Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900920 | XP_039685079.1 | 78.241 | 648 | 107 | 1 | 1 | 648 | 1 | 614 | 0.0 | 1020 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900920 | A0A072TKR8 | 63.500 | 400 | 44 | 4 | 1 | 399 | 1 | 299 | 2.24e-158 | 467 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027680 | Msa0900920 | 0.802105 | 6.569244e-49 | -8.615850e-47 |
| Msa0210730 | Msa0900920 | 0.905251 | 5.231423e-80 | -8.615850e-47 |
| Msa0317780 | Msa0900920 | 0.957919 | 8.439319e-116 | -8.615850e-47 |
| Msa0342760 | Msa0900920 | 0.982266 | 1.189665e-154 | -8.615850e-47 |
| Msa0352050 | Msa0900920 | 0.897445 | 1.396569e-76 | -8.615850e-47 |
| Msa0878530 | Msa0900920 | 0.835671 | 1.465337e-56 | -8.615850e-47 |
| Msa0900920 | Msa0952380 | 0.906786 | 1.022229e-80 | -8.615850e-47 |
| Msa0900920 | Msa0954640 | 0.911951 | 3.398030e-83 | -8.615850e-47 |
| Msa0900920 | Msa1025910 | 0.904080 | 1.782064e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0900920 | MtrunA17_Chr6g0474521 | 69.782 | 321 | 56 | 1 | 42 | 362 | 1 | 280 | 9.72e-154 | 445 |
| Msa0900920 | MtrunA17_Chr1g0162981 | 62.838 | 148 | 51 | 1 | 256 | 399 | 1 | 148 | 4.71e-55 | 185 |
| Msa0900920 | MtrunA17_Chr4g0074621 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 6.71e-54 | 179 |
| Msa0900920 | MtrunA17_Chr1g0175971 | 94.505 | 91 | 5 | 0 | 1 | 91 | 1 | 91 | 6.71e-54 | 179 |
| Msa0900920 | MtrunA17_Chr8g0337461 | 86.765 | 68 | 9 | 0 | 1 | 68 | 1 | 68 | 1.98e-33 | 122 |
| Msa0900920 | MtrunA17_Chr7g0265121 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 6.25e-33 | 125 |
| Msa0900920 | MtrunA17_Chr4g0074611 | 34.426 | 183 | 113 | 2 | 22 | 198 | 9 | 190 | 6.25e-33 | 125 |
| Msa0900920 | MtrunA17_Chr4g0012881 | 26.339 | 224 | 147 | 7 | 31 | 246 | 38 | 251 | 4.03e-21 | 97.8 |
| Msa0900920 | MtrunA17_Chr6g0470871 | 53.448 | 58 | 27 | 0 | 23 | 80 | 16 | 73 | 7.04e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 154 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCTCTTAGTACCTATAAT+TGG | 0.159588 | 6_1:+97168731 | Msa0900920:CDS |
| GATACAGTTATACACATTTC+TGG | 0.200591 | 6_1:+97168826 | Msa0900920:CDS |
| CTAGACCTTTGTTTGGCTTT+AGG | 0.220943 | 6_1:+97168463 | Msa0900920:CDS |
| ATGCGTGGAAAACGCTTAAT+TGG | 0.267383 | 6_1:-97168995 | None:intergenic |
| TGAGGTAGTTGATGATTTAA+AGG | 0.268632 | 6_1:+97170230 | Msa0900920:CDS |
| AGATATGTTGGAATCTTCTT+TGG | 0.268674 | 6_1:+97171199 | Msa0900920:CDS |
| TGAGGGAAAACAAACGAAAA+AGG | 0.283246 | 6_1:+97168110 | Msa0900920:CDS |
| ACAAAGGTCTAGATGTTTAA+AGG | 0.286497 | 6_1:-97168452 | None:intergenic |
| TTAATATAACTGTGTGATTT+CGG | 0.290724 | 6_1:-97168676 | None:intergenic |
| GAGGATATTAAAAGCAAATA+AGG | 0.296971 | 6_1:+97169377 | Msa0900920:CDS |
| CGCTCTTAGTACCTATAATT+GGG | 0.312086 | 6_1:+97168732 | Msa0900920:CDS |
| ATTTACCAAAGCAACAAAAT+TGG | 0.312599 | 6_1:+97171237 | Msa0900920:CDS |
| GCTTTAGGTTTGCCTATTGT+AGG | 0.336005 | 6_1:+97168478 | Msa0900920:CDS |
| GCTTAATTGGACCACTGGTT+AGG | 0.336914 | 6_1:-97168982 | None:intergenic |
| CATTGGAGTTTACGTCCTTC+AGG | 0.346042 | 6_1:-97170258 | None:intergenic |
| CCTTAGGTTATTAATATTGC+TGG | 0.350091 | 6_1:+97170043 | Msa0900920:intron |
| AACACAAAGATTTGCTTTCC+CGG | 0.362338 | 6_1:+97169331 | Msa0900920:CDS |
| AACAGCAACACCCCAATTAT+AGG | 0.367016 | 6_1:-97168743 | None:intergenic |
| ATGTCCAGTGGTCTTCGAAC+TGG | 0.369613 | 6_1:-97170937 | None:intergenic |
| AACCATTCTCAAGTTGGTAT+TGG | 0.370824 | 6_1:+97169243 | Msa0900920:CDS |
| AATAAAGGAGCGAACAATAA+AGG | 0.374187 | 6_1:+97171176 | Msa0900920:CDS |
| GTAGATGAGTTGCGTGTTGC+CGG | 0.380253 | 6_1:+97169908 | Msa0900920:CDS |
| TGGTTGCCCAGCCGTATTGC+AGG | 0.381669 | 6_1:+97168846 | Msa0900920:CDS |
| GTTTACCGGAAACTAGTGAT+AGG | 0.386283 | 6_1:+97168506 | Msa0900920:CDS |
| CTACGTTGTCCCCTTCTTGA+AGG | 0.389579 | 6_1:-97168603 | None:intergenic |
| CTTCCTACTTCCATGCTACT+TGG | 0.397148 | 6_1:-97169426 | None:intergenic |
| TGATTAGTTGGTTGAGGACT+TGG | 0.400972 | 6_1:+97169173 | Msa0900920:intron |
| GTGGATATGAAGACCTATAT+AGG | 0.406234 | 6_1:+97168346 | Msa0900920:CDS |
| AAATGCCTCAAGGCAGCGTT+TGG | 0.407622 | 6_1:+97171021 | Msa0900920:CDS |
| GTAGTGGAATTGATGAATAA+AGG | 0.409455 | 6_1:+97171161 | Msa0900920:CDS |
| CTAACCCTATCACTAGTTTC+CGG | 0.415358 | 6_1:-97168511 | None:intergenic |
| AGTACCATTCATTCCTATAT+AGG | 0.420459 | 6_1:-97168359 | None:intergenic |
| TAAACATCTAGACCTTTGTT+TGG | 0.421249 | 6_1:+97168456 | Msa0900920:CDS |
| ACTTCCTCGCCTTCATGCAT+TGG | 0.432506 | 6_1:-97169940 | None:intergenic |
| GGAGTTGGATGATGATGATA+TGG | 0.432653 | 6_1:+97169677 | Msa0900920:CDS |
| TGATGATGATATGGCTGAAA+AGG | 0.433309 | 6_1:+97169686 | Msa0900920:CDS |
| TTTATTCTGCACACATGAAA+AGG | 0.433361 | 6_1:+97169755 | Msa0900920:CDS |
| CTTAATTGGACCACTGGTTA+GGG | 0.433873 | 6_1:-97168981 | None:intergenic |
| AATGAATGGTACTTTATTGA+AGG | 0.438781 | 6_1:+97168369 | Msa0900920:CDS |
| TATGTTGGAATCTTCTTTGG+AGG | 0.445095 | 6_1:+97171202 | Msa0900920:CDS |
| TTCAATACCTGCAATACGGC+TGG | 0.445664 | 6_1:-97168853 | None:intergenic |
| TCTTCATATCCACAAGATAT+CGG | 0.446334 | 6_1:-97168336 | None:intergenic |
| AGCAAATAAGGTTGACGGTA+GGG | 0.449525 | 6_1:+97169389 | Msa0900920:CDS |
| TTGGAAGAAGAAAATGATGA+TGG | 0.450909 | 6_1:+97169585 | Msa0900920:CDS |
| TTCTTTGGAGGTTGTAGTGG+TGG | 0.452564 | 6_1:+97171214 | Msa0900920:CDS |
| TTTGCGCATCAGACAATGTT+CGG | 0.454164 | 6_1:-97168288 | None:intergenic |
| GGTAAACACTCTCCTACAAT+AGG | 0.455224 | 6_1:-97168490 | None:intergenic |
| TGAATTTCCGCTCAGTCCAT+TGG | 0.455335 | 6_1:-97170275 | None:intergenic |
| AAGATTGATGCGGATAATGA+TGG | 0.460099 | 6_1:+97169480 | Msa0900920:CDS |
| TAGATGAGTTGCGTGTTGCC+GGG | 0.464352 | 6_1:+97169909 | Msa0900920:CDS |
| TTAATGTGATTAGTTGGTTG+AGG | 0.466558 | 6_1:+97169167 | Msa0900920:intron |
| TATCTACCAACTTATTAGTA+CGG | 0.467587 | 6_1:-97168261 | None:intergenic |
| ATCTACCAACTTATTAGTAC+GGG | 0.467987 | 6_1:-97168260 | None:intergenic |
| AGGTGGGATGCAAGTAGCTT+GGG | 0.470670 | 6_1:+97168403 | Msa0900920:CDS |
| TGGGATTTAGAGTAGGCGTT+AGG | 0.472541 | 6_1:+97168422 | Msa0900920:CDS |
| GGAAAGCAAATCTTTGTGTT+CGG | 0.477390 | 6_1:-97169328 | None:intergenic |
| CATGTTACGTGTTGGACCAT+AGG | 0.488808 | 6_1:+97170957 | Msa0900920:CDS |
| AATATTCAATACCTGCAATA+CGG | 0.491166 | 6_1:-97168857 | None:intergenic |
| TATTGTAGGAGAGTGTTTAC+CGG | 0.495009 | 6_1:+97168492 | Msa0900920:CDS |
| AGAAAATGATGGGATGAAGT+TGG | 0.497063 | 6_1:+97169530 | Msa0900920:CDS |
| TGAAGGAATTATTGCATAGG+TGG | 0.500937 | 6_1:+97168386 | Msa0900920:CDS |
| ACCAACTTGAGAATGGTTAA+CGG | 0.500987 | 6_1:-97169238 | None:intergenic |
| AACATGACCTCCATCCACTT+TGG | 0.501951 | 6_1:-97169029 | None:intergenic |
| AAGCTGAAGGTCCTTCAAGA+AGG | 0.502318 | 6_1:+97168592 | Msa0900920:CDS |
| ATCCTCAAGGATTGAAACCC+GGG | 0.502408 | 6_1:-97169349 | None:intergenic |
| TAAAGACAATGGGATGGAGT+TGG | 0.505100 | 6_1:+97169662 | Msa0900920:CDS |
| CTCCAATACCAACTTGAGAA+TGG | 0.505693 | 6_1:-97169245 | None:intergenic |
| CATACATTGTCCTCTTCCTA+TGG | 0.507544 | 6_1:-97170973 | None:intergenic |
| ATGGAAGAAGATAAAGACAA+TGG | 0.509362 | 6_1:+97169651 | Msa0900920:CDS |
| TAGGTGGGATGCAAGTAGCT+TGG | 0.510938 | 6_1:+97168402 | Msa0900920:CDS |
| AAGACCTATATAGGAATGAA+TGG | 0.515117 | 6_1:+97168355 | Msa0900920:CDS |
| ATCTTCTTTGGAGGTTGTAG+TGG | 0.519883 | 6_1:+97171211 | Msa0900920:CDS |
| TGGAAGAAGATAAAGACAAT+GGG | 0.520727 | 6_1:+97169652 | Msa0900920:CDS |
| GCCGTTAACCATTCTCAAGT+TGG | 0.520859 | 6_1:+97169237 | Msa0900920:CDS |
| GAAGAGGACAATGTATGTGC+TGG | 0.521423 | 6_1:+97170979 | Msa0900920:CDS |
| AGGTTATTAATATTGCTGGC+AGG | 0.523648 | 6_1:+97170047 | Msa0900920:intron |
| TTAAAAGCAAATAAGGTTGA+CGG | 0.525394 | 6_1:+97169384 | Msa0900920:CDS |
| AACTCCGTTCCGATATCTTG+TGG | 0.528157 | 6_1:+97168327 | Msa0900920:CDS |
| GGAAAAGCAGAAGAAAATGA+TGG | 0.528960 | 6_1:+97169519 | Msa0900920:CDS |
| AATGCCCCGTACTAATAAGT+TGG | 0.529713 | 6_1:+97168255 | Msa0900920:CDS |
| GATGGGTTGAAAAGTGAGGC+GGG | 0.530008 | 6_1:+97169498 | Msa0900920:CDS |
| CCGCAACGCCTCAAGTGTCT+TGG | 0.532629 | 6_1:-97170319 | None:intergenic |
| AATGCATGAAGGCGAGGAAG+TGG | 0.532769 | 6_1:+97169942 | Msa0900920:CDS |
| AAAACGCTTAATTGGACCAC+TGG | 0.534869 | 6_1:-97168987 | None:intergenic |
| AGCTGAAGGTCCTTCAAGAA+GGG | 0.538805 | 6_1:+97168593 | Msa0900920:CDS |
| ACACAAAGATTTGCTTTCCC+GGG | 0.543023 | 6_1:+97169332 | Msa0900920:CDS |
| GAACAATAAAGGAGATATGT+TGG | 0.549679 | 6_1:+97171187 | Msa0900920:CDS |
| CAATCCTTGAGGATGATATG+AGG | 0.550170 | 6_1:+97169358 | Msa0900920:CDS |
| CTTATATGGCTGAACATCAA+AGG | 0.550916 | 6_1:+97169298 | Msa0900920:CDS |
| TGTCCAGTGGTCTTCGAACT+GGG | 0.551007 | 6_1:-97170936 | None:intergenic |
| GGCATTTGAGTCTTTATCTG+TGG | 0.552622 | 6_1:-97168238 | None:intergenic |
| AGTAGCATGGAAGTAGGAAG+TGG | 0.553313 | 6_1:+97169429 | Msa0900920:CDS |
| TTTACCGGAAACTAGTGATA+GGG | 0.559975 | 6_1:+97168507 | Msa0900920:CDS |
| GAAGGAATTATTGCATAGGT+GGG | 0.560436 | 6_1:+97168387 | Msa0900920:CDS |
| TATTCCGATGCCAAGTAGCA+TGG | 0.561626 | 6_1:+97169416 | Msa0900920:CDS |
| TTCCCGGGTTTCAATCCTTG+AGG | 0.561883 | 6_1:+97169347 | Msa0900920:CDS |
| CATCCTCAAGGATTGAAACC+CGG | 0.563868 | 6_1:-97169350 | None:intergenic |
| TCAAGATGTATATGCCTCGT+TGG | 0.564996 | 6_1:+97170295 | Msa0900920:CDS |
| AAGCAAATAAGGTTGACGGT+AGG | 0.567979 | 6_1:+97169388 | Msa0900920:CDS |
| AGAAAATGATGATGGGATGA+AGG | 0.570797 | 6_1:+97169593 | Msa0900920:CDS |
| ATTCCACTACCCCTTCAAAA+CGG | 0.572945 | 6_1:-97171148 | None:intergenic |
| CAACCCAGTTCGAAGACCAC+TGG | 0.574509 | 6_1:+97170933 | Msa0900920:CDS |
| CATGATGAAGTTCGAAAACA+TGG | 0.575114 | 6_1:+97170079 | Msa0900920:CDS |
| ATATCCTCATATCATCCTCA+AGG | 0.575345 | 6_1:-97169362 | None:intergenic |
| TATGGCTGAACATCAAAGGT+TGG | 0.580692 | 6_1:+97169302 | Msa0900920:CDS |
| AGATGAGTTGCGTGTTGCCG+GGG | 0.584197 | 6_1:+97169910 | Msa0900920:CDS |
| AGTAGCTTGGGATTTAGAGT+AGG | 0.584499 | 6_1:+97168415 | Msa0900920:CDS |
| TTGGTCCAATTGTTAATGCG+TGG | 0.585880 | 6_1:-97169010 | None:intergenic |
| ACTTCCATGCTACTTGGCAT+CGG | 0.586687 | 6_1:-97169420 | None:intergenic |
| AGAAGATAAAGACAATGGGA+TGG | 0.587623 | 6_1:+97169656 | Msa0900920:CDS |
| TATTGAAGGAATTATTGCAT+AGG | 0.587809 | 6_1:+97168383 | Msa0900920:CDS |
| CTGAAGGACGTAAACTCCAA+TGG | 0.587862 | 6_1:+97170259 | Msa0900920:CDS |
| AATTGAAAATCTTAGTAGTG+CGG | 0.588744 | 6_1:+97168777 | Msa0900920:CDS |
| GAAGGTTGATGATGAAGATG+TGG | 0.591676 | 6_1:+97169611 | Msa0900920:CDS |
| TAGTGTACATTCTAAGCTGA+AGG | 0.592478 | 6_1:+97168579 | Msa0900920:CDS |
| AACAATTGGACCAAAGTGGA+TGG | 0.592872 | 6_1:+97169019 | Msa0900920:CDS |
| GAAAAGCAGAAGAAAATGAT+GGG | 0.594943 | 6_1:+97169520 | Msa0900920:CDS |
| CAGTGGTCTTCGAACTGGGT+TGG | 0.595890 | 6_1:-97170932 | None:intergenic |
| ATGCATGAAGGCGAGGAAGT+GGG | 0.596800 | 6_1:+97169943 | Msa0900920:CDS |
| GATTTAAAGGCACATCCTGA+AGG | 0.597377 | 6_1:+97170243 | Msa0900920:CDS |
| CATTAACAATTGGACCAAAG+TGG | 0.599981 | 6_1:+97169015 | Msa0900920:CDS |
| TCAATACCTGCAATACGGCT+GGG | 0.600754 | 6_1:-97168852 | None:intergenic |
| TGATGAAGATGTTGGTGAAG+AGG | 0.600999 | 6_1:+97169554 | Msa0900920:CDS |
| CCACTGGACATGTTACGTGT+TGG | 0.601741 | 6_1:+97170949 | Msa0900920:CDS |
| ACGTGTTGGACCATAGGAAG+AGG | 0.602868 | 6_1:+97170963 | Msa0900920:CDS |
| TAGAGTAGGCGTTAGGACTG+TGG | 0.605350 | 6_1:+97168429 | Msa0900920:CDS |
| ATGCCAAGTAGCATGGAAGT+AGG | 0.607349 | 6_1:+97169423 | Msa0900920:CDS |
| GGAAGTGGGTCAAAACATGT+AGG | 0.610645 | 6_1:+97169444 | Msa0900920:CDS |
| TGGAAGAAGAAAATGATGAT+GGG | 0.616216 | 6_1:+97169586 | Msa0900920:CDS |
| CCAAGACACTTGAGGCGTTG+CGG | 0.618422 | 6_1:+97170319 | Msa0900920:CDS |
| GGTTCCAACACAACAAGACA+TGG | 0.619501 | 6_1:+97169194 | Msa0900920:CDS |
| TGATGGGTTGAAAAGTGAGG+CGG | 0.624829 | 6_1:+97169497 | Msa0900920:CDS |
| GCAGCGTTTGGATAATGCAA+TGG | 0.628794 | 6_1:+97171033 | Msa0900920:CDS |
| GTCATTTGATTAGATATGGG+CGG | 0.632926 | 6_1:+97168946 | Msa0900920:intron |
| GCTGAAGGTCCTTCAAGAAG+GGG | 0.635073 | 6_1:+97168594 | Msa0900920:CDS |
| AAGGTTGATGATGAAGATGT+GGG | 0.641554 | 6_1:+97169612 | Msa0900920:CDS |
| AAGTTGGATGATGAAGATGT+TGG | 0.645218 | 6_1:+97169546 | Msa0900920:CDS |
| ATTATCCAAACGCTGCCTTG+AGG | 0.647660 | 6_1:-97171026 | None:intergenic |
| CGGAAAATATAACACACACA+AGG | 0.655010 | 6_1:-97168656 | None:intergenic |
| ACAGTGAAAGAAATGCCTCA+AGG | 0.655287 | 6_1:+97171011 | Msa0900920:CDS |
| AGATTGATGCGGATAATGAT+GGG | 0.662184 | 6_1:+97169481 | Msa0900920:CDS |
| TAATGATGGGTTGAAAAGTG+AGG | 0.663934 | 6_1:+97169494 | Msa0900920:CDS |
| AATTGGACCAAAGTGGATGG+AGG | 0.668982 | 6_1:+97169022 | Msa0900920:CDS |
| GCAAACCTAAAGCCAAACAA+AGG | 0.673782 | 6_1:-97168468 | None:intergenic |
| GTAGCATGGAAGTAGGAAGT+GGG | 0.674257 | 6_1:+97169430 | Msa0900920:CDS |
| TCGTTGGACCAAGACACTTG+AGG | 0.677045 | 6_1:+97170311 | Msa0900920:CDS |
| GAACATTTATCCCTAACCAG+TGG | 0.678694 | 6_1:+97168971 | Msa0900920:CDS |
| GCTCTTAGTACCTATAATTG+GGG | 0.679670 | 6_1:+97168733 | Msa0900920:CDS |
| ATATCCACAAGATATCGGAA+CGG | 0.702922 | 6_1:-97168331 | None:intergenic |
| CCAACACGTAACATGTCCAG+TGG | 0.705795 | 6_1:-97170949 | None:intergenic |
| GTAAACTCCAATGGACTGAG+CGG | 0.711805 | 6_1:+97170268 | Msa0900920:CDS |
| TCAAGTGTCTTGGTCCAACG+AGG | 0.711931 | 6_1:-97170309 | None:intergenic |
| AAAGTGTAGTAAGATTGATG+CGG | 0.726301 | 6_1:+97169470 | Msa0900920:CDS |
| TCTACCAACTTATTAGTACG+GGG | 0.745691 | 6_1:-97168259 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTAAATTAAAACAAAAA+AGG | - | chr6_1:97169998-97170017 | None:intergenic | 10.0% |
| !! | ATTAAAACAAAAAAGGTTAA+CGG | - | chr6_1:97169991-97170010 | None:intergenic | 15.0% |
| !!! | AATTTTGTCAGATTATTTTT+CGG | + | chr6_1:97170117-97170136 | Msa0900920:CDS | 15.0% |
| !!! | AACTCTTAAATAAATTGTTT+TGG | + | chr6_1:97171063-97171082 | Msa0900920:intron | 15.0% |
| !! | TTAATATAACTGTGTGATTT+CGG | - | chr6_1:97168679-97168698 | None:intergenic | 20.0% |
| !!! | ATTTGTCATTTGATTAGATA+TGG | + | chr6_1:97168942-97168961 | Msa0900920:intron | 20.0% |
| !!! | TTTGTCATTTGATTAGATAT+GGG | + | chr6_1:97168943-97168962 | Msa0900920:intron | 20.0% |
| !! | TTATAATTAATGTTAGGCAT+GGG | - | chr6_1:97170202-97170221 | None:intergenic | 20.0% |
| !! | ATTATAATTAATGTTAGGCA+TGG | - | chr6_1:97170203-97170222 | None:intergenic | 20.0% |
| !! | CTGCAATTATAATTAATGTT+AGG | - | chr6_1:97170208-97170227 | None:intergenic | 20.0% |
| !! | TTAATTATAATTGCAGTTTG+AGG | + | chr6_1:97170212-97170231 | Msa0900920:intron | 20.0% |
| !! | TCATTGACATCAAATTTATT+AGG | - | chr6_1:97170831-97170850 | None:intergenic | 20.0% |
| ! | TATCTACCAACTTATTAGTA+CGG | - | chr6_1:97168264-97168283 | None:intergenic | 25.0% |
| ! | AATGAATGGTACTTTATTGA+AGG | + | chr6_1:97168369-97168388 | Msa0900920:CDS | 25.0% |
| ! | TATTGAAGGAATTATTGCAT+AGG | + | chr6_1:97168383-97168402 | Msa0900920:CDS | 25.0% |
| ! | AATTGAAAATCTTAGTAGTG+CGG | + | chr6_1:97168777-97168796 | Msa0900920:CDS | 25.0% |
| ! | AATATTCAATACCTGCAATA+CGG | - | chr6_1:97168860-97168879 | None:intergenic | 25.0% |
| !!! | TGCAGGTATTGAATATTAAA+TGG | + | chr6_1:97168863-97168882 | Msa0900920:intron | 25.0% |
| !!! | GCAGGTATTGAATATTAAAT+GGG | + | chr6_1:97168864-97168883 | Msa0900920:intron | 25.0% |
| ! | TTGCCTTTAGTATATTAACT+CGG | + | chr6_1:97169090-97169109 | Msa0900920:intron | 25.0% |
| ! | TTACCGAGTTAATATACTAA+AGG | - | chr6_1:97169096-97169115 | None:intergenic | 25.0% |
| ! | TAGTATATTAACTCGGTAAA+TGG | + | chr6_1:97169097-97169116 | Msa0900920:intron | 25.0% |
| ! | AGTATATTAACTCGGTAAAT+GGG | + | chr6_1:97169098-97169117 | Msa0900920:intron | 25.0% |
| ! | ACCTATTTAATGTGATTAGT+TGG | + | chr6_1:97169161-97169180 | Msa0900920:intron | 25.0% |
| ! | ACCAACTAATCACATTAAAT+AGG | - | chr6_1:97169165-97169184 | None:intergenic | 25.0% |
| ! | GAGGATATTAAAAGCAAATA+AGG | + | chr6_1:97169377-97169396 | Msa0900920:CDS | 25.0% |
| ! | TTAAAAGCAAATAAGGTTGA+CGG | + | chr6_1:97169384-97169403 | Msa0900920:CDS | 25.0% |
| !!! | TTTTTTTAGTGTGTTATGTG+AGG | + | chr6_1:97169886-97169905 | Msa0900920:intron | 25.0% |
| ! | ATATTAATAACCTAAGGCAA+TGG | - | chr6_1:97170040-97170059 | None:intergenic | 25.0% |
| ! | ATACTCTAATGAAAGAAAAC+AGG | - | chr6_1:97170500-97170519 | None:intergenic | 25.0% |
| ! | ATATTTGAATTGACAGAACA+AGG | + | chr6_1:97170544-97170563 | Msa0900920:intron | 25.0% |
| ! | TCAAATATAGAGAATAATGC+TGG | + | chr6_1:97170619-97170638 | Msa0900920:intron | 25.0% |
| ! | AAACAAAACTCGCAAAATTA+GGG | - | chr6_1:97170789-97170808 | None:intergenic | 25.0% |
| ! | AAAACAAAACTCGCAAAATT+AGG | - | chr6_1:97170790-97170809 | None:intergenic | 25.0% |
| ! | ATTTACCAAAGCAACAAAAT+TGG | + | chr6_1:97171237-97171256 | Msa0900920:CDS | 25.0% |
| ATCTACCAACTTATTAGTAC+GGG | - | chr6_1:97168263-97168282 | None:intergenic | 30.0% | |
| TCTTCATATCCACAAGATAT+CGG | - | chr6_1:97168339-97168358 | None:intergenic | 30.0% | |
| AAGACCTATATAGGAATGAA+TGG | + | chr6_1:97168355-97168374 | Msa0900920:CDS | 30.0% | |
| AGTACCATTCATTCCTATAT+AGG | - | chr6_1:97168362-97168381 | None:intergenic | 30.0% | |
| ACAAAGGTCTAGATGTTTAA+AGG | - | chr6_1:97168455-97168474 | None:intergenic | 30.0% | |
| TAAACATCTAGACCTTTGTT+TGG | + | chr6_1:97168456-97168475 | Msa0900920:CDS | 30.0% | |
| ! | CTGTATCATTCTTTTGTTGA+TGG | - | chr6_1:97168813-97168832 | None:intergenic | 30.0% |
| GATACAGTTATACACATTTC+TGG | + | chr6_1:97168826-97168845 | Msa0900920:CDS | 30.0% | |
| !!! | AAACCTTTTTTCAAATGCGA+AGG | + | chr6_1:97169060-97169079 | Msa0900920:CDS | 30.0% |
| TAACCTTCGCATTTGAAAAA+AGG | - | chr6_1:97169066-97169085 | None:intergenic | 30.0% | |
| ! | TTAATGTGATTAGTTGGTTG+AGG | + | chr6_1:97169167-97169186 | Msa0900920:intron | 30.0% |
| AAGCTTGCACATCAAAAAAA+GGG | - | chr6_1:97169281-97169300 | None:intergenic | 30.0% | |
| TAAGCTTGCACATCAAAAAA+AGG | - | chr6_1:97169282-97169301 | None:intergenic | 30.0% | |
| ! | TTTTGATGTGCAAGCTTATA+TGG | + | chr6_1:97169284-97169303 | Msa0900920:CDS | 30.0% |
| AAAGTGTAGTAAGATTGATG+CGG | + | chr6_1:97169470-97169489 | Msa0900920:CDS | 30.0% | |
| GAAAAGCAGAAGAAAATGAT+GGG | + | chr6_1:97169520-97169539 | Msa0900920:CDS | 30.0% | |
| TGGTGAAGAGGAAAAAAAAT+TGG | + | chr6_1:97169566-97169585 | Msa0900920:CDS | 30.0% | |
| TTGGAAGAAGAAAATGATGA+TGG | + | chr6_1:97169585-97169604 | Msa0900920:CDS | 30.0% | |
| TGGAAGAAGAAAATGATGAT+GGG | + | chr6_1:97169586-97169605 | Msa0900920:CDS | 30.0% | |
| GGGTGAAGAAGAAAAAAAAA+TGG | + | chr6_1:97169632-97169651 | Msa0900920:CDS | 30.0% | |
| ATGGAAGAAGATAAAGACAA+TGG | + | chr6_1:97169651-97169670 | Msa0900920:CDS | 30.0% | |
| TGGAAGAAGATAAAGACAAT+GGG | + | chr6_1:97169652-97169671 | Msa0900920:CDS | 30.0% | |
| TGGCTGAAAAGGAAAAAAAA+AGG | + | chr6_1:97169697-97169716 | Msa0900920:CDS | 30.0% | |
| TTTATTCTGCACACATGAAA+AGG | + | chr6_1:97169755-97169774 | Msa0900920:CDS | 30.0% | |
| !!! | AACTACATTTTTTCATGTCG+CGG | + | chr6_1:97169817-97169836 | Msa0900920:intron | 30.0% |
| CCAGCAATATTAATAACCTA+AGG | - | chr6_1:97170046-97170065 | None:intergenic | 30.0% | |
| CCTTAGGTTATTAATATTGC+TGG | + | chr6_1:97170043-97170062 | Msa0900920:intron | 30.0% | |
| !! | TGTCAGATTATTTTTCGGTA+CGG | + | chr6_1:97170122-97170141 | Msa0900920:intron | 30.0% |
| TAAAGGTTGAATACACATCA+CGG | - | chr6_1:97170175-97170194 | None:intergenic | 30.0% | |
| !! | TGAGGTAGTTGATGATTTAA+AGG | + | chr6_1:97170230-97170249 | Msa0900920:CDS | 30.0% |
| AGTCATCATTATGATGTTGT+AGG | + | chr6_1:97170376-97170395 | Msa0900920:intron | 30.0% | |
| !!! | AGGAGTTTGCTGATTTATTT+TGG | + | chr6_1:97170564-97170583 | Msa0900920:intron | 30.0% |
| !!! | CATTGTGGTTTTGTCTATAT+GGG | + | chr6_1:97170678-97170697 | Msa0900920:intron | 30.0% |
| AACAAAACTCGCAAAATTAG+GGG | - | chr6_1:97170788-97170807 | None:intergenic | 30.0% | |
| ! | GTAGTGGAATTGATGAATAA+AGG | + | chr6_1:97171161-97171180 | Msa0900920:CDS | 30.0% |
| AATAAAGGAGCGAACAATAA+AGG | + | chr6_1:97171176-97171195 | Msa0900920:CDS | 30.0% | |
| GAACAATAAAGGAGATATGT+TGG | + | chr6_1:97171187-97171206 | Msa0900920:CDS | 30.0% | |
| AGATATGTTGGAATCTTCTT+TGG | + | chr6_1:97171199-97171218 | Msa0900920:CDS | 30.0% | |
| !! | ACTAACCAATTTTGTTGCTT+TGG | - | chr6_1:97171245-97171264 | None:intergenic | 30.0% |
| TGAGGGAAAACAAACGAAAA+AGG | + | chr6_1:97168110-97168129 | Msa0900920:CDS | 35.0% | |
| GAGGGAAAACAAACGAAAAA+GGG | + | chr6_1:97168111-97168130 | Msa0900920:CDS | 35.0% | |
| TCTACCAACTTATTAGTACG+GGG | - | chr6_1:97168262-97168281 | None:intergenic | 35.0% | |
| ATATCCACAAGATATCGGAA+CGG | - | chr6_1:97168334-97168353 | None:intergenic | 35.0% | |
| GTGGATATGAAGACCTATAT+AGG | + | chr6_1:97168346-97168365 | Msa0900920:CDS | 35.0% | |
| TGAAGGAATTATTGCATAGG+TGG | + | chr6_1:97168386-97168405 | Msa0900920:CDS | 35.0% | |
| GAAGGAATTATTGCATAGGT+GGG | + | chr6_1:97168387-97168406 | Msa0900920:CDS | 35.0% | |
| !! | TATTGTAGGAGAGTGTTTAC+CGG | + | chr6_1:97168492-97168511 | Msa0900920:CDS | 35.0% |
| TTTACCGGAAACTAGTGATA+GGG | + | chr6_1:97168507-97168526 | Msa0900920:CDS | 35.0% | |
| TAGTGTACATTCTAAGCTGA+AGG | + | chr6_1:97168579-97168598 | Msa0900920:CDS | 35.0% | |
| CGGAAAATATAACACACACA+AGG | - | chr6_1:97168659-97168678 | None:intergenic | 35.0% | |
| ACGCTCTTAGTACCTATAAT+TGG | + | chr6_1:97168731-97168750 | Msa0900920:CDS | 35.0% | |
| CGCTCTTAGTACCTATAATT+GGG | + | chr6_1:97168732-97168751 | Msa0900920:CDS | 35.0% | |
| GCTCTTAGTACCTATAATTG+GGG | + | chr6_1:97168733-97168752 | Msa0900920:CDS | 35.0% | |
| GTCATTTGATTAGATATGGG+CGG | + | chr6_1:97168946-97168965 | Msa0900920:intron | 35.0% | |
| ! | GTTTTCCACGCATTAACAAT+TGG | + | chr6_1:97169005-97169024 | Msa0900920:CDS | 35.0% |
| CATTAACAATTGGACCAAAG+TGG | + | chr6_1:97169015-97169034 | Msa0900920:CDS | 35.0% | |
| !! | TTTTCCATGTCTTGTTGTGT+TGG | - | chr6_1:97169201-97169220 | None:intergenic | 35.0% |
| ACCAACTTGAGAATGGTTAA+CGG | - | chr6_1:97169241-97169260 | None:intergenic | 35.0% | |
| !! | AACCATTCTCAAGTTGGTAT+TGG | + | chr6_1:97169243-97169262 | Msa0900920:CDS | 35.0% |
| CTTATATGGCTGAACATCAA+AGG | + | chr6_1:97169298-97169317 | Msa0900920:CDS | 35.0% | |
| GGAAAGCAAATCTTTGTGTT+CGG | - | chr6_1:97169331-97169350 | None:intergenic | 35.0% | |
| ! | AACACAAAGATTTGCTTTCC+CGG | + | chr6_1:97169331-97169350 | Msa0900920:CDS | 35.0% |
| ATATCCTCATATCATCCTCA+AGG | - | chr6_1:97169365-97169384 | None:intergenic | 35.0% | |
| AAGATTGATGCGGATAATGA+TGG | + | chr6_1:97169480-97169499 | Msa0900920:CDS | 35.0% | |
| AGATTGATGCGGATAATGAT+GGG | + | chr6_1:97169481-97169500 | Msa0900920:CDS | 35.0% | |
| !! | TAATGATGGGTTGAAAAGTG+AGG | + | chr6_1:97169494-97169513 | Msa0900920:CDS | 35.0% |
| GGAAAAGCAGAAGAAAATGA+TGG | + | chr6_1:97169519-97169538 | Msa0900920:CDS | 35.0% | |
| ! | AGAAAATGATGGGATGAAGT+TGG | + | chr6_1:97169530-97169549 | Msa0900920:CDS | 35.0% |
| AAGTTGGATGATGAAGATGT+TGG | + | chr6_1:97169546-97169565 | Msa0900920:CDS | 35.0% | |
| !! | AGAAAATGATGATGGGATGA+AGG | + | chr6_1:97169593-97169612 | Msa0900920:CDS | 35.0% |
| !! | AAGGTTGATGATGAAGATGT+GGG | + | chr6_1:97169612-97169631 | Msa0900920:CDS | 35.0% |
| AGAAGATAAAGACAATGGGA+TGG | + | chr6_1:97169656-97169675 | Msa0900920:CDS | 35.0% | |
| ! | TGATGATGATATGGCTGAAA+AGG | + | chr6_1:97169686-97169705 | Msa0900920:CDS | 35.0% |
| !!! | ACTACATTTTTTCATGTCGC+GGG | + | chr6_1:97169818-97169837 | Msa0900920:intron | 35.0% |
| ! | TGTTTGTTAACCATTGCCTT+AGG | + | chr6_1:97170027-97170046 | Msa0900920:intron | 35.0% |
| AGGTTATTAATATTGCTGGC+AGG | + | chr6_1:97170047-97170066 | Msa0900920:intron | 35.0% | |
| CATGATGAAGTTCGAAAACA+TGG | + | chr6_1:97170079-97170098 | Msa0900920:CDS | 35.0% | |
| TGTTAGGCATGGGATAATAA+AGG | - | chr6_1:97170192-97170211 | None:intergenic | 35.0% | |
| AGGTGTAGATGATTTCTGAT+TGG | + | chr6_1:97170396-97170415 | Msa0900920:intron | 35.0% | |
| ! | TTGTCTAGAATGTTGATGAG+TGG | + | chr6_1:97170425-97170444 | Msa0900920:intron | 35.0% |
| ! | TGTCTAGAATGTTGATGAGT+GGG | + | chr6_1:97170426-97170445 | Msa0900920:intron | 35.0% |
| CTCTACCTAAAATTCCCTTT+AGG | + | chr6_1:97170643-97170662 | Msa0900920:intron | 35.0% | |
| !!! | GCATTGTGGTTTTGTCTATA+TGG | + | chr6_1:97170677-97170696 | Msa0900920:intron | 35.0% |
| GGGTTTGTGTTGTATTAGTT+CGG | + | chr6_1:97170698-97170717 | Msa0900920:intron | 35.0% | |
| TTTGTGTTGTATTAGTTCGG+TGG | + | chr6_1:97170701-97170720 | Msa0900920:intron | 35.0% | |
| TTGTGTTGTATTAGTTCGGT+GGG | + | chr6_1:97170702-97170721 | Msa0900920:intron | 35.0% | |
| ! | GTTTTGTGTGGTTTTTTGTG+CGG | + | chr6_1:97170731-97170750 | Msa0900920:intron | 35.0% |
| ! | TTTTGTGTGGTTTTTTGTGC+GGG | + | chr6_1:97170732-97170751 | Msa0900920:intron | 35.0% |
| GCAAAATTAGGGGTTACAAT+AGG | - | chr6_1:97170778-97170797 | None:intergenic | 35.0% | |
| !!! | CGAATTTGTTTTATGCAACG+TGG | + | chr6_1:97170873-97170892 | Msa0900920:intron | 35.0% |
| ! | TTACAGAAAGTCCGTTTTGA+AGG | + | chr6_1:97171137-97171156 | Msa0900920:intron | 35.0% |
| !! | TACAGAAAGTCCGTTTTGAA+GGG | + | chr6_1:97171138-97171157 | Msa0900920:intron | 35.0% |
| TATGTTGGAATCTTCTTTGG+AGG | + | chr6_1:97171202-97171221 | Msa0900920:CDS | 35.0% | |
| CGAAAAAGGGATTGTGTTGT+TGG | + | chr6_1:97168124-97168143 | Msa0900920:CDS | 40.0% | |
| GGCATTTGAGTCTTTATCTG+TGG | - | chr6_1:97168241-97168260 | None:intergenic | 40.0% | |
| AATGCCCCGTACTAATAAGT+TGG | + | chr6_1:97168255-97168274 | Msa0900920:CDS | 40.0% | |
| TTTGCGCATCAGACAATGTT+CGG | - | chr6_1:97168291-97168310 | None:intergenic | 40.0% | |
| ! | AGTAGCTTGGGATTTAGAGT+AGG | + | chr6_1:97168415-97168434 | Msa0900920:CDS | 40.0% |
| !! | CTAGACCTTTGTTTGGCTTT+AGG | + | chr6_1:97168463-97168482 | Msa0900920:CDS | 40.0% |
| GCAAACCTAAAGCCAAACAA+AGG | - | chr6_1:97168471-97168490 | None:intergenic | 40.0% | |
| ! | GCTTTAGGTTTGCCTATTGT+AGG | + | chr6_1:97168478-97168497 | Msa0900920:CDS | 40.0% |
| GGTAAACACTCTCCTACAAT+AGG | - | chr6_1:97168493-97168512 | None:intergenic | 40.0% | |
| GTTTACCGGAAACTAGTGAT+AGG | + | chr6_1:97168506-97168525 | Msa0900920:CDS | 40.0% | |
| ! | CTAACCCTATCACTAGTTTC+CGG | - | chr6_1:97168514-97168533 | None:intergenic | 40.0% |
| AACAGCAACACCCCAATTAT+AGG | - | chr6_1:97168746-97168765 | None:intergenic | 40.0% | |
| GAACATTTATCCCTAACCAG+TGG | + | chr6_1:97168971-97168990 | Msa0900920:CDS | 40.0% | |
| ! | CTTAATTGGACCACTGGTTA+GGG | - | chr6_1:97168984-97169003 | None:intergenic | 40.0% |
| AAAACGCTTAATTGGACCAC+TGG | - | chr6_1:97168990-97169009 | None:intergenic | 40.0% | |
| ATGCGTGGAAAACGCTTAAT+TGG | - | chr6_1:97168998-97169017 | None:intergenic | 40.0% | |
| TTGGTCCAATTGTTAATGCG+TGG | - | chr6_1:97169013-97169032 | None:intergenic | 40.0% | |
| AACAATTGGACCAAAGTGGA+TGG | + | chr6_1:97169019-97169038 | Msa0900920:CDS | 40.0% | |
| ! | TGATTAGTTGGTTGAGGACT+TGG | + | chr6_1:97169173-97169192 | Msa0900920:intron | 40.0% |
| CTCCAATACCAACTTGAGAA+TGG | - | chr6_1:97169248-97169267 | None:intergenic | 40.0% | |
| TATGGCTGAACATCAAAGGT+TGG | + | chr6_1:97169302-97169321 | Msa0900920:CDS | 40.0% | |
| ! | ACACAAAGATTTGCTTTCCC+GGG | + | chr6_1:97169332-97169351 | Msa0900920:CDS | 40.0% |
| CAATCCTTGAGGATGATATG+AGG | + | chr6_1:97169358-97169377 | Msa0900920:CDS | 40.0% | |
| AAGCAAATAAGGTTGACGGT+AGG | + | chr6_1:97169388-97169407 | Msa0900920:CDS | 40.0% | |
| AGCAAATAAGGTTGACGGTA+GGG | + | chr6_1:97169389-97169408 | Msa0900920:CDS | 40.0% | |
| ! | TGATGAAGATGTTGGTGAAG+AGG | + | chr6_1:97169554-97169573 | Msa0900920:CDS | 40.0% |
| !! | GAAGGTTGATGATGAAGATG+TGG | + | chr6_1:97169611-97169630 | Msa0900920:CDS | 40.0% |
| TAAAGACAATGGGATGGAGT+TGG | + | chr6_1:97169662-97169681 | Msa0900920:CDS | 40.0% | |
| ! | GGAGTTGGATGATGATGATA+TGG | + | chr6_1:97169677-97169696 | Msa0900920:CDS | 40.0% |
| ! | GGAGTTTTTCCAATGCATGA+AGG | + | chr6_1:97169931-97169950 | Msa0900920:CDS | 40.0% |
| ! | GATTTAAAGGCACATCCTGA+AGG | + | chr6_1:97170243-97170262 | Msa0900920:CDS | 40.0% |
| TCAAGATGTATATGCCTCGT+TGG | + | chr6_1:97170295-97170314 | Msa0900920:CDS | 40.0% | |
| AAGAAAACAGGCAGTGATGA+AGG | - | chr6_1:97170488-97170507 | None:intergenic | 40.0% | |
| ! | CACTGCCTAAAGGGAATTTT+AGG | - | chr6_1:97170651-97170670 | None:intergenic | 40.0% |
| CTAAAATTCCCTTTAGGCAG+TGG | + | chr6_1:97170649-97170668 | Msa0900920:intron | 40.0% | |
| ! | TGTGTTGTATTAGTTCGGTG+GGG | + | chr6_1:97170703-97170722 | Msa0900920:intron | 40.0% |
| !!! | TTTGTGTGGTTTTTTGTGCG+GGG | + | chr6_1:97170733-97170752 | Msa0900920:intron | 40.0% |
| CATACATTGTCCTCTTCCTA+TGG | - | chr6_1:97170976-97170995 | None:intergenic | 40.0% | |
| ACAGTGAAAGAAATGCCTCA+AGG | + | chr6_1:97171011-97171030 | Msa0900920:CDS | 40.0% | |
| !!! | ACAGAAAGTCCGTTTTGAAG+GGG | + | chr6_1:97171139-97171158 | Msa0900920:intron | 40.0% |
| ATTCCACTACCCCTTCAAAA+CGG | - | chr6_1:97171151-97171170 | None:intergenic | 40.0% | |
| ! | ATCTTCTTTGGAGGTTGTAG+TGG | + | chr6_1:97171211-97171230 | Msa0900920:CDS | 40.0% |
| AACTCCGTTCCGATATCTTG+TGG | + | chr6_1:97168327-97168346 | Msa0900920:CDS | 45.0% | |
| ! | TGGGATTTAGAGTAGGCGTT+AGG | + | chr6_1:97168422-97168441 | Msa0900920:CDS | 45.0% |
| AAGCTGAAGGTCCTTCAAGA+AGG | + | chr6_1:97168592-97168611 | Msa0900920:CDS | 45.0% | |
| AGCTGAAGGTCCTTCAAGAA+GGG | + | chr6_1:97168593-97168612 | Msa0900920:CDS | 45.0% | |
| TCAATACCTGCAATACGGCT+GGG | - | chr6_1:97168855-97168874 | None:intergenic | 45.0% | |
| TTCAATACCTGCAATACGGC+TGG | - | chr6_1:97168856-97168875 | None:intergenic | 45.0% | |
| ! | GCTTAATTGGACCACTGGTT+AGG | - | chr6_1:97168985-97169004 | None:intergenic | 45.0% |
| AATTGGACCAAAGTGGATGG+AGG | + | chr6_1:97169022-97169041 | Msa0900920:CDS | 45.0% | |
| AACATGACCTCCATCCACTT+TGG | - | chr6_1:97169032-97169051 | None:intergenic | 45.0% | |
| GGTTCCAACACAACAAGACA+TGG | + | chr6_1:97169194-97169213 | Msa0900920:CDS | 45.0% | |
| GCCGTTAACCATTCTCAAGT+TGG | + | chr6_1:97169237-97169256 | Msa0900920:CDS | 45.0% | |
| ATCCTCAAGGATTGAAACCC+GGG | - | chr6_1:97169352-97169371 | None:intergenic | 45.0% | |
| CATCCTCAAGGATTGAAACC+CGG | - | chr6_1:97169353-97169372 | None:intergenic | 45.0% | |
| TATTCCGATGCCAAGTAGCA+TGG | + | chr6_1:97169416-97169435 | Msa0900920:CDS | 45.0% | |
| ! | ACTTCCATGCTACTTGGCAT+CGG | - | chr6_1:97169423-97169442 | None:intergenic | 45.0% |
| ATGCCAAGTAGCATGGAAGT+AGG | + | chr6_1:97169423-97169442 | Msa0900920:CDS | 45.0% | |
| CTTCCTACTTCCATGCTACT+TGG | - | chr6_1:97169429-97169448 | None:intergenic | 45.0% | |
| AGTAGCATGGAAGTAGGAAG+TGG | + | chr6_1:97169429-97169448 | Msa0900920:CDS | 45.0% | |
| GTAGCATGGAAGTAGGAAGT+GGG | + | chr6_1:97169430-97169449 | Msa0900920:CDS | 45.0% | |
| GGAAGTGGGTCAAAACATGT+AGG | + | chr6_1:97169444-97169463 | Msa0900920:CDS | 45.0% | |
| !! | TGATGGGTTGAAAAGTGAGG+CGG | + | chr6_1:97169497-97169516 | Msa0900920:CDS | 45.0% |
| CATGCATTGGAAAAACTCCC+CGG | - | chr6_1:97169930-97169949 | None:intergenic | 45.0% | |
| ! | TTTTCCAATGCATGAAGGCG+AGG | + | chr6_1:97169936-97169955 | Msa0900920:CDS | 45.0% |
| CATTGGAGTTTACGTCCTTC+AGG | - | chr6_1:97170261-97170280 | None:intergenic | 45.0% | |
| CTGAAGGACGTAAACTCCAA+TGG | + | chr6_1:97170259-97170278 | Msa0900920:CDS | 45.0% | |
| !! | GTAAACTCCAATGGACTGAG+CGG | + | chr6_1:97170268-97170287 | Msa0900920:CDS | 45.0% |
| TGAATTTCCGCTCAGTCCAT+TGG | - | chr6_1:97170278-97170297 | None:intergenic | 45.0% | |
| ! | TTCCCTTTAGGCAGTGGATT+TGG | + | chr6_1:97170655-97170674 | Msa0900920:intron | 45.0% |
| TGCCAAATCCACTGCCTAAA+GGG | - | chr6_1:97170660-97170679 | None:intergenic | 45.0% | |
| ATGCCAAATCCACTGCCTAA+AGG | - | chr6_1:97170661-97170680 | None:intergenic | 45.0% | |
| ! | GTGTTGTATTAGTTCGGTGG+GGG | + | chr6_1:97170704-97170723 | Msa0900920:intron | 45.0% |
| ! | TGTTGTATTAGTTCGGTGGG+GGG | + | chr6_1:97170705-97170724 | Msa0900920:intron | 45.0% |
| CATGTTACGTGTTGGACCAT+AGG | + | chr6_1:97170957-97170976 | Msa0900920:CDS | 45.0% | |
| GAAGAGGACAATGTATGTGC+TGG | + | chr6_1:97170979-97170998 | Msa0900920:CDS | 45.0% | |
| ATTATCCAAACGCTGCCTTG+AGG | - | chr6_1:97171029-97171048 | None:intergenic | 45.0% | |
| GCAGCGTTTGGATAATGCAA+TGG | + | chr6_1:97171033-97171052 | Msa0900920:CDS | 45.0% | |
| ! | TTCTTTGGAGGTTGTAGTGG+TGG | + | chr6_1:97171214-97171233 | Msa0900920:CDS | 45.0% |
| !!! | TAAATTTTATCATTAAAATT+AGG | + | chr6_1:97170901-97170920 | Msa0900920:intron | 5.0% |
| TAGGTGGGATGCAAGTAGCT+TGG | + | chr6_1:97168402-97168421 | Msa0900920:CDS | 50.0% | |
| AGGTGGGATGCAAGTAGCTT+GGG | + | chr6_1:97168403-97168422 | Msa0900920:CDS | 50.0% | |
| TAGAGTAGGCGTTAGGACTG+TGG | + | chr6_1:97168429-97168448 | Msa0900920:CDS | 50.0% | |
| GCTGAAGGTCCTTCAAGAAG+GGG | + | chr6_1:97168594-97168613 | Msa0900920:CDS | 50.0% | |
| CTACGTTGTCCCCTTCTTGA+AGG | - | chr6_1:97168606-97168625 | None:intergenic | 50.0% | |
| TTCCCGGGTTTCAATCCTTG+AGG | + | chr6_1:97169347-97169366 | Msa0900920:CDS | 50.0% | |
| !! | GATGGGTTGAAAAGTGAGGC+GGG | + | chr6_1:97169498-97169517 | Msa0900920:CDS | 50.0% |
| GTAGATGAGTTGCGTGTTGC+CGG | + | chr6_1:97169908-97169927 | Msa0900920:CDS | 50.0% | |
| TAGATGAGTTGCGTGTTGCC+GGG | + | chr6_1:97169909-97169928 | Msa0900920:CDS | 50.0% | |
| ACTTCCTCGCCTTCATGCAT+TGG | - | chr6_1:97169943-97169962 | None:intergenic | 50.0% | |
| AATGCATGAAGGCGAGGAAG+TGG | + | chr6_1:97169942-97169961 | Msa0900920:CDS | 50.0% | |
| ATGCATGAAGGCGAGGAAGT+GGG | + | chr6_1:97169943-97169962 | Msa0900920:CDS | 50.0% | |
| TCAAGTGTCTTGGTCCAACG+AGG | - | chr6_1:97170312-97170331 | None:intergenic | 50.0% | |
| TCGTTGGACCAAGACACTTG+AGG | + | chr6_1:97170311-97170330 | Msa0900920:CDS | 50.0% | |
| ! | AGGCAGTGGATTTGGCATTG+TGG | + | chr6_1:97170663-97170682 | Msa0900920:intron | 50.0% |
| GCGGGGTTTACGCTTATGTT+TGG | + | chr6_1:97170750-97170769 | Msa0900920:intron | 50.0% | |
| TATTAGGCAGAGTCGTCGCA+AGG | - | chr6_1:97170815-97170834 | None:intergenic | 50.0% | |
| TGTCCAGTGGTCTTCGAACT+GGG | - | chr6_1:97170939-97170958 | None:intergenic | 50.0% | |
| ATGTCCAGTGGTCTTCGAAC+TGG | - | chr6_1:97170940-97170959 | None:intergenic | 50.0% | |
| CCAACACGTAACATGTCCAG+TGG | - | chr6_1:97170952-97170971 | None:intergenic | 50.0% | |
| CCACTGGACATGTTACGTGT+TGG | + | chr6_1:97170949-97170968 | Msa0900920:CDS | 50.0% | |
| ACGTGTTGGACCATAGGAAG+AGG | + | chr6_1:97170963-97170982 | Msa0900920:CDS | 50.0% | |
| AAATGCCTCAAGGCAGCGTT+TGG | + | chr6_1:97171021-97171040 | Msa0900920:CDS | 50.0% | |
| !!! | AGTCCGTTTTGAAGGGGTAG+TGG | + | chr6_1:97171145-97171164 | Msa0900920:CDS | 50.0% |
| AGATGAGTTGCGTGTTGCCG+GGG | + | chr6_1:97169910-97169929 | Msa0900920:CDS | 55.0% | |
| !! | CCAAGACACTTGAGGCGTTG+CGG | + | chr6_1:97170319-97170338 | Msa0900920:CDS | 55.0% |
| ! | GTATTAGTTCGGTGGGGGGT+TGG | + | chr6_1:97170709-97170728 | Msa0900920:intron | 55.0% |
| CAGTGGTCTTCGAACTGGGT+TGG | - | chr6_1:97170935-97170954 | None:intergenic | 55.0% | |
| CAACCCAGTTCGAAGACCAC+TGG | + | chr6_1:97170933-97170952 | Msa0900920:CDS | 55.0% | |
| TGGTTGCCCAGCCGTATTGC+AGG | + | chr6_1:97168846-97168865 | Msa0900920:CDS | 60.0% | |
| CCGCAACGCCTCAAGTGTCT+TGG | - | chr6_1:97170322-97170341 | None:intergenic | 60.0% | |
| !!! | GGTGGGGGGTTGGTTTTGTG+TGG | + | chr6_1:97170719-97170738 | Msa0900920:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 97168109 | 97171286 | 97168109 | ID=Msa0900920;Name=Msa0900920 |
| chr6_1 | mRNA | 97168109 | 97171286 | 97168109 | ID=Msa0900920-mRNA-1;Parent=Msa0900920;Name=Msa0900920-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0.75|0.44|1|1|1|9|0|657 |
| chr6_1 | exon | 97168109 | 97168147 | 97168109 | ID=Msa0900920-mRNA-1:exon:16955;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97168238 | 97168867 | 97168238 | ID=Msa0900920-mRNA-1:exon:16956;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97168959 | 97169081 | 97168959 | ID=Msa0900920-mRNA-1:exon:16957;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97169180 | 97169787 | 97169180 | ID=Msa0900920-mRNA-1:exon:16958;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97169895 | 97169976 | 97169895 | ID=Msa0900920-mRNA-1:exon:16959;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97170049 | 97170138 | 97170049 | ID=Msa0900920-mRNA-1:exon:16960;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97170228 | 97170353 | 97170228 | ID=Msa0900920-mRNA-1:exon:16961;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97170923 | 97171054 | 97170923 | ID=Msa0900920-mRNA-1:exon:16962;Parent=Msa0900920-mRNA-1 |
| chr6_1 | exon | 97171143 | 97171286 | 97171143 | ID=Msa0900920-mRNA-1:exon:16963;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97168109 | 97168147 | 97168109 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97168238 | 97168867 | 97168238 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97168959 | 97169081 | 97168959 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97169180 | 97169787 | 97169180 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97169895 | 97169976 | 97169895 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97170049 | 97170138 | 97170049 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97170228 | 97170353 | 97170228 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97170923 | 97171054 | 97170923 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| chr6_1 | CDS | 97171143 | 97171286 | 97171143 | ID=Msa0900920-mRNA-1:cds;Parent=Msa0900920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
