTGTAG+TGG | + | chr3_1:729767-729786 | Msa0342760:CDS | 40.0% |
| GCTGTATATTTAGGGAATGC+GGG | - | chr3_1:730134-730153 | None:intergenic | 40.0% | |
| GGCTGTATATTTAGGGAATG+CGG | - | chr3_1:730135-730154 | None:intergenic | 40.0% | |
| TATATGGGTGCGTTTGTTTG+AGG | + | chr3_1:730398-730417 | Msa0342760:intron | 40.0% | |
| AAATGGTTCCCAGGAATCTA+AGG | + | chr3_1:730428-730447 | Msa0342760:intron | 40.0% | |
| TGTTCCCATCTACCAAACAA+TGG | - | chr3_1:730469-730488 | None:intergenic | 40.0% | |
| !! | GAGGTGATAAGCATTGGTTA+AGG | - | chr3_1:730643-730662 | None:intergenic | 40.0% |
| !!! | TTTTGGGATGATGGCCAATA+TGG | + | chr3_1:730864-730883 | Msa0342760:intron | 40.0% |
| ! | GATGATGGCCAATATGGAAA+GGG | + | chr3_1:730870-730889 | Msa0342760:intron | 40.0% |
| ! | AATCCTTCCTGAGTTCTAGT+CGG | - | chr3_1:730953-730972 | None:intergenic | 40.0% |
| CTCAGGAAGGATTAGAGTTT+AGG | + | chr3_1:730960-730979 | Msa0342760:intron | 40.0% | |
| AGTTTAGGCTCTTCATCAAC+AGG | + | chr3_1:730975-730994 | Msa0342760:intron | 40.0% | |
| !! | GAAATGTCGATGGTATTGAC+AGG | + | chr3_1:731003-731022 | Msa0342760:intron | 40.0% |
| !! | AATGTCGATGGTATTGACAG+GGG | + | chr3_1:731005-731024 | Msa0342760:intron | 40.0% |
| ! | TTTAGGGTGCGTTTGTTTGA+GGG | - | chr3_1:731175-731194 | None:intergenic | 40.0% |
| ! | ATTTAGGGTGCGTTTGTTTG+AGG | - | chr3_1:731176-731195 | None:intergenic | 40.0% |
| AACAAACGCACCCTAAATGT+TGG | + | chr3_1:731178-731197 | Msa0342760:intron | 40.0% | |
| ACAAACGCACCCTAAATGTT+GGG | + | chr3_1:731179-731198 | Msa0342760:intron | 40.0% | |
| GGAAAAAATTCCCGTGAGAT+CGG | - | chr3_1:731322-731341 | None:intergenic | 40.0% | |
| ACTTACAGGAGGATATCCTT+CGG | + | chr3_1:731500-731519 | Msa0342760:intron | 40.0% | |
| CAGTGAAATTGTTTGTCGTC+TGG | + | chr3_1:731528-731547 | Msa0342760:CDS | 40.0% | |
| ATACCCGCGGATTTATTGAT+CGG | + | chr3_1:731601-731620 | Msa0342760:CDS | 40.0% | |
| TAACCGATCAATAAATCCGC+GGG | - | chr3_1:731607-731626 | None:intergenic | 40.0% | |
| AACTCCGTTCCGATATCTTG+TGG | + | chr3_1:726883-726902 | Msa0342760:CDS | 45.0% | |
| ! | TGGGATTTAGAGTAGGCGTT+AGG | + | chr3_1:726978-726997 | Msa0342760:CDS | 45.0% |
| AAGCTGAAGGTCCTTCAAGA+AGG | + | chr3_1:727148-727167 | Msa0342760:CDS | 45.0% | |
| AGCTGAAGGTCCTTCAAGAA+GGG | + | chr3_1:727149-727168 | Msa0342760:CDS | 45.0% | |
| TCAATACCTGCAATACGGCT+GGG | - | chr3_1:727411-727430 | None:intergenic | 45.0% | |
| TTCAATACCTGCAATACGGC+TGG | - | chr3_1:727412-727431 | None:intergenic | 45.0% | |
| ! | GCTTAATTGGACCACTGGTT+AGG | - | chr3_1:727541-727560 | None:intergenic | 45.0% |
| AATTGGACCAAAGTGGATGG+AGG | + | chr3_1:727578-727597 | Msa0342760:CDS | 45.0% | |
| AACATGACCTCCATCCACTT+TGG | - | chr3_1:727588-727607 | None:intergenic | 45.0% | |
| GGTTCCAACACAACAAGACA+TGG | + | chr3_1:727750-727769 | Msa0342760:CDS | 45.0% | |
| GCCGTTAACCATTCTCAAGT+TGG | + | chr3_1:727793-727812 | Msa0342760:CDS | 45.0% | |
| ATCCTCAAGGATTGAAACCC+GGG | - | chr3_1:727908-727927 | None:intergenic | 45.0% | |
| CATCCTCAAGGATTGAAACC+CGG | - | chr3_1:727909-727928 | None:intergenic | 45.0% | |
| TATTCCGATGCCAAGTAGCA+TGG | + | chr3_1:727972-727991 | Msa0342760:CDS | 45.0% | |
| ! | ACTTCCATGCTACTTGGCAT+CGG | - | chr3_1:727979-727998 | None:intergenic | 45.0% |
| ATGCCAAGTAGCATGGAAGT+AGG | + | chr3_1:727979-727998 | Msa0342760:CDS | 45.0% | |
| CTTCCTACTTCCATGCTACT+TGG | - | chr3_1:727985-728004 | None:intergenic | 45.0% | |
| AGTAGCATGGAAGTAGGAAG+TGG | + | chr3_1:727985-728004 | Msa0342760:CDS | 45.0% | |
| GTAGCATGGAAGTAGGAAGT+GGG | + | chr3_1:727986-728005 | Msa0342760:CDS | 45.0% | |
| GGAAGTGGGTCAAAACATGT+AGG | + | chr3_1:728000-728019 | Msa0342760:CDS | 45.0% | |
| !! | TGATGGGTTGAAAAGTGAGG+CGG | + | chr3_1:728053-728072 | Msa0342760:CDS | 45.0% |
| CATGCATTGGAAAAACTCCC+CGG | - | chr3_1:728486-728505 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCATGAAGGCG+AGG | + | chr3_1:728492-728511 | Msa0342760:CDS | 45.0% |
| CATTGGAGTTTACGTCCTTC+AGG | - | chr3_1:728817-728836 | None:intergenic | 45.0% | |
| CTGAAGGACGTAAACTCCAA+TGG | + | chr3_1:728815-728834 | Msa0342760:CDS | 45.0% | |
| !! | GTAAACTCCAATGGACTGAG+CGG | + | chr3_1:728824-728843 | Msa0342760:CDS | 45.0% |
| TGAATTTCCGCTCAGTCCAT+TGG | - | chr3_1:728834-728853 | None:intergenic | 45.0% | |
| ! | TTCCCTTTAGGCAGTGGATT+TGG | + | chr3_1:729211-729230 | Msa0342760:intron | 45.0% |
| TGCCAAATCCACTGCCTAAA+GGG | - | chr3_1:729216-729235 | None:intergenic | 45.0% | |
| ATGCCAAATCCACTGCCTAA+AGG | - | chr3_1:729217-729236 | None:intergenic | 45.0% | |
| ! | GTGTTGTATTAGTTCGGTGG+GGG | + | chr3_1:729260-729279 | Msa0342760:intron | 45.0% |
| ! | TGTTGTATTAGTTCGGTGGG+GGG | + | chr3_1:729261-729280 | Msa0342760:intron | 45.0% |
| CATGTTACGTGTTGGACCAT+AGG | + | chr3_1:729513-729532 | Msa0342760:CDS | 45.0% | |
| GAAGAGGACAATGTATGTGC+TGG | + | chr3_1:729535-729554 | Msa0342760:CDS | 45.0% | |
| ATTATCCAAACGCTGCCTTG+AGG | - | chr3_1:729585-729604 | None:intergenic | 45.0% | |
| GCAGCGTTTGGATAATGCAA+TGG | + | chr3_1:729589-729608 | Msa0342760:CDS | 45.0% | |
| ! | TTCTTTGGAGGTTGTAGTGG+TGG | + | chr3_1:729770-729789 | Msa0342760:CDS | 45.0% |
| AAGTACTTGGAGTTGTGGGA+TGG | + | chr3_1:729932-729951 | Msa0342760:CDS | 45.0% | |
| TGTGGGATGGTGAAGCAAAA+TGG | + | chr3_1:729945-729964 | Msa0342760:CDS | 45.0% | |
| GTGGGATGGTGAAGCAAAAT+GGG | + | chr3_1:729946-729965 | Msa0342760:CDS | 45.0% | |
| TGGGATGGTGAAGCAAAATG+GGG | + | chr3_1:729947-729966 | Msa0342760:CDS | 45.0% | |
| GAGTATGCCCGACTATTCAT+TGG | + | chr3_1:729976-729995 | Msa0342760:CDS | 45.0% | |
| GTATATTTAGGGAATGCGGG+AGG | - | chr3_1:730131-730150 | None:intergenic | 45.0% | |
| !! | GCATTGGTTAAGGGCAGAAT+TGG | - | chr3_1:730633-730652 | None:intergenic | 45.0% |
| ! | GGATGATGGCCAATATGGAA+AGG | + | chr3_1:730869-730888 | Msa0342760:intron | 45.0% |
| ! | AGAACCTGGTTTGTCTAGCA+GGG | + | chr3_1:730911-730930 | Msa0342760:intron | 45.0% |
| TAATCCCTGCTAGACAAACC+AGG | - | chr3_1:730918-730937 | None:intergenic | 45.0% | |
| ACACTCCTACAACTAAGTCC+CGG | - | chr3_1:731267-731286 | None:intergenic | 45.0% | |
| CAATTTCACTGCGAATCCGA+AGG | - | chr3_1:731519-731538 | None:intergenic | 45.0% | |
| AGATACTGCAAAGATACCCG+CGG | + | chr3_1:731588-731607 | Msa0342760:CDS | 45.0% | |
| !!! | TAAATTTTATCATTAAAATT+AGG | + | chr3_1:729457-729476 | Msa0342760:intron | 5.0% |
| !! | AAATTTAAAAATTTCAAATT+AGG | - | chr3_1:729882-729901 | None:intergenic | 5.0% |
| TAGGTGGGATGCAAGTAGCT+TGG | + | chr3_1:726958-726977 | Msa0342760:CDS | 50.0% | |
| AGGTGGGATGCAAGTAGCTT+GGG | + | chr3_1:726959-726978 | Msa0342760:CDS | 50.0% | |
| TAGAGTAGGCGTTAGGACTG+TGG | + | chr3_1:726985-727004 | Msa0342760:CDS | 50.0% | |
| GCTGAAGGTCCTTCAAGAAG+GGG | + | chr3_1:727150-727169 | Msa0342760:CDS | 50.0% | |
| CTACGTTGTCCCCTTCTTGA+AGG | - | chr3_1:727162-727181 | None:intergenic | 50.0% | |
| TTCCCGGGTTTCAATCCTTG+AGG | + | chr3_1:727903-727922 | Msa0342760:CDS | 50.0% | |
| !! | GATGGGTTGAAAAGTGAGGC+GGG | + | chr3_1:728054-728073 | Msa0342760:CDS | 50.0% |
| GTAGATGAGTTGCGTGTTGC+CGG | + | chr3_1:728464-728483 | Msa0342760:CDS | 50.0% | |
| TAGATGAGTTGCGTGTTGCC+GGG | + | chr3_1:728465-728484 | Msa0342760:CDS | 50.0% | |
| ACTTCCTCGCCTTCATGCAT+TGG | - | chr3_1:728499-728518 | None:intergenic | 50.0% | |
| AATGCATGAAGGCGAGGAAG+TGG | + | chr3_1:728498-728517 | Msa0342760:CDS | 50.0% | |
| ATGCATGAAGGCGAGGAAGT+GGG | + | chr3_1:728499-728518 | Msa0342760:CDS | 50.0% | |
| TCAAGTGTCTTGGTCCAACG+AGG | - | chr3_1:728868-728887 | None:intergenic | 50.0% | |
| TCGTTGGACCAAGACACTTG+AGG | + | chr3_1:728867-728886 | Msa0342760:CDS | 50.0% | |
| ! | AGGCAGTGGATTTGGCATTG+TGG | + | chr3_1:729219-729238 | Msa0342760:intron | 50.0% |
| GCGGGGTTTACGCTTATGTT+TGG | + | chr3_1:729306-729325 | Msa0342760:intron | 50.0% | |
| TATTAGGCAGAGTCGTCGCA+AGG | - | chr3_1:729371-729390 | None:intergenic | 50.0% | |
| TGTCCAGTGGTCTTCGAACT+GGG | - | chr3_1:729495-729514 | None:intergenic | 50.0% | |
| ATGTCCAGTGGTCTTCGAAC+TGG | - | chr3_1:729496-729515 | None:intergenic | 50.0% | |
| CCAACACGTAACATGTCCAG+TGG | - | chr3_1:729508-729527 | None:intergenic | 50.0% | |
| CCACTGGACATGTTACGTGT+TGG | + | chr3_1:729505-729524 | Msa0342760:CDS | 50.0% | |
| ACGTGTTGGACCATAGGAAG+AGG | + | chr3_1:729519-729538 | Msa0342760:CDS | 50.0% | |
| AAATGCCTCAAGGCAGCGTT+TGG | + | chr3_1:729577-729596 | Msa0342760:CDS | 50.0% | |
| !!! | AGTCCGTTTTGAAGGGGTAG+TGG | + | chr3_1:729701-729720 | Msa0342760:CDS | 50.0% |
| GGGATGGTGAAGCAAAATGG+GGG | + | chr3_1:729948-729967 | Msa0342760:CDS | 50.0% | |
| !! | GGAGGAGTGTGCCGTATTTT+TGG | + | chr3_1:730314-730333 | Msa0342760:intron | 50.0% |
| ! | GGTTCCCAGGAATCTAAGGT+TGG | + | chr3_1:730432-730451 | Msa0342760:intron | 50.0% |
| GCAAAACGTGGGTCAAACGT+CGG | - | chr3_1:730547-730566 | None:intergenic | 50.0% | |
| ! | GAGAACCTGGTTTGTCTAGC+AGG | + | chr3_1:730910-730929 | Msa0342760:intron | 50.0% |
| ! | ATCCACACCGACTAGAACTC+AGG | + | chr3_1:730943-730962 | Msa0342760:intron | 50.0% |
| ! | TTCCTGAGTTCTAGTCGGTG+TGG | - | chr3_1:730948-730967 | None:intergenic | 50.0% |
| ! | ACACCGACTAGAACTCAGGA+AGG | + | chr3_1:730947-730966 | Msa0342760:intron | 50.0% |
| TTCCTGGGAAAGCTAATCCC+AGG | + | chr3_1:731135-731154 | Msa0342760:intron | 50.0% | |
| !! | TACCTGGGATTAGCTTTCCC+AGG | - | chr3_1:731140-731159 | None:intergenic | 50.0% |
| CATTCCCGGGACTTAGTTGT+AGG | + | chr3_1:731259-731278 | Msa0342760:intron | 50.0% | |
| CACTCCTACAACTAAGTCCC+GGG | - | chr3_1:731266-731285 | None:intergenic | 50.0% | |
| GGGACTTAGTTGTAGGAGTG+TGG | + | chr3_1:731266-731285 | Msa0342760:intron | 50.0% | |
| AGATGAGTTGCGTGTTGCCG+GGG | + | chr3_1:728466-728485 | Msa0342760:CDS | 55.0% | |
| !! | CCAAGACACTTGAGGCGTTG+CGG | + | chr3_1:728875-728894 | Msa0342760:CDS | 55.0% |
| ! | GTATTAGTTCGGTGGGGGGT+TGG | + | chr3_1:729265-729284 | Msa0342760:intron | 55.0% |
| CAGTGGTCTTCGAACTGGGT+TGG | - | chr3_1:729491-729510 | None:intergenic | 55.0% | |
| CAACCCAGTTCGAAGACCAC+TGG | + | chr3_1:729489-729508 | Msa0342760:CDS | 55.0% | |
| TGGTTGCCCAGCCGTATTGC+AGG | + | chr3_1:727402-727421 | Msa0342760:CDS | 60.0% | |
| CCGCAACGCCTCAAGTGTCT+TGG | - | chr3_1:728878-728897 | None:intergenic | 60.0% | |
| !!! | GGTGGGGGGTTGGTTTTGTG+TGG | + | chr3_1:729275-729294 | Msa0342760:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 726665 | 731868 | 726665 | ID=Msa0342760;Name=Msa0342760 |
| chr3_1 | mRNA | 726665 | 731868 | 726665 | ID=Msa0342760-mRNA-1;Parent=Msa0342760;Name=Msa0342760-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.8|0.63|1|1|1|11|241|718 |
| chr3_1 | exon | 726665 | 726703 | 726665 | ID=Msa0342760-mRNA-1:exon:108;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 726794 | 727423 | 726794 | ID=Msa0342760-mRNA-1:exon:109;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 727515 | 727637 | 727515 | ID=Msa0342760-mRNA-1:exon:110;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 727736 | 728343 | 727736 | ID=Msa0342760-mRNA-1:exon:111;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 728451 | 728532 | 728451 | ID=Msa0342760-mRNA-1:exon:112;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 728605 | 728694 | 728605 | ID=Msa0342760-mRNA-1:exon:113;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 728784 | 728909 | 728784 | ID=Msa0342760-mRNA-1:exon:114;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 729479 | 729610 | 729479 | ID=Msa0342760-mRNA-1:exon:115;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 729699 | 729814 | 729699 | ID=Msa0342760-mRNA-1:exon:116;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 729907 | 729997 | 729907 | ID=Msa0342760-mRNA-1:exon:117;Parent=Msa0342760-mRNA-1 |
| chr3_1 | exon | 731508 | 731868 | 731508 | ID=Msa0342760-mRNA-1:exon:118;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 726665 | 726703 | 726665 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 726794 | 727423 | 726794 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 727515 | 727637 | 727515 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 727736 | 728343 | 727736 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 728451 | 728532 | 728451 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 728605 | 728694 | 728605 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 728784 | 728909 | 728784 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 729479 | 729610 | 729479 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 729699 | 729814 | 729699 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 729907 | 729997 | 729907 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | CDS | 731508 | 731627 | 731508 | ID=Msa0342760-mRNA-1:cds;Parent=Msa0342760-mRNA-1 |
| chr3_1 | three_prime_UTR | 731628 | 731868 | 731628 | ID=Msa0342760-mRNA-1:three_prime_utr;Parent=Msa0342760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
