AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111630 MtrunA17_Chr7g0244941 97.419 310 6 1 1 308 1 310 0.0 613
Msa1111630 MtrunA17_Chr7g0257051 32.184 174 106 2 127 296 54 219 8.23e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111630 AT2G38550.1 46.789 327 138 11 4 303 2 319 2.48e-80 247
Msa1111630 AT3G57280.1 28.931 159 102 3 146 296 57 212 5.71e-15 73.2

Find 107 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAAATTTACTCTCTTA+TGG 0.180959 7_3:-57346332 None:intergenic
GATGGGTGTGGTTGAGTTTA+GGG 0.212767 7_3:-57340782 None:intergenic
GATGATCTCAGCAAAGTTTC+TGG 0.226891 7_3:+57342347 Msa1111630:CDS
AGATGGGTGTGGTTGAGTTT+AGG 0.238483 7_3:-57340783 None:intergenic
CAAATCATGTCTTGCCTTAT+CGG 0.253536 7_3:-57342216 None:intergenic
TTCCTTTCCTTTATGATAAC+AGG 0.269414 7_3:+57343786 Msa1111630:CDS
CGGAAAATGCAGAGGAAGTT+TGG 0.270047 7_3:-57340591 None:intergenic
CTGCGTGAGATCAGCATATT+AGG 0.305459 7_3:+57345127 Msa1111630:CDS
GATGTTTCTCTTACCAAATA+AGG 0.308050 7_3:+57346404 Msa1111630:three_prime_UTR
CAGGAAGCATTGCAGCAATA+AGG 0.309359 7_3:+57343805 Msa1111630:CDS
GGGCGAAGAAAACGAGAGTT+TGG 0.320704 7_3:-57340703 None:intergenic
GCCCTCTTCTCTTGCTTTGA+AGG 0.322787 7_3:+57343899 Msa1111630:CDS
TTGCTGATGGTTAGGATTAG+TGG 0.332050 7_3:+57346143 Msa1111630:three_prime_UTR
GCATTGCAGCAATAAGGTTT+GGG 0.336448 7_3:+57343811 Msa1111630:CDS
TTAGAAGGTAAACCACAAAA+AGG 0.338660 7_3:+57345841 Msa1111630:CDS
GAAACTCATCGAAGCCATTT+AGG 0.344874 7_3:-57340733 None:intergenic
CTTCTTAGAATACACTTCAT+AGG 0.347106 7_3:-57342147 None:intergenic
CAGCAAAGTTTCTGGAGTTC+GGG 0.348326 7_3:+57342355 Msa1111630:CDS
TCAGCAAAGTTTCTGGAGTT+CGG 0.355747 7_3:+57342354 Msa1111630:CDS
GAAAACGAGAGTTTGGGAAT+TGG 0.366535 7_3:-57340696 None:intergenic
AGCATTGCAGCAATAAGGTT+TGG 0.368282 7_3:+57343810 Msa1111630:CDS
AATCAAACAGGTTGGTTGTT+CGG 0.378634 7_3:-57340611 None:intergenic
CGAAGCCATTTAGGTTGAAA+AGG 0.389526 7_3:-57340724 None:intergenic
AATGCTTCCTGTTATCATAA+AGG 0.390887 7_3:-57343793 None:intergenic
CCCTCTTCTCTTGCTTTGAA+GGG 0.393105 7_3:+57343900 Msa1111630:CDS
CTTATTTCACTGCTTTGATC+AGG 0.394428 7_3:+57345265 Msa1111630:CDS
AACAATGGAATCAATGAAAG+AGG 0.408728 7_3:-57340656 None:intergenic
CGGTTTGCTGCGTTGATTGA+GGG 0.408744 7_3:-57340880 None:intergenic
GGAAGCATGGAAGCAGGCTT+TGG 0.413475 7_3:+57342076 Msa1111630:CDS
TTTACATGCTTACTTGAGCC+TGG 0.419544 7_3:+57346355 Msa1111630:three_prime_UTR
TGGTTAGGATTAGTGGTTCA+TGG 0.420233 7_3:+57346150 Msa1111630:three_prime_UTR
CAGAGGAAGTTTGGAATAAT+CGG 0.424723 7_3:-57340582 None:intergenic
AAGACTCGTTGCTGATGGTT+AGG 0.426716 7_3:+57346135 Msa1111630:three_prime_UTR
ACTTTGCTGAGATCATCATC+TGG 0.441046 7_3:-57342341 None:intergenic
TCCACAATTTCCTTCACCTC+AGG 0.451532 7_3:-57342305 None:intergenic
GCAGCGAAAACGAGGGTTAA+CGG 0.453399 7_3:-57340900 None:intergenic
AGCATATGATCTTACCTGTC+TGG 0.456066 7_3:-57343923 None:intergenic
CATTTGCAGTGGTGCGGTAG+CGG 0.456458 7_3:+57345795 Msa1111630:intron
TGCAGGTTTGTTACTATCTG+CGG 0.463565 7_3:+57343758 Msa1111630:intron
GCAGGTTTGTTACTATCTGC+GGG 0.468290 7_3:+57343759 Msa1111630:intron
TCAAACTTTGAAGGTGAAGC+AGG 0.469674 7_3:+57345865 Msa1111630:CDS
GTTGGGCTTGCAGCTATAGC+AGG 0.473435 7_3:+57345094 Msa1111630:intron
GGTGAAGTTGAGGTAGAGAA+GGG 0.479329 7_3:+57342023 Msa1111630:CDS
AGTGAAGAATGAAATCAAAC+AGG 0.484400 7_3:-57340623 None:intergenic
GGTTAGGATTAGTGGTTCAT+GGG 0.488878 7_3:+57346151 Msa1111630:three_prime_UTR
TTAGGTGGGATATTATGAAC+TGG 0.491232 7_3:+57346258 Msa1111630:three_prime_UTR
TGGTGAAGTTGAGGTAGAGA+AGG 0.492662 7_3:+57342022 Msa1111630:CDS
GTTGAAGATACAGGCCGATA+AGG 0.495852 7_3:+57342202 Msa1111630:CDS
AGGAAGAGAGAGTTTGAAAG+TGG 0.502707 7_3:-57340850 None:intergenic
GCAGGCTTTGGATACATTCA+AGG 0.503712 7_3:+57342088 Msa1111630:CDS
CTTGCTTTGAAGGGCCAGAC+AGG 0.507466 7_3:+57343909 Msa1111630:CDS
GGCGAAGAAAACGAGAGTTT+GGG 0.510115 7_3:-57340702 None:intergenic
TTCAGAACAGTTGAAGATAC+AGG 0.510496 7_3:+57342193 Msa1111630:CDS
CTATGAAGTGTATTCTAAGA+AGG 0.512585 7_3:+57342148 Msa1111630:CDS
GAAGCCATTTAGGTTGAAAA+GGG 0.513339 7_3:-57340723 None:intergenic
TTACATGCTTACTTGAGCCT+GGG 0.514785 7_3:+57346356 Msa1111630:three_prime_UTR
AGGAAACTAGTTCAGTGATA+AGG 0.517640 7_3:+57345885 Msa1111630:exon
GCGAAGGAAATCACTGAAGA+AGG 0.518243 7_3:+57342248 Msa1111630:CDS
GAACAAGCTTTGAAGCTACA+AGG 0.523582 7_3:+57342110 Msa1111630:CDS
ACGGTTTGCTGCGTTGATTG+AGG 0.525103 7_3:-57340881 None:intergenic
ATCACAGGAAGCATGGAAGC+AGG 0.525285 7_3:+57342070 Msa1111630:CDS
ACCTGAGGTGAAGGAAATTG+TGG 0.531778 7_3:+57342304 Msa1111630:CDS
CCCTTCAAAGCAAGAGAAGA+GGG 0.533399 7_3:-57343900 None:intergenic
CTTTGCTGAGATCATCATCT+GGG 0.538560 7_3:-57342340 None:intergenic
GTTAGTTACTTTACAACCCC+AGG 0.543512 7_3:-57346373 None:intergenic
AGGAGGAATCACAGGAAGCA+TGG 0.543731 7_3:+57342063 Msa1111630:CDS
TGATTTGAGTGTTGTGGCGA+AGG 0.544539 7_3:+57342232 Msa1111630:CDS
CTTCGGAGAATGAGAGAGAT+GGG 0.547043 7_3:-57340799 None:intergenic
TGAGAATTCACCTGAGGTGA+AGG 0.548278 7_3:+57342295 Msa1111630:CDS
TAGGATTAGTGGTTCATGGG+TGG 0.549493 7_3:+57346154 Msa1111630:three_prime_UTR
TCGTCAAGACTCGTTGCTGA+TGG 0.551132 7_3:+57346130 Msa1111630:three_prime_UTR
GTGTTGCGGTGTTTGAGTAA+AGG 0.557167 7_3:-57340828 None:intergenic
ACTTCGGAGAATGAGAGAGA+TGG 0.559423 7_3:-57340800 None:intergenic
TAACACAGAAACTGAATCCA+TGG 0.560337 7_3:-57340757 None:intergenic
TACATGCTTACTTGAGCCTG+GGG 0.561937 7_3:+57346357 Msa1111630:three_prime_UTR
TAGTTCTGAGGAGGAATCAC+AGG 0.564462 7_3:+57342055 Msa1111630:CDS
GCGTAGCAGCAGCGAAAACG+AGG 0.568145 7_3:-57340908 None:intergenic
TTGAGTAAAGGATGAAACTT+CGG 0.573545 7_3:-57340816 None:intergenic
AAGAATGAAATCAAACAGGT+TGG 0.573943 7_3:-57340619 None:intergenic
TTGTGAACTGTATAGGATCA+TGG 0.575738 7_3:+57342002 Msa1111630:intron
GGGGAATGATGTTAGTTCTG+AGG 0.580091 7_3:+57342043 Msa1111630:CDS
AACAAGCTTTGAAGCTACAA+GGG 0.592755 7_3:+57342111 Msa1111630:CDS
CATTGCAGCAATAAGGTTTG+GGG 0.597894 7_3:+57343812 Msa1111630:CDS
GCCCTTCAAAGCAAGAGAAG+AGG 0.598127 7_3:-57343901 None:intergenic
GGACTTACAGAGTCATGTTG+AGG 0.601334 7_3:-57340930 None:intergenic
AAGACATGATTTGAGTGTTG+TGG 0.608087 7_3:+57342226 Msa1111630:CDS
ATAGGATCATGGTGAAGTTG+AGG 0.610635 7_3:+57342013 Msa1111630:intron
AGTGAAGACTGAAGAATGCA+AGG 0.611193 7_3:-57346309 None:intergenic
ACAATGGAATCAATGAAAGA+GGG 0.615187 7_3:-57340655 None:intergenic
AGGAAGTTTGGAATAATCGG+TGG 0.620484 7_3:-57340579 None:intergenic
TTCCTGTTATCATAAAGGAA+AGG 0.622707 7_3:-57343788 None:intergenic
GGCTTCGATGAGTTTCACCA+TGG 0.627621 7_3:+57340740 Msa1111630:CDS
GTGAAGTTGAGGTAGAGAAG+GGG 0.628557 7_3:+57342024 Msa1111630:CDS
GAATGATGTTAGTTCTGAGG+AGG 0.633496 7_3:+57342046 Msa1111630:CDS
ACAAGCTTTGAAGCTACAAG+GGG 0.644302 7_3:+57342112 Msa1111630:CDS
GTATTCTAAGAAGGCCATTG+TGG 0.645713 7_3:+57342157 Msa1111630:CDS
TGCTGCTGAGAATTCACCTG+AGG 0.654229 7_3:+57342289 Msa1111630:CDS
GAGAATGAGAGAGATGGGTG+TGG 0.656406 7_3:-57340794 None:intergenic
GCTGAGATCATCATCTGGGG+AGG 0.657948 7_3:-57342336 None:intergenic
TGGTTGTTCGGAAAATGCAG+AGG 0.658234 7_3:-57340599 None:intergenic
GGTTTGTTACTATCTGCGGG+TGG 0.661424 7_3:+57343762 Msa1111630:intron
GTTTGGCATTTGCAGTGGTG+CGG 0.667652 7_3:+57345789 Msa1111630:intron
AGTATCTTGCAAAACCACAA+TGG 0.670863 7_3:-57342171 None:intergenic
CGTTGATTGAGGGCATAACG+AGG 0.686365 7_3:-57340870 None:intergenic
AGAGTTTGAAAGTGGTGTTG+CGG 0.690634 7_3:-57340842 None:intergenic
TTTGCTGAGATCATCATCTG+GGG 0.696144 7_3:-57342339 None:intergenic
CGTAGCAGCAGCGAAAACGA+GGG 0.710585 7_3:-57340907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATTATAAAAATATTGAA+AGG + chr7_3:57341644-57341663 Msa1111630:intron 10.0%
!!! ATGGTTAATAAATTTTAAAT+CGG + chr7_3:57342423-57342442 Msa1111630:intron 10.0%
!!! TTTTTTTCTTAATTCTAAAA+AGG + chr7_3:57343972-57343991 Msa1111630:intron 10.0%
!!! TTTTTTCTTAATTCTAAAAA+GGG + chr7_3:57343973-57343992 Msa1111630:intron 10.0%
!! TGAAACAAAATTATATAAAA+AGG - chr7_3:57344860-57344879 None:intergenic 10.0%
!! TTTAGTTGAAAATTGAAATT+TGG - chr7_3:57341047-57341066 None:intergenic 15.0%
!! ATTTATGTTTGAATATATCT+AGG + chr7_3:57341321-57341340 Msa1111630:intron 15.0%
!!! AAAGACAAAAAAATGTTTTA+GGG - chr7_3:57341695-57341714 None:intergenic 15.0%
!!! AAAAGACAAAAAAATGTTTT+AGG - chr7_3:57341696-57341715 None:intergenic 15.0%
!!! TGGTTAATAAATTTTAAATC+GGG + chr7_3:57342424-57342443 Msa1111630:intron 15.0%
!!! GTAATTTTGTAATTTTAGTA+GGG - chr7_3:57344131-57344150 None:intergenic 15.0%
!!! TGTAATTTTGTAATTTTAGT+AGG - chr7_3:57344132-57344151 None:intergenic 15.0%
!! AATCACAATAAACAATTAAT+TGG + chr7_3:57344168-57344187 Msa1111630:intron 15.0%
!!! GATTTCTTTTAAGAAAAAAA+TGG - chr7_3:57344735-57344754 None:intergenic 15.0%
!!! TATTTATTTTTGAAAAGTAG+TGG + chr7_3:57346284-57346303 Msa1111630:three_prime_UTR 15.0%
!!! ACTTTATTCATTTTCTCAAA+TGG + chr7_3:57340964-57340983 Msa1111630:intron 20.0%
!!! CTTTATTCATTTTCTCAAAT+GGG + chr7_3:57340965-57340984 Msa1111630:intron 20.0%
!!! TTTATTCATTTTCTCAAATG+GGG + chr7_3:57340966-57340985 Msa1111630:intron 20.0%
!! ATAGATTATAGATAGATAGA+TGG + chr7_3:57341084-57341103 Msa1111630:intron 20.0%
!! AAAATTACAAAATGGCTAAA+AGG - chr7_3:57341139-57341158 None:intergenic 20.0%
!! TACATGTGAAAATTACAAAA+TGG - chr7_3:57341147-57341166 None:intergenic 20.0%
!!! TGATTCTATATAATTGATTC+TGG + chr7_3:57341273-57341292 Msa1111630:intron 20.0%
!! GTTTAATTGAAGCTAAAAAT+TGG - chr7_3:57341404-57341423 None:intergenic 20.0%
!! TCAATTAAACTCAATTCTAT+AGG + chr7_3:57341414-57341433 Msa1111630:intron 20.0%
!! ACAAAAAATACTCTCAAATA+CGG - chr7_3:57341570-57341589 None:intergenic 20.0%
!!! AAGACAAAAAAATGTTTTAG+GGG - chr7_3:57341694-57341713 None:intergenic 20.0%
!! TATTATGAAGAAAAACAGAT+TGG + chr7_3:57341736-57341755 Msa1111630:intron 20.0%
!! ATTATGAAGAAAAACAGATT+GGG + chr7_3:57341737-57341756 Msa1111630:intron 20.0%
!! TGAAATAAGACTTGATATTT+AGG + chr7_3:57341886-57341905 Msa1111630:intron 20.0%
!! GAAATAAGACTTGATATTTA+GGG + chr7_3:57341887-57341906 Msa1111630:intron 20.0%
!!! ACATAATTTTGTCTTCTAAA+GGG + chr7_3:57341910-57341929 Msa1111630:intron 20.0%
!!! AATATAGCAAGGTTTTAAAT+TGG + chr7_3:57342507-57342526 Msa1111630:intron 20.0%
!! AGATTATTTATTGATGTTGT+TGG + chr7_3:57342687-57342706 Msa1111630:intron 20.0%
!! TCTCATTAAATGATTTAGTA+AGG + chr7_3:57343618-57343637 Msa1111630:intron 20.0%
!!! AGTCTGAAATCATATAAAAA+AGG + chr7_3:57343873-57343892 Msa1111630:CDS 20.0%
!! AATTGTTTATTGTGATTCAA+AGG - chr7_3:57344165-57344184 None:intergenic 20.0%
!! AACAATTAATTGGACTTAAT+AGG + chr7_3:57344178-57344197 Msa1111630:intron 20.0%
!! CTAAATAGAGAAAATATAAG+TGG + chr7_3:57344263-57344282 Msa1111630:intron 20.0%
!! ACAATTAAACCAATGATAAT+TGG - chr7_3:57344577-57344596 None:intergenic 20.0%
!!! CATTTATTTTATGCCAATAA+GGG + chr7_3:57344628-57344647 Msa1111630:intron 20.0%
!!! ATTTATTTTATGCCAATAAG+GGG + chr7_3:57344629-57344648 Msa1111630:intron 20.0%
!! TTCAAAAAATCATTGTTTCA+TGG + chr7_3:57344658-57344677 Msa1111630:intron 20.0%
!! TAAAAGAAATCGTAAAAGTA+TGG + chr7_3:57344744-57344763 Msa1111630:intron 20.0%
!!! AAAAGAAATCGTAAAAGTAT+GGG + chr7_3:57344745-57344764 Msa1111630:intron 20.0%
!! GTGATCAAATATATTAGAAT+TGG + chr7_3:57344909-57344928 Msa1111630:intron 20.0%
!!! TCAACTATTTTGTAATTGAT+TGG + chr7_3:57345004-57345023 Msa1111630:intron 20.0%
!! TAATGAATTAGTGTTACAAA+CGG + chr7_3:57345500-57345519 Msa1111630:intron 20.0%
!!! TTTTGTTGTATAACTTTGTT+TGG + chr7_3:57345772-57345791 Msa1111630:intron 20.0%
!! ATGATATCAATAAACTGAAT+AGG - chr7_3:57345915-57345934 None:intergenic 20.0%
!! ATGTTTAACTGAACTTTATT+GGG - chr7_3:57345949-57345968 None:intergenic 20.0%
!! TATGTTTAACTGAACTTTAT+TGG - chr7_3:57345950-57345969 None:intergenic 20.0%
! TCAAAGTAAGAGAAAAACAA+TGG - chr7_3:57340674-57340693 None:intergenic 25.0%
!! TGAATAAAGTTAGATCCTTT+TGG - chr7_3:57340954-57340973 None:intergenic 25.0%
! TGCATTGAATTTGACAAAAA+TGG - chr7_3:57340997-57341016 None:intergenic 25.0%
!!! TTCACCTCTAAAATCAATTT+TGG + chr7_3:57341449-57341468 Msa1111630:intron 25.0%
! TTATGAAGAAAAACAGATTG+GGG + chr7_3:57341738-57341757 Msa1111630:intron 25.0%
!! GACATAATTTTGTCTTCTAA+AGG + chr7_3:57341909-57341928 Msa1111630:intron 25.0%
!! TTCTAAAGGGACTTATAATT+AGG + chr7_3:57341923-57341942 Msa1111630:intron 25.0%
! TAACAGTTTCTGCATTATTT+AGG - chr7_3:57342476-57342495 None:intergenic 25.0%
! CGAAAAGTTATGAATAAATG+TGG + chr7_3:57342569-57342588 Msa1111630:intron 25.0%
! ATTACGATTTATGCATGATA+AGG + chr7_3:57342862-57342881 Msa1111630:intron 25.0%
! ATCATATAAATATGGCATTG+TGG + chr7_3:57343026-57343045 Msa1111630:intron 25.0%
! TTGATATGCTACATATGATT+TGG - chr7_3:57343538-57343557 None:intergenic 25.0%
!!! CAATTTTGACTACCATAATA+TGG + chr7_3:57343555-57343574 Msa1111630:intron 25.0%
! GAACATTAAAGTGGATATTT+GGG - chr7_3:57343708-57343727 None:intergenic 25.0%
! TGAACATTAAAGTGGATATT+TGG - chr7_3:57343709-57343728 None:intergenic 25.0%
!!! GATTTCATTTTTGACAATCT+TGG - chr7_3:57344054-57344073 None:intergenic 25.0%
!!! GTAACTTTTAAGTTAAGATG+GGG - chr7_3:57344231-57344250 None:intergenic 25.0%
!!! CGTAACTTTTAAGTTAAGAT+GGG - chr7_3:57344232-57344251 None:intergenic 25.0%
!!! TCGTAACTTTTAAGTTAAGA+TGG - chr7_3:57344233-57344252 None:intergenic 25.0%
! GTAAAAATTGCATTTGAACT+CGG - chr7_3:57344538-57344557 None:intergenic 25.0%
!!! GCATTTATTTTATGCCAATA+AGG + chr7_3:57344627-57344646 Msa1111630:intron 25.0%
!!! TTTATTTTATGCCAATAAGG+GGG + chr7_3:57344630-57344649 Msa1111630:intron 25.0%
!!! ATGAAAGTGTTGCATATTTT+AGG + chr7_3:57344802-57344821 Msa1111630:intron 25.0%
!!! TGAAAGTGTTGCATATTTTA+GGG + chr7_3:57344803-57344822 Msa1111630:intron 25.0%
!! AGCTGATTTAAATTACTTGT+TGG + chr7_3:57345076-57345095 Msa1111630:intron 25.0%
!! GCTGATTTAAATTACTTGTT+GGG + chr7_3:57345077-57345096 Msa1111630:intron 25.0%
!! ATTTGACTTAAACAGTAAAC+AGG - chr7_3:57345456-57345475 None:intergenic 25.0%
! GTTGAACATTAAATGACATT+TGG + chr7_3:57345698-57345717 Msa1111630:intron 25.0%
!! AGACTGTCATAGTAAATTTT+TGG + chr7_3:57346101-57346120 Msa1111630:three_prime_UTR 25.0%
!! TTATGCATGAACTACATTTT+AGG + chr7_3:57346240-57346259 Msa1111630:three_prime_UTR 25.0%
! TTGTGAAATTTACTCTCTTA+TGG - chr7_3:57346335-57346354 None:intergenic 25.0%
AAGAATGAAATCAAACAGGT+TGG - chr7_3:57340622-57340641 None:intergenic 30.0%
AGTGAAGAATGAAATCAAAC+AGG - chr7_3:57340626-57340645 None:intergenic 30.0%
ACAATGGAATCAATGAAAGA+GGG - chr7_3:57340658-57340677 None:intergenic 30.0%
AACAATGGAATCAATGAAAG+AGG - chr7_3:57340659-57340678 None:intergenic 30.0%
TTGAGTAAAGGATGAAACTT+CGG - chr7_3:57340819-57340838 None:intergenic 30.0%
CACAGTTGAATTACACAAAA+TGG - chr7_3:57341230-57341249 None:intergenic 30.0%
AATTCAACTGTGTGTATGTT+TGG + chr7_3:57341238-57341257 Msa1111630:intron 30.0%
! TAAAAGTGAGTTGAAGGTAA+AGG + chr7_3:57341297-57341316 Msa1111630:intron 30.0%
AAAAATACTCTCAAATACGG+TGG - chr7_3:57341567-57341586 None:intergenic 30.0%
!!! CAAAAAAATGTTTTAGGGGA+GGG - chr7_3:57341690-57341709 None:intergenic 30.0%
!!! ACAAAAAAATGTTTTAGGGG+AGG - chr7_3:57341691-57341710 None:intergenic 30.0%
! TTTTTGTCTTTTCCCATGTT+AGG + chr7_3:57341704-57341723 Msa1111630:intron 30.0%
! TTTTGTCTTTTCCCATGTTA+GGG + chr7_3:57341705-57341724 Msa1111630:intron 30.0%
ATACAAAATTCCCCTAACAT+GGG - chr7_3:57341719-57341738 None:intergenic 30.0%
AATACAAAATTCCCCTAACA+TGG - chr7_3:57341720-57341739 None:intergenic 30.0%
TATGAAGAAAAACAGATTGG+GGG + chr7_3:57341739-57341758 Msa1111630:intron 30.0%
CTTTCAATAATGCTACTACT+AGG - chr7_3:57341844-57341863 None:intergenic 30.0%
GGACTTATAATTAGGAAGAT+AGG + chr7_3:57341931-57341950 Msa1111630:intron 30.0%
!! TGTTGTTGAATTTGCTAATG+TGG + chr7_3:57341978-57341997 Msa1111630:intron 30.0%
CTTCTTAGAATACACTTCAT+AGG - chr7_3:57342150-57342169 None:intergenic 30.0%
! CTATGAAGTGTATTCTAAGA+AGG + chr7_3:57342148-57342167 Msa1111630:CDS 30.0%
! TTTTATGTTGGTATACCCTA+TGG + chr7_3:57342380-57342399 Msa1111630:CDS 30.0%
TACCCTATGGTATGTATTTA+TGG + chr7_3:57342393-57342412 Msa1111630:intron 30.0%
AGCCATAAATACATACCATA+GGG - chr7_3:57342398-57342417 None:intergenic 30.0%
ATGTATTTATGGCTGTTGTA+TGG + chr7_3:57342404-57342423 Msa1111630:intron 30.0%
AGATGCATTTGAATATAGCA+AGG + chr7_3:57342496-57342515 Msa1111630:intron 30.0%
!!! AAGGTTTTAAATTGGAGTTG+TGG + chr7_3:57342515-57342534 Msa1111630:intron 30.0%
CTGCAATATCATTATTTGGA+AGG - chr7_3:57342626-57342645 None:intergenic 30.0%
TCAATAAATAATCTAGTCCG+TGG - chr7_3:57342681-57342700 None:intergenic 30.0%
TTGTCCTCAACCTATTAATA+GGG - chr7_3:57342789-57342808 None:intergenic 30.0%
ATTGTCCTCAACCTATTAAT+AGG - chr7_3:57342790-57342809 None:intergenic 30.0%
GCATATTTAAGTCCTACAAA+AGG - chr7_3:57342893-57342912 None:intergenic 30.0%
AGGACTTAAATATGCTGATA+AGG + chr7_3:57342898-57342917 Msa1111630:intron 30.0%
TGATGAAAGTTATCCTCTAA+TGG + chr7_3:57342937-57342956 Msa1111630:intron 30.0%
! GTCATTGATAACATTGACAA+GGG - chr7_3:57342973-57342992 None:intergenic 30.0%
CTTGTCAATGTTATCAATGA+CGG + chr7_3:57342972-57342991 Msa1111630:intron 30.0%
! TGATAAAGCATTCAATAAGC+CGG - chr7_3:57343581-57343600 None:intergenic 30.0%
GATATGACTATTATACTGAC+TGG + chr7_3:57343657-57343676 Msa1111630:intron 30.0%
ATTAAAGTGGATATTTGGGA+GGG - chr7_3:57343704-57343723 None:intergenic 30.0%
ACATCACATGAACATTAAAG+TGG - chr7_3:57343717-57343736 None:intergenic 30.0%
TAACAAACCTGCAAAGTAAT+AGG - chr7_3:57343751-57343770 None:intergenic 30.0%
TTCCTTTCCTTTATGATAAC+AGG + chr7_3:57343786-57343805 Msa1111630:CDS 30.0%
TTCCTGTTATCATAAAGGAA+AGG - chr7_3:57343791-57343810 None:intergenic 30.0%
AATGCTTCCTGTTATCATAA+AGG - chr7_3:57343796-57343815 None:intergenic 30.0%
GAGAGAAAACATTTAAATCC+AGG + chr7_3:57344095-57344114 Msa1111630:intron 30.0%
TGTTTATTGTGATTCAAAGG+TGG - chr7_3:57344162-57344181 None:intergenic 30.0%
!! TTAATGGGCTTCTATTTCAT+GGG - chr7_3:57344325-57344344 None:intergenic 30.0%
TGTAAATTACATACCCTTTC+CGG - chr7_3:57344352-57344371 None:intergenic 30.0%
! AAATCATATCTTGGTGTGAT+TGG - chr7_3:57344461-57344480 None:intergenic 30.0%
! TCACACCAAGATATGATTTT+TGG + chr7_3:57344462-57344481 Msa1111630:intron 30.0%
!!! ATTTTTGGTGTGCATAAGAT+TGG + chr7_3:57344477-57344496 Msa1111630:intron 30.0%
! ATTGGTCAATAGTATTGAAC+TGG + chr7_3:57344495-57344514 Msa1111630:intron 30.0%
TCAATGCATCCAATTATCAT+TGG + chr7_3:57344565-57344584 Msa1111630:intron 30.0%
TCATGGTCGAAATGATTTAT+TGG + chr7_3:57344675-57344694 Msa1111630:intron 30.0%
CATGGTCGAAATGATTTATT+GGG + chr7_3:57344676-57344695 Msa1111630:intron 30.0%
TCGAAATGATTTATTGGGTT+TGG + chr7_3:57344681-57344700 Msa1111630:intron 30.0%
AATTTAAATCAGCTATGCGA+TGG - chr7_3:57345070-57345089 None:intergenic 30.0%
TTGAATAGAAACCTAATGCT+AGG - chr7_3:57345663-57345682 None:intergenic 30.0%
TTAGAAGGTAAACCACAAAA+AGG + chr7_3:57345841-57345860 Msa1111630:CDS 30.0%
! TCAAAGTTTGAACCTTTTTG+TGG - chr7_3:57345856-57345875 None:intergenic 30.0%
CAAAAAGGTTCAAACTTTGA+AGG + chr7_3:57345856-57345875 Msa1111630:CDS 30.0%
AAAGTGTGTATGTTGAAAAG+AGG - chr7_3:57345985-57346004 None:intergenic 30.0%
! AAGCAATATCATGATTTTCC+AGG - chr7_3:57346190-57346209 None:intergenic 30.0%
GATGTTTCTCTTACCAAATA+AGG + chr7_3:57346404-57346423 Msa1111630:three_prime_UTR 30.0%
!!! CACTTTTTCACATCCTTATT+TGG - chr7_3:57346420-57346439 None:intergenic 30.0%
! ATAAGGATGTGAAAAAGTGT+AGG + chr7_3:57346421-57346440 Msa1111630:three_prime_UTR 30.0%
! CAGAGGAAGTTTGGAATAAT+CGG - chr7_3:57340585-57340604 None:intergenic 35.0%
!! AATCAAACAGGTTGGTTGTT+CGG - chr7_3:57340614-57340633 None:intergenic 35.0%
!! GAAGCCATTTAGGTTGAAAA+GGG - chr7_3:57340726-57340745 None:intergenic 35.0%
TAACACAGAAACTGAATCCA+TGG - chr7_3:57340760-57340779 None:intergenic 35.0%
!! GGGACCAAAATTGATTTTAG+AGG - chr7_3:57341456-57341475 None:intergenic 35.0%
!! AAAATCAATTTTGGTCCCTC+TGG + chr7_3:57341458-57341477 Msa1111630:intron 35.0%
! TTTGTCTTTTCCCATGTTAG+GGG + chr7_3:57341706-57341725 Msa1111630:intron 35.0%
!! AAGAGCTTTGAGAAAAAGGA+AGG - chr7_3:57341774-57341793 None:intergenic 35.0%
TATGTTTGGGAGTTTAGTAG+GGG - chr7_3:57341801-57341820 None:intergenic 35.0%
CTATGTTTGGGAGTTTAGTA+GGG - chr7_3:57341802-57341821 None:intergenic 35.0%
! ATGTGGATTGTGAACTGTAT+AGG + chr7_3:57341995-57342014 Msa1111630:intron 35.0%
TTGTGAACTGTATAGGATCA+TGG + chr7_3:57342002-57342021 Msa1111630:intron 35.0%
!! AACAAGCTTTGAAGCTACAA+GGG + chr7_3:57342111-57342130 Msa1111630:CDS 35.0%
AGTATCTTGCAAAACCACAA+TGG - chr7_3:57342174-57342193 None:intergenic 35.0%
TTCAGAACAGTTGAAGATAC+AGG + chr7_3:57342193-57342212 Msa1111630:CDS 35.0%
CAAATCATGTCTTGCCTTAT+CGG - chr7_3:57342219-57342238 None:intergenic 35.0%
! AAGACATGATTTGAGTGTTG+TGG + chr7_3:57342226-57342245 Msa1111630:CDS 35.0%
CAGCCATAAATACATACCAT+AGG - chr7_3:57342399-57342418 None:intergenic 35.0%
GAATAAATGTGGCTGAATTG+TGG + chr7_3:57342580-57342599 Msa1111630:intron 35.0%
TAGTCCGTGGTTTCAATTTA+CGG - chr7_3:57342668-57342687 None:intergenic 35.0%
!! TGTTGTTGGCTAAAGTTTTG+TGG + chr7_3:57342701-57342720 Msa1111630:intron 35.0%
GATTCTATACCGACACATTT+AGG + chr7_3:57342757-57342776 Msa1111630:intron 35.0%
TAGGCTAAGTCCCTATTAAT+AGG + chr7_3:57342776-57342795 Msa1111630:intron 35.0%
AAGTCCCTATTAATAGGTTG+AGG + chr7_3:57342782-57342801 Msa1111630:intron 35.0%
ACTTGATCATCTTCACATGT+TGG + chr7_3:57342815-57342834 Msa1111630:intron 35.0%
CTTGATCATCTTCACATGTT+GGG + chr7_3:57342816-57342835 Msa1111630:intron 35.0%
AAATCGTAATCCCCATTAGT+AGG - chr7_3:57342852-57342871 None:intergenic 35.0%
!!! GATAAGGATTAGCCTTTTGT+AGG + chr7_3:57342878-57342897 Msa1111630:intron 35.0%
AAAGTTATCCTCTAATGGAG+AGG + chr7_3:57342942-57342961 Msa1111630:intron 35.0%
! CGTCATTGATAACATTGACA+AGG - chr7_3:57342974-57342993 None:intergenic 35.0%
ATGCCTATATTATCTGCCAT+AGG - chr7_3:57343052-57343071 None:intergenic 35.0%
TATGGCAGATAATATAGGCA+TGG + chr7_3:57343051-57343070 Msa1111630:intron 35.0%
GTTGTTGACACAATCAATCA+TGG + chr7_3:57343073-57343092 Msa1111630:intron 35.0%
ATAATGCCATGTCAGCAATT+TGG + chr7_3:57343097-57343116 Msa1111630:intron 35.0%
ATCAGTCCTTACTCCTTATA+AGG - chr7_3:57343133-57343152 None:intergenic 35.0%
TTTGACTACCATAATATGGC+CGG + chr7_3:57343559-57343578 Msa1111630:intron 35.0%
CATTAAAGTGGATATTTGGG+AGG - chr7_3:57343705-57343724 None:intergenic 35.0%
TGATACTCCTATTACTTTGC+AGG + chr7_3:57343741-57343760 Msa1111630:intron 35.0%
!! ATAAGGTTTGGGGTGATTTT+AGG + chr7_3:57343822-57343841 Msa1111630:CDS 35.0%
CATACTATTGCAAACGTTAG+AGG - chr7_3:57344028-57344047 None:intergenic 35.0%
TGAAATCTCCTACCTAAGAT+TGG + chr7_3:57344067-57344086 Msa1111630:intron 35.0%
! TAGTAGGGTTTTCTAATTCC+TGG - chr7_3:57344116-57344135 None:intergenic 35.0%
ATGCAAACTCATAAGTCACA+AGG + chr7_3:57344205-57344224 Msa1111630:intron 35.0%
GAGAAAATATAAGTGGAGAC+CGG + chr7_3:57344270-57344289 Msa1111630:intron 35.0%
!! CTTAATGGGCTTCTATTTCA+TGG - chr7_3:57344326-57344345 None:intergenic 35.0%
ATAGAAGCCCATTAAGTAAC+CGG + chr7_3:57344330-57344349 Msa1111630:intron 35.0%
! GGAAAGGGTATGTAATTTAC+AGG + chr7_3:57344351-57344370 Msa1111630:intron 35.0%
TAGGATGACCTAGAATACTT+GGG - chr7_3:57344436-57344455 None:intergenic 35.0%
GCACACCAAAAATCATATCT+TGG - chr7_3:57344470-57344489 None:intergenic 35.0%
TTTGAAGAAAACCCCCTTAT+TGG - chr7_3:57344644-57344663 None:intergenic 35.0%
! GAAATCGTAAAAGTATGGGT+TGG + chr7_3:57344749-57344768 Msa1111630:intron 35.0%
AACAAGTGCAAGCTAGTAAT+TGG - chr7_3:57344780-57344799 None:intergenic 35.0%
!! AAGGCACATATAAGTATCGA+TGG - chr7_3:57344962-57344981 None:intergenic 35.0%
TGTTTAGAGAGCTGGATAAA+AGG - chr7_3:57344981-57345000 None:intergenic 35.0%
!! AGTGAAATAAGTTGATCCCT+GGG - chr7_3:57345256-57345275 None:intergenic 35.0%
CTTATTTCACTGCTTTGATC+AGG + chr7_3:57345265-57345284 Msa1111630:CDS 35.0%
TTGAGATTATCGGTAAAGGT+TGG - chr7_3:57345377-57345396 None:intergenic 35.0%
AAACATGAAAAAGCAGCAAG+TGG - chr7_3:57345400-57345419 None:intergenic 35.0%
TTCCTACTTGACATTGCATT+TGG + chr7_3:57345527-57345546 Msa1111630:intron 35.0%
! GGCATTTTATGTCTATAGAC+TGG + chr7_3:57345816-57345835 Msa1111630:CDS 35.0%
!!! GTCTATAGACTGGTTTTAGA+AGG + chr7_3:57345826-57345845 Msa1111630:CDS 35.0%
AGGAAACTAGTTCAGTGATA+AGG + chr7_3:57345885-57345904 Msa1111630:exon 35.0%
! TGCATGAACTACATTTTAGG+TGG + chr7_3:57346243-57346262 Msa1111630:three_prime_UTR 35.0%
!! GCATGAACTACATTTTAGGT+GGG + chr7_3:57346244-57346263 Msa1111630:three_prime_UTR 35.0%
TTAGGTGGGATATTATGAAC+TGG + chr7_3:57346258-57346277 Msa1111630:three_prime_UTR 35.0%
! AGGAAGTTTGGAATAATCGG+TGG - chr7_3:57340582-57340601 None:intergenic 40.0%
GAAAACGAGAGTTTGGGAAT+TGG - chr7_3:57340699-57340718 None:intergenic 40.0%
! TTCGCCCTTTTCAACCTAAA+TGG + chr7_3:57340719-57340738 Msa1111630:exon 40.0%
!! CGAAGCCATTTAGGTTGAAA+AGG - chr7_3:57340727-57340746 None:intergenic 40.0%
GAAACTCATCGAAGCCATTT+AGG - chr7_3:57340736-57340755 None:intergenic 40.0%
! AGAGTTTGAAAGTGGTGTTG+CGG - chr7_3:57340845-57340864 None:intergenic 40.0%
AGGAAGAGAGAGTTTGAAAG+TGG - chr7_3:57340853-57340872 None:intergenic 40.0%
CATGACTCTGTAAGTCCAAA+AGG + chr7_3:57340936-57340955 Msa1111630:intron 40.0%
! TCTGGCTAAAAGTGAGTTGA+AGG + chr7_3:57341291-57341310 Msa1111630:intron 40.0%
! GTTTTTCTGCAGCTCTGTTT+GGG + chr7_3:57341480-57341499 Msa1111630:intron 40.0%
!!! AATGTTTTAGGGGAGGGTTT+AGG - chr7_3:57341684-57341703 None:intergenic 40.0%
!! AGGGAAGAGCTTTGAGAAAA+AGG - chr7_3:57341778-57341797 None:intergenic 40.0%
GCTATGTTTGGGAGTTTAGT+AGG - chr7_3:57341803-57341822 None:intergenic 40.0%
TGCTACTACTAGGTTGTCTT+GGG - chr7_3:57341834-57341853 None:intergenic 40.0%
ATGCTACTACTAGGTTGTCT+TGG - chr7_3:57341835-57341854 None:intergenic 40.0%
ATAGGATCATGGTGAAGTTG+AGG + chr7_3:57342013-57342032 Msa1111630:intron 40.0%
!! GAATGATGTTAGTTCTGAGG+AGG + chr7_3:57342046-57342065 Msa1111630:CDS 40.0%
!! GAACAAGCTTTGAAGCTACA+AGG + chr7_3:57342110-57342129 Msa1111630:CDS 40.0%
!! ACAAGCTTTGAAGCTACAAG+GGG + chr7_3:57342112-57342131 Msa1111630:CDS 40.0%
! GTATTCTAAGAAGGCCATTG+TGG + chr7_3:57342157-57342176 Msa1111630:CDS 40.0%
TTTGCTGAGATCATCATCTG+GGG - chr7_3:57342342-57342361 None:intergenic 40.0%
CTTTGCTGAGATCATCATCT+GGG - chr7_3:57342343-57342362 None:intergenic 40.0%
ACTTTGCTGAGATCATCATC+TGG - chr7_3:57342344-57342363 None:intergenic 40.0%
GATGATCTCAGCAAAGTTTC+TGG + chr7_3:57342347-57342366 Msa1111630:CDS 40.0%
!! TCAGCAAAGTTTCTGGAGTT+CGG + chr7_3:57342354-57342373 Msa1111630:CDS 40.0%
GCGGCTGCAATATCATTATT+TGG - chr7_3:57342630-57342649 None:intergenic 40.0%
TCGACCGTAAATTGAAACCA+CGG + chr7_3:57342661-57342680 Msa1111630:intron 40.0%
!! TGTTGGCTAAAGTTTTGTGG+CGG + chr7_3:57342704-57342723 Msa1111630:intron 40.0%
!! GAGGTATTGCTCCTACTAAT+GGG + chr7_3:57342838-57342857 Msa1111630:intron 40.0%
! AGGTATTGCTCCTACTAATG+GGG + chr7_3:57342839-57342858 Msa1111630:intron 40.0%
AAATATGGCATTGTGGCCTA+TGG + chr7_3:57343033-57343052 Msa1111630:intron 40.0%
TGGCCTATGGCAGATAATAT+AGG + chr7_3:57343046-57343065 Msa1111630:intron 40.0%
ACCAGTCCTTATAAGGAGTA+AGG + chr7_3:57343124-57343143 Msa1111630:intron 40.0%
TCCTTACTCCTTATAAGGAC+TGG - chr7_3:57343128-57343147 None:intergenic 40.0%
TGATGTTGTGGGTGTCTTTA+TGG + chr7_3:57343149-57343168 Msa1111630:intron 40.0%
TGGGTGTCTTTATGGATGTT+GGG + chr7_3:57343157-57343176 Msa1111630:intron 40.0%
CGTTGAATTGTATGCGCTTT+CGG + chr7_3:57343223-57343242 Msa1111630:intron 40.0%
TCAATAAGCCGGCCATATTA+TGG - chr7_3:57343570-57343589 None:intergenic 40.0%
!! TGCAGGTTTGTTACTATCTG+CGG + chr7_3:57343758-57343777 Msa1111630:intron 40.0%
AGCATTGCAGCAATAAGGTT+TGG + chr7_3:57343810-57343829 Msa1111630:CDS 40.0%
GCATTGCAGCAATAAGGTTT+GGG + chr7_3:57343811-57343830 Msa1111630:CDS 40.0%
CATTGCAGCAATAAGGTTTG+GGG + chr7_3:57343812-57343831 Msa1111630:CDS 40.0%
!! GATTTTAGGTGGTGTGCTAT+TGG + chr7_3:57343836-57343855 Msa1111630:CDS 40.0%
AGCATATGATCTTACCTGTC+TGG - chr7_3:57343926-57343945 None:intergenic 40.0%
ATCTCCTACCTAAGATTGGA+AGG + chr7_3:57344071-57344090 Msa1111630:intron 40.0%
TCTCCTACCTAAGATTGGAA+GGG + chr7_3:57344072-57344091 Msa1111630:intron 40.0%
! GACTATCGTCCTCTATTTTC+CGG - chr7_3:57344292-57344311 None:intergenic 40.0%
ACCCTTTCCGGTTACTTAAT+GGG - chr7_3:57344340-57344359 None:intergenic 40.0%
TACCCTTTCCGGTTACTTAA+TGG - chr7_3:57344341-57344360 None:intergenic 40.0%
GTAGGATGACCTAGAATACT+TGG - chr7_3:57344437-57344456 None:intergenic 40.0%
! TATCTTGGTGTGATTGGTGT+AGG - chr7_3:57344455-57344474 None:intergenic 40.0%
! GGTCAATAGTATTGAACTGG+AGG + chr7_3:57344498-57344517 Msa1111630:intron 40.0%
! GTTGATGTTGTTTAGAGAGC+TGG - chr7_3:57344989-57345008 None:intergenic 40.0%
!!! CTCTTGTTTTCCTTTTCCCA+GGG + chr7_3:57345237-57345256 Msa1111630:intron 40.0%
!! ATAAGTTGATCCCTGGGAAA+AGG - chr7_3:57345250-57345269 None:intergenic 40.0%
!! CAGTGAAATAAGTTGATCCC+TGG - chr7_3:57345257-57345276 None:intergenic 40.0%
ATTATCGGTAAAGGTTGGCA+TGG - chr7_3:57345372-57345391 None:intergenic 40.0%
GTGGTTGAGATTATCGGTAA+AGG - chr7_3:57345381-57345400 None:intergenic 40.0%
CAGCAAGTGGTTGAGATTAT+CGG - chr7_3:57345387-57345406 None:intergenic 40.0%
GTCCAAATGCAATGTCAAGT+AGG - chr7_3:57345532-57345551 None:intergenic 40.0%
ACTTGACATTGCATTTGGAC+TGG + chr7_3:57345532-57345551 Msa1111630:intron 40.0%
CAGAAAACTCACCTAGCATT+AGG + chr7_3:57345649-57345668 Msa1111630:intron 40.0%
TATTCAACCTGCAGAAATGC+AGG + chr7_3:57345676-57345695 Msa1111630:intron 40.0%
! ACTTTGTTTGGCATTTGCAG+TGG + chr7_3:57345784-57345803 Msa1111630:intron 40.0%
! TCAAACTTTGAAGGTGAAGC+AGG + chr7_3:57345865-57345884 Msa1111630:CDS 40.0%
TTGCTGATGGTTAGGATTAG+TGG + chr7_3:57346143-57346162 Msa1111630:three_prime_UTR 40.0%
! TGGTTAGGATTAGTGGTTCA+TGG + chr7_3:57346150-57346169 Msa1111630:three_prime_UTR 40.0%
! GGTTAGGATTAGTGGTTCAT+GGG + chr7_3:57346151-57346170 Msa1111630:three_prime_UTR 40.0%
AGTGAAGACTGAAGAATGCA+AGG - chr7_3:57346312-57346331 None:intergenic 40.0%
TTTACATGCTTACTTGAGCC+TGG + chr7_3:57346355-57346374 Msa1111630:three_prime_UTR 40.0%
TTACATGCTTACTTGAGCCT+GGG + chr7_3:57346356-57346375 Msa1111630:three_prime_UTR 40.0%
! GTTAGTTACTTTACAACCCC+AGG - chr7_3:57346376-57346395 None:intergenic 40.0%
!! GGTTTTGTCACGTGTGTGTT+GGG - chr7_3:57340561-57340580 None:intergenic 45.0%
!!! TGGTTTTGTCACGTGTGTGT+TGG - chr7_3:57340562-57340581 None:intergenic 45.0%
CGGAAAATGCAGAGGAAGTT+TGG - chr7_3:57340594-57340613 None:intergenic 45.0%
TGGTTGTTCGGAAAATGCAG+AGG - chr7_3:57340602-57340621 None:intergenic 45.0%
GGCGAAGAAAACGAGAGTTT+GGG - chr7_3:57340705-57340724 None:intergenic 45.0%
GATGGGTGTGGTTGAGTTTA+GGG - chr7_3:57340785-57340804 None:intergenic 45.0%
AGATGGGTGTGGTTGAGTTT+AGG - chr7_3:57340786-57340805 None:intergenic 45.0%
CTTCGGAGAATGAGAGAGAT+GGG - chr7_3:57340802-57340821 None:intergenic 45.0%
ACTTCGGAGAATGAGAGAGA+TGG - chr7_3:57340803-57340822 None:intergenic 45.0%
GTGTTGCGGTGTTTGAGTAA+AGG - chr7_3:57340831-57340850 None:intergenic 45.0%
GGACTTACAGAGTCATGTTG+AGG - chr7_3:57340933-57340952 None:intergenic 45.0%
AGAGCTGCAGAAAAACCAGA+GGG - chr7_3:57341476-57341495 None:intergenic 45.0%
! GGTTTTTCTGCAGCTCTGTT+TGG + chr7_3:57341479-57341498 Msa1111630:intron 45.0%
TTTGGGAGTTTAGTAGGGGA+GGG - chr7_3:57341797-57341816 None:intergenic 45.0%
GGGAGATGAAGGCTATGTTT+GGG - chr7_3:57341814-57341833 None:intergenic 45.0%
TGGGAGATGAAGGCTATGTT+TGG - chr7_3:57341815-57341834 None:intergenic 45.0%
TAGGTTGTCTTGGGAGATGA+AGG - chr7_3:57341825-57341844 None:intergenic 45.0%
TGGTGAAGTTGAGGTAGAGA+AGG + chr7_3:57342022-57342041 Msa1111630:CDS 45.0%
GGTGAAGTTGAGGTAGAGAA+GGG + chr7_3:57342023-57342042 Msa1111630:CDS 45.0%
GTGAAGTTGAGGTAGAGAAG+GGG + chr7_3:57342024-57342043 Msa1111630:CDS 45.0%
!! GGGGAATGATGTTAGTTCTG+AGG + chr7_3:57342043-57342062 Msa1111630:CDS 45.0%
!! TAGTTCTGAGGAGGAATCAC+AGG + chr7_3:57342055-57342074 Msa1111630:CDS 45.0%
!! GCAGGCTTTGGATACATTCA+AGG + chr7_3:57342088-57342107 Msa1111630:CDS 45.0%
GTTGAAGATACAGGCCGATA+AGG + chr7_3:57342202-57342221 Msa1111630:CDS 45.0%
! TGATTTGAGTGTTGTGGCGA+AGG + chr7_3:57342232-57342251 Msa1111630:CDS 45.0%
GCGAAGGAAATCACTGAAGA+AGG + chr7_3:57342248-57342267 Msa1111630:CDS 45.0%
TGAGAATTCACCTGAGGTGA+AGG + chr7_3:57342295-57342314 Msa1111630:CDS 45.0%
ACCTGAGGTGAAGGAAATTG+TGG + chr7_3:57342304-57342323 Msa1111630:CDS 45.0%
TCCACAATTTCCTTCACCTC+AGG - chr7_3:57342308-57342327 None:intergenic 45.0%
!! CAGCAAAGTTTCTGGAGTTC+GGG + chr7_3:57342355-57342374 Msa1111630:CDS 45.0%
! GGAGTTCGGGACTTTTATGT+TGG + chr7_3:57342368-57342387 Msa1111630:CDS 45.0%
GCTGAATTGTGGTTACGATG+CGG + chr7_3:57342591-57342610 Msa1111630:intron 45.0%
GGGACTTAGCCTAAATGTGT+CGG - chr7_3:57342769-57342788 None:intergenic 45.0%
GATCATCTTCACATGTTGGG+AGG + chr7_3:57342819-57342838 Msa1111630:intron 45.0%
!! GGAGGTATTGCTCCTACTAA+TGG + chr7_3:57342837-57342856 Msa1111630:intron 45.0%
!! CAATGACGGACGACAGATTA+TGG + chr7_3:57342986-57343005 Msa1111630:intron 45.0%
GTGTTGCCAAATTGCTGACA+TGG - chr7_3:57343106-57343125 None:intergenic 45.0%
TGGCAACACCAGTCCTTATA+AGG + chr7_3:57343117-57343136 Msa1111630:intron 45.0%
AGGAGTAAGGACTGATGTTG+TGG + chr7_3:57343137-57343156 Msa1111630:intron 45.0%
GGAGTAAGGACTGATGTTGT+GGG + chr7_3:57343138-57343157 Msa1111630:intron 45.0%
GTGGGTGTCTTTATGGATGT+TGG + chr7_3:57343156-57343175 Msa1111630:intron 45.0%
GATGTTGGGCTGATGTAACA+GGG + chr7_3:57343171-57343190 Msa1111630:intron 45.0%
!! GCAGGTTTGTTACTATCTGC+GGG + chr7_3:57343759-57343778 Msa1111630:intron 45.0%
!! CAGGAAGCATTGCAGCAATA+AGG + chr7_3:57343805-57343824 Msa1111630:CDS 45.0%
!! AGGTTTGGGGTGATTTTAGG+TGG + chr7_3:57343825-57343844 Msa1111630:CDS 45.0%
CCCTTCAAAGCAAGAGAAGA+GGG - chr7_3:57343903-57343922 None:intergenic 45.0%
! CCCTCTTCTCTTGCTTTGAA+GGG + chr7_3:57343900-57343919 Msa1111630:CDS 45.0%
CTCCTACCTAAGATTGGAAG+GGG + chr7_3:57344073-57344092 Msa1111630:intron 45.0%
TTCTCTCCCCTTCCAATCTT+AGG - chr7_3:57344082-57344101 None:intergenic 45.0%
AAGTGGAGACCGGAAAATAG+AGG + chr7_3:57344280-57344299 Msa1111630:intron 45.0%
CTTCTATTTCATGGGACCGT+GGG - chr7_3:57344317-57344336 None:intergenic 45.0%
AGCCCATTAAGTAACCGGAA+AGG + chr7_3:57344335-57344354 Msa1111630:intron 45.0%
GCCCATTAAGTAACCGGAAA+GGG + chr7_3:57344336-57344355 Msa1111630:intron 45.0%
ACCTTTACTGCAGGTCTAGT+GGG - chr7_3:57344380-57344399 None:intergenic 45.0%
! TAGACCTGCAGTAAAGGTGT+GGG + chr7_3:57344382-57344401 Msa1111630:intron 45.0%
ACCTAGAATACTTGGGCGAT+TGG - chr7_3:57344429-57344448 None:intergenic 45.0%
CTGCGTGAGATCAGCATATT+AGG + chr7_3:57345127-57345146 Msa1111630:CDS 45.0%
!!! GCTCTTGTTTTCCTTTTCCC+AGG + chr7_3:57345236-57345255 Msa1111630:intron 45.0%
TGTTCAACCTGCATTTCTGC+AGG - chr7_3:57345686-57345705 None:intergenic 45.0%
AAGACTCGTTGCTGATGGTT+AGG + chr7_3:57346135-57346154 Msa1111630:three_prime_UTR 45.0%
! TAGGATTAGTGGTTCATGGG+TGG + chr7_3:57346154-57346173 Msa1111630:three_prime_UTR 45.0%
TACATGCTTACTTGAGCCTG+GGG + chr7_3:57346357-57346376 Msa1111630:three_prime_UTR 45.0%
!!! TATTTATATGATAAATTTTT+TGG - chr7_3:57343018-57343037 None:intergenic 5.0%
!! AAAAATTTATCATATAAATA+TGG + chr7_3:57343018-57343037 Msa1111630:intron 5.0%
!!! ATTTTGTTTTTATATAATAT+TGG + chr7_3:57344832-57344851 Msa1111630:intron 5.0%
GGGCGAAGAAAACGAGAGTT+TGG - chr7_3:57340706-57340725 None:intergenic 50.0%
GGCTTCGATGAGTTTCACCA+TGG + chr7_3:57340740-57340759 Msa1111630:CDS 50.0%
GAGAATGAGAGAGATGGGTG+TGG - chr7_3:57340797-57340816 None:intergenic 50.0%
! CGTTGATTGAGGGCATAACG+AGG - chr7_3:57340873-57340892 None:intergenic 50.0%
!! CGGTTTGCTGCGTTGATTGA+GGG - chr7_3:57340883-57340902 None:intergenic 50.0%
!! ACGGTTTGCTGCGTTGATTG+AGG - chr7_3:57340884-57340903 None:intergenic 50.0%
GCAGCGAAAACGAGGGTTAA+CGG - chr7_3:57340903-57340922 None:intergenic 50.0%
CAGAGCTGCAGAAAAACCAG+AGG - chr7_3:57341477-57341496 None:intergenic 50.0%
TGCAGCTCTGTTTGGGAGTT+TGG + chr7_3:57341487-57341506 Msa1111630:intron 50.0%
AGCTCTGTTTGGGAGTTTGG+AGG + chr7_3:57341490-57341509 Msa1111630:intron 50.0%
GCTCTGTTTGGGAGTTTGGA+GGG + chr7_3:57341491-57341510 Msa1111630:intron 50.0%
CTCTGTTTGGGAGTTTGGAG+GGG + chr7_3:57341492-57341511 Msa1111630:intron 50.0%
GTTTGGGAGTTTAGTAGGGG+AGG - chr7_3:57341798-57341817 None:intergenic 50.0%
AGGAGGAATCACAGGAAGCA+TGG + chr7_3:57342063-57342082 Msa1111630:CDS 50.0%
! ATCACAGGAAGCATGGAAGC+AGG + chr7_3:57342070-57342089 Msa1111630:CDS 50.0%
TGCTGCTGAGAATTCACCTG+AGG + chr7_3:57342289-57342308 Msa1111630:CDS 50.0%
ACGGTCGATGACAGCAATTG+CGG - chr7_3:57342649-57342668 None:intergenic 50.0%
!! TGGCTAAAGTTTTGTGGCGG+CGG + chr7_3:57342707-57342726 Msa1111630:intron 50.0%
GGGCTTTACCTCTCCATTAG+AGG - chr7_3:57342953-57342972 None:intergenic 50.0%
GGATGTTGGGCTGATGTAAC+AGG + chr7_3:57343170-57343189 Msa1111630:intron 50.0%
!! GGTTTGTTACTATCTGCGGG+TGG + chr7_3:57343762-57343781 Msa1111630:intron 50.0%
GCCCTCTTCTCTTGCTTTGA+AGG + chr7_3:57343899-57343918 Msa1111630:CDS 50.0%
GCCCTTCAAAGCAAGAGAAG+AGG - chr7_3:57343904-57343923 None:intergenic 50.0%
CTCCCCTTCCAATCTTAGGT+AGG - chr7_3:57344078-57344097 None:intergenic 50.0%
GCTTCTATTTCATGGGACCG+TGG - chr7_3:57344318-57344337 None:intergenic 50.0%
ACCCACTAGACCTGCAGTAA+AGG + chr7_3:57344376-57344395 Msa1111630:intron 50.0%
CACCTTTACTGCAGGTCTAG+TGG - chr7_3:57344381-57344400 None:intergenic 50.0%
CTAGACCTGCAGTAAAGGTG+TGG + chr7_3:57344381-57344400 Msa1111630:intron 50.0%
ATTGGCAGGCTTCTGCAATC+AGG - chr7_3:57344411-57344430 None:intergenic 50.0%
AGAATACTTGGGCGATTGGC+AGG - chr7_3:57344425-57344444 None:intergenic 50.0%
GCCAATCGCCCAAGTATTCT+AGG + chr7_3:57344425-57344444 Msa1111630:intron 50.0%
GTTTGGCATTTGCAGTGGTG+CGG + chr7_3:57345789-57345808 Msa1111630:intron 50.0%
TCGTCAAGACTCGTTGCTGA+TGG + chr7_3:57346130-57346149 Msa1111630:three_prime_UTR 50.0%
ATGGGTGGAAAAATCGAGCC+TGG + chr7_3:57346169-57346188 Msa1111630:three_prime_UTR 50.0%
CGTAGCAGCAGCGAAAACGA+GGG - chr7_3:57340910-57340929 None:intergenic 55.0%
GGAGTTTGGAGGGGAGTAGA+GGG + chr7_3:57341501-57341520 Msa1111630:intron 55.0%
! GGAAGCATGGAAGCAGGCTT+TGG + chr7_3:57342076-57342095 Msa1111630:CDS 55.0%
GCTGAGATCATCATCTGGGG+AGG - chr7_3:57342339-57342358 None:intergenic 55.0%
GGCTGATGTAACAGGGCTCA+TGG + chr7_3:57343178-57343197 Msa1111630:intron 55.0%
!! CTTGCTTTGAAGGGCCAGAC+AGG + chr7_3:57343909-57343928 Msa1111630:CDS 55.0%
AGAGGACGATAGTCAGCCCA+CGG + chr7_3:57344298-57344317 Msa1111630:intron 55.0%
GATGCCCACACCTTTACTGC+AGG - chr7_3:57344389-57344408 None:intergenic 55.0%
GTTGGGCTTGCAGCTATAGC+AGG + chr7_3:57345094-57345113 Msa1111630:intron 55.0%
CATTTGCAGTGGTGCGGTAG+CGG + chr7_3:57345795-57345814 Msa1111630:intron 55.0%
GCGTAGCAGCAGCGAAAACG+AGG - chr7_3:57340911-57340930 None:intergenic 60.0%
GGGAGTTTGGAGGGGAGTAG+AGG + chr7_3:57341500-57341519 Msa1111630:intron 60.0%
TGGAGGGGAGTAGAGGGCTT+TGG + chr7_3:57341507-57341526 Msa1111630:intron 60.0%
GGAGGGGAGTAGAGGGCTTT+GGG + chr7_3:57341508-57341527 Msa1111630:intron 60.0%
GAGGGGAGTAGAGGGCTTTG+GGG + chr7_3:57341509-57341528 Msa1111630:intron 60.0%
! AGGGGAGTAGAGGGCTTTGG+GGG + chr7_3:57341510-57341529 Msa1111630:intron 60.0%
!! GAGTAGAGGGCTTTGGGGGA+GGG + chr7_3:57341514-57341533 Msa1111630:intron 60.0%
!! AGTAGAGGGCTTTGGGGGAG+GGG + chr7_3:57341515-57341534 Msa1111630:intron 60.0%
!! GGAGTAGAGGGCTTTGGGGG+AGG + chr7_3:57341513-57341532 Msa1111630:intron 65.0%
!! GCTTTGGGGGAGGGGAAGAG+AGG + chr7_3:57341523-57341542 Msa1111630:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 57340557 57346503 57340557 ID=Msa1111630;Name=Msa1111630
chr7_3 mRNA 57340557 57346503 57340557 ID=Msa1111630-mRNA-1;Parent=Msa1111630;Name=Msa1111630-mRNA-1;_AED=0.02;_eAED=0.02;_QI=181|1|1|1|0.83|0.71|7|470|308
chr7_3 exon 57340557 57340944 57340557 ID=Msa1111630-mRNA-1:exon:12316;Parent=Msa1111630-mRNA-1
chr7_3 exon 57342017 57342401 57342017 ID=Msa1111630-mRNA-1:exon:12317;Parent=Msa1111630-mRNA-1
chr7_3 exon 57343763 57343930 57343763 ID=Msa1111630-mRNA-1:exon:12318;Parent=Msa1111630-mRNA-1
chr7_3 exon 57345107 57345153 57345107 ID=Msa1111630-mRNA-1:exon:12319;Parent=Msa1111630-mRNA-1
chr7_3 exon 57345258 57345286 57345258 ID=Msa1111630-mRNA-1:exon:12320;Parent=Msa1111630-mRNA-1
chr7_3 exon 57345804 57345906 57345804 ID=Msa1111630-mRNA-1:exon:12321;Parent=Msa1111630-mRNA-1
chr7_3 exon 57346046 57346503 57346046 ID=Msa1111630-mRNA-1:exon:12322;Parent=Msa1111630-mRNA-1
chr7_3 five_prime_UTR 57340557 57340737 57340557 ID=Msa1111630-mRNA-1:five_prime_utr;Parent=Msa1111630-mRNA-1
chr7_3 CDS 57340738 57340944 57340738 ID=Msa1111630-mRNA-1:cds;Parent=Msa1111630-mRNA-1
chr7_3 CDS 57342017 57342401 57342017 ID=Msa1111630-mRNA-1:cds;Parent=Msa1111630-mRNA-1
chr7_3 CDS 57343763 57343930 57343763 ID=Msa1111630-mRNA-1:cds;Parent=Msa1111630-mRNA-1
chr7_3 CDS 57345107 57345153 57345107 ID=Msa1111630-mRNA-1:cds;Parent=Msa1111630-mRNA-1
chr7_3 CDS 57345258 57345286 57345258 ID=Msa1111630-mRNA-1:cds;Parent=Msa1111630-mRNA-1
chr7_3 CDS 57345804 57345894 57345804 ID=Msa1111630-mRNA-1:cds;Parent=Msa1111630-mRNA-1
chr7_3 three_prime_UTR 57345895 57345906 57345895 ID=Msa1111630-mRNA-1:three_prime_utr;Parent=Msa1111630-mRNA-1
chr7_3 three_prime_UTR 57346046 57346503 57346046 ID=Msa1111630-mRNA-1:three_prime_utr;Parent=Msa1111630-mRNA-1
Gene Sequence

>Msa1111630

ATGGCTTCGATGAGTTTCACCATGGATTCAGTTTCTGTGTTAAACCCTAAACTCAACCACACCCATCTCTCTCATTCTCCGAAGTTTCATCCTTTACTCAAACACCGCAACACCACTTTCAAACTCTCTCTTCCTCGTTATGCCCTCAATCAACGCAGCAAACCGTTAACCCTCGTTTTCGCTGCTGCTACGCCTCAACATGACTCTGATCATGGTGAAGTTGAGGTAGAGAAGGGGAATGATGTTAGTTCTGAGGAGGAATCACAGGAAGCATGGAAGCAGGCTTTGGATACATTCAAGGAACAAGCTTTGAAGCTACAAGGGGTTTCTCAAGAAGCCTATGAAGTGTATTCTAAGAAGGCCATTGTGGTTTTGCAAGATACTTCAGAACAGTTGAAGATACAGGCCGATAAGGCAAGACATGATTTGAGTGTTGTGGCGAAGGAAATCACTGAAGAAGGAAAAGAGTATTTCTCTTCTGCTGCTGAGAATTCACCTGAGGTGAAGGAAATTGTGGAAACTTTTACCTCCCCAGATGATGATCTCAGCAAAGTTTCTGGAGTTCGGGACTTTTATGTTGGTATACCCTATGGTTTGTTACTATCTGCGGGTGGCTTCCTTTCCTTTATGATAACAGGAAGCATTGCAGCAATAAGGTTTGGGGTGATTTTAGGTGGTGTGCTATTGGCTTTAAGCATTTCAAGTCTGAAATCATATAAAAAAGGACAGCCCTCTTCTCTTGCTTTGAAGGGCCAGACAGCTATAGCAGGTATCTTGTTTCTGCGTGAGATCAGCATATTAGGCAGAGGATCAACTTATTTCACTGCTTTGATCAGTGGTGCGGTAGCGGCATTTTATGTCTATAGACTGGTTTTAGAAGGTAAACCACAAAAAGGTTCAAACTTTGAAGGTGAAGCAGGAAACTAG

Protein sequence

>Msa1111630

MASMSFTMDSVSVLNPKLNHTHLSHSPKFHPLLKHRNTTFKLSLPRYALNQRSKPLTLVFAAATPQHDSDHGEVEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYKKGQPSSLALKGQTAIAGILFLREISILGRGSTYFTALISGAVAAFYVYRLVLEGKPQKGSNFEGEAGN*