AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1167170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167170 MtrunA17_Chr7g0244941 97.419 310 6 1 1 308 1 310 0.0 613
Msa1167170 MtrunA17_Chr7g0257051 32.184 174 106 2 127 296 54 219 8.23e-20 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1167170 AT2G38550.1 46.789 327 138 11 4 303 2 319 2.48e-80 247
Msa1167170 AT3G57280.1 28.931 159 102 3 146 296 57 212 5.71e-15 73.2

Find 107 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGAAATTTACTCTCTTA+TGG 0.180959 7_4:-59500317 None:intergenic
GATGGGTGTGGTTGAGTTTA+GGG 0.212767 7_4:-59495023 None:intergenic
GATGATCTCAGCAAAGTTTC+TGG 0.226891 7_4:+59496589 Msa1167170:CDS
AGATGGGTGTGGTTGAGTTT+AGG 0.238483 7_4:-59495024 None:intergenic
CAAATCATGTCTTGCCTTAT+CGG 0.253536 7_4:-59496458 None:intergenic
TTCCTTTCCTTTATGATAAC+AGG 0.269414 7_4:+59497771 Msa1167170:CDS
CGGAAAATGCAGAGGAAGTT+TGG 0.270047 7_4:-59494832 None:intergenic
CTGCGTGAGATCAGCATATT+AGG 0.305459 7_4:+59499112 Msa1167170:CDS
GATGTTTCTCTTACCAAATA+AGG 0.308050 7_4:+59500389 Msa1167170:three_prime_UTR
CAGGAAGCATTGCAGCAATA+AGG 0.309359 7_4:+59497790 Msa1167170:CDS
GGGCGAAGAAAACGAGAGTT+TGG 0.320704 7_4:-59494944 None:intergenic
GCCCTCTTCTCTTGCTTTGA+AGG 0.322787 7_4:+59497884 Msa1167170:CDS
TTGCTGATGGTTAGGATTAG+TGG 0.332050 7_4:+59500128 Msa1167170:three_prime_UTR
GCATTGCAGCAATAAGGTTT+GGG 0.336448 7_4:+59497796 Msa1167170:CDS
TTAGAAGGTAAACCACAAAA+AGG 0.338660 7_4:+59499826 Msa1167170:CDS
GAAACTCATCGAAGCCATTT+AGG 0.344874 7_4:-59494974 None:intergenic
CTTCTTAGAATACACTTCAT+AGG 0.347106 7_4:-59496389 None:intergenic
CAGCAAAGTTTCTGGAGTTC+GGG 0.348326 7_4:+59496597 Msa1167170:CDS
TCAGCAAAGTTTCTGGAGTT+CGG 0.355747 7_4:+59496596 Msa1167170:CDS
GAAAACGAGAGTTTGGGAAT+TGG 0.366535 7_4:-59494937 None:intergenic
AGCATTGCAGCAATAAGGTT+TGG 0.368282 7_4:+59497795 Msa1167170:CDS
AATCAAACAGGTTGGTTGTT+CGG 0.378634 7_4:-59494852 None:intergenic
CGAAGCCATTTAGGTTGAAA+AGG 0.389526 7_4:-59494965 None:intergenic
AATGCTTCCTGTTATCATAA+AGG 0.390887 7_4:-59497778 None:intergenic
CCCTCTTCTCTTGCTTTGAA+GGG 0.393105 7_4:+59497885 Msa1167170:CDS
CTTATTTCACTGCTTTGATC+AGG 0.394428 7_4:+59499250 Msa1167170:CDS
AACAATGGAATCAATGAAAG+AGG 0.408728 7_4:-59494897 None:intergenic
CGGTTTGCTGCGTTGATTGA+GGG 0.408744 7_4:-59495121 None:intergenic
GGAAGCATGGAAGCAGGCTT+TGG 0.413475 7_4:+59496318 Msa1167170:CDS
TTTACATGCTTACTTGAGCC+TGG 0.419544 7_4:+59500340 Msa1167170:three_prime_UTR
TGGTTAGGATTAGTGGTTCA+TGG 0.420233 7_4:+59500135 Msa1167170:three_prime_UTR
CAGAGGAAGTTTGGAATAAT+CGG 0.424723 7_4:-59494823 None:intergenic
AAGACTCGTTGCTGATGGTT+AGG 0.426716 7_4:+59500120 Msa1167170:three_prime_UTR
ACTTTGCTGAGATCATCATC+TGG 0.441046 7_4:-59496583 None:intergenic
TCCACAATTTCCTTCACCTC+AGG 0.451532 7_4:-59496547 None:intergenic
GCAGCGAAAACGAGGGTTAA+CGG 0.453399 7_4:-59495141 None:intergenic
AGCATATGATCTTACCTGTC+TGG 0.456066 7_4:-59497908 None:intergenic
CATTTGCAGTGGTGCGGTAG+CGG 0.456458 7_4:+59499780 Msa1167170:intron
TGCAGGTTTGTTACTATCTG+CGG 0.463565 7_4:+59497743 Msa1167170:intron
GCAGGTTTGTTACTATCTGC+GGG 0.468290 7_4:+59497744 Msa1167170:intron
TCAAACTTTGAAGGTGAAGC+AGG 0.469674 7_4:+59499850 Msa1167170:CDS
GTTGGGCTTGCAGCTATAGC+AGG 0.473435 7_4:+59499079 Msa1167170:intron
GGTGAAGTTGAGGTAGAGAA+GGG 0.479329 7_4:+59496265 Msa1167170:CDS
AGTGAAGAATGAAATCAAAC+AGG 0.484400 7_4:-59494864 None:intergenic
GGTTAGGATTAGTGGTTCAT+GGG 0.488878 7_4:+59500136 Msa1167170:three_prime_UTR
TTAGGTGGGATATTATGAAC+TGG 0.491232 7_4:+59500243 Msa1167170:three_prime_UTR
TGGTGAAGTTGAGGTAGAGA+AGG 0.492662 7_4:+59496264 Msa1167170:CDS
GTTGAAGATACAGGCCGATA+AGG 0.495852 7_4:+59496444 Msa1167170:CDS
AGGAAGAGAGAGTTTGAAAG+TGG 0.502707 7_4:-59495091 None:intergenic
GCAGGCTTTGGATACATTCA+AGG 0.503712 7_4:+59496330 Msa1167170:CDS
CTTGCTTTGAAGGGCCAGAC+AGG 0.507466 7_4:+59497894 Msa1167170:CDS
GGCGAAGAAAACGAGAGTTT+GGG 0.510115 7_4:-59494943 None:intergenic
TTCAGAACAGTTGAAGATAC+AGG 0.510496 7_4:+59496435 Msa1167170:CDS
CTATGAAGTGTATTCTAAGA+AGG 0.512585 7_4:+59496390 Msa1167170:CDS
GAAGCCATTTAGGTTGAAAA+GGG 0.513339 7_4:-59494964 None:intergenic
TTACATGCTTACTTGAGCCT+GGG 0.514785 7_4:+59500341 Msa1167170:three_prime_UTR
AGGAAACTAGTTCAGTGATA+AGG 0.517640 7_4:+59499870 Msa1167170:exon
GCGAAGGAAATCACTGAAGA+AGG 0.518243 7_4:+59496490 Msa1167170:CDS
GAACAAGCTTTGAAGCTACA+AGG 0.523582 7_4:+59496352 Msa1167170:CDS
ACGGTTTGCTGCGTTGATTG+AGG 0.525103 7_4:-59495122 None:intergenic
ATCACAGGAAGCATGGAAGC+AGG 0.525285 7_4:+59496312 Msa1167170:CDS
ACCTGAGGTGAAGGAAATTG+TGG 0.531778 7_4:+59496546 Msa1167170:CDS
CCCTTCAAAGCAAGAGAAGA+GGG 0.533399 7_4:-59497885 None:intergenic
CTTTGCTGAGATCATCATCT+GGG 0.538560 7_4:-59496582 None:intergenic
GTTAGTTACTTTACAACCCC+AGG 0.543512 7_4:-59500358 None:intergenic
AGGAGGAATCACAGGAAGCA+TGG 0.543731 7_4:+59496305 Msa1167170:CDS
TGATTTGAGTGTTGTGGCGA+AGG 0.544539 7_4:+59496474 Msa1167170:CDS
CTTCGGAGAATGAGAGAGAT+GGG 0.547043 7_4:-59495040 None:intergenic
TGAGAATTCACCTGAGGTGA+AGG 0.548278 7_4:+59496537 Msa1167170:CDS
TAGGATTAGTGGTTCATGGG+TGG 0.549493 7_4:+59500139 Msa1167170:three_prime_UTR
TCGTCAAGACTCGTTGCTGA+TGG 0.551132 7_4:+59500115 Msa1167170:three_prime_UTR
GTGTTGCGGTGTTTGAGTAA+AGG 0.557167 7_4:-59495069 None:intergenic
ACTTCGGAGAATGAGAGAGA+TGG 0.559423 7_4:-59495041 None:intergenic
TAACACAGAAACTGAATCCA+TGG 0.560337 7_4:-59494998 None:intergenic
TACATGCTTACTTGAGCCTG+GGG 0.561937 7_4:+59500342 Msa1167170:three_prime_UTR
TAGTTCTGAGGAGGAATCAC+AGG 0.564462 7_4:+59496297 Msa1167170:CDS
GCGTAGCAGCAGCGAAAACG+AGG 0.568145 7_4:-59495149 None:intergenic
TTGAGTAAAGGATGAAACTT+CGG 0.573545 7_4:-59495057 None:intergenic
AAGAATGAAATCAAACAGGT+TGG 0.573943 7_4:-59494860 None:intergenic
TTGTGAACTGTATAGGATCA+TGG 0.575738 7_4:+59496244 Msa1167170:intron
GGGGAATGATGTTAGTTCTG+AGG 0.580091 7_4:+59496285 Msa1167170:CDS
AACAAGCTTTGAAGCTACAA+GGG 0.592755 7_4:+59496353 Msa1167170:CDS
CATTGCAGCAATAAGGTTTG+GGG 0.597894 7_4:+59497797 Msa1167170:CDS
GCCCTTCAAAGCAAGAGAAG+AGG 0.598127 7_4:-59497886 None:intergenic
GGACTTACAGAGTCATGTTG+AGG 0.601334 7_4:-59495171 None:intergenic
AAGACATGATTTGAGTGTTG+TGG 0.608087 7_4:+59496468 Msa1167170:CDS
ATAGGATCATGGTGAAGTTG+AGG 0.610635 7_4:+59496255 Msa1167170:intron
AGTGAAGACTGAAGAATGCA+AGG 0.611193 7_4:-59500294 None:intergenic
ACAATGGAATCAATGAAAGA+GGG 0.615187 7_4:-59494896 None:intergenic
AGGAAGTTTGGAATAATCGG+TGG 0.620484 7_4:-59494820 None:intergenic
TTCCTGTTATCATAAAGGAA+AGG 0.622707 7_4:-59497773 None:intergenic
GGCTTCGATGAGTTTCACCA+TGG 0.627621 7_4:+59494981 Msa1167170:CDS
GTGAAGTTGAGGTAGAGAAG+GGG 0.628557 7_4:+59496266 Msa1167170:CDS
GAATGATGTTAGTTCTGAGG+AGG 0.633496 7_4:+59496288 Msa1167170:CDS
ACAAGCTTTGAAGCTACAAG+GGG 0.644302 7_4:+59496354 Msa1167170:CDS
GTATTCTAAGAAGGCCATTG+TGG 0.645713 7_4:+59496399 Msa1167170:CDS
TGCTGCTGAGAATTCACCTG+AGG 0.654229 7_4:+59496531 Msa1167170:CDS
GAGAATGAGAGAGATGGGTG+TGG 0.656406 7_4:-59495035 None:intergenic
GCTGAGATCATCATCTGGGG+AGG 0.657948 7_4:-59496578 None:intergenic
TGGTTGTTCGGAAAATGCAG+AGG 0.658234 7_4:-59494840 None:intergenic
GGTTTGTTACTATCTGCGGG+TGG 0.661424 7_4:+59497747 Msa1167170:intron
GTTTGGCATTTGCAGTGGTG+CGG 0.667652 7_4:+59499774 Msa1167170:intron
AGTATCTTGCAAAACCACAA+TGG 0.670863 7_4:-59496413 None:intergenic
CGTTGATTGAGGGCATAACG+AGG 0.686365 7_4:-59495111 None:intergenic
AGAGTTTGAAAGTGGTGTTG+CGG 0.690634 7_4:-59495083 None:intergenic
TTTGCTGAGATCATCATCTG+GGG 0.696144 7_4:-59496581 None:intergenic
CGTAGCAGCAGCGAAAACGA+GGG 0.710585 7_4:-59495148 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATTATAAAAATATTGAA+AGG + chr7_4:59495886-59495905 Msa1167170:intron 10.0%
!!! ATGGTTAATAAATTTTAAAT+CGG + chr7_4:59496665-59496684 Msa1167170:intron 10.0%
!!! TTTTTTTCTTAATTCTAAAA+AGG + chr7_4:59497957-59497976 Msa1167170:intron 10.0%
!!! TTTTTTCTTAATTCTAAAAA+GGG + chr7_4:59497958-59497977 Msa1167170:intron 10.0%
!! TGAAACAAAATTATATAAAA+AGG - chr7_4:59498845-59498864 None:intergenic 10.0%
!! TTTAGTTGAAAATTGAAATT+TGG - chr7_4:59495288-59495307 None:intergenic 15.0%
!! ATTTATGTTTGAATATATCT+AGG + chr7_4:59495562-59495581 Msa1167170:intron 15.0%
!!! AAAGACAAAAAAATGTTTTA+GGG - chr7_4:59495937-59495956 None:intergenic 15.0%
!!! AAAAGACAAAAAAATGTTTT+AGG - chr7_4:59495938-59495957 None:intergenic 15.0%
!!! TGGTTAATAAATTTTAAATC+GGG + chr7_4:59496666-59496685 Msa1167170:intron 15.0%
!!! GTAATTTTGTAATTTTAGTA+GGG - chr7_4:59498116-59498135 None:intergenic 15.0%
!!! TGTAATTTTGTAATTTTAGT+AGG - chr7_4:59498117-59498136 None:intergenic 15.0%
!! AATCACAATAAACAATTAAT+TGG + chr7_4:59498153-59498172 Msa1167170:intron 15.0%
!!! GATTTCTTTTAAGAAAAAAA+TGG - chr7_4:59498720-59498739 None:intergenic 15.0%
!!! TATTTATTTTTGAAAAGTAG+TGG + chr7_4:59500269-59500288 Msa1167170:three_prime_UTR 15.0%
!!! ACTTTATTCATTTTCTCAAA+TGG + chr7_4:59495205-59495224 Msa1167170:intron 20.0%
!!! CTTTATTCATTTTCTCAAAT+GGG + chr7_4:59495206-59495225 Msa1167170:intron 20.0%
!!! TTTATTCATTTTCTCAAATG+GGG + chr7_4:59495207-59495226 Msa1167170:intron 20.0%
!! ATAGATTATAGATAGATAGA+TGG + chr7_4:59495325-59495344 Msa1167170:intron 20.0%
!! AAAATTACAAAATGGCTAAA+AGG - chr7_4:59495380-59495399 None:intergenic 20.0%
!! TACATGTGAAAATTACAAAA+TGG - chr7_4:59495388-59495407 None:intergenic 20.0%
!!! TGATTCTATATAATTGATTC+TGG + chr7_4:59495514-59495533 Msa1167170:intron 20.0%
!! GTTTAATTGAAGCTAAAAAT+TGG - chr7_4:59495645-59495664 None:intergenic 20.0%
!! TCAATTAAACTCAATTCTAT+AGG + chr7_4:59495655-59495674 Msa1167170:intron 20.0%
!! ACAAAAAATACTCTCAAATA+CGG - chr7_4:59495812-59495831 None:intergenic 20.0%
!!! AAGACAAAAAAATGTTTTAG+GGG - chr7_4:59495936-59495955 None:intergenic 20.0%
!! TATTATGAAGAAAAACAGAT+TGG + chr7_4:59495978-59495997 Msa1167170:intron 20.0%
!! ATTATGAAGAAAAACAGATT+GGG + chr7_4:59495979-59495998 Msa1167170:intron 20.0%
!! TGAAATAAGACTTGATATTT+AGG + chr7_4:59496128-59496147 Msa1167170:intron 20.0%
!! GAAATAAGACTTGATATTTA+GGG + chr7_4:59496129-59496148 Msa1167170:intron 20.0%
!!! ACATAATTTTGTCTTCTAAA+GGG + chr7_4:59496152-59496171 Msa1167170:intron 20.0%
!!! AATATAGCAAGGTTTTAAAT+TGG + chr7_4:59496749-59496768 Msa1167170:intron 20.0%
!! AGATTATTTATTGATGTTGT+TGG + chr7_4:59496929-59496948 Msa1167170:intron 20.0%
!! TCTCATTAAATGATTTAGTA+AGG + chr7_4:59497603-59497622 Msa1167170:intron 20.0%
!!! AGTCTGAAATCATATAAAAA+AGG + chr7_4:59497858-59497877 Msa1167170:CDS 20.0%
!! AATTGTTTATTGTGATTCAA+AGG - chr7_4:59498150-59498169 None:intergenic 20.0%
!! AACAATTAATTGGACTTAAT+AGG + chr7_4:59498163-59498182 Msa1167170:intron 20.0%
!! CTAAATAGAGAAAATATAAG+TGG + chr7_4:59498248-59498267 Msa1167170:intron 20.0%
!! ACAATTAAACCAATGATAAT+TGG - chr7_4:59498562-59498581 None:intergenic 20.0%
!!! CATTTATTTTATGCCAATAA+GGG + chr7_4:59498613-59498632 Msa1167170:intron 20.0%
!!! ATTTATTTTATGCCAATAAG+GGG + chr7_4:59498614-59498633 Msa1167170:intron 20.0%
!! TTCAAAAAATCATTGTTTCA+TGG + chr7_4:59498643-59498662 Msa1167170:intron 20.0%
!! TAAAAGAAATCGTAAAAGTA+TGG + chr7_4:59498729-59498748 Msa1167170:intron 20.0%
!!! AAAAGAAATCGTAAAAGTAT+GGG + chr7_4:59498730-59498749 Msa1167170:intron 20.0%
!! GTGATCAAATATATTAGAAT+TGG + chr7_4:59498894-59498913 Msa1167170:intron 20.0%
!!! TCAACTATTTTGTAATTGAT+TGG + chr7_4:59498989-59499008 Msa1167170:intron 20.0%
!! TAATGAATTAGTGTTACAAA+CGG + chr7_4:59499485-59499504 Msa1167170:intron 20.0%
!!! TTTTGTTGTATAACTTTGTT+TGG + chr7_4:59499757-59499776 Msa1167170:intron 20.0%
!! ATGATATCAATAAACTGAAT+AGG - chr7_4:59499900-59499919 None:intergenic 20.0%
!! ATGTTTAACTGAACTTTATT+GGG - chr7_4:59499934-59499953 None:intergenic 20.0%
!! TATGTTTAACTGAACTTTAT+TGG - chr7_4:59499935-59499954 None:intergenic 20.0%
! TCAAAGTAAGAGAAAAACAA+TGG - chr7_4:59494915-59494934 None:intergenic 25.0%
!! TGAATAAAGTTAGATCCTTT+TGG - chr7_4:59495195-59495214 None:intergenic 25.0%
! TGCATTGAATTTGACAAAAA+TGG - chr7_4:59495238-59495257 None:intergenic 25.0%
!!! TTCACCTCTAAAATCAATTT+TGG + chr7_4:59495690-59495709 Msa1167170:intron 25.0%
! TTATGAAGAAAAACAGATTG+GGG + chr7_4:59495980-59495999 Msa1167170:intron 25.0%
!! GACATAATTTTGTCTTCTAA+AGG + chr7_4:59496151-59496170 Msa1167170:intron 25.0%
!! TTCTAAAGGGACTTATAATT+AGG + chr7_4:59496165-59496184 Msa1167170:intron 25.0%
! TAACAGTTTCTGCATTATTT+AGG - chr7_4:59496718-59496737 None:intergenic 25.0%
! CGAAAAGTTATGAATAAATG+TGG + chr7_4:59496811-59496830 Msa1167170:intron 25.0%
! ATTACGATTTATGCATGATA+AGG + chr7_4:59497104-59497123 Msa1167170:intron 25.0%
! ATCATATAAATATGGCATTG+TGG + chr7_4:59497268-59497287 Msa1167170:intron 25.0%
! TTGATATGCTACATATGATT+TGG - chr7_4:59497523-59497542 None:intergenic 25.0%
!!! CAATTTTGACTACCATAATA+TGG + chr7_4:59497540-59497559 Msa1167170:intron 25.0%
! GAACATTAAAGTGGATATTT+GGG - chr7_4:59497693-59497712 None:intergenic 25.0%
! TGAACATTAAAGTGGATATT+TGG - chr7_4:59497694-59497713 None:intergenic 25.0%
!!! GATTTCATTTTTGACAATCT+TGG - chr7_4:59498039-59498058 None:intergenic 25.0%
!!! GTAACTTTTAAGTTAAGATG+GGG - chr7_4:59498216-59498235 None:intergenic 25.0%
!!! CGTAACTTTTAAGTTAAGAT+GGG - chr7_4:59498217-59498236 None:intergenic 25.0%
!!! TCGTAACTTTTAAGTTAAGA+TGG - chr7_4:59498218-59498237 None:intergenic 25.0%
! GTAAAAATTGCATTTGAACT+CGG - chr7_4:59498523-59498542 None:intergenic 25.0%
!!! GCATTTATTTTATGCCAATA+AGG + chr7_4:59498612-59498631 Msa1167170:intron 25.0%
!!! TTTATTTTATGCCAATAAGG+GGG + chr7_4:59498615-59498634 Msa1167170:intron 25.0%
!!! ATGAAAGTGTTGCATATTTT+AGG + chr7_4:59498787-59498806 Msa1167170:intron 25.0%
!!! TGAAAGTGTTGCATATTTTA+GGG + chr7_4:59498788-59498807 Msa1167170:intron 25.0%
!! AGCTGATTTAAATTACTTGT+TGG + chr7_4:59499061-59499080 Msa1167170:intron 25.0%
!! GCTGATTTAAATTACTTGTT+GGG + chr7_4:59499062-59499081 Msa1167170:intron 25.0%
!! ATTTGACTTAAACAGTAAAC+AGG - chr7_4:59499441-59499460 None:intergenic 25.0%
! GTTGAACATTAAATGACATT+TGG + chr7_4:59499683-59499702 Msa1167170:intron 25.0%
!! AGACTGTCATAGTAAATTTT+TGG + chr7_4:59500086-59500105 Msa1167170:three_prime_UTR 25.0%
!! TTATGCATGAACTACATTTT+AGG + chr7_4:59500225-59500244 Msa1167170:three_prime_UTR 25.0%
! TTGTGAAATTTACTCTCTTA+TGG - chr7_4:59500320-59500339 None:intergenic 25.0%
AAGAATGAAATCAAACAGGT+TGG - chr7_4:59494863-59494882 None:intergenic 30.0%
AGTGAAGAATGAAATCAAAC+AGG - chr7_4:59494867-59494886 None:intergenic 30.0%
ACAATGGAATCAATGAAAGA+GGG - chr7_4:59494899-59494918 None:intergenic 30.0%
AACAATGGAATCAATGAAAG+AGG - chr7_4:59494900-59494919 None:intergenic 30.0%
TTGAGTAAAGGATGAAACTT+CGG - chr7_4:59495060-59495079 None:intergenic 30.0%
CACAGTTGAATTACACAAAA+TGG - chr7_4:59495471-59495490 None:intergenic 30.0%
AATTCAACTGTGTGTATGTT+TGG + chr7_4:59495479-59495498 Msa1167170:intron 30.0%
! TAAAAGTGAGTTGAAGGTAA+AGG + chr7_4:59495538-59495557 Msa1167170:intron 30.0%
AAAAATACTCTCAAATACGG+TGG - chr7_4:59495809-59495828 None:intergenic 30.0%
!!! CAAAAAAATGTTTTAGGGGA+GGG - chr7_4:59495932-59495951 None:intergenic 30.0%
!!! ACAAAAAAATGTTTTAGGGG+AGG - chr7_4:59495933-59495952 None:intergenic 30.0%
! TTTTTGTCTTTTCCCATGTT+AGG + chr7_4:59495946-59495965 Msa1167170:intron 30.0%
! TTTTGTCTTTTCCCATGTTA+GGG + chr7_4:59495947-59495966 Msa1167170:intron 30.0%
ATACAAAATTCCCCTAACAT+GGG - chr7_4:59495961-59495980 None:intergenic 30.0%
AATACAAAATTCCCCTAACA+TGG - chr7_4:59495962-59495981 None:intergenic 30.0%
TATGAAGAAAAACAGATTGG+GGG + chr7_4:59495981-59496000 Msa1167170:intron 30.0%
CTTTCAATAATGCTACTACT+AGG - chr7_4:59496086-59496105 None:intergenic 30.0%
GGACTTATAATTAGGAAGAT+AGG + chr7_4:59496173-59496192 Msa1167170:intron 30.0%
!! TGTTGTTGAATTTGCTAATG+TGG + chr7_4:59496220-59496239 Msa1167170:intron 30.0%
CTTCTTAGAATACACTTCAT+AGG - chr7_4:59496392-59496411 None:intergenic 30.0%
! CTATGAAGTGTATTCTAAGA+AGG + chr7_4:59496390-59496409 Msa1167170:CDS 30.0%
! TTTTATGTTGGTATACCCTA+TGG + chr7_4:59496622-59496641 Msa1167170:CDS 30.0%
TACCCTATGGTATGTATTTA+TGG + chr7_4:59496635-59496654 Msa1167170:intron 30.0%
AGCCATAAATACATACCATA+GGG - chr7_4:59496640-59496659 None:intergenic 30.0%
ATGTATTTATGGCTGTTGTA+TGG + chr7_4:59496646-59496665 Msa1167170:intron 30.0%
AGATGCATTTGAATATAGCA+AGG + chr7_4:59496738-59496757 Msa1167170:intron 30.0%
!!! AAGGTTTTAAATTGGAGTTG+TGG + chr7_4:59496757-59496776 Msa1167170:intron 30.0%
CTGCAATATCATTATTTGGA+AGG - chr7_4:59496868-59496887 None:intergenic 30.0%
TCAATAAATAATCTAGTCCG+TGG - chr7_4:59496923-59496942 None:intergenic 30.0%
TTGTCCTCAACCTATTAATA+GGG - chr7_4:59497031-59497050 None:intergenic 30.0%
ATTGTCCTCAACCTATTAAT+AGG - chr7_4:59497032-59497051 None:intergenic 30.0%
GCATATTTAAGTCCTACAAA+AGG - chr7_4:59497135-59497154 None:intergenic 30.0%
AGGACTTAAATATGCTGATA+AGG + chr7_4:59497140-59497159 Msa1167170:intron 30.0%
TGATGAAAGTTATCCTCTAA+TGG + chr7_4:59497179-59497198 Msa1167170:intron 30.0%
! GTCATTGATAACATTGACAA+GGG - chr7_4:59497215-59497234 None:intergenic 30.0%
CTTGTCAATGTTATCAATGA+CGG + chr7_4:59497214-59497233 Msa1167170:intron 30.0%
! TGATAAAGCATTCAATAAGC+CGG - chr7_4:59497566-59497585 None:intergenic 30.0%
GATATGACTATTATACTGAC+TGG + chr7_4:59497642-59497661 Msa1167170:intron 30.0%
ATTAAAGTGGATATTTGGGA+GGG - chr7_4:59497689-59497708 None:intergenic 30.0%
ACATCACATGAACATTAAAG+TGG - chr7_4:59497702-59497721 None:intergenic 30.0%
TAACAAACCTGCAAAGTAAT+AGG - chr7_4:59497736-59497755 None:intergenic 30.0%
TTCCTTTCCTTTATGATAAC+AGG + chr7_4:59497771-59497790 Msa1167170:CDS 30.0%
TTCCTGTTATCATAAAGGAA+AGG - chr7_4:59497776-59497795 None:intergenic 30.0%
AATGCTTCCTGTTATCATAA+AGG - chr7_4:59497781-59497800 None:intergenic 30.0%
GAGAGAAAACATTTAAATCC+AGG + chr7_4:59498080-59498099 Msa1167170:intron 30.0%
TGTTTATTGTGATTCAAAGG+TGG - chr7_4:59498147-59498166 None:intergenic 30.0%
!! TTAATGGGCTTCTATTTCAT+GGG - chr7_4:59498310-59498329 None:intergenic 30.0%
TGTAAATTACATACCCTTTC+CGG - chr7_4:59498337-59498356 None:intergenic 30.0%
! AAATCATATCTTGGTGTGAT+TGG - chr7_4:59498446-59498465 None:intergenic 30.0%
! TCACACCAAGATATGATTTT+TGG + chr7_4:59498447-59498466 Msa1167170:intron 30.0%
!!! ATTTTTGGTGTGCATAAGAT+TGG + chr7_4:59498462-59498481 Msa1167170:intron 30.0%
! ATTGGTCAATAGTATTGAAC+TGG + chr7_4:59498480-59498499 Msa1167170:intron 30.0%
TCAATGCATCCAATTATCAT+TGG + chr7_4:59498550-59498569 Msa1167170:intron 30.0%
TCATGGTCGAAATGATTTAT+TGG + chr7_4:59498660-59498679 Msa1167170:intron 30.0%
CATGGTCGAAATGATTTATT+GGG + chr7_4:59498661-59498680 Msa1167170:intron 30.0%
TCGAAATGATTTATTGGGTT+TGG + chr7_4:59498666-59498685 Msa1167170:intron 30.0%
AATTTAAATCAGCTATGCGA+TGG - chr7_4:59499055-59499074 None:intergenic 30.0%
TTGAATAGAAACCTAATGCT+AGG - chr7_4:59499648-59499667 None:intergenic 30.0%
TTAGAAGGTAAACCACAAAA+AGG + chr7_4:59499826-59499845 Msa1167170:CDS 30.0%
! TCAAAGTTTGAACCTTTTTG+TGG - chr7_4:59499841-59499860 None:intergenic 30.0%
CAAAAAGGTTCAAACTTTGA+AGG + chr7_4:59499841-59499860 Msa1167170:CDS 30.0%
! AAGCAATATCATGATTTTCC+AGG - chr7_4:59500175-59500194 None:intergenic 30.0%
GATGTTTCTCTTACCAAATA+AGG + chr7_4:59500389-59500408 Msa1167170:three_prime_UTR 30.0%
!!! CACTTTTTCACATCCTTATT+TGG - chr7_4:59500405-59500424 None:intergenic 30.0%
! ATAAGGATGTGAAAAAGTGT+AGG + chr7_4:59500406-59500425 Msa1167170:three_prime_UTR 30.0%
! CAGAGGAAGTTTGGAATAAT+CGG - chr7_4:59494826-59494845 None:intergenic 35.0%
!! AATCAAACAGGTTGGTTGTT+CGG - chr7_4:59494855-59494874 None:intergenic 35.0%
!! GAAGCCATTTAGGTTGAAAA+GGG - chr7_4:59494967-59494986 None:intergenic 35.0%
TAACACAGAAACTGAATCCA+TGG - chr7_4:59495001-59495020 None:intergenic 35.0%
!! GGGACCAAAATTGATTTTAG+AGG - chr7_4:59495697-59495716 None:intergenic 35.0%
!! AAAATCAATTTTGGTCCCTC+TGG + chr7_4:59495699-59495718 Msa1167170:intron 35.0%
! TTTGTCTTTTCCCATGTTAG+GGG + chr7_4:59495948-59495967 Msa1167170:intron 35.0%
!! AAGAGCTTTGAGAAAAAGGA+AGG - chr7_4:59496016-59496035 None:intergenic 35.0%
TATGTTTGGGAGTTTAGTAG+GGG - chr7_4:59496043-59496062 None:intergenic 35.0%
CTATGTTTGGGAGTTTAGTA+GGG - chr7_4:59496044-59496063 None:intergenic 35.0%
! ATGTGGATTGTGAACTGTAT+AGG + chr7_4:59496237-59496256 Msa1167170:intron 35.0%
TTGTGAACTGTATAGGATCA+TGG + chr7_4:59496244-59496263 Msa1167170:intron 35.0%
!! AACAAGCTTTGAAGCTACAA+GGG + chr7_4:59496353-59496372 Msa1167170:CDS 35.0%
AGTATCTTGCAAAACCACAA+TGG - chr7_4:59496416-59496435 None:intergenic 35.0%
TTCAGAACAGTTGAAGATAC+AGG + chr7_4:59496435-59496454 Msa1167170:CDS 35.0%
CAAATCATGTCTTGCCTTAT+CGG - chr7_4:59496461-59496480 None:intergenic 35.0%
! AAGACATGATTTGAGTGTTG+TGG + chr7_4:59496468-59496487 Msa1167170:CDS 35.0%
CAGCCATAAATACATACCAT+AGG - chr7_4:59496641-59496660 None:intergenic 35.0%
GAATAAATGTGGCTGAATTG+TGG + chr7_4:59496822-59496841 Msa1167170:intron 35.0%
TAGTCCGTGGTTTCAATTTA+CGG - chr7_4:59496910-59496929 None:intergenic 35.0%
!! TGTTGTTGGCTAAAGTTTTG+TGG + chr7_4:59496943-59496962 Msa1167170:intron 35.0%
GATTCTATACCGACACATTT+AGG + chr7_4:59496999-59497018 Msa1167170:intron 35.0%
TAGGCTAAGTCCCTATTAAT+AGG + chr7_4:59497018-59497037 Msa1167170:intron 35.0%
AAGTCCCTATTAATAGGTTG+AGG + chr7_4:59497024-59497043 Msa1167170:intron 35.0%
ACTTGATCATCTTCACATGT+TGG + chr7_4:59497057-59497076 Msa1167170:intron 35.0%
CTTGATCATCTTCACATGTT+GGG + chr7_4:59497058-59497077 Msa1167170:intron 35.0%
AAATCGTAATCCCCATTAGT+AGG - chr7_4:59497094-59497113 None:intergenic 35.0%
!!! GATAAGGATTAGCCTTTTGT+AGG + chr7_4:59497120-59497139 Msa1167170:intron 35.0%
AAAGTTATCCTCTAATGGAG+AGG + chr7_4:59497184-59497203 Msa1167170:intron 35.0%
! CGTCATTGATAACATTGACA+AGG - chr7_4:59497216-59497235 None:intergenic 35.0%
ATGCCTATATTATCTGCCAT+AGG - chr7_4:59497294-59497313 None:intergenic 35.0%
TATGGCAGATAATATAGGCA+TGG + chr7_4:59497293-59497312 Msa1167170:intron 35.0%
GTTGTTGACACAATCAATCA+TGG + chr7_4:59497315-59497334 Msa1167170:intron 35.0%
ATAATGCCATGTCAGCAATT+TGG + chr7_4:59497339-59497358 Msa1167170:intron 35.0%
ATCAGTCCTTACTCCTTATA+AGG - chr7_4:59497375-59497394 None:intergenic 35.0%
TTTGACTACCATAATATGGC+CGG + chr7_4:59497544-59497563 Msa1167170:intron 35.0%
CATTAAAGTGGATATTTGGG+AGG - chr7_4:59497690-59497709 None:intergenic 35.0%
TGATACTCCTATTACTTTGC+AGG + chr7_4:59497726-59497745 Msa1167170:intron 35.0%
!! ATAAGGTTTGGGGTGATTTT+AGG + chr7_4:59497807-59497826 Msa1167170:CDS 35.0%
CATACTATTGCAAACGTTAG+AGG - chr7_4:59498013-59498032 None:intergenic 35.0%
TGAAATCTCCTACCTAAGAT+TGG + chr7_4:59498052-59498071 Msa1167170:intron 35.0%
! TAGTAGGGTTTTCTAATTCC+TGG - chr7_4:59498101-59498120 None:intergenic 35.0%
ATGCAAACTCATAAGTCACA+AGG + chr7_4:59498190-59498209 Msa1167170:intron 35.0%
GAGAAAATATAAGTGGAGAC+CGG + chr7_4:59498255-59498274 Msa1167170:intron 35.0%
!! CTTAATGGGCTTCTATTTCA+TGG - chr7_4:59498311-59498330 None:intergenic 35.0%
ATAGAAGCCCATTAAGTAAC+CGG + chr7_4:59498315-59498334 Msa1167170:intron 35.0%
! GGAAAGGGTATGTAATTTAC+AGG + chr7_4:59498336-59498355 Msa1167170:intron 35.0%
TAGGATGACCTAGAATACTT+GGG - chr7_4:59498421-59498440 None:intergenic 35.0%
GCACACCAAAAATCATATCT+TGG - chr7_4:59498455-59498474 None:intergenic 35.0%
TTTGAAGAAAACCCCCTTAT+TGG - chr7_4:59498629-59498648 None:intergenic 35.0%
! GAAATCGTAAAAGTATGGGT+TGG + chr7_4:59498734-59498753 Msa1167170:intron 35.0%
AACAAGTGCAAGCTAGTAAT+TGG - chr7_4:59498765-59498784 None:intergenic 35.0%
!! AAGGCACATATAAGTATCGA+TGG - chr7_4:59498947-59498966 None:intergenic 35.0%
TGTTTAGAGAGCTGGATAAA+AGG - chr7_4:59498966-59498985 None:intergenic 35.0%
!! AGTGAAATAAGTTGATCCCT+GGG - chr7_4:59499241-59499260 None:intergenic 35.0%
CTTATTTCACTGCTTTGATC+AGG + chr7_4:59499250-59499269 Msa1167170:CDS 35.0%
TTGAGATTATCGGTAAAGGT+TGG - chr7_4:59499362-59499381 None:intergenic 35.0%
AAACATGAAAAAGCAGCAAG+TGG - chr7_4:59499385-59499404 None:intergenic 35.0%
TTCCTACTTGACATTGCATT+TGG + chr7_4:59499512-59499531 Msa1167170:intron 35.0%
ACTGGCAAATAATTGCTAGT+TGG + chr7_4:59499535-59499554 Msa1167170:intron 35.0%
! GGCATTTTATGTCTATAGAC+TGG + chr7_4:59499801-59499820 Msa1167170:CDS 35.0%
!!! GTCTATAGACTGGTTTTAGA+AGG + chr7_4:59499811-59499830 Msa1167170:CDS 35.0%
AGGAAACTAGTTCAGTGATA+AGG + chr7_4:59499870-59499889 Msa1167170:exon 35.0%
GAAGTGTGTATGTTGAAAAG+AGG - chr7_4:59499970-59499989 None:intergenic 35.0%
! TGCATGAACTACATTTTAGG+TGG + chr7_4:59500228-59500247 Msa1167170:three_prime_UTR 35.0%
!! GCATGAACTACATTTTAGGT+GGG + chr7_4:59500229-59500248 Msa1167170:three_prime_UTR 35.0%
TTAGGTGGGATATTATGAAC+TGG + chr7_4:59500243-59500262 Msa1167170:three_prime_UTR 35.0%
! AGGAAGTTTGGAATAATCGG+TGG - chr7_4:59494823-59494842 None:intergenic 40.0%
GAAAACGAGAGTTTGGGAAT+TGG - chr7_4:59494940-59494959 None:intergenic 40.0%
! TTCGCCCTTTTCAACCTAAA+TGG + chr7_4:59494960-59494979 Msa1167170:exon 40.0%
!! CGAAGCCATTTAGGTTGAAA+AGG - chr7_4:59494968-59494987 None:intergenic 40.0%
GAAACTCATCGAAGCCATTT+AGG - chr7_4:59494977-59494996 None:intergenic 40.0%
! AGAGTTTGAAAGTGGTGTTG+CGG - chr7_4:59495086-59495105 None:intergenic 40.0%
AGGAAGAGAGAGTTTGAAAG+TGG - chr7_4:59495094-59495113 None:intergenic 40.0%
CATGACTCTGTAAGTCCAAA+AGG + chr7_4:59495177-59495196 Msa1167170:intron 40.0%
! TCTGGCTAAAAGTGAGTTGA+AGG + chr7_4:59495532-59495551 Msa1167170:intron 40.0%
! GTTTTTCTGCAGCTCTGTTT+GGG + chr7_4:59495721-59495740 Msa1167170:intron 40.0%
!!! AATGTTTTAGGGGAGGGTTT+AGG - chr7_4:59495926-59495945 None:intergenic 40.0%
!! AGGGAAGAGCTTTGAGAAAA+AGG - chr7_4:59496020-59496039 None:intergenic 40.0%
GCTATGTTTGGGAGTTTAGT+AGG - chr7_4:59496045-59496064 None:intergenic 40.0%
TGCTACTACTAGGTTGTCTT+GGG - chr7_4:59496076-59496095 None:intergenic 40.0%
ATGCTACTACTAGGTTGTCT+TGG - chr7_4:59496077-59496096 None:intergenic 40.0%
ATAGGATCATGGTGAAGTTG+AGG + chr7_4:59496255-59496274 Msa1167170:intron 40.0%
!! GAATGATGTTAGTTCTGAGG+AGG + chr7_4:59496288-59496307 Msa1167170:CDS 40.0%
!! GAACAAGCTTTGAAGCTACA+AGG + chr7_4:59496352-59496371 Msa1167170:CDS 40.0%
!! ACAAGCTTTGAAGCTACAAG+GGG + chr7_4:59496354-59496373 Msa1167170:CDS 40.0%
! GTATTCTAAGAAGGCCATTG+TGG + chr7_4:59496399-59496418 Msa1167170:CDS 40.0%
TTTGCTGAGATCATCATCTG+GGG - chr7_4:59496584-59496603 None:intergenic 40.0%
CTTTGCTGAGATCATCATCT+GGG - chr7_4:59496585-59496604 None:intergenic 40.0%
ACTTTGCTGAGATCATCATC+TGG - chr7_4:59496586-59496605 None:intergenic 40.0%
GATGATCTCAGCAAAGTTTC+TGG + chr7_4:59496589-59496608 Msa1167170:CDS 40.0%
!! TCAGCAAAGTTTCTGGAGTT+CGG + chr7_4:59496596-59496615 Msa1167170:CDS 40.0%
GCGGCTGCAATATCATTATT+TGG - chr7_4:59496872-59496891 None:intergenic 40.0%
TCGACCGTAAATTGAAACCA+CGG + chr7_4:59496903-59496922 Msa1167170:intron 40.0%
!! TGTTGGCTAAAGTTTTGTGG+CGG + chr7_4:59496946-59496965 Msa1167170:intron 40.0%
!! GAGGTATTGCTCCTACTAAT+GGG + chr7_4:59497080-59497099 Msa1167170:intron 40.0%
! AGGTATTGCTCCTACTAATG+GGG + chr7_4:59497081-59497100 Msa1167170:intron 40.0%
AAATATGGCATTGTGGCCTA+TGG + chr7_4:59497275-59497294 Msa1167170:intron 40.0%
TGGCCTATGGCAGATAATAT+AGG + chr7_4:59497288-59497307 Msa1167170:intron 40.0%
ACCAGTCCTTATAAGGAGTA+AGG + chr7_4:59497366-59497385 Msa1167170:intron 40.0%
TCCTTACTCCTTATAAGGAC+TGG - chr7_4:59497370-59497389 None:intergenic 40.0%
TGATGTTGTGGGTGTCTTTA+TGG + chr7_4:59497391-59497410 Msa1167170:intron 40.0%
TCAATAAGCCGGCCATATTA+TGG - chr7_4:59497555-59497574 None:intergenic 40.0%
!! TGCAGGTTTGTTACTATCTG+CGG + chr7_4:59497743-59497762 Msa1167170:intron 40.0%
AGCATTGCAGCAATAAGGTT+TGG + chr7_4:59497795-59497814 Msa1167170:CDS 40.0%
GCATTGCAGCAATAAGGTTT+GGG + chr7_4:59497796-59497815 Msa1167170:CDS 40.0%
CATTGCAGCAATAAGGTTTG+GGG + chr7_4:59497797-59497816 Msa1167170:CDS 40.0%
!! GATTTTAGGTGGTGTGCTAT+TGG + chr7_4:59497821-59497840 Msa1167170:CDS 40.0%
AGCATATGATCTTACCTGTC+TGG - chr7_4:59497911-59497930 None:intergenic 40.0%
ATCTCCTACCTAAGATTGGA+AGG + chr7_4:59498056-59498075 Msa1167170:intron 40.0%
TCTCCTACCTAAGATTGGAA+GGG + chr7_4:59498057-59498076 Msa1167170:intron 40.0%
! GACTATCGTCCTCTATTTTC+CGG - chr7_4:59498277-59498296 None:intergenic 40.0%
ACCCTTTCCGGTTACTTAAT+GGG - chr7_4:59498325-59498344 None:intergenic 40.0%
TACCCTTTCCGGTTACTTAA+TGG - chr7_4:59498326-59498345 None:intergenic 40.0%
GTAGGATGACCTAGAATACT+TGG - chr7_4:59498422-59498441 None:intergenic 40.0%
! TATCTTGGTGTGATTGGTGT+AGG - chr7_4:59498440-59498459 None:intergenic 40.0%
! GGTCAATAGTATTGAACTGG+AGG + chr7_4:59498483-59498502 Msa1167170:intron 40.0%
! GTTGATGTTGTTTAGAGAGC+TGG - chr7_4:59498974-59498993 None:intergenic 40.0%
!!! CTCTTGTTTTCCTTTTCCCA+GGG + chr7_4:59499222-59499241 Msa1167170:intron 40.0%
!! ATAAGTTGATCCCTGGGAAA+AGG - chr7_4:59499235-59499254 None:intergenic 40.0%
!! CAGTGAAATAAGTTGATCCC+TGG - chr7_4:59499242-59499261 None:intergenic 40.0%
ATTATCGGTAAAGGTTGGCA+TGG - chr7_4:59499357-59499376 None:intergenic 40.0%
GTGGTTGAGATTATCGGTAA+AGG - chr7_4:59499366-59499385 None:intergenic 40.0%
CAGCAAGTGGTTGAGATTAT+CGG - chr7_4:59499372-59499391 None:intergenic 40.0%
GTCCAAATGCAATGTCAAGT+AGG - chr7_4:59499517-59499536 None:intergenic 40.0%
ACTTGACATTGCATTTGGAC+TGG + chr7_4:59499517-59499536 Msa1167170:intron 40.0%
CAGAAAACTCACCTAGCATT+AGG + chr7_4:59499634-59499653 Msa1167170:intron 40.0%
TATTCAACCTGCAGAAATGC+AGG + chr7_4:59499661-59499680 Msa1167170:intron 40.0%
! ACTTTGTTTGGCATTTGCAG+TGG + chr7_4:59499769-59499788 Msa1167170:intron 40.0%
! TCAAACTTTGAAGGTGAAGC+AGG + chr7_4:59499850-59499869 Msa1167170:CDS 40.0%
TTGCTGATGGTTAGGATTAG+TGG + chr7_4:59500128-59500147 Msa1167170:three_prime_UTR 40.0%
! TGGTTAGGATTAGTGGTTCA+TGG + chr7_4:59500135-59500154 Msa1167170:three_prime_UTR 40.0%
! GGTTAGGATTAGTGGTTCAT+GGG + chr7_4:59500136-59500155 Msa1167170:three_prime_UTR 40.0%
AGTGAAGACTGAAGAATGCA+AGG - chr7_4:59500297-59500316 None:intergenic 40.0%
TTTACATGCTTACTTGAGCC+TGG + chr7_4:59500340-59500359 Msa1167170:three_prime_UTR 40.0%
TTACATGCTTACTTGAGCCT+GGG + chr7_4:59500341-59500360 Msa1167170:three_prime_UTR 40.0%
! GTTAGTTACTTTACAACCCC+AGG - chr7_4:59500361-59500380 None:intergenic 40.0%
!!! TGGTTTTGTCACGTGTGTGT+CGG - chr7_4:59494803-59494822 None:intergenic 45.0%
CGGAAAATGCAGAGGAAGTT+TGG - chr7_4:59494835-59494854 None:intergenic 45.0%
TGGTTGTTCGGAAAATGCAG+AGG - chr7_4:59494843-59494862 None:intergenic 45.0%
GGCGAAGAAAACGAGAGTTT+GGG - chr7_4:59494946-59494965 None:intergenic 45.0%
GATGGGTGTGGTTGAGTTTA+GGG - chr7_4:59495026-59495045 None:intergenic 45.0%
AGATGGGTGTGGTTGAGTTT+AGG - chr7_4:59495027-59495046 None:intergenic 45.0%
CTTCGGAGAATGAGAGAGAT+GGG - chr7_4:59495043-59495062 None:intergenic 45.0%
ACTTCGGAGAATGAGAGAGA+TGG - chr7_4:59495044-59495063 None:intergenic 45.0%
GTGTTGCGGTGTTTGAGTAA+AGG - chr7_4:59495072-59495091 None:intergenic 45.0%
GGACTTACAGAGTCATGTTG+AGG - chr7_4:59495174-59495193 None:intergenic 45.0%
AGAGCTGCAGAAAAACCAGA+GGG - chr7_4:59495717-59495736 None:intergenic 45.0%
! GGTTTTTCTGCAGCTCTGTT+TGG + chr7_4:59495720-59495739 Msa1167170:intron 45.0%
TTTGGGAGTTTAGTAGGGGA+GGG - chr7_4:59496039-59496058 None:intergenic 45.0%
GGGAGATGAAGGCTATGTTT+GGG - chr7_4:59496056-59496075 None:intergenic 45.0%
TGGGAGATGAAGGCTATGTT+TGG - chr7_4:59496057-59496076 None:intergenic 45.0%
TAGGTTGTCTTGGGAGATGA+AGG - chr7_4:59496067-59496086 None:intergenic 45.0%
TGGTGAAGTTGAGGTAGAGA+AGG + chr7_4:59496264-59496283 Msa1167170:CDS 45.0%
GGTGAAGTTGAGGTAGAGAA+GGG + chr7_4:59496265-59496284 Msa1167170:CDS 45.0%
GTGAAGTTGAGGTAGAGAAG+GGG + chr7_4:59496266-59496285 Msa1167170:CDS 45.0%
!! GGGGAATGATGTTAGTTCTG+AGG + chr7_4:59496285-59496304 Msa1167170:CDS 45.0%
!! TAGTTCTGAGGAGGAATCAC+AGG + chr7_4:59496297-59496316 Msa1167170:CDS 45.0%
!! GCAGGCTTTGGATACATTCA+AGG + chr7_4:59496330-59496349 Msa1167170:CDS 45.0%
GTTGAAGATACAGGCCGATA+AGG + chr7_4:59496444-59496463 Msa1167170:CDS 45.0%
! TGATTTGAGTGTTGTGGCGA+AGG + chr7_4:59496474-59496493 Msa1167170:CDS 45.0%
GCGAAGGAAATCACTGAAGA+AGG + chr7_4:59496490-59496509 Msa1167170:CDS 45.0%
TGAGAATTCACCTGAGGTGA+AGG + chr7_4:59496537-59496556 Msa1167170:CDS 45.0%
ACCTGAGGTGAAGGAAATTG+TGG + chr7_4:59496546-59496565 Msa1167170:CDS 45.0%
TCCACAATTTCCTTCACCTC+AGG - chr7_4:59496550-59496569 None:intergenic 45.0%
!! CAGCAAAGTTTCTGGAGTTC+GGG + chr7_4:59496597-59496616 Msa1167170:CDS 45.0%
! GGAGTTCGGGACTTTTATGT+TGG + chr7_4:59496610-59496629 Msa1167170:CDS 45.0%
GCTGAATTGTGGTTACGATG+CGG + chr7_4:59496833-59496852 Msa1167170:intron 45.0%
GGGACTTAGCCTAAATGTGT+CGG - chr7_4:59497011-59497030 None:intergenic 45.0%
GATCATCTTCACATGTTGGG+AGG + chr7_4:59497061-59497080 Msa1167170:intron 45.0%
!! GGAGGTATTGCTCCTACTAA+TGG + chr7_4:59497079-59497098 Msa1167170:intron 45.0%
!! CAATGACGGACGACAGATTA+TGG + chr7_4:59497228-59497247 Msa1167170:intron 45.0%
GTGTTGCCAAATTGCTGACA+TGG - chr7_4:59497348-59497367 None:intergenic 45.0%
TGGCAACACCAGTCCTTATA+AGG + chr7_4:59497359-59497378 Msa1167170:intron 45.0%
AGGAGTAAGGACTGATGTTG+TGG + chr7_4:59497379-59497398 Msa1167170:intron 45.0%
GGAGTAAGGACTGATGTTGT+GGG + chr7_4:59497380-59497399 Msa1167170:intron 45.0%
!! GCAGGTTTGTTACTATCTGC+GGG + chr7_4:59497744-59497763 Msa1167170:intron 45.0%
!! CAGGAAGCATTGCAGCAATA+AGG + chr7_4:59497790-59497809 Msa1167170:CDS 45.0%
!! AGGTTTGGGGTGATTTTAGG+TGG + chr7_4:59497810-59497829 Msa1167170:CDS 45.0%
CCCTTCAAAGCAAGAGAAGA+GGG - chr7_4:59497888-59497907 None:intergenic 45.0%
! CCCTCTTCTCTTGCTTTGAA+GGG + chr7_4:59497885-59497904 Msa1167170:CDS 45.0%
CTCCTACCTAAGATTGGAAG+GGG + chr7_4:59498058-59498077 Msa1167170:intron 45.0%
TTCTCTCCCCTTCCAATCTT+AGG - chr7_4:59498067-59498086 None:intergenic 45.0%
AAGTGGAGACCGGAAAATAG+AGG + chr7_4:59498265-59498284 Msa1167170:intron 45.0%
CTTCTATTTCATGGGACCGT+GGG - chr7_4:59498302-59498321 None:intergenic 45.0%
AGCCCATTAAGTAACCGGAA+AGG + chr7_4:59498320-59498339 Msa1167170:intron 45.0%
GCCCATTAAGTAACCGGAAA+GGG + chr7_4:59498321-59498340 Msa1167170:intron 45.0%
ACCTTTACTGCAGGTCTAGT+GGG - chr7_4:59498365-59498384 None:intergenic 45.0%
! TAGACCTGCAGTAAAGGTGT+GGG + chr7_4:59498367-59498386 Msa1167170:intron 45.0%
ACCTAGAATACTTGGGCGAT+TGG - chr7_4:59498414-59498433 None:intergenic 45.0%
CTGCGTGAGATCAGCATATT+AGG + chr7_4:59499112-59499131 Msa1167170:CDS 45.0%
!!! GCTCTTGTTTTCCTTTTCCC+AGG + chr7_4:59499221-59499240 Msa1167170:intron 45.0%
TGTTCAACCTGCATTTCTGC+AGG - chr7_4:59499671-59499690 None:intergenic 45.0%
AAGACTCGTTGCTGATGGTT+AGG + chr7_4:59500120-59500139 Msa1167170:three_prime_UTR 45.0%
! TAGGATTAGTGGTTCATGGG+TGG + chr7_4:59500139-59500158 Msa1167170:three_prime_UTR 45.0%
TACATGCTTACTTGAGCCTG+GGG + chr7_4:59500342-59500361 Msa1167170:three_prime_UTR 45.0%
!!! TATTTATATGATAAATTTTT+TGG - chr7_4:59497260-59497279 None:intergenic 5.0%
!! AAAAATTTATCATATAAATA+TGG + chr7_4:59497260-59497279 Msa1167170:intron 5.0%
!!! ATTTTGTTTTTATATAATAT+TGG + chr7_4:59498817-59498836 Msa1167170:intron 5.0%
!! GGTTTTGTCACGTGTGTGTC+GGG - chr7_4:59494802-59494821 None:intergenic 50.0%
GGGCGAAGAAAACGAGAGTT+TGG - chr7_4:59494947-59494966 None:intergenic 50.0%
GGCTTCGATGAGTTTCACCA+TGG + chr7_4:59494981-59495000 Msa1167170:CDS 50.0%
GAGAATGAGAGAGATGGGTG+TGG - chr7_4:59495038-59495057 None:intergenic 50.0%
! CGTTGATTGAGGGCATAACG+AGG - chr7_4:59495114-59495133 None:intergenic 50.0%
!! CGGTTTGCTGCGTTGATTGA+GGG - chr7_4:59495124-59495143 None:intergenic 50.0%
!! ACGGTTTGCTGCGTTGATTG+AGG - chr7_4:59495125-59495144 None:intergenic 50.0%
GCAGCGAAAACGAGGGTTAA+CGG - chr7_4:59495144-59495163 None:intergenic 50.0%
CAGAGCTGCAGAAAAACCAG+AGG - chr7_4:59495718-59495737 None:intergenic 50.0%
! TGCAGCTCTGTTTGGGACTT+TGG + chr7_4:59495728-59495747 Msa1167170:intron 50.0%
! AGCTCTGTTTGGGACTTTGG+AGG + chr7_4:59495731-59495750 Msa1167170:intron 50.0%
! GCTCTGTTTGGGACTTTGGA+GGG + chr7_4:59495732-59495751 Msa1167170:intron 50.0%
! CTCTGTTTGGGACTTTGGAG+GGG + chr7_4:59495733-59495752 Msa1167170:intron 50.0%
GTTTGGGAGTTTAGTAGGGG+AGG - chr7_4:59496040-59496059 None:intergenic 50.0%
AGGAGGAATCACAGGAAGCA+TGG + chr7_4:59496305-59496324 Msa1167170:CDS 50.0%
! ATCACAGGAAGCATGGAAGC+AGG + chr7_4:59496312-59496331 Msa1167170:CDS 50.0%
TGCTGCTGAGAATTCACCTG+AGG + chr7_4:59496531-59496550 Msa1167170:CDS 50.0%
ACGGTCGATGACAGCAATTG+CGG - chr7_4:59496891-59496910 None:intergenic 50.0%
!! TGGCTAAAGTTTTGTGGCGG+CGG + chr7_4:59496949-59496968 Msa1167170:intron 50.0%
GGGCTTTACCTCTCCATTAG+AGG - chr7_4:59497195-59497214 None:intergenic 50.0%
!! GGTTTGTTACTATCTGCGGG+TGG + chr7_4:59497747-59497766 Msa1167170:intron 50.0%
GCCCTCTTCTCTTGCTTTGA+AGG + chr7_4:59497884-59497903 Msa1167170:CDS 50.0%
GCCCTTCAAAGCAAGAGAAG+AGG - chr7_4:59497889-59497908 None:intergenic 50.0%
CTCCCCTTCCAATCTTAGGT+AGG - chr7_4:59498063-59498082 None:intergenic 50.0%
GCTTCTATTTCATGGGACCG+TGG - chr7_4:59498303-59498322 None:intergenic 50.0%
ACCCACTAGACCTGCAGTAA+AGG + chr7_4:59498361-59498380 Msa1167170:intron 50.0%
CACCTTTACTGCAGGTCTAG+TGG - chr7_4:59498366-59498385 None:intergenic 50.0%
CTAGACCTGCAGTAAAGGTG+TGG + chr7_4:59498366-59498385 Msa1167170:intron 50.0%
ATTGGCAGGCTTCTGCAATC+AGG - chr7_4:59498396-59498415 None:intergenic 50.0%
AGAATACTTGGGCGATTGGC+AGG - chr7_4:59498410-59498429 None:intergenic 50.0%
GCCAATCGCCCAAGTATTCT+AGG + chr7_4:59498410-59498429 Msa1167170:intron 50.0%
GTTTGGCATTTGCAGTGGTG+CGG + chr7_4:59499774-59499793 Msa1167170:intron 50.0%
TCGTCAAGACTCGTTGCTGA+TGG + chr7_4:59500115-59500134 Msa1167170:three_prime_UTR 50.0%
ATGGGTGGAAAAATCGAGCC+TGG + chr7_4:59500154-59500173 Msa1167170:three_prime_UTR 50.0%
CGTAGCAGCAGCGAAAACGA+GGG - chr7_4:59495151-59495170 None:intergenic 55.0%
! GGACTTTGGAGGGGAGTAGA+GGG + chr7_4:59495742-59495761 Msa1167170:intron 55.0%
! GGAAGCATGGAAGCAGGCTT+TGG + chr7_4:59496318-59496337 Msa1167170:CDS 55.0%
GCTGAGATCATCATCTGGGG+AGG - chr7_4:59496581-59496600 None:intergenic 55.0%
!! CTTGCTTTGAAGGGCCAGAC+AGG + chr7_4:59497894-59497913 Msa1167170:CDS 55.0%
AGAGGACGATAGTCAGCCCA+CGG + chr7_4:59498283-59498302 Msa1167170:intron 55.0%
GATGCCCACACCTTTACTGC+AGG - chr7_4:59498374-59498393 None:intergenic 55.0%
GTTGGGCTTGCAGCTATAGC+AGG + chr7_4:59499079-59499098 Msa1167170:intron 55.0%
GCGTAGCAGCAGCGAAAACG+AGG - chr7_4:59495152-59495171 None:intergenic 60.0%
! GGGACTTTGGAGGGGAGTAG+AGG + chr7_4:59495741-59495760 Msa1167170:intron 60.0%
TGGAGGGGAGTAGAGGGCTT+TGG + chr7_4:59495748-59495767 Msa1167170:intron 60.0%
GGAGGGGAGTAGAGGGCTTT+GGG + chr7_4:59495749-59495768 Msa1167170:intron 60.0%
GAGGGGAGTAGAGGGCTTTG+GGG + chr7_4:59495750-59495769 Msa1167170:intron 60.0%
! AGGGGAGTAGAGGGCTTTGG+GGG + chr7_4:59495751-59495770 Msa1167170:intron 60.0%
!! AGTAGAGGGCTTTGGGGGGA+GGG + chr7_4:59495756-59495775 Msa1167170:intron 60.0%
!! GGGGAGTAGAGGGCTTTGGG+GGG + chr7_4:59495752-59495771 Msa1167170:intron 65.0%
!! GAGTAGAGGGCTTTGGGGGG+AGG + chr7_4:59495755-59495774 Msa1167170:intron 65.0%
!! GTAGAGGGCTTTGGGGGGAG+GGG + chr7_4:59495757-59495776 Msa1167170:intron 65.0%
! CTTTGGGGGGAGGGGAAGAG+AGG + chr7_4:59495765-59495784 Msa1167170:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 59494798 59500488 59494798 ID=Msa1167170;Name=Msa1167170
chr7_4 mRNA 59494798 59500488 59494798 ID=Msa1167170-mRNA-1;Parent=Msa1167170;Name=Msa1167170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=181|1|1|1|0.83|0.85|7|470|308
chr7_4 exon 59494798 59495185 59494798 ID=Msa1167170-mRNA-1:exon:18495;Parent=Msa1167170-mRNA-1
chr7_4 exon 59496259 59496643 59496259 ID=Msa1167170-mRNA-1:exon:18496;Parent=Msa1167170-mRNA-1
chr7_4 exon 59497748 59497915 59497748 ID=Msa1167170-mRNA-1:exon:18497;Parent=Msa1167170-mRNA-1
chr7_4 exon 59499092 59499138 59499092 ID=Msa1167170-mRNA-1:exon:18498;Parent=Msa1167170-mRNA-1
chr7_4 exon 59499243 59499271 59499243 ID=Msa1167170-mRNA-1:exon:18499;Parent=Msa1167170-mRNA-1
chr7_4 exon 59499789 59499891 59499789 ID=Msa1167170-mRNA-1:exon:18500;Parent=Msa1167170-mRNA-1
chr7_4 exon 59500031 59500488 59500031 ID=Msa1167170-mRNA-1:exon:18501;Parent=Msa1167170-mRNA-1
chr7_4 five_prime_UTR 59494798 59494978 59494798 ID=Msa1167170-mRNA-1:five_prime_utr;Parent=Msa1167170-mRNA-1
chr7_4 CDS 59494979 59495185 59494979 ID=Msa1167170-mRNA-1:cds;Parent=Msa1167170-mRNA-1
chr7_4 CDS 59496259 59496643 59496259 ID=Msa1167170-mRNA-1:cds;Parent=Msa1167170-mRNA-1
chr7_4 CDS 59497748 59497915 59497748 ID=Msa1167170-mRNA-1:cds;Parent=Msa1167170-mRNA-1
chr7_4 CDS 59499092 59499138 59499092 ID=Msa1167170-mRNA-1:cds;Parent=Msa1167170-mRNA-1
chr7_4 CDS 59499243 59499271 59499243 ID=Msa1167170-mRNA-1:cds;Parent=Msa1167170-mRNA-1
chr7_4 CDS 59499789 59499879 59499789 ID=Msa1167170-mRNA-1:cds;Parent=Msa1167170-mRNA-1
chr7_4 three_prime_UTR 59499880 59499891 59499880 ID=Msa1167170-mRNA-1:three_prime_utr;Parent=Msa1167170-mRNA-1
chr7_4 three_prime_UTR 59500031 59500488 59500031 ID=Msa1167170-mRNA-1:three_prime_utr;Parent=Msa1167170-mRNA-1
Gene Sequence

>Msa1167170

ATGGCTTCGATGAGTTTCACCATGGATTCAGTTTCTGTGTTAAACCCTAAACTCAACCACACCCATCTCTCTCATTCTCCGAAGTTTCATCCTTTACTCAAACACCGCAACACCACTTTCAAACTCTCTCTTCCTCGTTATGCCCTCAATCAACGCAGCAAACCGTTAACCCTCGTTTTCGCTGCTGCTACGCCTCAACATGACTCTGATCATGGTGAAGTTGAGGTAGAGAAGGGGAATGATGTTAGTTCTGAGGAGGAATCACAGGAAGCATGGAAGCAGGCTTTGGATACATTCAAGGAACAAGCTTTGAAGCTACAAGGGGTTTCTCAAGAAGCCTATGAAGTGTATTCTAAGAAGGCCATTGTGGTTTTGCAAGATACTTCAGAACAGTTGAAGATACAGGCCGATAAGGCAAGACATGATTTGAGTGTTGTGGCGAAGGAAATCACTGAAGAAGGAAAAGAGTATTTCTCTTCTGCTGCTGAGAATTCACCTGAGGTGAAGGAAATTGTGGAAACTTTTACCTCCCCAGATGATGATCTCAGCAAAGTTTCTGGAGTTCGGGACTTTTATGTTGGTATACCCTATGGTTTGTTACTATCTGCGGGTGGCTTCCTTTCCTTTATGATAACAGGAAGCATTGCAGCAATAAGGTTTGGGGTGATTTTAGGTGGTGTGCTATTGGCTTTAAGCATTTCAAGTCTGAAATCATATAAAAAAGGACAGCCCTCTTCTCTTGCTTTGAAGGGCCAGACAGCTATAGCAGGTATCTTGTTTCTGCGTGAGATCAGCATATTAGGCAGAGGATCAACTTATTTCACTGCTTTGATCAGTGGTGCGGTAGCGGCATTTTATGTCTATAGACTGGTTTTAGAAGGTAAACCACAAAAAGGTTCAAACTTTGAAGGTGAAGCAGGAAACTAG

Protein sequence

>Msa1167170

MASMSFTMDSVSVLNPKLNHTHLSHSPKFHPLLKHRNTTFKLSLPRYALNQRSKPLTLVFAAATPQHDSDHGEVEVEKGNDVSSEEESQEAWKQALDTFKEQALKLQGVSQEAYEVYSKKAIVVLQDTSEQLKIQADKARHDLSVVAKEITEEGKEYFSSAAENSPEVKEIVETFTSPDDDLSKVSGVRDFYVGIPYGLLLSAGGFLSFMITGSIAAIRFGVILGGVLLALSISSLKSYKKGQPSSLALKGQTAIAGILFLREISILGRGSTYFTALISGAVAAFYVYRLVLEGKPQKGSNFEGEAGN*